Psyllid ID: psy3253

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQNGGK
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEccEEEEEEEccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHccccccEEEcccccEEEEcEEEEcccccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEHEEcccccEEEEEEEcccccHHHHEEEccccccHHHHHHHHHHHHHHHHHHHHcccEEccccHHHEEEcccccccccccccccccccccccccccHHHEEEcccccEEEccccccHEccccccccccccccHHHccHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHcccHHHcccHHHHHcccHHccccccHHHHccc
Coil and Loop (DISEMBL)
mqqcdspyvvkyygsyfkntdLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRdikagsgtlvydrldycsikcnvITNQIYKTLFRLKAGNillnteghakladfgvagqltDTMAKrntvigtpfwmaPEVIQEIGYDCVADMWSLGITALemaegkppygdihpmraifmiptkpppsfrepdvwtpeFIDFVSRClvknpeerATASEMLNHefiqrhdtdpsqnggk
Flexible Loop (DISEMBL)
MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHrdikagsgtlvyDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASemlnhefiqrhdtdpsqnggk
Low Complexity Region (SEG)
MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQNGGK
Disordered region (IsUnstruct)
******PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK****FREPDVWTPEFIDFVSRCLVK******************************
Disordered Region (DISOPRED)
****DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI*************
Disordered Region (DISEMBL)
MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR***********
Disordered Region (DISPRO)
**QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIK************FRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD*S*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQNGGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q8T0S6	669	Serine/threonine-protein	yes	N/A	0.820	0.307	0.757	1e-105
Q13188	491	Serine/threonine-protein	yes	N/A	0.820	0.419	0.736	1e-103
Q6IP06	493	Serine/threonine-protein	N/A	N/A	0.820	0.417	0.740	1e-103
Q9JI10	497	Serine/threonine-protein	yes	N/A	0.820	0.414	0.732	1e-103
O54748	491	Serine/threonine-protein	no	N/A	0.820	0.419	0.732	1e-102
Q802A6	491	Serine/threonine-protein	N/A	N/A	0.820	0.419	0.723	1e-102
Q9JI11	487	Serine/threonine-protein	no	N/A	0.820	0.422	0.728	1e-102
Q5E9L6	487	Serine/threonine-protein	no	N/A	0.820	0.422	0.728	1e-102
Q7ZUQ3	492	Serine/threonine-protein	yes	N/A	0.816	0.416	0.735	1e-102
Q13043	487	Serine/threonine-protein	no	N/A	0.820	0.422	0.728	1e-102

>sp|Q8T0S6|HIPPO_DROME Serine/threonine-protein kinase hippo OS=Drosophila melanogaster GN=hpo PE=1 SV=1

 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/239 (75%), Positives = 195/239 (81%), Gaps = 33/239 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSPYVV+YYGSYFK  DLWI MEYCGAGSVSDIMRLRKKTL+EDEIATIL DTL+G
Sbjct: 89  MQQCDSPYVVRYYGSYFKQYDLWICMEYCGAGSVSDIMRLRKKTLTEDEIATILSDTLQG 148

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLHLRRKIHRDIKA                                  NILLNTEG+A
Sbjct: 149 LVYLHLRRKIHRDIKAA---------------------------------NILLNTEGYA 175

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI+EIGYDCVAD+WSLGITALEMAEGKPP
Sbjct: 176 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDCVADIWSLGITALEMAEGKPP 235

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           YG+IHPMRAIFMIP KPPPSFREPD W+ EFIDFVS+CLVK P++RATA+E+L HEFI+
Sbjct: 236 YGEIHPMRAIFMIPQKPPPSFREPDRWSTEFIDFVSKCLVKEPDDRATATELLEHEFIR 294

Plays a key role in the Hippo/SWH (Sav/Wts/Hpo) signaling pathway, a signaling pathway that plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein Hippo (Hpo), in complex with its regulatory protein Salvador (Sav), phosphorylates and activates Warts (Wts) in complex with its regulatory protein Mats, which in turn phosphorylates and inactivates the Yorkie (Yki) oncoprotein. The Hippo/SWH signaling pathway inhibits the activity of the transcriptional complex formed by Scalloped (sd) and Yki and the target genes of this pathway include cyclin-E (cycE), diap1 and bantam. Phosphorylates Sav, Wts and Th/DIAP1. Regulates the level of Th/DIAP1 apoptosis inhibitor.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q13188|STK3_HUMAN Serine/threonine-protein kinase 3 OS=Homo sapiens GN=STK3 PE=1 SV=2

 Score =  373 bits (957), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/239 (73%), Positives = 193/239 (80%), Gaps = 33/239 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDI+RLR KTL EDEIATIL  TLKG
Sbjct: 74  MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLIEDEIATILKSTLKG 133

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH  RKIHRDIKAG                                 NILLNTEGHA
Sbjct: 134 LEYLHFMRKIHRDIKAG---------------------------------NILLNTEGHA 160

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WSLGIT++EMAEGKPP
Sbjct: 161 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITSIEMAEGKPP 220

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y DIHPMRAIFMIPT PPP+FR+P++W+ +F DFV +CLVKNPE+RATA+++L H FI+
Sbjct: 221 YADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKNPEQRATATQLLQHPFIK 279

Stress-activated, pro-apoptotic kinase which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. Key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein STK3/MST2 and STK4/MST1, in complex with its regulatory protein SAV1, phosphorylates and activates LATS1/2 in complex with its regulatory protein MOB1, which in turn phosphorylates and inactivates YAP1 oncoprotein and WWTR1/TAZ. Phosphorylation of YAP1 by LATS2 inhibits its translocation into the nucleus to regulate cellular genes important for cell proliferation, cell death, and cell migration. STK3/MST2 and STK4/MST1 are required to repress proliferation of mature hepatocytes, to prevent activation of facultative adult liver stem cells (oval cells), and to inhibit tumor formation. Phosphorylates NKX2-1 (By similarity). Phosphorylates NEK2 and plays a role in centrosome disjunction by regulating the localization of NEK2 to centrosome, and its ability to phosphorylate CROCC and CEP250. In conjunction with SAV1, activates the transcriptional activity of ESR1 through the modulation of its phosphorylation. Positively regulates RAF1 activation via suppression of the inhibitory phosphorylation of RAF1 on 'Ser-259'. Phosphorylates MOBKL1A and RASSF2. Phosphorylates MOBKL1B on 'Thr-74'. Acts cooperatively with MOBKL1B to activate STK38.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6IP06|STK3_XENLA Serine/threonine-protein kinase 3 OS=Xenopus laevis GN=stk3 PE=2 SV=1

 Score =  373 bits (957), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/239 (74%), Positives = 193/239 (80%), Gaps = 33/239 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDS YVVKYYGSYFKNTDLWIVMEYCGAGSVSDI+RLR KTL+EDEIATIL  TLKG
Sbjct: 73  MQQCDSHYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILRSTLKG 132

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH  RKIHRDIKAG                                 NILLNTEGHA
Sbjct: 133 LEYLHFMRKIHRDIKAG---------------------------------NILLNTEGHA 159

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WSLGIT++EMAEGKPP
Sbjct: 160 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITSIEMAEGKPP 219

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y DIHPMRAIFMIPT PPP+FR+P++WT EF DFV +CLVKNPE+RATA+++L H FI+
Sbjct: 220 YADIHPMRAIFMIPTNPPPTFRKPELWTDEFTDFVKKCLVKNPEQRATATQLLQHPFIK 278

Stress-activated, pro-apoptotic kinase which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. Key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein stk3/mst2 and stk4/mst1, in complex with its regulatory protein sav1, phosphorylates and activates lats1/2 in complex with its regulatory protein mob1, which in turn phosphorylates and inactivates yap1 oncoprotein and wwtr1/taz. Phosphorylation of yap1 by lats2 inhibits its translocation into the nucleus to regulate cellular genes important for cell proliferation, cell death, and cell migration.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9JI10|STK3_MOUSE Serine/threonine-protein kinase 3 OS=Mus musculus GN=Stk3 PE=1 SV=1

 Score =  373 bits (957), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/239 (73%), Positives = 194/239 (81%), Gaps = 33/239 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDI+RLR KTL+EDEIATIL  TLKG
Sbjct: 74  MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILKSTLKG 133

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH  RKIHRDIKAG                                 NILLNTEGHA
Sbjct: 134 LEYLHFMRKIHRDIKAG---------------------------------NILLNTEGHA 160

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WSLGIT++EMAEGKPP
Sbjct: 161 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITSIEMAEGKPP 220

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y DIHPMRAIFMIPT PPP+FR+P++W+ +F DFV +CLVK+PE+RATA+++L H FI+
Sbjct: 221 YADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKSPEQRATATQLLQHPFIK 279

Stress-activated, pro-apoptotic kinase which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. Key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein STK3/MST2 and STK4/MST1, in complex with its regulatory protein SAV1, phosphorylates and activates LATS1/2 in complex with its regulatory protein MOB1, which in turn phosphorylates and inactivates YAP1 oncoprotein and WWTR1/TAZ. Phosphorylation of YAP1 by LATS2 inhibits its translocation into the nucleus to regulate cellular genes important for cell proliferation, cell death, and cell migration. STK3/MST2 and STK4/MST1 are required to repress proliferation of mature hepatocytes, to prevent activation of facultative adult liver stem cells (oval cells), and to inhibit tumor formation. Phosphorylates NKX2-1. Phosphorylates NEK2 and plays a role in centrosome disjunction by regulating the localization of NEK2 to centrosomes, and its ability to phosphorylate CROCC and CEP250. In conjunction with SAV1, activates the transcriptional activity of ESR1 through the modulation of its phosphorylation. Positively regulates RAF1 activation via suppression of the inhibitory phosphorylation of RAF1 on 'Ser-259'. Phosphorylates MOBKL1A and RASSF2. Phosphorylates MOBKL1B on 'Thr-74'. Acts cooperatively with MOBKL1B to activate STK38.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O54748|STK3_RAT Serine/threonine-protein kinase 3 OS=Rattus norvegicus GN=Stk3 PE=1 SV=1

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/239 (73%), Positives = 194/239 (81%), Gaps = 33/239 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDI+RLR KTL+EDEIATIL  TLKG
Sbjct: 74  MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILKSTLKG 133

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH  RKIHRDIKAG                                 NILLNTEGHA
Sbjct: 134 LEYLHFMRKIHRDIKAG---------------------------------NILLNTEGHA 160

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WSLGIT++EMAEGKPP
Sbjct: 161 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITSIEMAEGKPP 220

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y DIHPMRAIFMIPT PPP+FR+P++W+ +F DFV +CLVK+PE+RATA+++L H FI+
Sbjct: 221 YADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKSPEQRATATQLLQHPFIK 279

Stress-activated, pro-apoptotic kinase which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. Key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein STK3/MST2 and STK4/MST1, in complex with its regulatory protein SAV1, phosphorylates and activates LATS1/2 in complex with its regulatory protein MOB1, which in turn phosphorylates and inactivates YAP1 oncoprotein and WWTR1/TAZ. Phosphorylation of YAP1 by LATS2 inhibits its translocation into the nucleus to regulate cellular genes important for cell proliferation, cell death, and cell migration. STK3/MST2 and STK4/MST1 are required to repress proliferation of mature hepatocytes, to prevent activation of facultative adult liver stem cells (oval cells), and to inhibit tumor formation (By similarity). Phosphorylates NKX2-1. Phosphorylates NEK2 and plays a role in centrosome disjunction by regulating the localization of NEK2 to centrosomes, and its ability to phosphorylate CROCC and CEP250. In conjunction with SAV1, activates the transcriptional activity of ESR1 through the modulation of its phosphorylation. Positively regulates RAF1 activation via suppression of the inhibitory phosphorylation of RAF1 on 'Ser-259'. Phosphorylates MOBKL1A and RASSF2. Phosphorylates MOBKL1B on 'Thr-74'. Acts cooperatively with MOBKL1B to activate STK38.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q802A6|STK4_SQUAC Serine/threonine-protein kinase 3/4 OS=Squalus acanthias GN=STK4 PE=2 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/239 (72%), Positives = 192/239 (80%), Gaps = 33/239 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSP+VVKYYGSYFKNTDLWIVMEYCGAGSVSD++R+R KTL+EDEIATIL  TLKG
Sbjct: 79  MQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDLIRIRNKTLTEDEIATILQSTLKG 138

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH  RKIHRDIKAG                                 NILLN EGHA
Sbjct: 139 LEYLHFMRKIHRDIKAG---------------------------------NILLNNEGHA 165

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WSLGI+A+EMAEGKPP
Sbjct: 166 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGISAIEMAEGKPP 225

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y DIHPMRAIFMIPT PPP+FR+P++WT EF DFV +CLVKNPE+RA A+++L H FI+
Sbjct: 226 YADIHPMRAIFMIPTNPPPTFRKPELWTDEFTDFVKQCLVKNPEQRAAATQLLQHPFIK 284

Stress-activated, pro-apoptotic kinase which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. Key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein stk3/mst2 and stk4/mst1, in complex with its regulatory protein sav1, phosphorylates and activates lats1/2 in complex with its regulatory protein mob1, which in turn phosphorylates and inactivates yap1 oncoprotein and wwtr1/taz. Phosphorylation of yap1 by lats2 inhibits its translocation into the nucleus to regulate cellular genes important for cell proliferation, cell death, and cell migration. Phosphorylates 'Ser-14' of histone H2B (H2BS14ph) during apoptosis.

Squalus acanthias (taxid: 7797)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9JI11|STK4_MOUSE Serine/threonine-protein kinase 4 OS=Mus musculus GN=Stk4 PE=1 SV=1

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/239 (72%), Positives = 194/239 (81%), Gaps = 33/239 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSP+VVKYYGSYFKNTDLWIVMEYCGAGSVSDI+RLR KTL+EDEIATIL  TLKG
Sbjct: 77  MQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKG 136

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH  RKIHRDIKAG                                 NILLNTEGHA
Sbjct: 137 LEYLHFMRKIHRDIKAG---------------------------------NILLNTEGHA 163

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WSLGITA+EMAEGKPP
Sbjct: 164 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPP 223

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y DIHPMRAIFMIPT PPP+FR+P++W+  F+DFV +CLVK+PE+RATA+++L H F++
Sbjct: 224 YADIHPMRAIFMIPTNPPPTFRKPELWSDNFMDFVKQCLVKSPEQRATATQLLQHPFVK 282

Stress-activated, pro-apoptotic kinase which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. Key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein STK3/MST2 and STK4/MST1, in complex with its regulatory protein SAV1, phosphorylates and activates LATS1/2 in complex with its regulatory protein MOB1, which in turn phosphorylates and inactivates YAP1 oncoprotein and WWTR1/TAZ. Phosphorylation of YAP1 by LATS2 inhibits its translocation into the nucleus to regulate cellular genes important for cell proliferation, cell death, and cell migration. STK3/MST2 and STK4/MST1 are required to repress proliferation of mature hepatocytes, to prevent activation of facultative adult liver stem cells (oval cells), and to inhibit tumor formation. Phosphorylates 'Ser-14' of histone H2B (H2BS14ph) during apoptosis. Phosphorylates FOXO3 upon oxidative stress, which results in its nuclear translocation and cell death initiation. Phosphorylates MOBKL1A, MOBKL1B and RASSF2. Phosphorylates TNNI3 (cardiac Tn-I) and alters its binding affinity to TNNC1 (cardiac Tn-C) and TNNT2 (cardiac Tn-T). Phosphorylates FOXO1 on 'Ser-212' and regulates its activation and stimulates transcription of PMAIP1 in a FOXO1-dependent manner. Phosphorylates SIRT1 and inhibits SIRT1-mediated p53/TP53 deacetylation, thereby promoting p53/TP53 dependent transcription and apoptosis upon DNA damage. Acts as an inhibitor of PKB/AKT1. Phosphorylates AR on 'Ser-650' and suppresses its activity by intersecting with PKB/AKT1 signaling and antagonizing formation of AR-chromatin complexes.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5E9L6|STK4_BOVIN Serine/threonine-protein kinase 4 OS=Bos taurus GN=STK4 PE=2 SV=1

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/239 (72%), Positives = 194/239 (81%), Gaps = 33/239 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSP+VVKYYGSYFKNTDLWIVMEYCGAGSVSDI+RLR KTL+EDEIATIL  TLKG
Sbjct: 77  MQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKG 136

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH  RKIHRDIKAG                                 NILLNTEGHA
Sbjct: 137 LEYLHFMRKIHRDIKAG---------------------------------NILLNTEGHA 163

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WSLGITA+EMAEGKPP
Sbjct: 164 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPP 223

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y DIHPMRAIFMIPT PPP+FR+P++W+  F+DFV +CLVK+PE+RATA+++L H F++
Sbjct: 224 YADIHPMRAIFMIPTNPPPTFRKPELWSDSFMDFVKQCLVKSPEQRATATQLLQHPFVK 282

Stress-activated, pro-apoptotic kinase which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. Key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein STK3/MST2 and STK4/MST1, in complex with its regulatory protein SAV1, phosphorylates and activates LATS1/2 in complex with its regulatory protein MOB1, which in turn phosphorylates and inactivates YAP1 oncoprotein and WWTR1/TAZ. Phosphorylation of YAP1 by LATS2 inhibits its translocation into the nucleus to regulate cellular genes important for cell proliferation, cell death, and cell migration. STK3/MST2 and STK4/MST1 are required to repress proliferation of mature hepatocytes, to prevent activation of facultative adult liver stem cells (oval cells), and to inhibit tumor formation. Phosphorylates 'Ser-14' of histone H2B (H2BS14ph) during apoptosis. Phosphorylates FOXO3 upon oxidative stress, which results in its nuclear translocation and cell death initiation. Phosphorylates MOBKL1A, MOBKL1B and RASSF2. Phosphorylates TNNI3 (cardiac Tn-I) and alters its binding affinity to TNNC1 (cardiac Tn-C) and TNNT2 (cardiac Tn-T). Phosphorylates FOXO1 on 'Ser-212' and regulates its activation and stimulates transcription of PMAIP1 in a FOXO1-dependent manner. Phosphorylates SIRT1 and inhibits SIRT1-mediated p53/TP53 deacetylation, thereby promoting p53/TP53 dependent transcription and apoptosis upon DNA damage. Acts as an inhibitor of PKB/AKT1. Phosphorylates AR on 'Ser-650' and suppresses its activity by intersecting with PKB/AKT1 signaling and antagonizing formation of AR-chromatin complexes.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q7ZUQ3|STK3_DANRE Serine/threonine-protein kinase 3 OS=Danio rerio GN=stk3 PE=2 SV=1

 Score =  371 bits (953), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/238 (73%), Positives = 192/238 (80%), Gaps = 33/238 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDI+RLR KTL+EDEIAT+L  TLKG
Sbjct: 73  MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATVLKSTLKG 132

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH  RKIHRDIKAG                                 NILLNTEGHA
Sbjct: 133 LEYLHFMRKIHRDIKAG---------------------------------NILLNTEGHA 159

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WSLGIT++EMAEGKPP
Sbjct: 160 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITSIEMAEGKPP 219

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           Y DIHPMRAIFMIPT PPP+FR+P+ W+ +F DFV +CLVKNPE+RATA+++L H FI
Sbjct: 220 YADIHPMRAIFMIPTNPPPTFRKPEHWSDDFTDFVKKCLVKNPEQRATATQLLQHPFI 277

Stress-activated, pro-apoptotic kinase which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. Key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein stk3/mst2 and stk4/mst1, in complex with its regulatory protein sav1, phosphorylates and activates lats1/2 in complex with its regulatory protein mob1, which in turn phosphorylates and inactivates yap1 oncoprotein and wwtr1/taz. Phosphorylation of yap1 by lats2 inhibits its translocation into the nucleus to regulate cellular genes important for cell proliferation, cell death, and cell migration.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q13043|STK4_HUMAN Serine/threonine-protein kinase 4 OS=Homo sapiens GN=STK4 PE=1 SV=2

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/239 (72%), Positives = 193/239 (80%), Gaps = 33/239 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSP+VVKYYGSYFKNTDLWIVMEYCGAGSVSDI+RLR KTL+EDEIATIL  TLKG
Sbjct: 77  MQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKG 136

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH  RKIHRDIKAG                                 NILLNTEGHA
Sbjct: 137 LEYLHFMRKIHRDIKAG---------------------------------NILLNTEGHA 163

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WSLGITA+EMAEGKPP
Sbjct: 164 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPP 223

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y DIHPMRAIFMIPT PPP+FR+P++W+  F DFV +CLVK+PE+RATA+++L H F++
Sbjct: 224 YADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVR 282

Stress-activated, pro-apoptotic kinase which, following caspase-cleavage, enters the nucleus and induces chromatin condensation followed by internucleosomal DNA fragmentation. Key component of the Hippo signaling pathway which plays a pivotal role in organ size control and tumor suppression by restricting proliferation and promoting apoptosis. The core of this pathway is composed of a kinase cascade wherein STK3/MST2 and STK4/MST1, in complex with its regulatory protein SAV1, phosphorylates and activates LATS1/2 in complex with its regulatory protein MOB1, which in turn phosphorylates and inactivates YAP1 oncoprotein and WWTR1/TAZ. Phosphorylation of YAP1 by LATS2 inhibits its translocation into the nucleus to regulate cellular genes important for cell proliferation, cell death, and cell migration. STK3/MST2 and STK4/MST1 are required to repress proliferation of mature hepatocytes, to prevent activation of facultative adult liver stem cells (oval cells), and to inhibit tumor formation (By similarity). Phosphorylates 'Ser-14' of histone H2B (H2BS14ph) during apoptosis. Phosphorylates FOXO3 upon oxidative stress, which results in its nuclear translocation and cell death initiation. Phosphorylates MOBKL1A, MOBKL1B and RASSF2. Phosphorylates TNNI3 (cardiac Tn-I) and alters its binding affinity to TNNC1 (cardiac Tn-C) and TNNT2 (cardiac Tn-T). Phosphorylates FOXO1 on 'Ser-212' and regulates its activation and stimulates transcription of PMAIP1 in a FOXO1-dependent manner. Phosphorylates SIRT1 and inhibits SIRT1-mediated p53/TP53 deacetylation, thereby promoting p53/TP53 dependent transcription and apoptosis upon DNA damage. Acts as an inhibitor of PKB/AKT1. Phosphorylates AR on 'Ser-650' and suppresses its activity by intersecting with PKB/AKT1 signaling and antagonizing formation of AR-chromatin complexes.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
345480521	528	PREDICTED: serine/threonine-protein kina	0.816	0.388	0.827	1e-113
156551419	521	PREDICTED: serine/threonine-protein kina	0.816	0.393	0.827	1e-113
328706800	541	PREDICTED: serine/threonine-protein kina	0.816	0.378	0.823	1e-112
328786401	521	PREDICTED: serine/threonine-protein kina	0.816	0.393	0.823	1e-112
350421067	521	PREDICTED: serine/threonine-protein kina	0.816	0.393	0.823	1e-112
340719762	521	PREDICTED: serine/threonine-protein kina	0.816	0.393	0.823	1e-112
170027953	615	serine/threonine-protein kinase 3 [Culex	0.820	0.334	0.807	1e-111
332017045	529	Serine/threonine-protein kinase 3 [Acrom	0.816	0.387	0.819	1e-111
383847106	521	PREDICTED: serine/threonine-protein kina	0.816	0.393	0.819	1e-111
158295227	676	AGAP006044-PA [Anopheles gambiae str. PE	0.820	0.304	0.807	1e-111

>gi|345480521|ref|XP_003424164.1| PREDICTED: serine/threonine-protein kinase hippo-like isoform 2 [Nasonia vitripennis]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/238 (82%), Positives = 201/238 (84%), Gaps = 33/238 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSP+VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL EDEIATILCDTLKG
Sbjct: 77  MQQCDSPFVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLQEDEIATILCDTLKG 136

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLHLRRKIHRDIKAG                                 NILLN EGHA
Sbjct: 137 LEYLHLRRKIHRDIKAG---------------------------------NILLNNEGHA 163

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD+WSLGITALEMAEGKPP
Sbjct: 164 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADIWSLGITALEMAEGKPP 223

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           YGDIHPMRAIFMIPTKPPPSFREPD W+PEFIDFVS CLVKNPEERATASE+LNHEFI
Sbjct: 224 YGDIHPMRAIFMIPTKPPPSFREPDQWSPEFIDFVSVCLVKNPEERATASELLNHEFI 281

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551419|ref|XP_001604121.1| PREDICTED: serine/threonine-protein kinase hippo-like isoform 1 [Nasonia vitripennis]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/238 (82%), Positives = 201/238 (84%), Gaps = 33/238 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSP+VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL EDEIATILCDTLKG
Sbjct: 70  MQQCDSPFVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLQEDEIATILCDTLKG 129

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLHLRRKIHRDIKAG                                 NILLN EGHA
Sbjct: 130 LEYLHLRRKIHRDIKAG---------------------------------NILLNNEGHA 156

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD+WSLGITALEMAEGKPP
Sbjct: 157 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADIWSLGITALEMAEGKPP 216

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           YGDIHPMRAIFMIPTKPPPSFREPD W+PEFIDFVS CLVKNPEERATASE+LNHEFI
Sbjct: 217 YGDIHPMRAIFMIPTKPPPSFREPDQWSPEFIDFVSVCLVKNPEERATASELLNHEFI 274

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328706800|ref|XP_001950941.2| PREDICTED: serine/threonine-protein kinase hippo-like [Acyrthosiphon pisum]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/238 (82%), Positives = 203/238 (85%), Gaps = 33/238 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL DTLKG
Sbjct: 91  MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILSDTLKG 150

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLHLRRKIHRDIKAG                                 NILLN+EGHA
Sbjct: 151 LEYLHLRRKIHRDIKAG---------------------------------NILLNSEGHA 177

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP
Sbjct: 178 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 237

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           YGDIHPMRAIFMIPTKPPPSFREPD W+PEFIDFVS+CL+KNPEERATA++ML+HEFI
Sbjct: 238 YGDIHPMRAIFMIPTKPPPSFREPDKWSPEFIDFVSQCLIKNPEERATATKMLDHEFI 295

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786401|ref|XP_393691.4| PREDICTED: serine/threonine-protein kinase 3-like isoform 1 [Apis mellifera] gi|380027210|ref|XP_003697322.1| PREDICTED: serine/threonine-protein kinase 3-like [Apis florea]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/238 (82%), Positives = 200/238 (84%), Gaps = 33/238 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL EDEIATIL DTLKG
Sbjct: 70  MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLQEDEIATILSDTLKG 129

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLHLRRKIHRDIKAG                                 NILLN EGHA
Sbjct: 130 LEYLHLRRKIHRDIKAG---------------------------------NILLNNEGHA 156

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD+WSLGITALEMAEGKPP
Sbjct: 157 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADIWSLGITALEMAEGKPP 216

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           YGDIHPMRAIFMIPTKPPPSFREPD W+PEFIDFVS CLVKNPEERATA+E+LNHEFI
Sbjct: 217 YGDIHPMRAIFMIPTKPPPSFREPDQWSPEFIDFVSGCLVKNPEERATATELLNHEFI 274

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421067|ref|XP_003492721.1| PREDICTED: serine/threonine-protein kinase 3-like [Bombus impatiens]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/238 (82%), Positives = 200/238 (84%), Gaps = 33/238 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL EDEIATIL DTLKG
Sbjct: 70  MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLQEDEIATILSDTLKG 129

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLHLRRKIHRDIKAG                                 NILLN EGHA
Sbjct: 130 LEYLHLRRKIHRDIKAG---------------------------------NILLNNEGHA 156

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD+WSLGITALEMAEGKPP
Sbjct: 157 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADIWSLGITALEMAEGKPP 216

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           YGDIHPMRAIFMIPTKPPPSFREPD W+PEFIDFVS CLVKNPEERATA+E+LNHEFI
Sbjct: 217 YGDIHPMRAIFMIPTKPPPSFREPDQWSPEFIDFVSGCLVKNPEERATATELLNHEFI 274

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719762|ref|XP_003398316.1| PREDICTED: serine/threonine-protein kinase 3-like [Bombus terrestris]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/238 (82%), Positives = 200/238 (84%), Gaps = 33/238 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL EDEIATIL DTLKG
Sbjct: 70  MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLQEDEIATILSDTLKG 129

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLHLRRKIHRDIKAG                                 NILLN EGHA
Sbjct: 130 LEYLHLRRKIHRDIKAG---------------------------------NILLNNEGHA 156

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD+WSLGITALEMAEGKPP
Sbjct: 157 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADIWSLGITALEMAEGKPP 216

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           YGDIHPMRAIFMIPTKPPPSFREPD W+PEFIDFVS CLVKNPEERATA+E+LNHEFI
Sbjct: 217 YGDIHPMRAIFMIPTKPPPSFREPDQWSPEFIDFVSGCLVKNPEERATATELLNHEFI 274

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170027953|ref|XP_001841861.1| serine/threonine-protein kinase 3 [Culex quinquefasciatus] gi|167868331|gb|EDS31714.1| serine/threonine-protein kinase 3 [Culex quinquefasciatus]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/239 (80%), Positives = 203/239 (84%), Gaps = 33/239 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL DTLKG
Sbjct: 67  MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILIDTLKG 126

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLHLRRKIHRDIKAG                                 NILLN+EGHA
Sbjct: 127 LEYLHLRRKIHRDIKAG---------------------------------NILLNSEGHA 153

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI+EIGYDCVAD+WSLGITALEMAEGKPP
Sbjct: 154 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDCVADIWSLGITALEMAEGKPP 213

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           YGDIHPMRAIFMIPTKPPPSFR+PD+W+PEFIDFVS CLVKNPEERATA+++L HEFI+
Sbjct: 214 YGDIHPMRAIFMIPTKPPPSFRDPDIWSPEFIDFVSLCLVKNPEERATATDLLTHEFIR 272

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017045|gb|EGI57844.1| Serine/threonine-protein kinase 3 [Acromyrmex echinatior]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/238 (81%), Positives = 199/238 (83%), Gaps = 33/238 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL EDEIATIL DTLKG
Sbjct: 77  MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLQEDEIATILSDTLKG 136

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLHLRRKIHRDIKAG                                 NILLN EGHA
Sbjct: 137 LEYLHLRRKIHRDIKAG---------------------------------NILLNNEGHA 163

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD+WSLGITALEMAEGKPP
Sbjct: 164 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADIWSLGITALEMAEGKPP 223

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           YGDIHPMRAIFMIPTKPPPSFREPD W+PEFIDFVS CLVKNPEERATA+E+L HEFI
Sbjct: 224 YGDIHPMRAIFMIPTKPPPSFREPDQWSPEFIDFVSGCLVKNPEERATATELLQHEFI 281

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847106|ref|XP_003699196.1| PREDICTED: serine/threonine-protein kinase 3-like [Megachile rotundata]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/238 (81%), Positives = 199/238 (83%), Gaps = 33/238 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL EDEIATIL DTLKG
Sbjct: 70  MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLQEDEIATILSDTLKG 129

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLHLRRKIHRDIKAG                                 NILLN EGHA
Sbjct: 130 LEYLHLRRKIHRDIKAG---------------------------------NILLNNEGHA 156

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD+WSLGITALEMAEGKPP
Sbjct: 157 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADIWSLGITALEMAEGKPP 216

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           YGDIHPMRAIFMIPTKPPPSFREPD W+ EFIDFVS CLVKNPEERATA+E+LNHEFI
Sbjct: 217 YGDIHPMRAIFMIPTKPPPSFREPDQWSSEFIDFVSGCLVKNPEERATATELLNHEFI 274

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295227|ref|XP_316092.4| AGAP006044-PA [Anopheles gambiae str. PEST] gi|157015934|gb|EAA11663.5| AGAP006044-PA [Anopheles gambiae str. PEST]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/239 (80%), Positives = 203/239 (84%), Gaps = 33/239 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL DTLKG
Sbjct: 78  MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILIDTLKG 137

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLHLRRKIHRDIKAG                                 NILLN+EGHA
Sbjct: 138 LEYLHLRRKIHRDIKAG---------------------------------NILLNSEGHA 164

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI+EIGYDCVAD+WSLGITALEMAEGKPP
Sbjct: 165 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDCVADIWSLGITALEMAEGKPP 224

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           YGDIHPMRAIFMIPTKPPPSFR+PD+W+PEFIDFVS CLVKNPEERATA+++L HEFI+
Sbjct: 225 YGDIHPMRAIFMIPTKPPPSFRDPDIWSPEFIDFVSLCLVKNPEERATATDLLAHEFIR 283

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
UNIPROTKB|F1P2Z4	379	STK3 "Uncharacterized protein"	0.529	0.350	0.827	6.8e-98
UNIPROTKB|A0JN96	491	STK3 "Serine/threonine kinase	0.529	0.270	0.819	1.4e-97
UNIPROTKB|E2QTV3	380	STK3 "Uncharacterized protein"	0.529	0.35	0.819	1.4e-97
UNIPROTKB|F6URD2	491	STK3 "Uncharacterized protein"	0.529	0.270	0.819	1.4e-97
UNIPROTKB|Q6IP06	493	stk3 "Serine/threonine-protein	0.529	0.269	0.834	2.3e-97
UNIPROTKB|B3KYA7	519	STK3 "Serine/threonine-protein	0.529	0.256	0.819	2.9e-97
UNIPROTKB|Q13188	491	STK3 "Serine/threonine-protein	0.529	0.270	0.819	2.9e-97
MGI|MGI:1928487	497	Stk3 "serine/threonine kinase	0.529	0.267	0.812	4.7e-97
RGD|68412	491	Stk3 "serine/threonine kinase	0.529	0.270	0.812	4.7e-97
UNIPROTKB|O54748	491	Stk3 "Serine/threonine-protein	0.529	0.270	0.812	4.7e-97

UNIPROTKB|F1P2Z4 STK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 621 (223.7 bits), Expect = 6.8e-98, Sum P(2) = 6.8e-98
 Identities = 110/133 (82%), Positives = 126/133 (94%)

Query:   107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWS 166
             +KAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WS
Sbjct:   146 IKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWS 205

Query:   167 LGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
             LGIT++EMAEGKPPY DIHPMRAIFMIPT PPP+FR+P++W+ EF DFV +CLVKNPE+R
Sbjct:   206 LGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDEFTDFVKKCLVKNPEQR 265

Query:   227 ATASEMLNHEFIQ 239
             ATA+++L H FI+
Sbjct:   266 ATATQLLQHTFIK 278

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

GO:0003157 "endocardium development" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0035329 "hippo signaling cascade" evidence=IEA

GO:0043539 "protein serine/threonine kinase activator activity" evidence=IEA

GO:0046330 "positive regulation of JNK cascade" evidence=IEA

GO:0046621 "negative regulation of organ growth" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0060215 "primitive hemopoiesis" evidence=IEA

GO:0060706 "cell differentiation involved in embryonic placenta development" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|A0JN96 STK3 "Serine/threonine kinase 3 (STE20 homolog, yeast)" [Bos taurus (taxid:9913)]

 Score = 618 (222.6 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
 Identities = 109/133 (81%), Positives = 126/133 (94%)

Query:   107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWS 166
             +KAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WS
Sbjct:   147 IKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWS 206

Query:   167 LGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
             LGIT++EMAEGKPPY DIHPMRAIFMIPT PPP+FR+P++W+ +F DFV +CLVKNPE+R
Sbjct:   207 LGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKNPEQR 266

Query:   227 ATASEMLNHEFIQ 239
             ATA+++L H FI+
Sbjct:   267 ATATQLLQHPFIK 279

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003157 "endocardium development" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060706 "cell differentiation involved in embryonic placenta development" evidence=IEA

GO:0060215 "primitive hemopoiesis" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0046621 "negative regulation of organ growth" evidence=IEA

GO:0046330 "positive regulation of JNK cascade" evidence=IEA

GO:0043539 "protein serine/threonine kinase activator activity" evidence=IEA

GO:0035329 "hippo signaling cascade" evidence=IEA

UNIPROTKB|E2QTV3 STK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 618 (222.6 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
 Identities = 109/133 (81%), Positives = 126/133 (94%)

Query:   107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWS 166
             +KAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WS
Sbjct:    74 IKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWS 133

Query:   167 LGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
             LGIT++EMAEGKPPY DIHPMRAIFMIPT PPP+FR+P++W+ +F DFV +CLVKNPE+R
Sbjct:   134 LGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKNPEQR 193

Query:   227 ATASEMLNHEFIQ 239
             ATA+++L H FI+
Sbjct:   194 ATATQLLQHPFIK 206

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|F6URD2 STK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 618 (222.6 bits), Expect = 1.4e-97, Sum P(2) = 1.4e-97
 Identities = 109/133 (81%), Positives = 126/133 (94%)

Query:   107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWS 166
             +KAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WS
Sbjct:   147 IKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWS 206

Query:   167 LGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
             LGIT++EMAEGKPPY DIHPMRAIFMIPT PPP+FR+P++W+ +F DFV +CLVKNPE+R
Sbjct:   207 LGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKNPEQR 266

Query:   227 ATASEMLNHEFIQ 239
             ATA+++L H FI+
Sbjct:   267 ATATQLLQHPFIK 279

GO:0005524 "ATP binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|Q6IP06 stk3 "Serine/threonine-protein kinase 3" [Xenopus laevis (taxid:8355)]

 Score = 625 (225.1 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
 Identities = 111/133 (83%), Positives = 126/133 (94%)

Query:   107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWS 166
             +KAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WS
Sbjct:   146 IKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWS 205

Query:   167 LGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
             LGIT++EMAEGKPPY DIHPMRAIFMIPT PPP+FR+P++WT EF DFV +CLVKNPE+R
Sbjct:   206 LGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWTDEFTDFVKKCLVKNPEQR 265

Query:   227 ATASEMLNHEFIQ 239
             ATA+++L H FI+
Sbjct:   266 ATATQLLQHPFIK 278

GO:0035329 "hippo signaling cascade" evidence=ISS

UNIPROTKB|B3KYA7 STK3 "Serine/threonine-protein kinase 3 36kDa subunit" [Homo sapiens (taxid:9606)]

 Score = 618 (222.6 bits), Expect = 2.9e-97, Sum P(2) = 2.9e-97
 Identities = 109/133 (81%), Positives = 126/133 (94%)

Query:   107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWS 166
             +KAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WS
Sbjct:   175 IKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWS 234

Query:   167 LGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
             LGIT++EMAEGKPPY DIHPMRAIFMIPT PPP+FR+P++W+ +F DFV +CLVKNPE+R
Sbjct:   235 LGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKNPEQR 294

Query:   227 ATASEMLNHEFIQ 239
             ATA+++L H FI+
Sbjct:   295 ATATQLLQHPFIK 307

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q13188 STK3 "Serine/threonine-protein kinase 3" [Homo sapiens (taxid:9606)]

 Score = 618 (222.6 bits), Expect = 2.9e-97, Sum P(2) = 2.9e-97
 Identities = 109/133 (81%), Positives = 126/133 (94%)

Query:   107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWS 166
             +KAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WS
Sbjct:   147 IKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWS 206

Query:   167 LGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
             LGIT++EMAEGKPPY DIHPMRAIFMIPT PPP+FR+P++W+ +F DFV +CLVKNPE+R
Sbjct:   207 LGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKNPEQR 266

Query:   227 ATASEMLNHEFIQ 239
             ATA+++L H FI+
Sbjct:   267 ATATQLLQHPFIK 279

GO:0001841 "neural tube formation" evidence=IEA

GO:0003157 "endocardium development" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0046330 "positive regulation of JNK cascade" evidence=IEA

GO:0046621 "negative regulation of organ growth" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0060215 "primitive hemopoiesis" evidence=IEA

GO:0060706 "cell differentiation involved in embryonic placenta development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=EXP;IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0007243 "intracellular protein kinase cascade" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0035329 "hippo signaling cascade" evidence=IDA;TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0004672 "protein kinase activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IMP

GO:0043539 "protein serine/threonine kinase activator activity" evidence=IDA

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IDA

MGI|MGI:1928487 Stk3 "serine/threonine kinase 3" [Mus musculus (taxid:10090)]

 Score = 613 (220.8 bits), Expect = 4.7e-97, Sum P(2) = 4.7e-97
 Identities = 108/133 (81%), Positives = 126/133 (94%)

Query:   107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWS 166
             +KAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WS
Sbjct:   147 IKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWS 206

Query:   167 LGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
             LGIT++EMAEGKPPY DIHPMRAIFMIPT PPP+FR+P++W+ +F DFV +CLVK+PE+R
Sbjct:   207 LGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKSPEQR 266

Query:   227 ATASEMLNHEFIQ 239
             ATA+++L H FI+
Sbjct:   267 ATATQLLQHPFIK 279

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0001841 "neural tube formation" evidence=IGI

GO:0003157 "endocardium development" evidence=IGI

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0007417 "central nervous system development" evidence=IGI

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0035329 "hippo signaling cascade" evidence=ISO;IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IGI

GO:0043539 "protein serine/threonine kinase activator activity" evidence=ISO

GO:0046330 "positive regulation of JNK cascade" evidence=IGI

GO:0046621 "negative regulation of organ growth" evidence=IGI

GO:0046872 "metal ion binding" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IGI

GO:0060215 "primitive hemopoiesis" evidence=IGI

GO:0060706 "cell differentiation involved in embryonic placenta development" evidence=IGI

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO;IGI

RGD|68412 Stk3 "serine/threonine kinase 3" [Rattus norvegicus (taxid:10116)]

 Score = 613 (220.8 bits), Expect = 4.7e-97, Sum P(2) = 4.7e-97
 Identities = 108/133 (81%), Positives = 126/133 (94%)

Query:   107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWS 166
             +KAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WS
Sbjct:   147 IKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWS 206

Query:   167 LGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
             LGIT++EMAEGKPPY DIHPMRAIFMIPT PPP+FR+P++W+ +F DFV +CLVK+PE+R
Sbjct:   207 LGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKSPEQR 266

Query:   227 ATASEMLNHEFIQ 239
             ATA+++L H FI+
Sbjct:   267 ATATQLLQHPFIK 279

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0001841 "neural tube formation" evidence=ISO

GO:0003157 "endocardium development" evidence=ISO

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO;ISS

GO:0005524 "ATP binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0006468 "protein phosphorylation" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0007417 "central nervous system development" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0035329 "hippo signaling cascade" evidence=ISO;ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043539 "protein serine/threonine kinase activator activity" evidence=ISO

GO:0046330 "positive regulation of JNK cascade" evidence=ISO

GO:0046621 "negative regulation of organ growth" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=ISO

GO:0060215 "primitive hemopoiesis" evidence=ISO

GO:0060706 "cell differentiation involved in embryonic placenta development" evidence=ISO

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

UNIPROTKB|O54748 Stk3 "Serine/threonine-protein kinase 3" [Rattus norvegicus (taxid:10116)]

 Score = 613 (220.8 bits), Expect = 4.7e-97, Sum P(2) = 4.7e-97
 Identities = 108/133 (81%), Positives = 126/133 (94%)

Query:   107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWS 166
             +KAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WS
Sbjct:   147 IKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWS 206

Query:   167 LGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
             LGIT++EMAEGKPPY DIHPMRAIFMIPT PPP+FR+P++W+ +F DFV +CLVK+PE+R
Sbjct:   207 LGITSIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDDFTDFVKKCLVKSPEQR 266

Query:   227 ATASEMLNHEFIQ 239
             ATA+++L H FI+
Sbjct:   267 ATATQLLQHPFIK 279

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7ZUQ3	STK3_DANRE	2, ., 7, ., 1, 1, ., 1	0.7352	0.8167	0.4166	yes	N/A
Q9NB31	CST1_CAEEL	2, ., 7, ., 1, 1, ., 1	0.6652	0.8207	0.4144	yes	N/A
Q8T0S6	HIPPO_DROME	2, ., 7, ., 1, 1, ., 1	0.7573	0.8207	0.3079	yes	N/A
Q13188	STK3_HUMAN	2, ., 7, ., 1, 1, ., 1	0.7364	0.8207	0.4195	yes	N/A
O61125	STK4_DICDI	2, ., 7, ., 1, 1, ., 1	0.5578	0.8247	0.4490	yes	N/A
Q9JI10	STK3_MOUSE	2, ., 7, ., 1, 1, ., 1	0.7322	0.8207	0.4144	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.824
3rd Layer	2.7.11	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	251
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	1e-148
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	1e-115
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-113
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	1e-110
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-94
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	3e-93
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	4e-84
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	3e-83
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	3e-82
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	3e-81
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	1e-79
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	7e-79
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	6e-73
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	2e-70
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	9e-70
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	9e-68
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	1e-67
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	2e-65
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	2e-65
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	2e-65
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	5e-65
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	7e-65
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	7e-65
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	9e-65
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-62
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	1e-62
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	5e-61
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	6e-61
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	3e-60
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	3e-55
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	1e-54
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	1e-54
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	2e-54
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	3e-54
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	3e-54
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	1e-53
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	4e-53
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	1e-51
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	2e-51
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	6e-51
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-48
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	3e-48
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	1e-47
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	7e-47
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	5e-46
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	4e-45
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	4e-43
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	2e-42
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	1e-39
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	3e-39
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	5e-39
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	8e-39
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	9e-39
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-38
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	5e-38
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	2e-37
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	4e-37
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	4e-36
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	9e-36
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	3e-35
smart00750	176	smart00750, KIND, kinase non-catalytic C-lobe doma	1e-34
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	4e-34
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	5e-34
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	2e-32
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	2e-32
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	4e-32
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	2e-31
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	4e-31
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	1e-30
cd08216	314	cd08216, PK_STRAD, Pseudokinase domain of STE20-re	3e-30
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	5e-30
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	6e-30
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	7e-30
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	9e-30
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	4e-29
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	9e-29
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	1e-28
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	3e-28
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	8e-28
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-27
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-27
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	8e-27
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	2e-26
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	2e-26
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	3e-26
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	5e-26
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	1e-25
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	5e-25
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	6e-25
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-24
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	7e-24
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	9e-24
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	3e-23
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	1e-22
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	5e-22
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	7e-22
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	1e-21
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	2e-21
cd08227	327	cd08227, PK_STRAD_alpha, Pseudokinase domain of ST	9e-21
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	1e-20
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-20
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	1e-20
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	3e-20
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	4e-20
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	6e-20
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	8e-20
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	6e-19
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	7e-19
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	1e-18
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	1e-18
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-18
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	2e-18
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	3e-18
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	3e-18
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	3e-18
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	8e-18
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	9e-18
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	9e-18
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	1e-17
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	1e-17
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	1e-17
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	3e-17
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	3e-17
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	5e-17
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	6e-17
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	7e-17
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	9e-17
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	1e-16
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	1e-16
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	1e-16
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	2e-16
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	2e-16
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	3e-16
cd08226	328	cd08226, PK_STRAD_beta, Pseudokinase domain of STE	1e-15
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	2e-15
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	2e-15
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	2e-15
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	3e-15
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	4e-15
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	6e-15
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	6e-15
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	7e-15
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	9e-15
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	1e-14
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	2e-14
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	2e-14
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	2e-14
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	2e-14
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	3e-14
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	4e-14
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	5e-14
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	5e-14
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	5e-14
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	5e-14
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	6e-14
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	8e-14
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	9e-14
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	9e-14
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	1e-13
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	2e-13
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	2e-13
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	3e-13
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	3e-13
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	3e-13
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	4e-13
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	4e-13
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	4e-13
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	5e-13
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	6e-13
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	7e-13
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	7e-13
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	9e-13
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	1e-12
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	1e-12
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	1e-12
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	2e-12
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	2e-12
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	3e-12
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	3e-12
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	4e-12
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	5e-12
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	7e-12
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	7e-12
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	8e-12
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	8e-12
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	9e-12
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	1e-11
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	1e-11
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	1e-11
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	1e-11
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	1e-11
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	1e-11
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	2e-11
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	2e-11
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	2e-11
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	3e-11
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	4e-11
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	5e-11
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	6e-11
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	7e-11
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	7e-11
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	8e-11
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	1e-10
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	1e-10
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	2e-10
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-10
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	2e-10
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	3e-10
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	3e-10
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	3e-10
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	3e-10
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	3e-10
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	4e-10
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	5e-10
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	6e-10
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	6e-10
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	7e-10
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	7e-10
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	8e-10
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	1e-09
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	1e-09
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	1e-09
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	2e-09
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	2e-09
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	2e-09
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	3e-09
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	4e-09
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	4e-09
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	4e-09
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	4e-09
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	5e-09
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	7e-09
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	7e-09
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	8e-09
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	1e-08
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	1e-08
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	1e-08
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	1e-08
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	1e-08
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	4e-08
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	4e-08
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	4e-08
cd05107	401	cd05107, PTKc_PDGFR_beta, Catalytic domain of the	5e-08
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	6e-08
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	6e-08
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	7e-08
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	7e-08
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	1e-07
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	2e-07
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	2e-07
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	2e-07
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	2e-07
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	2e-07
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	2e-07
cd05105	400	cd05105, PTKc_PDGFR_alpha, Catalytic domain of the	3e-07
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	3e-07
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	3e-07
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-07
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	4e-07
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	6e-07
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	7e-07
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	1e-06
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	2e-06
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	2e-06
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	3e-06
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	3e-06
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	4e-06
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	5e-06
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	6e-06
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	1e-05
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	1e-05
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	2e-05
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	2e-05
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	2e-05
cd05076	274	cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) do	3e-05
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	3e-05
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	4e-05
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	4e-05
PHA03210	501	PHA03210, PHA03210, serine/threonine kinase US3; P	1e-04
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	2e-04
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	2e-04
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	2e-04
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	3e-04
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	6e-04
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	6e-04
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	6e-04
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	9e-04
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	0.002
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	0.002
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	0.002
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	0.002
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	0.002

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score =  414 bits (1067), Expect = e-148
 Identities = 162/238 (68%), Positives = 183/238 (76%), Gaps = 33/238 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++QCDSPY+VKYYGSYFKNTDLWIVMEYCGAGSVSDIM++  KTL+E+EIA IL  TLKG
Sbjct: 52  LKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKG 111

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH  +KIHRDI                                 KAGNILLN EG A
Sbjct: 112 LEYLHSNKKIHRDI---------------------------------KAGNILLNEEGQA 138

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGV+GQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+  AD+WSLGITA+EMAEGKPP
Sbjct: 139 KLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPP 198

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           Y DIHPMRAIFMIP KPPP+  +P+ W+PEF DFV +CLVK+PEER +A ++L H FI
Sbjct: 199 YSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQHPFI 256

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score =  331 bits (850), Expect = e-115
 Identities = 124/242 (51%), Positives = 156/242 (64%), Gaps = 36/242 (14%)

Query: 3   QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLE 62
           QC SPY+ KYYGS+ K + LWI+MEYCG GS  D+++  K  L E  IA IL + L GLE
Sbjct: 55  QCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGK--LDETYIAFILREVLLGLE 112

Query: 63  YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKL 122
           YLH   KIHRDIKA                                  NILL+ EG  KL
Sbjct: 113 YLHEEGKIHRDIKAA---------------------------------NILLSEEGDVKL 139

Query: 123 ADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYG 182
           ADFGV+GQLT TM+KRNT +GTPFWMAPEVI++ GYD  AD+WSLGITA+E+A+G+PP  
Sbjct: 140 ADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLS 199

Query: 183 DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD 242
           D+HPMR +F+IP   PPS  E + ++  F DFVS CL K+P+ER +A E+L H+FI++  
Sbjct: 200 DLHPMRVLFLIPKNNPPSL-EGNKFSKPFKDFVSLCLNKDPKERPSAKELLKHKFIKKAK 258

Query: 243 TD 244
             
Sbjct: 259 KT 260

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score =  323 bits (831), Expect = e-113
 Identities = 114/237 (48%), Positives = 151/237 (63%), Gaps = 34/237 (14%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++C  P +VKYYGSY K  +LWIVME+C  GS+ D+++   +TL+E +IA +  + LKG
Sbjct: 51  LKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKG 110

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH    IHRDIKA                                  NILL ++G  
Sbjct: 111 LEYLHSNGIIHRDIKAA---------------------------------NILLTSDGEV 137

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG++ QL+DT A RNT++GTP+WMAPEVI    YD  AD+WSLGITA+E+AEGKPP
Sbjct: 138 KLIDFGLSAQLSDTKA-RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPP 196

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           Y ++ PM+A+F I T  PP  R P+ W+ EF DF+ +CL KNPE+R TA ++L H F
Sbjct: 197 YSELPPMKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score =  316 bits (813), Expect = e-110
 Identities = 110/242 (45%), Positives = 148/242 (61%), Gaps = 38/242 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++C  P +V Y+GSY +   LWIVMEYCG GS+ DI ++ +  LSE +IA +  +TLKG
Sbjct: 54  LKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKG 113

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH   KIHRDIK                                   NILL  +G  
Sbjct: 114 LAYLHETGKIHRDIKGA---------------------------------NILLTEDGDV 140

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE---IGYDCVADMWSLGITALEMAEG 177
           KLADFGV+ QLT T+AKR + IGTP+WMAPEV       GYD   D+W+LGITA+E+AE 
Sbjct: 141 KLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAEL 200

Query: 178 KPPYGDIHPMRAIFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           +PP  D+HPMRA+F+I     PPP  ++ + W+P F DF+ +CL K+P++R TA+++L H
Sbjct: 201 QPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQH 260

Query: 236 EF 237
            F
Sbjct: 261 PF 262

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score =  278 bits (713), Expect = 2e-94
 Identities = 106/243 (43%), Positives = 147/243 (60%), Gaps = 33/243 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+ C  P +V YY SY    +LW+VMEY   GS++DI+      ++E +IA +  + L+G
Sbjct: 69  MKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQG 128

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH +  IHRDIK+          D                       NILL+ +G  
Sbjct: 129 LEYLHSQNVIHRDIKS----------D-----------------------NILLSKDGSV 155

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFG A QLT   +KRN+V+GTP+WMAPEVI+   Y    D+WSLGI  +EMAEG+PP
Sbjct: 156 KLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPP 215

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           Y    P+RA+F+I TK  P  + P+ W+PEF DF+++CLVK+PE+R +A E+L H F+++
Sbjct: 216 YLREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHPFLKK 275

Query: 241 HDT 243
              
Sbjct: 276 ACP 278

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score =  274 bits (704), Expect = 3e-93
 Identities = 108/249 (43%), Positives = 143/249 (57%), Gaps = 47/249 (18%)

Query: 4   CDSPYVVKYYGSYFKNTD------LWIVMEYCGAGSVSDI---MRLRKKTLSEDEIATIL 54
            + P +  +YG++ K         LW+VME CG GSV+D+   +R + K L E+ IA IL
Sbjct: 60  SNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYIL 119

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
            +TL+GL YLH  + IHRDIK                                   NILL
Sbjct: 120 RETLRGLAYLHENKVIHRDIKGQ---------------------------------NILL 146

Query: 115 NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----EIGYDCVADMWSLGI 169
                 KL DFGV+ QL  T+ +RNT IGTP+WMAPEVI      +  YD  +D+WSLGI
Sbjct: 147 TKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGI 206

Query: 170 TALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA 229
           TA+E+A+GKPP  D+HPMRA+F IP  PPP+ + P+ W+ +F DF+S CL+KN E+R   
Sbjct: 207 TAIELADGKPPLCDMHPMRALFKIPRNPPPTLKSPENWSKKFNDFISECLIKNYEQRPFM 266

Query: 230 SEMLNHEFI 238
            E+L H FI
Sbjct: 267 EELLEHPFI 275

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score =  251 bits (643), Expect = 4e-84
 Identities = 123/246 (50%), Positives = 153/246 (62%), Gaps = 37/246 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + QCDSPY+ +YYGSY K T LWI+MEY G GS  D+  L+   L E  IATIL + LKG
Sbjct: 56  LSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDL--LKPGPLEETYIATILREILKG 113

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  RKIHRDIKA                                  N+LL+ +G  
Sbjct: 114 LDYLHSERKIHRDIKAA---------------------------------NVLLSEQGDV 140

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDT  KRNT +GTPFWMAPEVI++  YD  AD+WSLGITA+E+A+G+PP
Sbjct: 141 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPP 200

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
             D+HPMR +F+IP   PP+      ++  F +FV  CL K+P  R TA E+L H+FI R
Sbjct: 201 NSDLHPMRVLFLIPKNSPPTLEGQ--YSKPFKEFVEACLNKDPRFRPTAKELLKHKFITR 258

Query: 241 HDTDPS 246
           +    S
Sbjct: 259 YTKKTS 264

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score =  249 bits (637), Expect = 3e-83
 Identities = 121/241 (50%), Positives = 152/241 (63%), Gaps = 37/241 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + QCDSPYV KYYGSY K T LWI+MEY G GS  D+  LR     E +IAT+L + LKG
Sbjct: 56  LSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDL--LRAGPFDEFQIATMLKEILKG 113

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  +KIHRDIKA                                  N+LL+ +G  
Sbjct: 114 LDYLHSEKKIHRDIKAA---------------------------------NVLLSEQGDV 140

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDT  KRNT +GTPFWMAPEVIQ+  YD  AD+WSLGITA+E+A+G+PP
Sbjct: 141 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPP 200

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
             D+HPMR +F+IP   PP+      ++  F +F+  CL K+P  R TA E+L H+FI +
Sbjct: 201 NSDMHPMRVLFLIPKNNPPTLTGE--FSKPFKEFIDACLNKDPSFRPTAKELLKHKFIVK 258

Query: 241 H 241
           +
Sbjct: 259 N 259

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  246 bits (630), Expect = 3e-82
 Identities = 86/239 (35%), Positives = 119/239 (49%), Gaps = 36/239 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P +V+ Y  +     L++VMEYC  G + D+++ ++  LSEDE    L   L  
Sbjct: 51  LKKLKHPNIVRLYDVFEDEDKLYLVMEYCEGGDLFDLLK-KRGRLSEDEARFYLRQILSA 109

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH +  +HRD                                 LK  NILL+ +GH 
Sbjct: 110 LEYLHSKGIVHRD---------------------------------LKPENILLDEDGHV 136

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFG+A QL     K  T +GTP +MAPEV+   GY    D+WSLG+   E+  GKPP
Sbjct: 137 KLADFGLARQLDPGE-KLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPP 195

Query: 181 YGDIHPMRAIFMIPTKPPPSFREP-DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +     +  +F    KP P F  P    +PE  D + + LVK+PE+R TA E L H F 
Sbjct: 196 FPGDDQLLELFKKIGKPKPPFPPPEWDISPEAKDLIRKLLVKDPEKRLTAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score =  244 bits (625), Expect = 3e-81
 Identities = 92/244 (37%), Positives = 136/244 (55%), Gaps = 38/244 (15%)

Query: 4   CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEY 63
           C  P +V  Y +YF    LWI++E+C  G++  IM   ++ L+E +I  +    L+ L +
Sbjct: 59  CKHPNIVGLYEAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNF 118

Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
           LH  + IHRD                                 LKAGNILL  +G  KLA
Sbjct: 119 LHSHKVIHRD---------------------------------LKAGNILLTLDGDVKLA 145

Query: 124 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-----QEIGYDCVADMWSLGITALEMAEGK 178
           DFGV+ +   T+ KR+T IGTP+WMAPEV+     ++  YD  AD+WSLGIT +E+A+ +
Sbjct: 146 DFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQME 205

Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           PP+ +++PMR +  I    PP+  +P  W+  F DF+  CLVK+P++R TA+E+L H F+
Sbjct: 206 PPHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKHPFV 265

Query: 239 QRHD 242
               
Sbjct: 266 SDQS 269

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score =  240 bits (614), Expect = 1e-79
 Identities = 100/248 (40%), Positives = 132/248 (53%), Gaps = 43/248 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR--LRKKTLSEDEIATILCDTL 58
           M QC+ P VVKYY S+    +LW+VM Y   GS+ DIM+    +  L E  IAT+L + L
Sbjct: 53  MSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVL 112

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           KGLEYLH   +IHRDIKAG                                 NILL  +G
Sbjct: 113 KGLEYLHSNGQIHRDIKAG---------------------------------NILLGEDG 139

Query: 119 HAKLADFGVAGQLTDTM----AKRNTVIGTPFWMAPEVIQEI-GYDCVADMWSLGITALE 173
             K+ADFGV+  L D        R T +GTP WMAPEV++++ GYD  AD+WS GITA+E
Sbjct: 140 SVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIE 199

Query: 174 MAEGKPPYGDIHPMRAIFMIPTKPPPSF---REPDVWTPEFIDFVSRCLVKNPEERATAS 230
           +A G  PY    PM+ + +     PPS     +   ++  F   +S CL K+P +R TA 
Sbjct: 200 LATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAE 259

Query: 231 EMLNHEFI 238
           E+L H+F 
Sbjct: 260 ELLKHKFF 267

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score =  238 bits (609), Expect = 7e-79
 Identities = 120/241 (49%), Positives = 150/241 (62%), Gaps = 37/241 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + QCDSPYV KYYGSY K+T LWI+MEY G GS  D+  L    L E +IATIL + LKG
Sbjct: 56  LSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDL--LEPGPLDETQIATILREILKG 113

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  +KIHRDIKA                                  N+LL+  G  
Sbjct: 114 LDYLHSEKKIHRDIKAA---------------------------------NVLLSEHGEV 140

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDT  KRNT +GTPFWMAPEVI++  YD  AD+WSLGITA+E+A+G+PP
Sbjct: 141 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPP 200

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           + ++HPM+ +F+IP   PP+      ++    +FV  CL K P  R TA E+L H+FI R
Sbjct: 201 HSELHPMKVLFLIPKNNPPTLEGN--YSKPLKEFVEACLNKEPSFRPTAKELLKHKFIVR 258

Query: 241 H 241
            
Sbjct: 259 F 259

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score =  223 bits (570), Expect = 6e-73
 Identities = 110/247 (44%), Positives = 147/247 (59%), Gaps = 46/247 (18%)

Query: 5   DSPYVVKYYGSYFK----NTD-LWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCD 56
           D P VVK+YG Y+K    N D LW+V+E C  GSV+D+++    R + + E  IA IL +
Sbjct: 73  DHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHE 132

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
            L GL++LH+ + IHRD+K                                   NILL T
Sbjct: 133 ALMGLQHLHVNKTIHRDVKGN---------------------------------NILLTT 159

Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----EIGYDCVADMWSLGITA 171
           EG  KL DFGV+ QLT T  +RNT +GTPFWMAPEVI      +  YD   D+WSLGITA
Sbjct: 160 EGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITA 219

Query: 172 LEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
           +E+ +G PP  D+HPMRA+F IP  PPP+  +P++W+ EF DF+ +CL K+ E+R T S+
Sbjct: 220 IELGDGDPPLADLHPMRALFKIPRNPPPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSD 279

Query: 232 MLNHEFI 238
           +L H FI
Sbjct: 280 LLQHVFI 286

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score =  216 bits (553), Expect = 2e-70
 Identities = 97/247 (39%), Positives = 132/247 (53%), Gaps = 37/247 (14%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q   P + KYYGSY K   LWI+MEY   GSV  +M+     ++E  I+ I+ + L  
Sbjct: 56  LRQSQPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAGP--IAEKYISVIIREVLVA 113

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+Y+H    IHRDIKA                                  NIL+   G+ 
Sbjct: 114 LKYIHKVGVIHRDIKAA---------------------------------NILVTNTGNV 140

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKP 179
           KL DFGVA  L    +KR+T +GTP+WMAPEVI E   YD  AD+WSLGIT  EMA G P
Sbjct: 141 KLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNP 200

Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           PY D+   RA+ +IP   PP   E + ++    +FV+ CL + P+ER +A E+L  ++I+
Sbjct: 201 PYSDVDAFRAMMLIPKSKPPRL-EDNGYSKLLREFVAACLDEEPKERLSAEELLKSKWIK 259

Query: 240 RHDTDPS 246
            H   P 
Sbjct: 260 AHSKTPV 266

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score =  214 bits (548), Expect = 9e-70
 Identities = 86/232 (37%), Positives = 120/232 (51%), Gaps = 36/232 (15%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +VKY GS   +  L+I++EY   GS+  I++ +     E  +A  +   L+GL YLH 
Sbjct: 59  PNIVKYIGSIETSDSLYIILEYAENGSLRQIIK-KFGPFPESLVAVYVYQVLQGLAYLHE 117

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +  IHRDI                                 KA NIL   +G  KLADFG
Sbjct: 118 QGVIHRDI---------------------------------KAANILTTKDGVVKLADFG 144

Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHP 186
           VA +L D      +V+GTP+WMAPEVI+  G    +D+WSLG T +E+  G PPY D++P
Sbjct: 145 VATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNP 204

Query: 187 MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           M A+F I     P    P+  +PE  DF+ +C  K+P  R TA ++L H +I
Sbjct: 205 MAALFRIVQDDHPPL--PEGISPELKDFLMQCFQKDPNLRPTAKQLLKHPWI 254

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score =  211 bits (538), Expect = 9e-68
 Identities = 96/243 (39%), Positives = 128/243 (52%), Gaps = 42/243 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +QQ   P  ++Y G Y +    W+VMEYC  GS SDI+ + KK L E EIA I    L+G
Sbjct: 69  LQQLRHPNTIEYKGCYLREHTAWLVMEYC-LGSASDILEVHKKPLQEVEIAAICHGALQG 127

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH   +IHRDIKAG                                 NILL   G  
Sbjct: 128 LAYLHSHERIHRDIKAG---------------------------------NILLTEPGTV 154

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI---QEIGYDCVADMWSLGITALEMAEG 177
           KLADFG A      ++  N+ +GTP+WMAPEVI    E  YD   D+WSLGIT +E+AE 
Sbjct: 155 KLADFGSAS----LVSPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 210

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           KPP  +++ M A++ I     P+    + W+  F +FV  CL K P++R ++ E+L H F
Sbjct: 211 KPPLFNMNAMSALYHIAQNDSPTL-SSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKHRF 269

Query: 238 IQR 240
           + R
Sbjct: 270 VLR 272

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score =  210 bits (536), Expect = 1e-67
 Identities = 84/238 (35%), Positives = 131/238 (55%), Gaps = 35/238 (14%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+    P +V+ Y SY    +LW+VME+   G+++DI  +    ++E++IAT+    LK 
Sbjct: 70  MRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDI--VTHTRMNEEQIATVCLAVLKA 127

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L +LH +  IHRDIK+ S                                 ILL ++G  
Sbjct: 128 LSFLHAQGVIHRDIKSDS---------------------------------ILLTSDGRV 154

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL+DFG   Q++  + +R +++GTP+WMAPEVI  + Y    D+WSLGI  +EM +G+PP
Sbjct: 155 KLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPP 214

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           Y +  P++A+  I    PP  +     +P    F+ R LV++P +RATA+E+LNH F+
Sbjct: 215 YFNEPPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLNHPFL 272

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score =  204 bits (520), Expect = 2e-65
 Identities = 92/250 (36%), Positives = 138/250 (55%), Gaps = 46/250 (18%)

Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
            +C+SPY+V +YG+++ N D+ I MEY   GS+  I++  +  + E  +  I    LKGL
Sbjct: 54  HKCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGL 113

Query: 62  EYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            YLH + KI HRD+K                                   NIL+N+ G  
Sbjct: 114 TYLHEKHKIIHRDVKPS---------------------------------NILVNSRGQI 140

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFGV+GQL +++AK  T +GT  +MAPE IQ   Y   +D+WSLG++ +E+A G+ P
Sbjct: 141 KLCDFGVSGQLVNSLAK--TFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFP 198

Query: 181 YG--DIHPMRAIF----MIPTKPPPSFREP-DVWTPEFIDFVSRCLVKNPEERATASEML 233
           Y   +  P   IF     I  +PPP  R P   ++P+F DFV+ CL+K+P ER +  E+L
Sbjct: 199 YPPENDPPD-GIFELLQYIVNEPPP--RLPSGKFSPDFQDFVNLCLIKDPRERPSYKELL 255

Query: 234 NHEFIQRHDT 243
            H FI+++++
Sbjct: 256 EHPFIKKYES 265

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score =  203 bits (520), Expect = 2e-65
 Identities = 86/245 (35%), Positives = 124/245 (50%), Gaps = 44/245 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL 58
           +     P +V+YYGS        L I +EY   GS+S +++ +   L E  I       L
Sbjct: 53  LSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLK-KFGKLPEPVIRKYTRQIL 111

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           +GL YLH    +HRDIK                                   NIL++++G
Sbjct: 112 EGLAYLHSNGIVHRDIKGA---------------------------------NILVDSDG 138

Query: 119 HAKLADFGVAGQL--TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
             KLADFG A +L   +T     +V GTP+WMAPEVI+   Y   AD+WSLG T +EMA 
Sbjct: 139 VVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMAT 198

Query: 177 GKPPYGDIH-PMRAIFMI--PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           GKPP+ ++  PM A++ I    +PP     P+  + E  DF+ +CL ++P++R TA E+L
Sbjct: 199 GKPPWSELGNPMAALYKIGSSGEPPEI---PEHLSEEAKDFLRKCLRRDPKKRPTADELL 255

Query: 234 NHEFI 238
            H F+
Sbjct: 256 QHPFL 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score =  204 bits (520), Expect = 2e-65
 Identities = 104/242 (42%), Positives = 137/242 (56%), Gaps = 46/242 (19%)

Query: 9   VVKYYGSYFKNT------DLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGL 61
           +  YYG++ K +       LW+VME+CGAGSV+D+++  K   L ED IA I  + L+GL
Sbjct: 75  IATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGL 134

Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            +LH  + IHRDIK                                   N+LL      K
Sbjct: 135 AHLHAHKVIHRDIKGQ---------------------------------NVLLTENAEVK 161

Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----EIGYDCVADMWSLGITALEMAE 176
           L DFGV+ QL  T+ +RNT IGTP+WMAPEVI      +  YD  +D+WSLGITA+EMAE
Sbjct: 162 LVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAE 221

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE 236
           G PP  D+HPMRA+F+IP  PPP  +    W+ +FIDF+  CLVKN   R +  ++L H 
Sbjct: 222 GAPPLCDMHPMRALFLIPRNPPPKLKSKK-WSKKFIDFIEGCLVKNYLSRPSTEQLLKHP 280

Query: 237 FI 238
           FI
Sbjct: 281 FI 282

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score =  202 bits (516), Expect = 5e-65
 Identities = 101/242 (41%), Positives = 140/242 (57%), Gaps = 39/242 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+ C    +V Y+GSY +   LWI ME+CG GS+ DI  +    LSE +IA +  +TL+G
Sbjct: 60  MKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHV-TGPLSESQIAYVSRETLQG 118

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH + K+HRDIK                                   NILL   GH 
Sbjct: 119 LYYLHSKGKMHRDIKGA---------------------------------NILLTDNGHV 145

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI---QEIGYDCVADMWSLGITALEMAEG 177
           KLADFGV+ Q+T T+AKR + IGTP+WMAPEV    ++ GY+ + D+W++GITA+E+AE 
Sbjct: 146 KLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAEL 205

Query: 178 KPPYGDIHPMRAIFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           +PP  D+HPMRA+F++      PP  ++   W+  F  FV   L KNP++R TA ++L H
Sbjct: 206 QPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQH 265

Query: 236 EF 237
            F
Sbjct: 266 PF 267

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score =  203 bits (518), Expect = 7e-65
 Identities = 99/248 (39%), Positives = 138/248 (55%), Gaps = 46/248 (18%)

Query: 5   DSPYVVKYYGSYFKNT-----DLWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCD 56
           + P VVK+YG ++K        LW+V+E C  GSV+++++   +  + L E  I+ IL  
Sbjct: 77  NHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYG 136

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
            L GL++LH  R IHRD+K                                   NILL T
Sbjct: 137 ALLGLQHLHNNRIIHRDVKGN---------------------------------NILLTT 163

Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----EIGYDCVADMWSLGITA 171
           EG  KL DFGV+ QLT T  +RNT +GTPFWMAPEVI      +  YD   D+WSLGITA
Sbjct: 164 EGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITA 223

Query: 172 LEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
           +E+ +G PP  D+HP++ +F IP  PPP+   P+ W   F  F+S+CL+K+ E R + + 
Sbjct: 224 IELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTH 283

Query: 232 MLNHEFIQ 239
           +L H FI+
Sbjct: 284 LLEHPFIK 291

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score =  202 bits (515), Expect = 7e-65
 Identities = 100/242 (41%), Positives = 138/242 (57%), Gaps = 39/242 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++C    +V Y+GSY     LWI MEYCG GS+ DI  +    LSE +IA +  +TL+G
Sbjct: 60  VKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHV-TGPLSELQIAYVCRETLQG 118

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH + K+HRDIK                                   NILL   G  
Sbjct: 119 LAYLHSKGKMHRDIKGA---------------------------------NILLTDNGDV 145

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI---QEIGYDCVADMWSLGITALEMAEG 177
           KLADFGVA ++T T+AKR + IGTP+WMAPEV    +  GY+ + D+W++GITA+E+AE 
Sbjct: 146 KLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAEL 205

Query: 178 KPPYGDIHPMRAIFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           +PP  D+HPMRA+F++      PP  ++   W+  F +FV   L KNP++R TA  +L H
Sbjct: 206 QPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTH 265

Query: 236 EF 237
            F
Sbjct: 266 LF 267

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score =  202 bits (515), Expect = 9e-65
 Identities = 91/248 (36%), Positives = 138/248 (55%), Gaps = 45/248 (18%)

Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           + C+SPYVVK YG+++K  ++ IV+EY   GS++D+++ +   + E  +A I    LKGL
Sbjct: 54  RSCESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLK-KVGKIPEPVLAYIARQILKGL 112

Query: 62  EYLHLRRK-IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +YLH +R  IHRDI                                 K  N+L+N++G  
Sbjct: 113 DYLHTKRHIIHRDI---------------------------------KPSNLLINSKGEV 139

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ADFG++  L +T+ + NT +GT  +M+PE IQ   Y   AD+WSLG+T LE A GK P
Sbjct: 140 KIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFP 199

Query: 181 Y------GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           +           M+AI   P    P     + ++PEF DF+S CL K+P++R +A+E+L 
Sbjct: 200 FLPPGQPSFFELMQAICDGPPPSLP----AEEFSPEFRDFISACLQKDPKKRPSAAELLQ 255

Query: 235 HEFIQRHD 242
           H FI++ D
Sbjct: 256 HPFIKKAD 263

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  196 bits (501), Expect = 1e-62
 Identities = 76/243 (31%), Positives = 114/243 (46%), Gaps = 39/243 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P +V+   ++     L++VMEYC  G + D +  R   LSEDE   I    L+G
Sbjct: 52  LRRLSHPNIVRLIDAFEDKDHLYLVMEYCEGGDLFDYLS-RGGPLSEDEAKKIALQILRG 110

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH    IHRD                                 LK  NILL+  G  
Sbjct: 111 LEYLHSNGIIHRD---------------------------------LKPENILLDENGVV 137

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKP 179
           K+ADFG+A +L  + +   T +GTP++MAPEV+    GY    D+WSLG+   E+  GKP
Sbjct: 138 KIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVWSLGVILYELLTGKP 197

Query: 180 PYGDIHPMRAIFMI----PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           P+   + +  + +I             +    + E  D + +CL K+P +R TA E+L H
Sbjct: 198 PFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAKDLIKKCLNKDPSKRPTAEEILQH 257

Query: 236 EFI 238
            + 
Sbjct: 258 PWF 260

Length = 260

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score =  197 bits (502), Expect = 1e-62
 Identities = 91/249 (36%), Positives = 141/249 (56%), Gaps = 38/249 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +  C+ PY+VK  G+++ +  LWI++E+C  G+V  IM    + L+E +I  I    L+ 
Sbjct: 63  LATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEA 122

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  + IHRD                                 LKAGN+LL  +G  
Sbjct: 123 LQYLHSMKIIHRD---------------------------------LKAGNVLLTLDGDI 149

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-----QEIGYDCVADMWSLGITALEMA 175
           KLADFGV+ +   T+ +R++ IGTP+WMAPEV+     ++  YD  AD+WSLGIT +EMA
Sbjct: 150 KLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMA 209

Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           + +PP+ +++PMR +  I    PP+  +P  W+ EF DF+   L K+PE R +A+++L H
Sbjct: 210 QIEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLEH 269

Query: 236 EFIQRHDTD 244
            F+    ++
Sbjct: 270 PFVSSVTSN 278

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score =  193 bits (491), Expect = 5e-61
 Identities = 91/250 (36%), Positives = 140/250 (56%), Gaps = 38/250 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +  CD P +VK   +++   +LWI++E+C  G+V  +M   ++ L+E +I  +   TL+ 
Sbjct: 56  LASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEA 115

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH  + IHRD                                 LKAGNIL   +G  
Sbjct: 116 LNYLHENKIIHRD---------------------------------LKAGNILFTLDGDI 142

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-----QEIGYDCVADMWSLGITALEMA 175
           KLADFGV+ + T T+ +R++ IGTP+WMAPEV+     ++  YD  AD+WSLGIT +EMA
Sbjct: 143 KLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMA 202

Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           + +PP+ +++PMR +  I    PP+  +P  W+ EF DF+ +CL KN + R T +++L H
Sbjct: 203 QIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQH 262

Query: 236 EFIQRHDTDP 245
            F+  +   P
Sbjct: 263 PFVTVNSNKP 272

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score =  192 bits (489), Expect = 6e-61
 Identities = 101/242 (41%), Positives = 136/242 (56%), Gaps = 46/242 (19%)

Query: 9   VVKYYGSYFK------NTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGL 61
           +  YYG++ K      +  LW+VME+CGAGSV+D+++  K  TL E+ IA I  + L+GL
Sbjct: 65  IATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGL 124

Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            +LH  + IHRDIK                                   N+LL      K
Sbjct: 125 SHLHQHKVIHRDIKGQ---------------------------------NVLLTENAEVK 151

Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----EIGYDCVADMWSLGITALEMAE 176
           L DFGV+ QL  T+ +RNT IGTP+WMAPEVI      +  YD  +D+WSLGITA+EMAE
Sbjct: 152 LVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAE 211

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE 236
           G PP  D+HPMRA+F+IP  P P  +    W+ +F  F+  CLVKN  +R T  +++ H 
Sbjct: 212 GAPPLCDMHPMRALFLIPRNPAPRLKSKK-WSKKFQSFIESCLVKNHSQRPTTEQLMKHP 270

Query: 237 FI 238
           FI
Sbjct: 271 FI 272

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score =  191 bits (487), Expect = 3e-60
 Identities = 88/239 (36%), Positives = 134/239 (56%), Gaps = 35/239 (14%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M++   P +V Y  SY    +LW+VMEY   GS++D+  + +  + E +IA +  + L+ 
Sbjct: 70  MRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQA 127

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LE+LH  + IHRDIK+                                  NILL  +G  
Sbjct: 128 LEFLHSNQVIHRDIKSD---------------------------------NILLGMDGSV 154

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG   Q+T   +KR+T++GTP+WMAPEV+    Y    D+WSLGI A+EM EG+PP
Sbjct: 155 KLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPP 214

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y + +P+RA+++I T   P  + P+  +  F DF++RCL  + E+R +A E+L H F++
Sbjct: 215 YLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHPFLK 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score =  178 bits (453), Expect = 3e-55
 Identities = 85/239 (35%), Positives = 136/239 (56%), Gaps = 35/239 (14%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M++  +P +V +  S+    +L++VMEY   GS++D+  + +  + E +IA +  + L+ 
Sbjct: 70  MKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDV--VTETCMDEAQIAAVCRECLQA 127

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LE+LH  + IHRDIK+                                  N+LL  +G  
Sbjct: 128 LEFLHANQVIHRDIKSD---------------------------------NVLLGMDGSV 154

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG   Q+T   +KR+T++GTP+WMAPEV+    Y    D+WSLGI A+EM EG+PP
Sbjct: 155 KLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPP 214

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y + +P+RA+++I T   P  + P+  +P F DF++RCL  + E+R +A E+L H F++
Sbjct: 215 YLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLK 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score =  177 bits (450), Expect = 1e-54
 Identities = 88/239 (36%), Positives = 136/239 (56%), Gaps = 35/239 (14%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M++  +P +V Y  SY    +LW+VMEY   GS++D+  + +  + E +IA +  + L+ 
Sbjct: 71  MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQA 128

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LE+LH  + IHRDIK+                                  NILL  +G  
Sbjct: 129 LEFLHSNQVIHRDIKSD---------------------------------NILLGMDGSV 155

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG   Q+T   +KR+T++GTP+WMAPEV+    Y    D+WSLGI A+EM EG+PP
Sbjct: 156 KLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y + +P+RA+++I T   P  + P+  +  F DF++RCL  + E+R +A E+L H+F++
Sbjct: 216 YLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLK 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score =  177 bits (451), Expect = 1e-54
 Identities = 98/243 (40%), Positives = 129/243 (53%), Gaps = 42/243 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +QQ   P  ++Y G Y K    W+VMEYC  GS SD++ + KK L E EIA I    L+G
Sbjct: 75  LQQLKHPNTIEYKGCYLKEHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAITHGALQG 133

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH    IHRDIKAG                                 NILL   G  
Sbjct: 134 LAYLHSHNMIHRDIKAG---------------------------------NILLTEPGQV 160

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI---QEIGYDCVADMWSLGITALEMAEG 177
           KLADFG A + +      N+ +GTP+WMAPEVI    E  YD   D+WSLGIT +E+AE 
Sbjct: 161 KLADFGSASKSSPA----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 216

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           KPP  +++ M A++ I     P+ +  + WT  F  FV  CL K P+ER  ++E+L H+F
Sbjct: 217 KPPLFNMNAMSALYHIAQNDSPTLQSNE-WTDSFRGFVDYCLQKIPQERPASAELLRHDF 275

Query: 238 IQR 240
           ++R
Sbjct: 276 VRR 278

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score =  175 bits (446), Expect = 2e-54
 Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 38/241 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT---LSEDEIATILCDT 57
           +++ + P ++KYY S+ +   L IVMEY   G +S  ++ +KK      E++I       
Sbjct: 53  LKKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQL 112

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
              L+YLH R+ +HRDIK                                   NI L + 
Sbjct: 113 CLALKYLHSRKILHRDIKPQ---------------------------------NIFLTSN 139

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           G  KL DFG++  L+ T+    TV+GTP++++PE+ Q   Y+  +D+WSLG    E+   
Sbjct: 140 GLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTL 199

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           K P+   + +     I     P    P  ++ E  + VS  L K+PEER + +++L   F
Sbjct: 200 KHPFEGENLLELALKILKGQYPPI--PSQYSSELRNLVSSLLQKDPEERPSIAQILQSPF 257

Query: 238 I 238
           I
Sbjct: 258 I 258

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score =  174 bits (444), Expect = 3e-54
 Identities = 86/242 (35%), Positives = 126/242 (52%), Gaps = 43/242 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +   P +V+Y G+  +  +L+I +E    GS++ +++ +  +  E  I       L G
Sbjct: 56  LSKLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLK-KYGSFPEPVIRLYTRQILLG 114

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH R  +HRDIK                                   NIL++T G  
Sbjct: 115 LEYLHDRNTVHRDIKGA---------------------------------NILVDTNGVV 141

Query: 121 KLADFGVAGQLTD-TMAKRNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAEGK 178
           KLADFG+A Q+ + + AK  +  G+P+WMAPEVI Q+ GY   AD+WSLG T LEMA GK
Sbjct: 142 KLADFGMAKQVVEFSFAK--SFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGK 199

Query: 179 PPYGDIHPMRAIFMIPTKP--PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE 236
           PP+  +  + A+F I      PP    PD  + E  DF+ +CL ++P  R TA+E+L H 
Sbjct: 200 PPWSQLEGVAAVFKIGRSKELPPI---PDHLSDEAKDFILKCLQRDPSLRPTAAELLEHP 256

Query: 237 FI 238
           F+
Sbjct: 257 FV 258

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score =  176 bits (446), Expect = 3e-54
 Identities = 86/239 (35%), Positives = 134/239 (56%), Gaps = 35/239 (14%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M++  +P +V Y  SY    +LW+VMEY   GS++D+  + +  + E +IA +  + L+ 
Sbjct: 70  MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQA 127

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L++LH  + IHRDIK+                                  NILL  +G  
Sbjct: 128 LDFLHSNQVIHRDIKSD---------------------------------NILLGMDGSV 154

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG   Q+T   +KR+T++GTP+WMAPEV+    Y    D+WSLGI A+EM EG+PP
Sbjct: 155 KLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPP 214

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y + +P+RA+++I T   P  + P+  +  F DF++RCL  + + R +A E+L H F++
Sbjct: 215 YLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLK 273

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score =  174 bits (443), Expect = 1e-53
 Identities = 94/255 (36%), Positives = 129/255 (50%), Gaps = 55/255 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD--LWIVMEYCGAGSVSDIM-RLRKKT--LSEDEIATILC 55
            + C SPY+VKYYG++   +   + I MEYC  GS+  I  +++K+   + E  +  I  
Sbjct: 53  NKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAE 112

Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
             LKGL YLH R+ IHRDIK                                   NILL 
Sbjct: 113 SVLKGLSYLHSRKIIHRDIKPS---------------------------------NILLT 139

Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
            +G  KL DFGV+G+L +++A   T  GT F+MAPE IQ   Y   +D+WSLG+T LE+A
Sbjct: 140 RKGQVKLCDFGVSGELVNSLAG--TFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVA 197

Query: 176 --------EGKPPYGDIHPMRAIFMIPTKPPPSFR-EPDV---WTPEFIDFVSRCLVKNP 223
                   EG+PP G   P+  +  I   P P  + EP     W+ EF DF+ +CL K+P
Sbjct: 198 QNRFPFPPEGEPPLG---PIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDP 254

Query: 224 EERATASEMLNHEFI 238
             R T  +ML H +I
Sbjct: 255 TRRPTPWDMLEHPWI 269

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  170 bits (433), Expect = 4e-53
 Identities = 76/237 (32%), Positives = 109/237 (45%), Gaps = 69/237 (29%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ + P +VK YG +     L++VMEYC  GS+ D+++  +  LSEDEI  IL   L+G
Sbjct: 45  LKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEG 104

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL-NTEGH 119
           LEYLH    IHRD+                                 K  NILL +  G 
Sbjct: 105 LEYLHSNGIIHRDL---------------------------------KPENILLDSDNGK 131

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCVADMWSLGITALEMAEGK 178
            KLADFG++  LT   +   T++GTP +MAPEV+   G Y   +D+WSLG+   E+    
Sbjct: 132 VKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL---- 187

Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
                                         PE  D + + L K+PE+R +A E+L H
Sbjct: 188 ------------------------------PELKDLIRKMLQKDPEKRPSAKEILEH 214

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score =  169 bits (430), Expect = 1e-51
 Identities = 84/230 (36%), Positives = 126/230 (54%), Gaps = 35/230 (15%)

Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           VV+ Y SY    +LW++ME+   G+++DI  + +  L+E++IAT+    L+ L YLH + 
Sbjct: 80  VVEMYKSYLVGEELWVLMEFLQGGALTDI--VSQTRLNEEQIATVCESVLQALCYLHSQG 137

Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            IHRDIK+ S                                 ILL  +G  KL+DFG  
Sbjct: 138 VIHRDIKSDS---------------------------------ILLTLDGRVKLSDFGFC 164

Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR 188
            Q++  + KR +++GTP+WMAPEVI    Y    D+WSLGI  +EM +G+PPY    P++
Sbjct: 165 AQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQ 224

Query: 189 AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           A+  +   PPP  +     +P   DF+ R L + P+ERATA E+L+H F+
Sbjct: 225 AMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQELLDHPFL 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score =  169 bits (429), Expect = 2e-51
 Identities = 93/243 (38%), Positives = 125/243 (51%), Gaps = 42/243 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q+   P  ++Y G Y +    W+VMEYC  GS SD++ + KK L E EIA +    L+G
Sbjct: 69  LQKLRHPNTIQYRGCYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAVTHGALQG 127

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH    IHRD+KAG                                 NILL+  G  
Sbjct: 128 LAYLHSHNMIHRDVKAG---------------------------------NILLSEPGLV 154

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI---QEIGYDCVADMWSLGITALEMAEG 177
           KL DFG A      MA  N  +GTP+WMAPEVI    E  YD   D+WSLGIT +E+AE 
Sbjct: 155 KLGDFGSA----SIMAPANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 210

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           KPP  +++ M A++ I     P+  +   W+  F +FV  CL K P++R T+  +L H F
Sbjct: 211 KPPLFNMNAMSALYHIAQNESPAL-QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRF 269

Query: 238 IQR 240
           + R
Sbjct: 270 VLR 272

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score =  168 bits (426), Expect = 6e-51
 Identities = 95/243 (39%), Positives = 127/243 (52%), Gaps = 42/243 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q+   P  ++Y G Y +    W+VMEYC  GS SD++ + KK L E EIA I    L+G
Sbjct: 79  LQRIKHPNSIEYKGCYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAITHGALQG 137

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH    IHRDIKAG                                 NILL   G  
Sbjct: 138 LAYLHSHNMIHRDIKAG---------------------------------NILLTEPGQV 164

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI---QEIGYDCVADMWSLGITALEMAEG 177
           KLADFG A   +      N+ +GTP+WMAPEVI    E  YD   D+WSLGIT +E+AE 
Sbjct: 165 KLADFGSASIASPA----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 220

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           KPP  +++ M A++ I     P+ +  + W+  F +FV  CL K P++R T+ E+L H F
Sbjct: 221 KPPLFNMNAMSALYHIAQNESPTLQSNE-WSDYFRNFVDSCLQKIPQDRPTSEELLKHMF 279

Query: 238 IQR 240
           + R
Sbjct: 280 VLR 282

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score =  159 bits (405), Expect = 2e-48
 Identities = 72/240 (30%), Positives = 111/240 (46%), Gaps = 40/240 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + + + P++VK + ++     L++V+EY   G +   +  ++   SE+       + +  
Sbjct: 47  LSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGELFSHLS-KEGRFSEERARFYAAEIVLA 105

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH    I+RD                                 LK  NILL+ +GH 
Sbjct: 106 LEYLHSLGIIYRD---------------------------------LKPENILLDADGHI 132

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG+A +L+   ++ NT  GTP ++APEV+   GY    D WSLG+   EM  GKPP
Sbjct: 133 KLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPP 192

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER---ATASEMLNHEF 237
           +      + I+    K P  F  P+  +PE  D +S  L K+P +R     A E+  H F
Sbjct: 193 F-YAEDRKEIYEKILKDPLRF--PEFLSPEARDLISGLLQKDPTKRLGSGGAEEIKAHPF 249

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score =  160 bits (407), Expect = 3e-48
 Identities = 81/232 (34%), Positives = 127/232 (54%), Gaps = 35/232 (15%)

Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           VV+ Y SY    +LW+VME+   G+++DI+   +  ++E++IA +    LK L  LH + 
Sbjct: 79  VVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTR--MNEEQIAAVCLAVLKALSVLHAQG 136

Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            IHRDIK+ S                                 ILL  +G  KL+DFG  
Sbjct: 137 VIHRDIKSDS---------------------------------ILLTHDGRVKLSDFGFC 163

Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR 188
            Q++  + +R +++GTP+WMAPE+I  + Y    D+WSLGI  +EM +G+PPY +  P++
Sbjct: 164 AQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK 223

Query: 189 AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           A+ MI    PP  +     +P    F+ R LV++P +RATA+E+L H F+ +
Sbjct: 224 AMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAK 275

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score =  159 bits (404), Expect = 1e-47
 Identities = 88/282 (31%), Positives = 136/282 (48%), Gaps = 76/282 (26%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++ +   + E+ +  I    L+G
Sbjct: 53  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPENILGKISIAVLRG 111

Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + KI HRD+K                                   NIL+N+ G 
Sbjct: 112 LTYLREKHKIMHRDVKPS---------------------------------NILVNSRGE 138

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK- 178
            KL DFGV+GQL D+MA  N+ +GT  +M+PE +Q   Y   +D+WSLG++ +EMA G+ 
Sbjct: 139 IKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRY 196

Query: 179 --PP-----YGDIH-------------------------PMRAIF----MIPTKPPPSFR 202
             PP        +                          PM AIF     I  +PPP   
Sbjct: 197 PIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPM-AIFELLDYIVNEPPPKL- 254

Query: 203 EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD 244
               ++ EF DFV +CL KNP+ERA   E+  H FI+R + +
Sbjct: 255 PSGAFSDEFQDFVDKCLKKNPKERADLKELTKHPFIKRAELE 296

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score =  157 bits (397), Expect = 7e-47
 Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 35/231 (15%)

Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           VV  Y SY    +LW+VME+   G+++DI+   +  ++E++IAT+    L+ L YLH + 
Sbjct: 81  VVDMYNSYLVGDELWVVMEFLEGGALTDIVTHTR--MNEEQIATVCLSVLRALSYLHNQG 138

Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            IHRDIK+ S                                 ILL ++G  KL+DFG  
Sbjct: 139 VIHRDIKSDS---------------------------------ILLTSDGRIKLSDFGFC 165

Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR 188
            Q++  + KR +++GTP+WMAPEVI  + Y    D+WSLGI  +EM +G+PPY +  P++
Sbjct: 166 AQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQ 225

Query: 189 AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           A+  I    PP  ++    +     F+   LV+ P +RATA E+L H F++
Sbjct: 226 AMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQELLQHPFLK 276

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score =  154 bits (391), Expect = 5e-46
 Identities = 85/253 (33%), Positives = 125/253 (49%), Gaps = 47/253 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCDT 57
           M+  D PY V +YG+ F+  D+WI ME     S+    +    +  T+ ED +  I    
Sbjct: 54  MRSVDCPYTVTFYGALFREGDVWICMEVMDT-SLDKFYKKVYDKGLTIPEDILGKIAVSI 112

Query: 58  LKGLEYLHLRRK-IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
           +K LEYLH +   IHRD+                                 K  N+L+N 
Sbjct: 113 VKALEYLHSKLSVIHRDV---------------------------------KPSNVLINR 139

Query: 117 EGHAKLADFGVAGQLTDTMAKRNTV-IGTPFWMAPEVI----QEIGYDCVADMWSLGITA 171
            G  KL DFG++G L D++AK  T+  G   +MAPE I     + GYD  +D+WSLGIT 
Sbjct: 140 NGQVKLCDFGISGYLVDSVAK--TIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITM 197

Query: 172 LEMAEGKPPYGDIH-PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
           +E+A G+ PY     P + +  +  +P P     + ++PEF DFV++CL KN +ER    
Sbjct: 198 IELATGRFPYDSWKTPFQQLKQVVEEPSPQLPA-EKFSPEFQDFVNKCLKKNYKERPNYP 256

Query: 231 EMLNHEFIQRHDT 243
           E+L H F + H +
Sbjct: 257 ELLQHPFFELHLS 269

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score =  151 bits (384), Expect = 4e-45
 Identities = 82/246 (33%), Positives = 115/246 (46%), Gaps = 42/246 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++    P +VKYYG       ++I MEYC  G++ +++    + L E  I       L+G
Sbjct: 53  LELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEH-GRILDEHVIRVYTLQLLEG 111

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH    +HRDIK                                   NI L+  G  
Sbjct: 112 LAYLHSHGIVHRDIKPA---------------------------------NIFLDHNGVI 138

Query: 121 KLADFGVAGQL---TDTMAKR-NTVIGTPFWMAPEVIQE---IGYDCVADMWSLGITALE 173
           KL DFG A +L   T TM +   ++ GTP +MAPEVI      G+   AD+WSLG   LE
Sbjct: 139 KLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLE 198

Query: 174 MAEGKPPYGDIHPMRAI-FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
           MA GK P+ ++     I F +     P   +    +PE  DF+ RCL  +P++R TASE+
Sbjct: 199 MATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPKKRPTASEL 258

Query: 233 LNHEFI 238
           L H F+
Sbjct: 259 LQHPFV 264

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score =  146 bits (370), Expect = 4e-43
 Identities = 78/235 (33%), Positives = 114/235 (48%), Gaps = 38/235 (16%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
             +V+YYG    +  L I MEY   GSV D ++     L+E          L+G+EYLH 
Sbjct: 64  ERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLKAYG-ALTETVTRKYTRQILEGVEYLHS 122

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              +HRDI                                 K  NIL ++ G+ KL DFG
Sbjct: 123 NMIVHRDI---------------------------------KGANILRDSAGNVKLGDFG 149

Query: 127 VAGQLTDTMAK---RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD 183
            + +L    +      +V GTP+WM+PEVI   GY   AD+WS+G T +EM   KPP+ +
Sbjct: 150 ASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAE 209

Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
              M AIF I T+ P + + P   +P+  +F+ R  V+N ++R +A E+L H F+
Sbjct: 210 FEAMAAIFKIATQ-PTNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRHFFV 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score =  145 bits (368), Expect = 2e-42
 Identities = 80/253 (31%), Positives = 124/253 (49%), Gaps = 52/253 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +C SPY+V +YG++    ++ + ME+   GS+  I + +   +  + +  I    ++G
Sbjct: 57  MHECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYK-KGGPIPVEILGKIAVAVVEG 115

Query: 61  LEYLH-LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL+ + R +HRDIK                                   NIL+N+ G 
Sbjct: 116 LTYLYNVHRIMHRDIKPS---------------------------------NILVNSRGQ 142

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            KL DFGV+G+L +++A  +T +GT  +M+PE IQ   Y   +D+WSLGI+ +E+A GK 
Sbjct: 143 IKLCDFGVSGELINSIA--DTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKF 200

Query: 180 PY--------GDIHPMRAIF----MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA 227
           P+        G   PM  I      I  +PPP     D +  +  DFV  CL+K+P ER 
Sbjct: 201 PFAFSNIDDDGQDDPM-GILDLLQQIVQEPPPRLPSSD-FPEDLRDFVDACLLKDPTERP 258

Query: 228 TASEML-NHEFIQ 239
           T  ++     FIQ
Sbjct: 259 TPQQLCAMPPFIQ 271

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score =  137 bits (347), Expect = 1e-39
 Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 43/246 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++  D   +V+Y G       L I +EY   GS+   +R   +   E  +       L+G
Sbjct: 62  LKDLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGR-FEEQLVRFFTEQVLEG 120

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH +  +HRD                                 LKA N+L++ +G  
Sbjct: 121 LAYLHSKGILHRD---------------------------------LKADNLLVDADGIC 147

Query: 121 KLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQ--EIGYDCVADMWSLGITALEMAE 176
           K++DFG++ +  D     +  ++ G+ FWMAPEVI     GY    D+WSLG   LEM  
Sbjct: 148 KISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFA 207

Query: 177 GKPPYGDIHPMRAIFMIPTK---PP-PSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
           G+ P+ D   + A+F +  K   PP P     ++ +P  +DF++ C   NP+ R TA E+
Sbjct: 208 GRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNL-SPVALDFLNACFTINPDNRPTAREL 266

Query: 233 LNHEFI 238
           L H FI
Sbjct: 267 LQHPFI 272

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score =  136 bits (345), Expect = 3e-39
 Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 50/248 (20%)

Query: 3   QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLE 62
           +CDSPY++ +YG++F    + I  E+   GS+ D+ R     + E  +  I    +KGL 
Sbjct: 55  KCDSPYIIGFYGAFFVENRISICTEFMDGGSL-DVYR----KIPEHVLGRIAVAVVKGLT 109

Query: 63  YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKL 122
           YL   + +HRD+K                                   N+L+NT G  KL
Sbjct: 110 YLWSLKILHRDVKPS---------------------------------NMLVNTRGQVKL 136

Query: 123 ADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY- 181
            DFGV+ QL +++AK  T +GT  +MAPE I    Y   +D+WSLGI+ +E+A G+ PY 
Sbjct: 137 CDFGVSTQLVNSIAK--TYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYP 194

Query: 182 ------GDIHPMRAIFMIPTKPPPSFREPD-VWTPEFIDFVSRCLVKNPEERATASEMLN 234
                 G + P++ +  I  + PP    P   ++ +F+ F+++C+ K P+ER     +++
Sbjct: 195 QIQKNQGSLMPLQLLQCIVDEDPP--VLPVGQFSEKFVHFITQCMRKQPKERPAPENLMD 252

Query: 235 HEFIQRHD 242
           H FI +++
Sbjct: 253 HPFIVQYN 260

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score =  137 bits (347), Expect = 5e-39
 Identities = 92/293 (31%), Positives = 140/293 (47%), Gaps = 90/293 (30%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM----RLRKKTLSEDEIATILCD 56
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  ++    R+ ++ L +  IA I   
Sbjct: 57  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVI--- 113

Query: 57  TLKGLEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
             KGL YL  + KI HRD+K                                   NIL+N
Sbjct: 114 --KGLTYLREKHKIMHRDVKPS---------------------------------NILVN 138

Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
           + G  KL DFGV+GQL D+MA  N+ +GT  +M+PE +Q   Y   +D+WS+G++ +EMA
Sbjct: 139 SRGEIKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMA 196

Query: 176 EGK---PP------------------------------------YG-DIHPMRAIF---- 191
            G+   PP                                    YG D  P  AIF    
Sbjct: 197 IGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELLD 256

Query: 192 MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD 244
            I  +PPP      V+  EF DFV++CL+KNP ERA   +++ H FI+R + +
Sbjct: 257 YIVNEPPPKL-PSGVFGAEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSEAE 308

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score =  137 bits (346), Expect = 8e-39
 Identities = 87/291 (29%), Positives = 141/291 (48%), Gaps = 84/291 (28%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++   K + E+ +  +    L+G
Sbjct: 57  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-EAKRIPEEILGKVSIAVLRG 115

Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + +I HRD+K                                   NIL+N+ G 
Sbjct: 116 LAYLREKHQIMHRDVKPS---------------------------------NILVNSRGE 142

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK- 178
            KL DFGV+GQL D+MA  N+ +GT  +M+PE +Q   Y   +D+WS+G++ +E+A G+ 
Sbjct: 143 IKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRY 200

Query: 179 --PP---------YG------------------------------DIHPMRAIF----MI 193
             PP         +G                              D  P  AIF     I
Sbjct: 201 PIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYI 260

Query: 194 PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD 244
             +PPP      V+TP+F +FV++CL+KNP ERA    ++NH FI+R + +
Sbjct: 261 VNEPPPKLPN-GVFTPDFQEFVNKCLIKNPAERADLKMLMNHTFIKRSEVE 310

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score =  136 bits (344), Expect = 9e-39
 Identities = 78/248 (31%), Positives = 121/248 (48%), Gaps = 47/248 (18%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D PY+VK YG +  ++D++I ME   +  +  +++  +  + ED +  +    +K L YL
Sbjct: 72  DCPYIVKCYGYFITDSDVFICME-LMSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYL 130

Query: 65  HLRRK-IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
             +   IHRD+K                                   NILL+  G+ KL 
Sbjct: 131 KEKHGVIHRDVKPS---------------------------------NILLDASGNVKLC 157

Query: 124 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVI----QEIGYDCVADMWSLGITALEMAEGKP 179
           DFG++G+L D+ AK  +  G   +MAPE I        YD  AD+WSLGI+ +E+A G+ 
Sbjct: 158 DFGISGRLVDSKAKTRSA-GCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQF 216

Query: 180 PYGDIHPMRAIFMIPTK----PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           PY      +  F + TK     PPS    + ++P+F  FV  CL K+  +R    E+L H
Sbjct: 217 PY---KNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQH 273

Query: 236 EFIQRHDT 243
            FI+R++T
Sbjct: 274 PFIRRYET 281

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score =  138 bits (347), Expect = 1e-38
 Identities = 76/255 (29%), Positives = 110/255 (43%), Gaps = 55/255 (21%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR--KKTLSEDEIATILCDTLKGLEYL 64
           P +VK Y  +     L++VMEY   GS+ D+++    K  LSE E   IL   L  LEYL
Sbjct: 58  PNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYL 117

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH-AKLA 123
           H +  IHRDI                                 K  NILL+ +G   KL 
Sbjct: 118 HSKGIIHRDI---------------------------------KPENILLDRDGRVVKLI 144

Query: 124 DFGVAGQLTDTMAKR------NTVIGTPFWMAPEVIQEIG---YDCVADMWSLGITALEM 174
           DFG+A  L D  +        +T +GTP +MAPEV+  +        +D+WSLGIT  E+
Sbjct: 145 DFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYEL 204

Query: 175 AEGKPPYGDIHPMRAIFMI----------PTKPPPSFREPDVWTPEFIDFVSRCLVKNPE 224
             G PP+       A                  P S   P++ +    D + + L K+P+
Sbjct: 205 LTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLAKDPK 264

Query: 225 ERATASEMLNHEFIQ 239
            R ++S  L+H+ + 
Sbjct: 265 NRLSSSSDLSHDLLA 279

Length = 384

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score =  133 bits (336), Expect = 5e-38
 Identities = 78/238 (32%), Positives = 110/238 (46%), Gaps = 44/238 (18%)

Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           +V+Y G+   +  + I ME+   GS+S I+  R   L E          L G+ YLH   
Sbjct: 64  IVQYLGTCLDDNTISIFMEFVPGGSISSILN-RFGPLPEPVFCKYTKQILDGVAYLHNNC 122

Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            +HRDIK                                   N++L   G  KL DFG A
Sbjct: 123 VVHRDIKGN---------------------------------NVMLMPNGIIKLIDFGCA 149

Query: 129 GQLT--------DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
            +L           M K  ++ GTP+WMAPEVI E GY   +D+WS+G T  EMA GKPP
Sbjct: 150 RRLAWVGLHGTHSNMLK--SMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPP 207

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
              +  + A+F I        R PD ++   IDFV+ CL ++  ER +A ++L H+F+
Sbjct: 208 LASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLLRHDFL 265

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score =  132 bits (334), Expect = 2e-37
 Identities = 80/260 (30%), Positives = 123/260 (47%), Gaps = 54/260 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM--RLRKKTLSEDEIATILCDTL 58
           + +  SPY+V +YG++F    +++ MEY  AGS+  +    +  + + ED +  I    +
Sbjct: 53  LHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVV 112

Query: 59  KGLEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           KGL++L     I HRD+K                                   N+L+N  
Sbjct: 113 KGLKFLKEEHNIIHRDVKPT---------------------------------NVLVNGN 139

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG------YDCVADMWSLGITA 171
           G  KL DFGV+G L  ++AK N  IG   +MAPE I+  G      Y   +D+WSLG++ 
Sbjct: 140 GQVKLCDFGVSGNLVASLAKTN--IGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSI 197

Query: 172 LEMAEGKPPYGDIHPMRAIF----MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA 227
           LEMA G+ PY        IF     I    PP+   P  ++ +  DFV++CL K P  R 
Sbjct: 198 LEMALGRYPYPP-ETYANIFAQLSAIVDGDPPTL--PSGYSDDAQDFVAKCLNKIPNRRP 254

Query: 228 TASEMLNHEFI---QRHDTD 244
           T +++L H ++   +  D D
Sbjct: 255 TYAQLLEHPWLVKYKNADVD 274

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score =  131 bits (332), Expect = 4e-37
 Identities = 82/257 (31%), Positives = 121/257 (47%), Gaps = 52/257 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL----RKKTLSEDEIATILCD 56
           M+  D PY+VK+YG+ F+  D WI ME     S+    +      K  + E+ +  I   
Sbjct: 57  MRSSDCPYIVKFYGALFREGDCWICMELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVA 115

Query: 57  TLKGLEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
           T+K L YL    KI HRD+K                                   NILL+
Sbjct: 116 TVKALNYLKEELKIIHRDVKPS---------------------------------NILLD 142

Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI---QEIGYDCVADMWSLGITAL 172
             G+ KL DFG++GQL D++AK       P+ MAPE I      GYD  +D+WSLGIT  
Sbjct: 143 RNGNIKLCDFGISGQLVDSIAKTRDAGCRPY-MAPERIDPSARDGYDVRSDVWSLGITLY 201

Query: 173 EMAEGKPPYGDIHPMRAIF----MIPTKPPPSFREPD--VWTPEFIDFVSRCLVKNPEER 226
           E+A GK PY   +    +F     +    PP     +   ++P F++F++ CL+K+  +R
Sbjct: 202 EVATGKFPYPKWNS---VFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKR 258

Query: 227 ATASEMLNHEFIQRHDT 243
               E+L H FI+ ++ 
Sbjct: 259 PKYKELLEHPFIKDYEE 275

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score =  128 bits (324), Expect = 4e-36
 Identities = 76/244 (31%), Positives = 114/244 (46%), Gaps = 42/244 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++     +V+Y GS      L I +EY   GSV+ ++        E  +   +   LKG
Sbjct: 60  LKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLN-NYGAFEETLVRNFVRQILKG 118

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH R  IHRDIK                                   NIL++ +G  
Sbjct: 119 LNYLHNRGIIHRDIKGA---------------------------------NILVDNKGGI 145

Query: 121 KLADFGVAGQL------TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           K++DFG++ +L      T T   R ++ G+ FWMAPEV+++  Y   AD+WSLG   +EM
Sbjct: 146 KISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEM 205

Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
             GK P+ D   ++AIF I     P    P   + E IDF+ +    +  +R TA+E+L 
Sbjct: 206 LTGKHPFPDCTQLQAIFKIGENASPEI--PSNISSEAIDFLEKTFEIDHNKRPTAAELLK 263

Query: 235 HEFI 238
           H F+
Sbjct: 264 HPFL 267

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score =  127 bits (322), Expect = 9e-36
 Identities = 77/249 (30%), Positives = 108/249 (43%), Gaps = 46/249 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + Q  SPYVVK Y S+    +L++VMEY   G ++ ++     +L ED     + + +  
Sbjct: 47  LSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDLASLLE-NVGSLDEDVARIYIAEIVLA 105

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH    IHRD                                 LK  NIL+++ GH 
Sbjct: 106 LEYLHSNGIIHRD---------------------------------LKPDNILIDSNGHL 132

Query: 121 KLADFGV--------AGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITAL 172
           KL DFG+           L D   +   ++GTP ++APEVI   G+    D WSLG    
Sbjct: 133 KLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILY 192

Query: 173 EMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA--- 229
           E   G PP+    P   IF         + E    + E ID +S+ LV +PE+R  A   
Sbjct: 193 EFLVGIPPFHGETPE-EIFQNILNGKIEWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSI 251

Query: 230 SEMLNHEFI 238
            E+ NH F 
Sbjct: 252 EEIKNHPFF 260

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score =  126 bits (317), Expect = 3e-35
 Identities = 62/236 (26%), Positives = 114/236 (48%), Gaps = 40/236 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLK 59
           + + DS Y+++YY S+     L IVMEY   G +  ++++ R + L ED++       L 
Sbjct: 53  LAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILL 112

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL +LH ++ +HRDI                                 K+ N+ L+   +
Sbjct: 113 GLAHLHSKKILHRDI---------------------------------KSLNLFLDAYDN 139

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            K+ D GVA  L+D     NT++GTP++++PE+ ++  Y+  +D+W+LG+   E   GK 
Sbjct: 140 VKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKH 199

Query: 180 PYGDIHPMRAIF--MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           P+ D +   A+   +I    PP      +++ +    + +CL K+  +R    ++L
Sbjct: 200 PF-DANNQGALILKIIRGVFPPV---SQMYSQQLAQLIDQCLTKDYRQRPDTFQLL 251

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|214801 smart00750, KIND, kinase non-catalytic C-lobe domain

 Score =  121 bits (306), Expect = 1e-34
 Identities = 57/214 (26%), Positives = 82/214 (38%), Gaps = 53/214 (24%)

Query: 32  GSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSI 91
            S++DI+ +R + L+E+EI  +    L  L  LH + K                      
Sbjct: 1   VSLADILEVRGRPLNEEEIWAVCLQCLGALRELHRQAK---------------------- 38

Query: 92  KCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPE 151
                            +GNILL  +G  KL   G     T   +        P++MAPE
Sbjct: 39  -----------------SGNILLTWDGLLKL--DGSVAFKTPEQS-----RPDPYFMAPE 74

Query: 152 VIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPE- 210
           VIQ   Y   AD++SLGIT  E  + + PY +   + AI  I     P+    D    E 
Sbjct: 75  VIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAILEILLNGMPADDPRDRSNLEG 134

Query: 211 ------FIDFVSRCLVKNPEERATASEMLNHEFI 238
                 F DF+  C  + P+ R  A+  L H   
Sbjct: 135 VSAARSFEDFMRLCASRLPQRREAANHYLAHCRA 168

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features. Length = 176

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score =  123 bits (310), Expect = 4e-34
 Identities = 71/228 (31%), Positives = 104/228 (45%), Gaps = 38/228 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++C+ P++VK Y ++     ++++MEYC  G +  I+R R     E      +   +  
Sbjct: 47  LEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGELWTILRDRGL-FDEYTARFYIACVVLA 105

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH R  I+RD                                 LK  N+LL++ G+ 
Sbjct: 106 FEYLHNRGIIYRD---------------------------------LKPENLLLDSNGYV 132

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG A +L     K  T  GTP ++APE+I   GYD   D WSLGI   E+  G+PP
Sbjct: 133 KLVDFGFAKKLKSG-QKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPP 191

Query: 181 YG--DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
           +G  D  PM  I+    K       P+       D + + L +NPEER
Sbjct: 192 FGEDDEDPME-IYNDILKGNGKLEFPNYIDKAAKDLIKQLLRRNPEER 238

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score =  122 bits (309), Expect = 5e-34
 Identities = 66/247 (26%), Positives = 109/247 (44%), Gaps = 51/247 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCDT 57
           +Q+ + P++V  + S+    ++++V++    G     +R    +K   SE+++   +C+ 
Sbjct: 54  LQELNHPFLVNLWYSFQDEENMYLVVDLLLGGD----LRYHLSQKVKFSEEQVKFWICEI 109

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           +  LEYLH +  IHRDIK                                   NILL+ +
Sbjct: 110 VLALEYLHSKGIIHRDIKPD---------------------------------NILLDEQ 136

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           GH  + DF +A ++T       +  GTP +MAPEV+   GY    D WSLG+TA E   G
Sbjct: 137 GHVHITDFNIATKVTPD-TLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRG 195

Query: 178 KPPYGDIHPMRAI----FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER--ATASE 231
           K PY   H             T        P  W+ E ID +++ L ++P++R      +
Sbjct: 196 KRPY-RGHSRTIRDQIRAKQETADVLY---PATWSTEAIDAINKLLERDPQKRLGDNLKD 251

Query: 232 MLNHEFI 238
           + NH + 
Sbjct: 252 LKNHPYF 258

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score =  118 bits (299), Expect = 2e-32
 Identities = 64/242 (26%), Positives = 102/242 (42%), Gaps = 45/242 (18%)

Query: 7   PYVVKYYGSYF--KNTDLWIVMEYCGAGSVSDIMRLRKKT---LSEDEIATILCDTLKGL 61
           P +V+YY       N  L+IVMEYC  G ++ +++  KK    + E+ I  IL   L  L
Sbjct: 59  PNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLAL 118

Query: 62  EYLHLRRK-----IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
              H R       +HRD+K                                   NI L+ 
Sbjct: 119 YECHNRSDPGNTVLHRDLKPA---------------------------------NIFLDA 145

Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
             + KL DFG+A  L    +   T +GTP++M+PE +  + YD  +D+WSLG    E+  
Sbjct: 146 NNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCA 205

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE 236
             PP+   + ++    I        R P  ++ E  + +   L  +P++R +  E+L   
Sbjct: 206 LSPPFTARNQLQLASKIKEGKFR--RIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQLP 263

Query: 237 FI 238
            I
Sbjct: 264 LI 265

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score =  118 bits (298), Expect = 2e-32
 Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 45/242 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM---RLRKKTLSEDEIATILCDT 57
           ++Q D P V+KY  S+ +N +L IV+E   AG +S ++   + +K+ + E  I       
Sbjct: 56  LKQLDHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQL 115

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
              LE++H +R +HRDIK                                   N+ +   
Sbjct: 116 CSALEHMHSKRIMHRDIKPA---------------------------------NVFITAT 142

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           G  KL D G+    +      ++++GTP++M+PE I E GY+  +D+WSLG    EMA  
Sbjct: 143 GVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL 202

Query: 178 KPP-YGDIHPMRAIFMIPTK----PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
           + P YGD   + ++     K    P P+    D ++ E  D VSRC+  +PE+R   S +
Sbjct: 203 QSPFYGDKMNLYSLCKKIEKCDYPPLPA----DHYSEELRDLVSRCINPDPEKRPDISYV 258

Query: 233 LN 234
           L 
Sbjct: 259 LQ 260

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score =  117 bits (295), Expect = 4e-32
 Identities = 68/235 (28%), Positives = 100/235 (42%), Gaps = 44/235 (18%)

Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT---LSEDEIATILCDTLKGLE 62
            P ++ Y  ++     L IVMEY   G +S  +  RKK    + E EI  I    L+GL+
Sbjct: 58  HPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQ 117

Query: 63  YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKL 122
            LH ++ +HRD                                 LK+ NILL      K+
Sbjct: 118 ALHEQKILHRD---------------------------------LKSANILLVANDLVKI 144

Query: 123 ADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYG 182
            D G++  L   MAK  T IGTP +MAPEV +   Y   +D+WSLG    EMA   PP+ 
Sbjct: 145 GDLGISKVLKKNMAK--TQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFE 202

Query: 183 --DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
              +  +R        PP     P +++ +  +F+   L   P+ R    ++L  
Sbjct: 203 ARSMQDLRYKVQRGKYPPI----PPIYSQDLQNFIRSMLQVKPKLRPNCDKILAS 253

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score =  115 bits (291), Expect = 2e-31
 Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 38/238 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M++   P +V+  G   +   L+IV EY   G + D +R   + L+  ++  +     KG
Sbjct: 55  MKKLSHPNIVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKLTLKDLLQMALQIAKG 114

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +EYL  +  +HRD+ A                             R    N L+      
Sbjct: 115 MEYLESKNFVHRDLAA-----------------------------R----NCLVTENLVV 141

Query: 121 KLADFGVA--GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
           K++DFG++      D   KR        WMAPE +++  +   +D+WS G+   E+   G
Sbjct: 142 KISDFGLSRDIYEDDYYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLG 201

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           + PY  +     + ++          P+    E  + + +C   +PE+R T SE++  
Sbjct: 202 EQPYPGMSNEEVLELLEDGYRLPR--PENCPDELYELMLQCWAYDPEDRPTFSELVED 257

Length = 258

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score =  115 bits (289), Expect = 4e-31
 Identities = 80/238 (33%), Positives = 108/238 (45%), Gaps = 45/238 (18%)

Query: 9   VVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +V+YYG      +  L I MEY   GSV D ++     L+E          L+G+ YLH 
Sbjct: 66  IVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYG-ALTESVTRKYTRQILEGMSYLHS 124

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              +HRDI                                 K  NIL ++ G+ KL DFG
Sbjct: 125 NMIVHRDI---------------------------------KGANILRDSAGNVKLGDFG 151

Query: 127 VAGQL-TDTMAKRN--TVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD 183
            + +L T  M+     +V GTP+WM+PEVI   GY   AD+WSLG T +EM   KPP+ +
Sbjct: 152 ASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAE 211

Query: 184 IHPMRAIFMIPTKP--PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
              M AIF I T+P  P     P   +    DF+  C+      R +A E+L H F Q
Sbjct: 212 YEAMAAIFKIATQPTNPQL---PSHISEHARDFL-GCIFVEARHRPSAEELLRHPFAQ 265

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score =  114 bits (287), Expect = 1e-30
 Identities = 79/240 (32%), Positives = 118/240 (49%), Gaps = 48/240 (20%)

Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDT---LKGLEYLH 65
           +V+Y GS  +N    I ME    GS+S ++R +   L ++E  TI+  T   L+GL+YLH
Sbjct: 67  IVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNE-QTIIFYTKQILEGLKYLH 125

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-EGHAKLAD 124
             + +HRDIK                                   N+L+NT  G  K++D
Sbjct: 126 DNQIVHRDIKGD---------------------------------NVLVNTYSGVVKISD 152

Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE--IGYDCVADMWSLGITALEMAEGKPPYG 182
           FG + +L        T  GT  +MAPEVI +   GY   AD+WSLG T +EMA GKPP+ 
Sbjct: 153 FGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFI 212

Query: 183 DI-HPMRAIF---MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           ++  P  A+F   M    P      P+  + E  +F+ RC   +P++RA+A ++L   F+
Sbjct: 213 ELGEPQAAMFKVGMFKIHPEI----PESLSAEAKNFILRCFEPDPDKRASAHDLLQDPFL 268

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase adapter protein

 Score =  114 bits (287), Expect = 3e-30
 Identities = 67/275 (24%), Positives = 111/275 (40%), Gaps = 80/275 (29%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLH 65
           P ++ Y  S+  +++L++V      GS  D+++    + L E  IA IL D L  L+Y+H
Sbjct: 59  PNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIH 118

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +  IHR +                                 KA +ILL+ +G   L+  
Sbjct: 119 SKGFIHRSV---------------------------------KASHILLSGDGKVVLSGL 145

Query: 126 GVAGQLTDTMAKRNTVIGTP-------FWMAPEVIQE--IGYDCVADMWSLGITALEMAE 176
             +  +     ++  V   P        W++PEV+Q+   GY+  +D++S+GITA E+A 
Sbjct: 146 RYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELAN 205

Query: 177 GKPPYGDIHPM------------------------------RAIFMIPTK----PPPSFR 202
           G  P+ D+                                 R+    P        P  R
Sbjct: 206 GHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTR 265

Query: 203 EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
               ++  F  FV  CL ++PE R +AS++LNH F
Sbjct: 266 ---TFSEHFHQFVELCLQRDPESRPSASQLLNHSF 297

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha stabilized through ATP and MO25 may be needed to activate LKB1. Length = 314

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score =  112 bits (282), Expect = 5e-30
 Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 36/233 (15%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDE-IATILCDTLKGLEYLH 65
           P ++ YY  +  +  L I MEY   G++ D +  +K  L E+E +   L   +  + Y+H
Sbjct: 59  PNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIH 118

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
               +HRDIK    TL                             NI L   G  KL DF
Sbjct: 119 KAGILHRDIK----TL-----------------------------NIFLTKAGLIKLGDF 145

Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G++  L    +   TV+GTP++M+PE+ Q + Y+  +D+W+LG    E+   K  +   +
Sbjct: 146 GISKILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDATN 205

Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           P+  +  I            V++ E I  V   L ++PE+R TA E+L+   +
Sbjct: 206 PLNLVVKIVQGNYTP--VVSVYSSELISLVHSLLQQDPEKRPTADEVLDQPLL 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score =  114 bits (287), Expect = 6e-30
 Identities = 75/257 (29%), Positives = 113/257 (43%), Gaps = 56/257 (21%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           + P VVK +  +  N ++ +++E+   GS+            E  +A +    L G+ YL
Sbjct: 130 NHPNVVKCHDMFDHNGEIQVLLEFMDGGSLEG-----THIADEQFLADVARQILSGIAYL 184

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H R  +HRDIK                                   N+L+N+  + K+AD
Sbjct: 185 HRRHIVHRDIKPS---------------------------------NLLINSAKNVKIAD 211

Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ----EIGYD-CVADMWSLGITALEMAEGKP 179
           FGV+  L  TM   N+ +GT  +M+PE I        YD    D+WSLG++ LE   G+ 
Sbjct: 212 FGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRF 271

Query: 180 PY-----GDIHP-MRAIFMI-PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
           P+     GD    M AI M  P + P +       + EF  F+S CL + P +R +A ++
Sbjct: 272 PFGVGRQGDWASLMCAICMSQPPEAPATA------SREFRHFISCCLQREPAKRWSAMQL 325

Query: 233 LNHEFIQRHDTDPSQNG 249
           L H FI R      Q G
Sbjct: 326 LQHPFILRAQPGQGQGG 342

Length = 353

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score =  112 bits (283), Expect = 7e-30
 Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 55/227 (24%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEI----ATILCD 56
           +Q    P++V  YGS+  +++L++VMEY   G +   +R +     E       A ++  
Sbjct: 55  LQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLR-KSGRFPEPVARFYAAQVVL- 112

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
               LEYLH    ++RD                                 LK  N+LL++
Sbjct: 113 ---ALEYLHSLDIVYRD---------------------------------LKPENLLLDS 136

Query: 117 EGHAKLADFGVAGQLTD-TMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
           +G+ K+ DFG A ++   T     T+ GTP ++APE+I   GY    D W+LGI   EM 
Sbjct: 137 DGYIKITDFGFAKRVKGRTY----TLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEML 192

Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN 222
            G PP+ D +P++    I         E  V  P F    ++ L++N
Sbjct: 193 AGYPPFFDDNPIQIYEKI--------LEGKVRFPSFFSPDAKDLIRN 231

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score =  111 bits (280), Expect = 9e-30
 Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 45/237 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M++ D P VVK  G   +   L+IVMEY   G +   +R  +  LS  ++ +      +G
Sbjct: 55  MRKLDHPNVVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARG 114

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +EYL  +  IHRD+ A                             R    N L+      
Sbjct: 115 MEYLESKNFIHRDLAA-----------------------------R----NCLVGENLVV 141

Query: 121 KLADFGVAGQLTDT--MAKRNTVIGTP-FWMAPEVIQEIGYDCVADMWSLGITALEMAE- 176
           K++DFG++  L D     KR   +  P  WMAPE ++E  +   +D+WS G+   E+   
Sbjct: 142 KISDFGLSRDLYDDDYYRKRGGKL--PIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFTL 199

Query: 177 GKPPYGDIHPMRAIFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
           G+ PY  +     +  +      P     P    PE  D + +C  ++PE+R T SE
Sbjct: 200 GEQPYPGMSNEEVLEYLKNGYRLPQ----PPNCPPELYDLMLQCWAEDPEDRPTFSE 252

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score =  112 bits (281), Expect = 4e-29
 Identities = 76/282 (26%), Positives = 110/282 (39%), Gaps = 94/282 (33%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL--RKKTLSEDE----IATIL 54
           +   DSP++VK Y S+     L++VMEY   G   D+M L  RK    E+     IA ++
Sbjct: 55  LADADSPWIVKLYYSFQDEEHLYLVMEYMPGG---DLMNLLIRKDVFPEETARFYIAELV 111

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
                 L+ +H    IHRDIK                                   NIL+
Sbjct: 112 L----ALDSVHKLGFIHRDIKPD---------------------------------NILI 134

Query: 115 NTEGHAKLADFGVAGQLTDT-----------------------------MAKRNTVIGTP 145
           + +GH KLADFG+  ++                                  + N+ +GTP
Sbjct: 135 DADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTP 194

Query: 146 FWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP---------YGDIHPMRAIFMIPTK 196
            ++APEV++   Y    D WSLG+   EM  G PP         Y  I   +     P  
Sbjct: 195 DYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPPD 254

Query: 197 PPPSFREPDVWTPEFIDFVSRCLVKNPEER-ATASEMLNHEF 237
           PP         +PE ID + R L  +PE+R  +  E+ +H F
Sbjct: 255 PP--------VSPEAIDLICRLLC-DPEDRLGSFEEIKSHPF 287

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score =  109 bits (273), Expect = 9e-29
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 39/241 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---KTLSEDEIATILCDT 57
           + + D P +VK++ S+ +     I+ EYC    +   +   K   KTLSE+++       
Sbjct: 56  LSKLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQL 115

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           L G+ Y+H RR +HRD+KA                         K +F     N+L    
Sbjct: 116 LLGVHYMHQRRILHRDLKA-------------------------KNIFLKN--NLL---- 144

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              K+ DFGV+  L  +     T  GTP++M+PE ++  GYD  +D+WSLG    EM   
Sbjct: 145 ---KIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCL 201

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
              +   + +  +  I   P PS   P+ ++ +    +   L K+P  R +A+E+L + F
Sbjct: 202 AHAFEGQNFLSVVLRIVEGPTPSL--PETYSRQLNSIMQSMLNKDPSLRPSAAEILRNPF 259

Query: 238 I 238
           I
Sbjct: 260 I 260

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score =  109 bits (273), Expect = 1e-28
 Identities = 66/246 (26%), Positives = 109/246 (44%), Gaps = 49/246 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILC-DTLK 59
           M + + P++++  G+  +++   + +E+   GSVS    L K    ++ +        L+
Sbjct: 57  MARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVS--HLLSKYGAFKEAVIINYTEQLLR 114

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL YLH  + IHRD+K                                   N+L+++ G 
Sbjct: 115 GLSYLHENQIIHRDVKGA---------------------------------NLLIDSTGQ 141

Query: 120 -AKLADFGVAGQLTDTMAK----RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
             ++ADFG A +L          +  ++GT  +MAPEV++   Y    D+WS+G   +EM
Sbjct: 142 RLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEM 201

Query: 175 AEGKPPYG-DIHP--MRAIFMI--PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA 229
           A  KPP+  + H   +  IF I   T  P     P+  +P   D   RCL   PE+R  +
Sbjct: 202 ATAKPPWNAEKHSNHLALIFKIASATTAPSI---PEHLSPGLRDVTLRCLELQPEDRPPS 258

Query: 230 SEMLNH 235
            E+L H
Sbjct: 259 RELLKH 264

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score =  107 bits (269), Expect = 3e-28
 Identities = 77/237 (32%), Positives = 110/237 (46%), Gaps = 43/237 (18%)

Query: 9   VVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +V+YYG      +  L I ME+   GS+ D ++     L+E+         L+G+ YLH 
Sbjct: 66  IVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLK-SYGALTENVTRKYTRQILEGVSYLHS 124

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              +HRDI                                 K  NIL ++ G+ KL DFG
Sbjct: 125 NMIVHRDI---------------------------------KGANILRDSVGNVKLGDFG 151

Query: 127 VAGQLTDTMAKRNT----VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYG 182
            + +L  T+    T    V GTP+WM+PEVI   GY   AD+WS+G T +EM   KPP+ 
Sbjct: 152 ASKRL-QTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWA 210

Query: 183 DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           +   M AIF I T+P      P V +    DF+ R  V+  + R +A E+L H F+ 
Sbjct: 211 EFEAMAAIFKIATQPTNPVLPPHV-SDHCRDFLKRIFVE-AKLRPSADELLRHTFVH 265

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score =  107 bits (269), Expect = 8e-28
 Identities = 59/260 (22%), Positives = 101/260 (38%), Gaps = 67/260 (25%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
             P ++K Y ++    +L+ V+EY   G +   +R +  +L E        + L  LEYL
Sbjct: 60  GHPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIR-KYGSLDEKCTRFYAAEILLALEYL 118

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H +  IHRD                                 LK  NILL+ + H K+ D
Sbjct: 119 HSKGIIHRD---------------------------------LKPENILLDKDMHIKITD 145

Query: 125 FGVAGQLTDT--------------------MAKRNTVIGTPFWMAPEVIQEIGYDCVADM 164
           FG A  L                         +  + +GT  +++PE++ E      +D+
Sbjct: 146 FGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDL 205

Query: 165 WSLGITALEMAEGKPPY---GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVK 221
           W+LG    +M  GKPP+    +    + I  +       +  P  + P+  D + + LV 
Sbjct: 206 WALGCIIYQMLTGKPPFRGSNEYLTFQKILKL------EYSFPPNFPPDAKDLIEKLLVL 259

Query: 222 NPEERATAS----EMLNHEF 237
           +P++R   +    E+  H F
Sbjct: 260 DPQDRLGVNEGYDELKAHPF 279

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score =  106 bits (266), Expect = 2e-27
 Identities = 65/273 (23%), Positives = 105/273 (38%), Gaps = 74/273 (27%)

Query: 2   QQCDSPYVVKYYGSYF--KNTDLWIVMEYCG---AGSVSDIMRLRKKTLSEDEIATILCD 56
           Q+   P +V+            +++V EY      G    ++   +   +E +I   +  
Sbjct: 53  QKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDHDLTG----LLDSPEVKFTESQIKCYMKQ 108

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
            L+GL+YLH    +HRDIK                                   NIL+N 
Sbjct: 109 LLEGLQYLHSNGILHRDIKGS---------------------------------NILINN 135

Query: 117 EGHAKLADFGVAGQLTDTMAKRNT--VIGTPFWMAPEVI-QEIGYDCVADMWSLGITALE 173
           +G  KLADFG+A   T   +   T  VI T ++  PE++     Y    DMWS+G    E
Sbjct: 136 DGVLKLADFGLARPYTKRNSADYTNRVI-TLWYRPPELLLGATRYGPEVDMWSVGCILAE 194

Query: 174 MAEGKPPY---GDIHPMRAIFMI----------------------PTKPPPS-FRE--PD 205
           +  GKP +    ++  +  IF +                      P KP     RE    
Sbjct: 195 LFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKH 254

Query: 206 VWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +  P  +D + + L  +P++R +A + L HE+ 
Sbjct: 255 LIDPSALDLLDKLLTLDPKKRISADQALQHEYF 287

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score =  104 bits (263), Expect = 3e-27
 Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 46/238 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++ D P +VK  G   +   L IVMEY   G + D +R  R K LS  ++ +      +
Sbjct: 55  MRKLDHPNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIAR 114

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+EYL  +  IHRD+ A                             R    N L+     
Sbjct: 115 GMEYLESKNFIHRDLAA-----------------------------R----NCLVGENLV 141

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEMAE 176
            K++DFG++  L D       V G      WMAPE ++E  +   +D+WS G+   E+  
Sbjct: 142 VKISDFGLSRDLYDD--DYYKVKGGKLPIRWMAPESLKEGKFTSKSDVWSFGVLLWEIFT 199

Query: 177 -GKPPYGDIHPMRAIFMIPT--KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
            G+ PY  +     +  +    + P     P    PE    + +C  ++PE+R T SE
Sbjct: 200 LGEEPYPGMSNAEVLEYLKKGYRLPK----PPNCPPELYKLMLQCWAEDPEDRPTFSE 253

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score =  104 bits (262), Expect = 8e-27
 Identities = 67/270 (24%), Positives = 113/270 (41%), Gaps = 71/270 (26%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q C  PYVVK    +   +   +VMEY     +S+++R  ++ L E ++ + +   LKG
Sbjct: 53  LQACQHPYVVKLLDVFPHGSGFVLVMEYMP-SDLSEVLRDEERPLPEAQVKSYMRMLLKG 111

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + Y+H    +HRD                                 LK  N+L++ +G  
Sbjct: 112 VAYMHANGIMHRD---------------------------------LKPANLLISADGVL 138

Query: 121 KLADFGVAGQLTDTMAKRNTV--IGTPFWMAPEVI---QEIGYDCVADMWSLGITALEMA 175
           K+ADFG+A +L      R     + T ++ APE++   ++  YD   D+W++G    E+ 
Sbjct: 139 KIADFGLA-RLFSEEEPRLYSHQVATRWYRAPELLYGARK--YDPGVDLWAVGCIFAELL 195

Query: 176 EGKPPY---GDIHPMRAIFMI-----------------------PTKPPPSFRE--PDVW 207
            G P +    DI  +  +F                         P   P    E  PD  
Sbjct: 196 NGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDA- 254

Query: 208 TPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           +PE +D +   LV +P +R +A+E L H +
Sbjct: 255 SPEALDLLKGLLVYDPSKRLSAAEALRHPY 284

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score =  103 bits (260), Expect = 2e-26
 Identities = 72/259 (27%), Positives = 103/259 (39%), Gaps = 61/259 (23%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +VK          L++V EYC    +   +  R   LS + I +I+   L+GL Y H 
Sbjct: 58  PNIVKLLDVIHTERKLYLVFEYC-DMDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHS 116

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
            R +HRD                                 LK  NIL+N +G  KLADFG
Sbjct: 117 HRILHRD---------------------------------LKPQNILINRDGVLKLADFG 143

Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAEGKPPY-GD- 183
           +A      +      + T ++ APE++     Y    D+WS+G    EM  GKP + GD 
Sbjct: 144 LARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDS 203

Query: 184 -IHPMRAIFMI---PT-KPPPSFREPDVWTPEF-------------------IDFVSRCL 219
            I  +  IF I   PT +  P   +   + P F                   ID +S+ L
Sbjct: 204 EIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKML 263

Query: 220 VKNPEERATASEMLNHEFI 238
             NP +R +A E L H + 
Sbjct: 264 QYNPAKRISAKEALKHPYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score =  102 bits (256), Expect = 2e-26
 Identities = 74/235 (31%), Positives = 109/235 (46%), Gaps = 41/235 (17%)

Query: 9   VVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +V+YYG      +  L I +EY   GS+ D ++     L+E+         L+G+ YLH 
Sbjct: 66  IVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAYG-ALTENVTRRYTRQILQGVSYLHS 124

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              +HRDI                                 K  NIL ++ G+ KL DFG
Sbjct: 125 NMIVHRDI---------------------------------KGANILRDSAGNVKLGDFG 151

Query: 127 VAGQL-TDTMAKR--NTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD 183
            + ++ T  M+     +V GTP+WM+PEVI   GY   AD+WS+  T +EM   KPP+ +
Sbjct: 152 ASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAE 211

Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
              M AIF I T+P      PD  +    DF+ +  V+  + R TA  +L H F+
Sbjct: 212 YEAMAAIFKIATQPTKP-MLPDGVSDACRDFLKQIFVEE-KRRPTAEFLLRHPFV 264

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score =  102 bits (256), Expect = 3e-26
 Identities = 75/251 (29%), Positives = 111/251 (44%), Gaps = 48/251 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTL 58
           M Q +SPYV K Y S+     L++VMEY   G   D   L K    L ED     + + +
Sbjct: 51  MIQGESPYVAKLYYSFQSKDYLYLVMEYLNGG---DCASLIKTLGGLPEDWAKQYIAEVV 107

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+E LH R  IHRDIK                                   N+L++  G
Sbjct: 108 LGVEDLHQRGIIHRDIKPE---------------------------------NLLIDQTG 134

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           H KL DFG    L+    +    +GTP ++APE I  +G D ++D WSLG    E   G 
Sbjct: 135 HLKLTDFG----LSRNGLENKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGY 190

Query: 179 PPYGDIHPMRAIF--MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS---EML 233
           PP+    P  A+F  ++  +        +  +PE +D ++R L  +P +R  A+   E+ 
Sbjct: 191 PPFHAETP-DAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIK 249

Query: 234 NHEFIQRHDTD 244
           +H F +  + D
Sbjct: 250 SHPFFKSINWD 260

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score =  101 bits (255), Expect = 5e-26
 Identities = 59/252 (23%), Positives = 103/252 (40%), Gaps = 58/252 (23%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR--------LRKKTLSEDEIAT 52
           M++   P VV+  G   +   L++V+EY   G + D +R          K TLS  ++ +
Sbjct: 50  MKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLS 109

Query: 53  ILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
                 KG+EYL  ++ +HRD+ A                             R    N 
Sbjct: 110 FAIQIAKGMEYLASKKFVHRDLAA-----------------------------R----NC 136

Query: 113 LLNTEGHAKLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGIT 170
           L+  +   K++DFG++  + D    R    G  P  WMAPE +++  +   +D+WS G+ 
Sbjct: 137 LVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVL 196

Query: 171 ALEMAE-GKPPYGDIHPMRAIFMI-----PTKPPPSFREPDVWTPEFI-DFVSRCLVKNP 223
             E+   G  PY  +     +  +       KP         + P+ + + +  C   +P
Sbjct: 197 LWEIFTLGATPYPGLSNEEVLEYLRKGYRLPKPE--------YCPDELYELMLSCWQLDP 248

Query: 224 EERATASEMLNH 235
           E+R T SE++  
Sbjct: 249 EDRPTFSELVER 260

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score =  100 bits (251), Expect = 1e-25
 Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 35/183 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLK 59
           + +   P +V ++ S+ +N  L+IVMEYC  G +   I R R    SED+I +       
Sbjct: 53  LAKMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISL 112

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL+++H R+ +HRDIK+                                  NI L+  G 
Sbjct: 113 GLKHIHDRKILHRDIKSQ---------------------------------NIFLSKNGM 139

Query: 120 -AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
            AKL DFG+A QL D+M    T +GTP++++PE+ Q   Y+   D+WSLG    E+   K
Sbjct: 140 VAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLK 199

Query: 179 PPY 181
            P+
Sbjct: 200 HPF 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 99.3 bits (247), Expect = 5e-25
 Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 45/234 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCDT 57
           ++Q + P V+KYY S+ ++ +L IV+E   AG +S +++    +K+ + E  +       
Sbjct: 56  LKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQL 115

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
              LE++H RR +HRDIK                                   N+ +   
Sbjct: 116 CSALEHMHSRRVMHRDIKPA---------------------------------NVFITAT 142

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           G  KL D G+    +      ++++GTP++M+PE I E GY+  +D+WSLG    EMA  
Sbjct: 143 GVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL 202

Query: 178 KPP-YGDIHPM----RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
           + P YGD   +    + I      P PS    D ++ E    V+ C+  +PE+R
Sbjct: 203 QSPFYGDKMNLYSLCKKIEQCDYPPLPS----DHYSEELRQLVNMCINPDPEKR 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 98.7 bits (246), Expect = 6e-25
 Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 40/235 (17%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL-SEDEIATILCDTLKGLEYLH 65
           P +V+Y  S+ +N +L+IVM+YC  G +   +  ++  L  ED+I          L+++H
Sbjct: 59  PNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVH 118

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            R+ +HRDI                                 K+ NI L  +G  KL DF
Sbjct: 119 DRKILHRDI---------------------------------KSQNIFLTKDGTIKLGDF 145

Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY--GD 183
           G+A  L  T+    T IGTP++++PE+ +   Y+  +D+W+LG    EM   K  +  G+
Sbjct: 146 GIARVLNSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAGN 205

Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +  +    +  + PP S      ++ +  + VS+   +NP +R + + +L   FI
Sbjct: 206 MKNLVLKIIRGSYPPVSSH----YSYDLRNLVSQLFKRNPRDRPSVNSILEKNFI 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 98.5 bits (246), Expect = 1e-24
 Identities = 62/267 (23%), Positives = 108/267 (40%), Gaps = 65/267 (24%)

Query: 1   MQQCDSPYVVKYY----GSYFKN-TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILC 55
           ++  + P +V+      G        L +V E+      + + +  K  L  + I  ++ 
Sbjct: 55  LESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMR 114

Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
             L+G+++LH  R +HRD                                 LK  NIL+ 
Sbjct: 115 QLLRGVDFLHSHRIVHRD---------------------------------LKPQNILVT 141

Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
           ++G  K+ADFG+A   +  MA   +V+ T ++ APEV+ +  Y    DMWS+G    E+ 
Sbjct: 142 SDGQVKIADFGLARIYSFEMA-LTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELF 200

Query: 176 EGKP---PYGDIHPMRAIFMI--------------------PTKPPPSFRE--PDVWTPE 210
             +P      +   +  IF +                    P+  P SF+   P++   E
Sbjct: 201 RRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEI-CEE 259

Query: 211 FIDFVSRCLVKNPEERATASEMLNHEF 237
            +D + + L  NP +R +A E L H +
Sbjct: 260 GLDLLKKMLTFNPHKRISAFEALQHPY 286

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 96.8 bits (241), Expect = 7e-24
 Identities = 69/249 (27%), Positives = 114/249 (45%), Gaps = 47/249 (18%)

Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
            P++V  + ++  +T L ++++Y   G +   +  R+   +E E+   + + +  L++LH
Sbjct: 64  CPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQREH-FTESEVRVYIAEIVLALDHLH 122

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
               I+RDIK          L+                       NILL++EGH  L DF
Sbjct: 123 QLGIIYRDIK----------LE-----------------------NILLDSEGHVVLTDF 149

Query: 126 GVAGQ-LTDTMAKRNTVIGTPFWMAPEVIQ--EIGYDCVADMWSLGITALEMAEGKPPY- 181
           G++ + L +   +  +  GT  +MAPEVI+    G+D   D WSLG+   E+  G  P+ 
Sbjct: 150 GLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFT 209

Query: 182 --GDIHPMRAIFM-IPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER---ATASEMLNH 235
             G+ +    I   I    PP    P   + E  DF+ + L K+P++R     A E+ NH
Sbjct: 210 VDGEQNSQSEISRRILKSKPPF---PKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNH 266

Query: 236 EFIQRHDTD 244
            F Q  D D
Sbjct: 267 PFFQGIDWD 275

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 96.4 bits (240), Expect = 9e-24
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 43/183 (23%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK---TLSEDEIATILCDTLKGLEY 63
           P++++ + +      L+++MEY   G +   +R   +   +      + I+C     LEY
Sbjct: 61  PFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVC----ALEY 116

Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
           LH +  ++RD                                 LK  NILL+ EGH KL 
Sbjct: 117 LHSKEIVYRD---------------------------------LKPENILLDKEGHIKLT 143

Query: 124 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD 183
           DFG A +L D   +  T+ GTP ++APEVIQ  G++   D W+LGI   EM  G PP+ D
Sbjct: 144 DFGFAKKLRD---RTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFD 200

Query: 184 IHP 186
            +P
Sbjct: 201 DNP 203

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 94.7 bits (235), Expect = 3e-23
 Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 45/234 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDT 57
           ++Q + P V+KY  S+ ++ +L IV+E   AG +S +++    +K+ + E  +       
Sbjct: 56  LKQLNHPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQL 115

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
              +E++H RR +HRDIK                                   N+ +   
Sbjct: 116 CSAVEHMHSRRVMHRDIKPA---------------------------------NVFITAT 142

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           G  KL D G+    +      ++++GTP++M+PE I E GY+  +D+WSLG    EMA  
Sbjct: 143 GVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL 202

Query: 178 KPP-YGDIHPM----RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
           + P YGD   +    + I      P P+    + ++ +  + VS C+  +P++R
Sbjct: 203 QSPFYGDKMNLFSLCQKIEQCDYPPLPT----EHYSEKLRELVSMCIYPDPDQR 252

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 94.0 bits (234), Expect = 1e-22
 Identities = 63/243 (25%), Positives = 101/243 (41%), Gaps = 54/243 (22%)

Query: 7   PYVVKYYGSYFKNTD-LWIVMEYCGAGSVSDIM----RLRKKTLSEDEIATILCDTLKGL 61
           P++ + + S F+  D L+ VMEY   G   D+M    R  +    E        + + GL
Sbjct: 56  PFLTQLH-SCFQTKDRLFFVMEYVNGG---DLMFHIQRSGR--FDEPRARFYAAEIVLGL 109

Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
           ++LH R  I+RD+K          LD                       N+LL++EGH K
Sbjct: 110 QFLHERGIIYRDLK----------LD-----------------------NVLLDSEGHIK 136

Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           +ADFG+  +        +T  GTP ++APE++    Y    D W+LG+   EM  G+ P+
Sbjct: 137 IADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPF 196

Query: 182 ---GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
               +    ++I     + P    +      E    +   L KNPE+R         + I
Sbjct: 197 EGDDEDELFQSILEDEVRYPRWLSK------EAKSILKSFLTKNPEKRLGCLPTGEQD-I 249

Query: 239 QRH 241
           + H
Sbjct: 250 KGH 252

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 92.2 bits (230), Expect = 5e-22
 Identities = 70/266 (26%), Positives = 103/266 (38%), Gaps = 90/266 (33%)

Query: 21  DLWIVMEYCGAGSVSDIMRL--RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS 78
           D++IV E       +D+ ++    + L++D I   L   L+GL+YLH    IHRD     
Sbjct: 78  DVYIVTELME----TDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHRD----- 128

Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA---------- 128
                                       LK  NIL+N+    K+ DFG+A          
Sbjct: 129 ----------------------------LKPSNILVNSNCDLKICDFGLARGVDPDEDEK 160

Query: 129 GQLTDTMAKRNTVIGTPFWM-APEVI-QEIGYDCVADMWSLGITALEMAEGKP--PYGD- 183
           G LT+ +  R        W  APE++     Y    D+WS+G    E+   KP  P  D 
Sbjct: 161 GFLTEYVVTR--------WYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDY 212

Query: 184 IHPMRAIF------------------------MIPTKPPPSFRE--PDVWTPEFIDFVSR 217
           I  +  I                          +P KP     +  P   +PE ID + +
Sbjct: 213 IDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGA-SPEAIDLLEK 271

Query: 218 CLVKNPEERATASEMLNHEFI-QRHD 242
            LV +P++R TA E L H ++ Q HD
Sbjct: 272 MLVFDPKKRITADEALAHPYLAQLHD 297

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 91.4 bits (228), Expect = 7e-22
 Identities = 65/267 (24%), Positives = 110/267 (41%), Gaps = 78/267 (29%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLH 65
           P +VK    + +N +L+ V EY   G++  +M+ RK K  SE  I +I+   L+GL ++H
Sbjct: 58  PNIVKLKEVFRENDELYFVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIH 116

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
                HRD                                 LK  N+L++     K+ADF
Sbjct: 117 KHGFFHRD---------------------------------LKPENLLVSGPEVVKIADF 143

Query: 126 GVAGQL------TDTMAKRNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAEGK 178
           G+A ++      TD        + T ++ APE++ +   Y    D+W+LG    E+   +
Sbjct: 144 GLAREIRSRPPYTD-------YVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLR 196

Query: 179 P--PYGD----IHPMRAI--------------------FMIPTKPPPSFRE--PDVWTPE 210
           P  P       ++ + ++                    F  P   P S  +  P+  +PE
Sbjct: 197 PLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNA-SPE 255

Query: 211 FIDFVSRCLVKNPEERATASEMLNHEF 237
            ID +   L  +P++R TAS+ L H +
Sbjct: 256 AIDLIKDMLRWDPKKRPTASQALQHPY 282

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 91.4 bits (227), Expect = 1e-21
 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 39/189 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILC-DTLK 59
           + +   P++V    S+     ++ ++E+   G +     LRK     +++A     + + 
Sbjct: 72  LMELSHPFIVNMMCSFQDENRVYFLLEFVVGGEL--FTHLRKAGRFPNDVAKFYHAELVL 129

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
             EYLH +  I+RD                                 LK  N+LL+ +GH
Sbjct: 130 AFEYLHSKDIIYRD---------------------------------LKPENLLLDNKGH 156

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            K+ DFG A ++ D   +  T+ GTP ++APEVIQ  G+    D W++G+   E   G P
Sbjct: 157 VKVTDFGFAKKVPD---RTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYP 213

Query: 180 PYGDIHPMR 188
           P+ D  P R
Sbjct: 214 PFFDDTPFR 222

Length = 329

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 89.6 bits (222), Expect = 2e-21
 Identities = 63/231 (27%), Positives = 101/231 (43%), Gaps = 42/231 (18%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLH 65
           P +V +  S+  +  L+IVMEYC  G +   ++L++ K   ED I         G++++H
Sbjct: 58  PNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIH 117

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R +HRDI                                 K+ NI L   G  KL DF
Sbjct: 118 EKRVLHRDI---------------------------------KSKNIFLTQNGKVKLGDF 144

Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G A  LT   A   T +GTP+++ PE+ + + Y+  +D+WSLG    E+   K P+    
Sbjct: 145 GSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANS 204

Query: 186 PMRAIFMI---PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
               I  +     KP PS      ++ E    + +   +NP  R +A+ +L
Sbjct: 205 WKNLILKVCQGSYKPLPSH-----YSYELRSLIKQMFKRNPRSRPSATTIL 250

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related kinase adapter protein alpha

 Score = 88.8 bits (220), Expect = 9e-21
 Identities = 75/288 (26%), Positives = 124/288 (43%), Gaps = 74/288 (25%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLH 65
           P +V Y  ++  + +LW+V  +   GS  D++       +SE  IA IL   LK L+Y+H
Sbjct: 59  PNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIH 118

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA-D 124
               +HR +KA    +  D              ++Y  L  L++   ++N     ++  D
Sbjct: 119 HMGYVHRSVKASHILISVD-------------GKVY--LSGLRSNLSMINHGQRLRVVHD 163

Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE--IGYDCVADMWSLGITALEMAEGKPPYG 182
           F            + +V   P W++PEV+Q+   GYD  +D++S+GITA E+A G  P+ 
Sbjct: 164 F-----------PKYSVKVLP-WLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFK 211

Query: 183 DIH----------------------PMRAIFMIPTK---------------PPPSFREPD 205
           D+                       P   + M P++               P PS  E  
Sbjct: 212 DMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESS 271

Query: 206 V------WTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ 247
                  ++P F  FV +CL +NP+ R +AS +LNH F ++     S+
Sbjct: 272 SHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIKRRASE 319

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. The structure of STRAD-alpha is available and shows that this protein binds ATP, has an ordered activation loop, and adopts a closed conformation typical of fully active protein kinases. It does not possess activity due to nonconservative substitutions of essential catalytic residues. ATP binding enhances the affinity of STRAD for MO25. The conformation of STRAD-alpha, stabilized through ATP and MO25, may be needed to activate LKB1. A mutation which results in a truncation of a C-terminal part of the human STRAD-alpha pseudokinase domain and disrupts its association with LKB1, leads to PMSE (polyhydramnios, megalencephaly, symptomatic epilepsy) syndrome. Several splice variants of STRAD-alpha exist which exhibit different effects on the localization and activation of LKB1. Length = 327

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 87.6 bits (217), Expect = 1e-20
 Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 45/232 (19%)

Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDI---MRLRKKTLSEDEIATILCDTL 58
           +Q   P +V+YY ++ +N  L+IVM+      + +    ++ +K+  +E+ I  I    +
Sbjct: 64  EQLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMV 123

Query: 59  KGLEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
             L YLH  ++I HRD                                 L   NI+L  +
Sbjct: 124 LALRYLHKEKRIVHRD---------------------------------LTPNNIMLGED 150

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
               + DFG+A Q     +K  +V+GT  +  PE+++   Y   AD+W+ G    +M   
Sbjct: 151 DKVTITDFGLAKQKQPE-SKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTL 209

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREP---DVWTPEFIDFVSRCLVKNPEER 226
           +PP+   +    +  + TK   +  EP    +++ +  D ++ CL  + E R
Sbjct: 210 QPPFYSTN----MLSLATKIVEAVYEPLPEGMYSEDVTDVITSCLTPDAEAR 257

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 87.8 bits (218), Expect = 1e-20
 Identities = 61/274 (22%), Positives = 108/274 (39%), Gaps = 78/274 (28%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ + P ++K    +    DL++V E+     +  +++ R++ L E  I + L   L+G
Sbjct: 52  LKELNHPNIIKLLDVFRHKGDLYLVFEFMDT-DLYKLIKDRQRGLPESLIKSYLYQLLQG 110

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L + H    +HRD                                 LK  N+L+NTEG  
Sbjct: 111 LAFCHSHGILHRD---------------------------------LKPENLLINTEGVL 137

Query: 121 KLADFGVA-------GQLTDTMAKRNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITAL 172
           KLADFG+A          T  +  R       ++ APE++  + GY    D+WS+G    
Sbjct: 138 KLADFGLARSFGSPVRPYTHYVVTR-------WYRAPELLLGDKGYSTPVDIWSVGCIFA 190

Query: 173 EMAEGKPPYGDIHPMRAIFMI--------------------------PTKPPPSFRE--P 204
           E+   +P +     +  +F I                          P K      +  P
Sbjct: 191 ELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFP 250

Query: 205 DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +  +P+ +D +S+ L  +P +R TA + L H + 
Sbjct: 251 NA-SPQALDLLSQMLHYDPHKRITAEQALAHPYF 283

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 87.3 bits (216), Expect = 1e-20
 Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 41/242 (16%)

Query: 1   MQQCDSPYVVKYYGSY-FKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTL 58
           + Q   P +V Y  S+  ++  L+IVM +C  G +   ++ +K K L E+++        
Sbjct: 53  LSQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIA 112

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             L+YLH +  +HRD                                 LK  N+ L    
Sbjct: 113 MALQYLHEKHILHRD---------------------------------LKTQNVFLTRTN 139

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
             K+ D G+A  L +     +T+IGTP++M+PE+     Y+  +D+W+LG    EMA  K
Sbjct: 140 IIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLK 199

Query: 179 PPYGDIHPMRAIF--MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE 236
             + +   M ++   +I  K PP    P  ++PE  + ++  L K PE+R +   +L   
Sbjct: 200 HAF-NAKDMNSLVYRIIEGKLPPM---PKDYSPELGELIATMLSKRPEKRPSVKSILRQP 255

Query: 237 FI 238
           +I
Sbjct: 256 YI 257

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 87.8 bits (218), Expect = 3e-20
 Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 76/219 (34%)

Query: 3   QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL--RKKTLSEDEIATILCDTLKG 60
           + D+P+VVK Y S+     L+++MEY   G   D+M L  +K T +E+E    + +T+  
Sbjct: 57  EADNPWVVKLYYSFQDENYLYLIMEYLPGG---DMMTLLMKKDTFTEEETRFYIAETILA 113

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++ +H    IHRDI                                 K  N+LL+ +GH 
Sbjct: 114 IDSIHKLGYIHRDI---------------------------------KPDNLLLDAKGHI 140

Query: 121 KLADFG----------------VAGQLTDTMA----------------KRN------TVI 142
           KL+DFG                ++  L                     KRN      + +
Sbjct: 141 KLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTV 200

Query: 143 GTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           GTP ++APEV  + GY+   D WSLG+   EM  G PP+
Sbjct: 201 GTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPF 239

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 87.1 bits (216), Expect = 4e-20
 Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 50/251 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +    S ++VK   ++  +  L++ MEY   G    ++      LSED     + +  + 
Sbjct: 55  LTTTKSEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLN-NLGVLSEDHARFYMAEMFEA 113

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++ LH    IHRD                                 LK  N L++  GH 
Sbjct: 114 VDALHELGYIHRD---------------------------------LKPENFLIDASGHI 140

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG++      +   N+V+G+P +MAPEV++  GYD   D WSLG    E   G PP
Sbjct: 141 KLTDFGLS---KGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPP 197

Query: 181 Y-GD--------IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
           + G         +   +     P    P F      + E  D +++ +        +  +
Sbjct: 198 FSGSTPNETWENLKYWKETLQRPVYDDPRFN----LSDEAWDLITKLINDPSRRFGSLED 253

Query: 232 MLNHEFIQRHD 242
           + NH F +  D
Sbjct: 254 IKNHPFFKEVD 264

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 86.7 bits (215), Expect = 6e-20
 Identities = 65/228 (28%), Positives = 96/228 (42%), Gaps = 44/228 (19%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLKGLEYLH 65
           P++V  +  +     +  VMEY   G   D+M  +     SE          + GL+YLH
Sbjct: 62  PFLVNLFACFQTEDHVCFVMEYAAGG---DLMMHIHTDVFSEPRAVFYAACVVLGLQYLH 118

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
             + ++RD+K          LD                       N+LL+TEG  K+ADF
Sbjct: 119 ENKIVYRDLK----------LD-----------------------NLLLDTEGFVKIADF 145

Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY-GDI 184
           G+  +      + +T  GTP ++APEV+ E  Y    D W LG+   EM  G+ P+ GD 
Sbjct: 146 GLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDD 205

Query: 185 HPMRAIF-MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
                +F  I        R P   + E I  + R L +NPE R  + E
Sbjct: 206 E--EEVFDSIVNDEV---RYPRFLSREAISIMRRLLRRNPERRLGSGE 248

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 86.6 bits (215), Expect = 8e-20
 Identities = 65/256 (25%), Positives = 108/256 (42%), Gaps = 69/256 (26%)

Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  LS+D I  ++   L+GL+Y+H    IHRD      
Sbjct: 93  QDVYLVTHLMGA-DLNNIVKCQK--LSDDHIQFLVYQILRGLKYIHSAGIIHRD------ 143

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  NI +N +   K+ DFG+A    D M    
Sbjct: 144 ---------------------------LKPSNIAVNEDCELKILDFGLARHTDDEM---T 173

Query: 140 TVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAEGKP--PYGD-IHPMRAIF---- 191
             + T ++ APE++   + Y+   D+WS+G    E+  GK   P  D I  ++ I     
Sbjct: 174 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVG 233

Query: 192 --------------------MIPTKPPPSFREPDVW-TPEFIDFVSRCLVKNPEERATAS 230
                                +P  P   F+E      P  ID + + LV +P++R TA+
Sbjct: 234 TPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAA 293

Query: 231 EMLNHEFI-QRHDTDP 245
           E L H ++ + HD + 
Sbjct: 294 EALAHPYLAEYHDPED 309

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 82.6 bits (204), Expect = 6e-19
 Identities = 59/234 (25%), Positives = 106/234 (45%), Gaps = 44/234 (18%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++YY ++ ++  L IVMEY   G++++ I +     L ED I       L  L ++H
Sbjct: 59  PNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVH 118

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA-KLAD 124
            +  +HRD                                 LK  NILL+      K+ D
Sbjct: 119 TKLILHRD---------------------------------LKTQNILLDKHKMVVKIGD 145

Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDI 184
           FG++  L+ + +K  TV+GTP +++PE+ +   Y+  +D+W+LG    E+A  K  + + 
Sbjct: 146 FGISKILS-SKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAF-EA 203

Query: 185 HPMRAI---FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
             + A+    M  T  P S    D ++P+    +   L  +P +R   S+++  
Sbjct: 204 ANLPALVLKIMSGTFAPIS----DRYSPDLRQLILSMLNLDPSKRPQLSQIMAQ 253

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 83.4 bits (206), Expect = 7e-19
 Identities = 52/160 (32%), Positives = 75/160 (46%), Gaps = 15/160 (9%)

Query: 89  CSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWM 148
           C+++     N IY+ L   K  NILL+ +GH  L DFG+         K NT  GTP ++
Sbjct: 104 CALENLHKFNVIYRDL---KPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYL 160

Query: 149 APEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD--IHPM-RAIFMIPTKPPPSFREPD 205
           APE++   GY    D W+LG+   EM  G PP+ D  ++ M R I   P + P  F    
Sbjct: 161 APELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQEPLRFPDGFDR-- 218

Query: 206 VWTPEFIDFVSRCLVKNPEER---ATASEMLNHEFIQRHD 242
               +  D +   L ++P  R     A E+ NH F  +  
Sbjct: 219 ----DAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQLS 254

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 83.4 bits (206), Expect = 1e-18
 Identities = 53/176 (30%), Positives = 75/176 (42%), Gaps = 36/176 (20%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P++   +  +     L+ VMEY   G +   I R RK    E        +    L +LH
Sbjct: 56  PFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQRSRK--FDEPRSRFYAAEVTLALMFLH 113

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
               I+RD+K          LD                       NILL+ EGH KLADF
Sbjct: 114 RHGVIYRDLK----------LD-----------------------NILLDAEGHCKLADF 140

Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           G+  +         T  GTP ++APE++QE+ Y    D W+LG+   EM  G+PP+
Sbjct: 141 GMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPF 196

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 83.3 bits (206), Expect = 1e-18
 Identities = 61/253 (24%), Positives = 100/253 (39%), Gaps = 58/253 (22%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +   +SP++ +   ++    +L++VMEY   G +  ++   +    ED     L + +  
Sbjct: 55  LSISNSPWIPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLA 114

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +  +H    +HRDIK                                   N+L++  GH 
Sbjct: 115 IHSVHQMGYVHRDIKPE---------------------------------NVLIDRTGHI 141

Query: 121 KLADFGVAGQLT-DTMAKRNTVIGTPFWMAPEVIQEIG------YDCVADMWSLGITALE 173
           KLADFG A +LT + M      +GTP ++APEV+  +       Y    D WSLG+ A E
Sbjct: 142 KLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYE 201

Query: 174 MAEGKPP---------YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE 224
           M  G+ P         Y +I   +     P  P  S         +F+D +   L+   +
Sbjct: 202 MIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVS--------SDFLDLIQS-LLCGQK 252

Query: 225 ERATASEMLNHEF 237
           ER     +  H F
Sbjct: 253 ERLGYEGLCCHPF 265

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 82.6 bits (205), Expect = 2e-18
 Identities = 71/274 (25%), Positives = 107/274 (39%), Gaps = 95/274 (34%)

Query: 19  NTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG 77
           + D+++V EY      +D+   +R   L +     I+   LK L+Y+H    IHRD    
Sbjct: 81  DKDIYLVFEYME----TDLHAVIRANILEDVHKRYIMYQLLKALKYIHSGNVIHRD---- 132

Query: 78  SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA--------- 128
                                        LK  NILLN++   KLADFG+A         
Sbjct: 133 -----------------------------LKPSNILLNSDCRVKLADFGLARSLSELEEN 163

Query: 129 ---GQLTDTMAKRNTVIGTPFWM-APEVIQEIG---YDCVADMWSLGITALEMAEGKPPY 181
                LTD +A R        W  APE++  +G   Y    DMWS+G    EM  GKP +
Sbjct: 164 PENPVLTDYVATR--------WYRAPEIL--LGSTRYTKGVDMWSVGCILGEMLLGKPLF 213

Query: 182 ---------------------GDIHPMRAIF------MIPTKPPPSFRE--PDVWTPEFI 212
                                 DI  +++ F       +P++P     E  P   + + +
Sbjct: 214 PGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKA-SDDAL 272

Query: 213 DFVSRCLVKNPEERATASEMLNHEFIQR-HDTDP 245
           D + + LV NP +R TA E L H ++ + H+   
Sbjct: 273 DLLKKLLVFNPNKRLTAEEALEHPYVAQFHNPSD 306

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 82.5 bits (204), Expect = 2e-18
 Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 44/235 (18%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTLKGLEYL 64
           P++   + ++     L+ VMEY   G   D+M   + +   DE        + + GL++L
Sbjct: 56  PFLTHLFCTFQTKEHLFFVMEYLNGG---DLMFHIQSSGRFDEARARFYAAEIICGLQFL 112

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H +  I+RD+K          LD                       N+LL+ +GH K+AD
Sbjct: 113 HKKGIIYRDLK----------LD-----------------------NVLLDKDGHIKIAD 139

Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY-GD 183
           FG+  +  +   K +T  GTP ++APE+++   Y+   D WS G+   EM  G+ P+ G+
Sbjct: 140 FGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGE 199

Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-ATASEMLNHEF 237
                 +F       P F  P   + E  D +S+   ++P +R     ++  H F
Sbjct: 200 DE--DELFDSILNDRPHF--PRWISKEAKDCLSKLFERDPTKRLGVDGDIRQHPF 250

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 81.6 bits (201), Expect = 3e-18
 Identities = 61/250 (24%), Positives = 112/250 (44%), Gaps = 47/250 (18%)

Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           SP++V  + ++  +T L ++++Y   G +   +  R++   E E+     + +  LE+LH
Sbjct: 64  SPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQRER-FKEQEVQIYSGEIVLALEHLH 122

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
               I+RDIK                                   NILL++ GH  L DF
Sbjct: 123 KLGIIYRDIKLE---------------------------------NILLDSNGHVVLTDF 149

Query: 126 GVAGQ-LTDTMAKRNTVIGTPFWMAPEVIQ--EIGYDCVADMWSLGITALEMAEGKPPY- 181
           G++ +   D + +  +  GT  +MAP++++  + G+D   D WS+G+   E+  G  P+ 
Sbjct: 150 GLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFT 209

Query: 182 --GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLN 234
             G+ +    I     K  P +  P   +    D + R L+K+P++R     + A E+  
Sbjct: 210 VDGEKNSQAEISRRILKSEPPY--PQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKK 267

Query: 235 HEFIQRHDTD 244
           H F Q+ + D
Sbjct: 268 HPFFQKINWD 277

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 81.9 bits (202), Expect = 3e-18
 Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 46/248 (18%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
            SP++V  + ++     L ++++Y   G +   +  R    SEDE+     + +  LE+L
Sbjct: 63  QSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQRDN-FSEDEVRFYSGEIILALEHL 121

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H    ++RDIK                                   NILL++EGH  L D
Sbjct: 122 HKLGIVYRDIKLE---------------------------------NILLDSEGHVVLTD 148

Query: 125 FGVAGQ-LTDTMAKRNTVIGTPFWMAPEVIQ-EIGYDCVADMWSLGITALEMAEGKPPY- 181
           FG++ + L++   +  +  GT  +MAPE+I+ + G+    D WSLGI   E+  G  P+ 
Sbjct: 149 FGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFT 208

Query: 182 --GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLN 234
             G+ +    +     K  P F  P    PE  D + + L K+P++R       ASE+  
Sbjct: 209 LEGERNTQSEVSRRILKCDPPF--PSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKE 266

Query: 235 HEFIQRHD 242
           H F +  D
Sbjct: 267 HPFFKGLD 274

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 81.9 bits (203), Expect = 3e-18
 Identities = 70/271 (25%), Positives = 103/271 (38%), Gaps = 76/271 (28%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT----LSEDEIATILCDTLKG 60
           D P++   Y S+   T L +VM+YC  G   ++ RL ++     LSE+       + L  
Sbjct: 59  DHPFLPTLYASFQTETYLCLVMDYCPGG---ELFRLLQRQPGKCLSEEVARFYAAEVLLA 115

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLHL   ++RD                                 LK  NILL+  GH 
Sbjct: 116 LEYLHLLGIVYRD---------------------------------LKPENILLHESGHI 142

Query: 121 KLADF------------------------GVAGQLTDTM-----AKRNTVIGTPFWMAPE 151
            L+DF                         V    ++T       + N+ +GT  ++APE
Sbjct: 143 MLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPE 202

Query: 152 VIQEIGYDCVADMWSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPE 210
           VI   G+    D W+LGI   EM  G  P+ G        F    K   +F      +  
Sbjct: 203 VISGDGHGSAVDWWTLGILLYEMLYGTTPFKG--SNRDETFSNILKKEVTFPGSPPVSSS 260

Query: 211 FIDFVSRCLVKNPEER----ATASEMLNHEF 237
             D + + LVK+P +R      A+E+  H F
Sbjct: 261 ARDLIRKLLVKDPSKRLGSKRGAAEIKQHPF 291

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 80.6 bits (199), Expect = 8e-18
 Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 40/236 (16%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL-SEDEIATILCDTLKGLEYLH 65
           P++VK + ++     L++++++   G +    RL K+ + +E+++   L +    L++LH
Sbjct: 58  PFIVKLHYAFQTEGKLYLILDFLRGGDL--FTRLSKEVMFTEEDVKFYLAELALALDHLH 115

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
               I+RD                                 LK  NILL+ EGH KL DF
Sbjct: 116 SLGIIYRD---------------------------------LKPENILLDEEGHIKLTDF 142

Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G++ +  D   K  +  GT  +MAPEV+   G+   AD WS G+   EM  G  P+    
Sbjct: 143 GLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKD 202

Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH 241
               + MI          P   +PE    +     +NP  R   +     E I+RH
Sbjct: 203 RKETMTMILKA---KLGMPQFLSPEAQSLLRALFKRNPANR-LGAGPDGVEEIKRH 254

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 80.8 bits (199), Expect = 9e-18
 Identities = 69/255 (27%), Positives = 104/255 (40%), Gaps = 69/255 (27%)

Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D ++VM + G   +  +M+  K  LSED I  ++   LKGL+Y+H    IHRD      
Sbjct: 93  HDFYLVMPFMGT-DLGKLMKHEK--LSEDRIQFLVYQMLKGLKYIHAAGIIHRD------ 143

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK GN+ +N +   K+ DFG+A Q    M    
Sbjct: 144 ---------------------------LKPGNLAVNEDCELKILDFGLARQTDSEMTG-- 174

Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPY-GDIH--PMRAIFMIPT 195
             + T ++ APEVI   + Y    D+WS+G    EM  GKP + G  H   +  I  +  
Sbjct: 175 -YVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTG 233

Query: 196 KPP-------------------PSFREPDVWT------PEFIDFVSRCLVKNPEERATAS 230
            P                    P FR+ D  +      P  ++ + + LV + E R TA+
Sbjct: 234 TPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAA 293

Query: 231 EMLNHEFIQR-HDTD 244
           E L H + +  HD +
Sbjct: 294 EALAHPYFEEFHDPE 308

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 80.2 bits (198), Expect = 9e-18
 Identities = 69/263 (26%), Positives = 102/263 (38%), Gaps = 66/263 (25%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           ++P+VV  + S+     L +VMEY   G  + +++     L  D       +T+  LEYL
Sbjct: 59  ENPFVVSMFCSFETKRHLCMVMEYVEGGDCATLLK-NIGALPVDMARMYFAETVLALEYL 117

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H    +HRD                                 LK  N+L+ + GH KL D
Sbjct: 118 HNYGIVHRD---------------------------------LKPDNLLITSMGHIKLTD 144

Query: 125 FGVAG----QLTDTMAK----RNT-------VIGTPFWMAPEVIQEIGYDCVADMWSLGI 169
           FG++      LT  + +    ++T       V GTP ++APEVI   GY    D W++GI
Sbjct: 145 FGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGI 204

Query: 170 TALEMAEGKPP-YGDI------HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN 222
              E   G  P +GD         +      P          +    +  D +SR L +N
Sbjct: 205 ILYEFLVGCVPFFGDTPEELFGQVISDDIEWP-------EGDEALPADAQDLISRLLRQN 257

Query: 223 PEER---ATASEMLNHEFIQRHD 242
           P ER     A E+  H F    D
Sbjct: 258 PLERLGTGGAFEVKQHRFFLGLD 280

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 79.9 bits (197), Expect = 1e-17
 Identities = 65/249 (26%), Positives = 98/249 (39%), Gaps = 61/249 (24%)

Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEI----ATILCDTLKG 60
           S ++V    ++    DL +VM     G +   I  + +    E       A I+C    G
Sbjct: 52  SRFIVSLAYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIIC----G 107

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LE+LH RR ++RD                                 LK  N+LL+  G+ 
Sbjct: 108 LEHLHQRRIVYRD---------------------------------LKPENVLLDDHGNV 134

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           +++D G+A +L     K     GTP +MAPEV+Q   YD   D ++LG T  EM  G+ P
Sbjct: 135 RISDLGLAVELKGG-KKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSP 193

Query: 181 YGDIHPM-------RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----AT 228
           +             R    +  + P  F      +PE  D     L K+PE+R      +
Sbjct: 194 FRQRKEKVEKEELKRRTLEMAVEYPDKF------SPEAKDLCEALLQKDPEKRLGCRGGS 247

Query: 229 ASEMLNHEF 237
           A E+  H  
Sbjct: 248 ADEVREHPL 256

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 79.7 bits (197), Expect = 1e-17
 Identities = 59/247 (23%), Positives = 94/247 (38%), Gaps = 65/247 (26%)

Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
           L++V EY    ++ +++      L  D + + +   L+ + Y H    IHRDIK      
Sbjct: 75  LYLVFEYVER-TLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPE---- 129

Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT- 140
                                        NIL++  G  KL DFG A  L    A   T 
Sbjct: 130 -----------------------------NILVSESGVLKLCDFGFARALRARPASPLTD 160

Query: 141 VIGTPFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPY---GDIHPMRAIFMIPTK 196
            + T ++ APE+ + +  Y    D+W++G    E+ +G+P +    DI  +  I      
Sbjct: 161 YVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGP 220

Query: 197 PPPS-------------FREPDVWTPE-------------FIDFVSRCLVKNPEERATAS 230
            PPS                P+   PE              +DF+  CL  +P+ER T  
Sbjct: 221 LPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCD 280

Query: 231 EMLNHEF 237
           E+L H +
Sbjct: 281 ELLQHPY 287

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 80.0 bits (197), Expect = 1e-17
 Identities = 66/242 (27%), Positives = 100/242 (41%), Gaps = 44/242 (18%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEI--ATILCDTLKGL 61
           + P++   Y ++    +L+ VMEY   G +   I    K  L       A I+C    GL
Sbjct: 54  EHPFLTHLYCTFQTKENLFFVMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIIC----GL 109

Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
           ++LH +  ++RD+K          LD                       NILL+T+GH K
Sbjct: 110 QFLHSKGIVYRDLK----------LD-----------------------NILLDTDGHIK 136

Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           +ADFG+  +     AK  T  GTP ++APE++    Y+   D WS G+   EM  G+ P+
Sbjct: 137 IADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPF 196

Query: 182 GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-ATASEMLNHEFIQR 240
                      I    P     P   T E  D + +  V+ PE R     ++  H F + 
Sbjct: 197 HGHDEEELFQSIRMDNP---CYPRWLTREAKDILVKLFVREPERRLGVKGDIRQHPFFRE 253

Query: 241 HD 242
            D
Sbjct: 254 ID 255

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 58/242 (23%), Positives = 90/242 (37%), Gaps = 64/242 (26%)

Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V E+     +  +++ +   L+  +I + +  TL+GLEYLH    +HRD          
Sbjct: 79  LVFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRD---------- 127

Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIG 143
                                  LK  N+L+ ++G  KLADFG+A        K    + 
Sbjct: 128 -----------------------LKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVV 164

Query: 144 TPFWMAPEVIQEIG---YDCVADMWSLGITALEMAEGKPPY---GDIHPMRAIFMI---- 193
           T ++ APE++   G   Y    DMWS+G    E+    P      DI  +  IF      
Sbjct: 165 TRWYRAPELL--FGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTP 222

Query: 194 -PTKPPPSFREPDVWTPEF-----------------IDFVSRCLVKNPEERATASEMLNH 235
                P     PD    +                  +D + R L  NP +R TA + L H
Sbjct: 223 TEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEH 282

Query: 236 EF 237
            +
Sbjct: 283 PY 284

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 79.5 bits (196), Expect = 3e-17
 Identities = 76/301 (25%), Positives = 112/301 (37%), Gaps = 110/301 (36%)

Query: 3   QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL--RKKTLSED----EIATILCD 56
           + D+ +VVK Y S+    +L+ VM+Y   G   D+M L  R     ED     IA + C 
Sbjct: 57  EADNEWVVKLYYSFQDKDNLYFVMDYIPGG---DMMSLLIRLGIFEEDLARFYIAELTC- 112

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
               +E +H    IHRDIK                                   NIL++ 
Sbjct: 113 ---AIESVHKMGFIHRDIKPD---------------------------------NILIDR 136

Query: 117 EGHAKLADFGVAGQL----------------TDTM--------------------AKR-- 138
           +GH KL DFG+                     D+M                     KR  
Sbjct: 137 DGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQH 196

Query: 139 -----NTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHP----MRA 189
                ++++GTP ++APEV+   GY  + D WS+G+   EM  G+PP+    P    ++ 
Sbjct: 197 QRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKV 256

Query: 190 I-----FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER---ATASEMLNHEFIQRH 241
           I       IP++   S         E  D + R L    E+R     A E+  H F +  
Sbjct: 257 INWETTLHIPSQAKLS--------REASDLILR-LCCGAEDRLGKNGADEIKAHPFFKGI 307

Query: 242 D 242
           D
Sbjct: 308 D 308

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score = 78.9 bits (194), Expect = 5e-17
 Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 78/248 (31%)

Query: 3   QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLE 62
           + DS +VVK + S+    +L+++ME+   G +  ++ ++K TL+E+E    + +T+  ++
Sbjct: 57  EADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLL-MKKDTLTEEETQFYIAETVLAID 115

Query: 63  YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKL 122
            +H    IHRDIK                                   N+LL+++GH KL
Sbjct: 116 SIHQLGFIHRDIKPD---------------------------------NLLLDSKGHVKL 142

Query: 123 ADFGVAGQLTDTMA-----------------------------KRN------TVIGTPFW 147
           +DFG+   L                                  KRN      + +GTP +
Sbjct: 143 SDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDY 202

Query: 148 MAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM---------RAIFMIPTKPP 198
           +APEV  + GY+ + D WSLG+   EM  G PP+    P          +   + P + P
Sbjct: 203 IAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNWKETLIFPPEVP 262

Query: 199 PSFREPDV 206
            S +  D+
Sbjct: 263 ISEKAKDL 270

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 78.1 bits (192), Expect = 6e-17
 Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 42/242 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     ++  +  L  VMEY   G +   +  R++  +E+       + +  
Sbjct: 49  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-RERVFTEERARFYGAEIVSA 107

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH R  ++RDIK                                   N++L+ +GH 
Sbjct: 108 LEYLHSRDVVYRDIKLE---------------------------------NLMLDKDGHI 134

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A   T  GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 135 KITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 194

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    R   +I  +     R P   +PE    ++  L K+P++R     + A E++ H
Sbjct: 195 FYNQDHERLFELILME---EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 251

Query: 236 EF 237
            F
Sbjct: 252 RF 253

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 78.3 bits (193), Expect = 7e-17
 Identities = 67/242 (27%), Positives = 101/242 (41%), Gaps = 45/242 (18%)

Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLKGLEYL 64
            P++V    ++     L++++EY   G +   M L R+    ED     L +    LE+L
Sbjct: 59  HPFIVDLIYAFQTGGKLYLILEYLSGGEL--FMHLEREGIFMEDTACFYLSEISLALEHL 116

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H +  I+RD                                 LK  NILL+ +GH KL D
Sbjct: 117 HQQGIIYRD---------------------------------LKPENILLDAQGHVKLTD 143

Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDI 184
           FG+  +        +T  GT  +MAPE++   G+    D WSLG    +M  G PP+   
Sbjct: 144 FGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAE 203

Query: 185 HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNHEFIQ 239
           +  + I  I  K   +   P   TPE  D + + L +NP  R       A+E+ +H F  
Sbjct: 204 NRKKTIDKI-LKGKLNL--PPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFF- 259

Query: 240 RH 241
           RH
Sbjct: 260 RH 261

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 76.7 bits (189), Expect = 9e-17
 Identities = 58/239 (24%), Positives = 93/239 (38%), Gaps = 45/239 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +   P +V+ YG   K   ++IV EY   G + + +R RK  L  + +  +  D  + 
Sbjct: 53  MMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEA 112

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +EYL     IHRD                                 L A N L+  +   
Sbjct: 113 MEYLESNGFIHRD---------------------------------LAARNCLVGEDNVV 139

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG+A  + D     +   GT F   W  PEV     +   +D+WS G+   E+ +E
Sbjct: 140 KVSDFGLARYVLDDQYTSSQ--GTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSE 197

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           GK PY        +  +       +R   P +   E    +  C  + PE+R    ++L
Sbjct: 198 GKMPYERFSNSEVVESVSA----GYRLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLL 252

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 77.8 bits (191), Expect = 1e-16
 Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 43/243 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     S+  +  L  VMEY   G +   +  R++  SED       + +  
Sbjct: 49  LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLS-RERVFSEDRARFYGAEIVSA 107

Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L+YLH  + + +RD                                 LK  N++L+ +GH
Sbjct: 108 LDYLHSEKNVVYRD---------------------------------LKLENLMLDKDGH 134

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            K+ DFG+  +     A   T  GTP ++APEV+++  Y    D W LG+   EM  G+ 
Sbjct: 135 IKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL 194

Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLN 234
           P+ +    +   +I  +     R P   +PE    +S  L K+P++R       A E++ 
Sbjct: 195 PFYNQDHEKLFELILME---EIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQ 251

Query: 235 HEF 237
           H+F
Sbjct: 252 HKF 254

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score = 77.8 bits (191), Expect = 1e-16
 Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 69/214 (32%)

Query: 3   QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLE 62
           + D  +VVK + S+    +L+++ME+   G +  ++ ++K TLSE+     + +T+  ++
Sbjct: 57  EADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLL-MKKDTLSEEATQFYIAETVLAID 115

Query: 63  YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKL 122
            +H    IHRDIK                                   N+LL+ +GH KL
Sbjct: 116 AIHQLGFIHRDIKPD---------------------------------NLLLDAKGHVKL 142

Query: 123 ADFGVAGQLT----------------------DTMAKRN-------------TVIGTPFW 147
           +DFG+   L                       +  +KR              + +GTP +
Sbjct: 143 SDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDY 202

Query: 148 MAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           +APEV  + GY+ + D WSLG+   EM  G PP+
Sbjct: 203 IAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPF 236

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 77.2 bits (190), Expect = 1e-16
 Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 42/242 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     S+  +  L  VMEY   G +   +  R++  SED       + +  
Sbjct: 49  LQNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLS-RERVFSEDRARFYGAEIVSA 107

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH    ++RD                                 LK  N++L+ +GH 
Sbjct: 108 LGYLHSCDVVYRD---------------------------------LKLENLMLDKDGHI 134

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A   T  GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 135 KITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 194

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    +   +I  +     R P   +PE    ++  L K+P++R       A E++ H
Sbjct: 195 FYNQDHEKLFELILME---EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEH 251

Query: 236 EF 237
            F
Sbjct: 252 RF 253

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 76.9 bits (189), Expect = 2e-16
 Identities = 74/250 (29%), Positives = 106/250 (42%), Gaps = 51/250 (20%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK-TLSEDEIATILCDTLKGLEY 63
           +SP++V    S+  ++DL++V +Y   G +     L+K+   SED     + + +  LE+
Sbjct: 54  ESPFIVGLKFSFQTDSDLYLVTDYMSGGEL--FWHLQKEGRFSEDRAKFYIAELVLALEH 111

Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
           LH    ++RD                                 LK  NILL+  GH  L 
Sbjct: 112 LHKYDIVYRD---------------------------------LKPENILLDATGHIALC 138

Query: 124 DFGVA-GQLTDTMAKRNTVIGTPFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPY 181
           DFG++   LTD     NT  GT  ++APEV + E GY    D WSLG+   EM  G  P+
Sbjct: 139 DFGLSKANLTDN-KTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPF 197

Query: 182 --GDIHPM-RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER----ATASEMLN 234
              D   M R I     + P      +V + E   FV   L +NP+ R      A E+  
Sbjct: 198 YAEDTQQMYRNIAFGKVRFP-----KNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKE 252

Query: 235 HEFIQRHDTD 244
           H F    D D
Sbjct: 253 HPFFADIDWD 262

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 59/216 (27%), Positives = 94/216 (43%), Gaps = 40/216 (18%)

Query: 24  IVMEYCGAGSVSDIMRLRKKT---LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           +V++Y  AG +   ++ R KT     E E   +    L  + ++H +  IHRDIK+    
Sbjct: 116 LVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSA--- 172

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR-- 138
                                         NILL + G  KL DFG +     T++    
Sbjct: 173 ------------------------------NILLCSNGLVKLGDFGFSKMYAATVSDDVG 202

Query: 139 NTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP 198
            T  GTP+++APE+ +   Y   ADM+SLG+   E+   K P+ D   M  + M  T   
Sbjct: 203 RTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPF-DGENMEEV-MHKTLAG 260

Query: 199 PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                P   +PE  + V+  L  +P+ R ++S++LN
Sbjct: 261 RYDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLN 296

Length = 496

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 77.4 bits (190), Expect = 3e-16
 Identities = 61/247 (24%), Positives = 103/247 (41%), Gaps = 52/247 (21%)

Query: 4   CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT---LSEDEIATILCDTLKG 60
           CD   +VK++  +  +  L ++MEY   G ++  ++ R K      E E+  +    +  
Sbjct: 122 CDHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLA 181

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+ +H R+ +HRD                                 LK+ NI L   G  
Sbjct: 182 LDEVHSRKMMHRD---------------------------------LKSANIFLMPTGII 208

Query: 121 KLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           KL DFG + Q +D+++    ++  GTP+++APE+ +   Y   ADMWSLG+   E+    
Sbjct: 209 KLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLH 268

Query: 179 PPYGDIHPMRAIFMI------PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+        +  +      P   P S     +  P         L KNP  R T  ++
Sbjct: 269 RPFKGPSQREIMQQVLYGKYDPFPCPVSSGMKALLDP--------LLSKNPALRPTTQQL 320

Query: 233 LNHEFIQ 239
           L+ EF++
Sbjct: 321 LHTEFLK 327

Length = 478

>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase adapter protein beta

 Score = 74.2 bits (182), Expect = 1e-15
 Identities = 65/288 (22%), Positives = 115/288 (39%), Gaps = 89/288 (30%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLKGLEYLH 65
           P ++  +  +   + LW++  +   GS + +++    + +SE  I  IL   L+GL YLH
Sbjct: 59  PNIMTSWTVFTTGSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLH 118

Query: 66  LRRKIHRDIKA------GSGTLVYDRLD--YCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
               IHR+IKA      G G +    L   Y  ++                      N +
Sbjct: 119 QNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVR----------------------NGQ 156

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE--IGYDCVADMWSLGITALEMA 175
               + DF    Q + ++           W++PE++++   GY+  +D++S+GITA E+A
Sbjct: 157 KAKVVYDFP---QFSTSVLP---------WLSPELLRQDLYGYNVKSDIYSVGITACELA 204

Query: 176 EGKPPYGDIH---------------------------PMR---------------AIFMI 193
            G+ P+ D+                             M+               A  M 
Sbjct: 205 TGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMT 264

Query: 194 PTKPPPSFREPD--VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
            T      R P    ++P F + V  CL ++PE+R +AS +L+H F +
Sbjct: 265 QTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFK 312

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buccal mucosa. There are two forms of STRAD, alpha and beta, that complex with LKB1 and MO25. STRAD-beta is also referred to as ALS2CR2 (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 2 protein), since the human gene encoding it is located within the juvenile ALS2 critical region on chromosome 2q33-q34. It is not linked to the development of ALS2. Length = 328

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 74.3 bits (182), Expect = 2e-15
 Identities = 57/236 (24%), Positives = 98/236 (41%), Gaps = 42/236 (17%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P++     S+     L  VMEY   G +   +  R++  SED       + +  L+YLH 
Sbjct: 55  PFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLS-RERVFSEDRTRFYGAEIVSALDYLHS 113

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
            + ++RD                                 LK  N++L+ +GH K+ DFG
Sbjct: 114 GKIVYRD---------------------------------LKLENLMLDKDGHIKITDFG 140

Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHP 186
           +  +     A   T  GTP ++APEV+++  Y    D W LG+   EM  G+ P+ +   
Sbjct: 141 LCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH 200

Query: 187 MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNHEF 237
            +   +I  +     + P   + +    +S  L+K+P +R       A E++ H F
Sbjct: 201 EKLFELILME---DIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSF 253

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 73.4 bits (180), Expect = 2e-15
 Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 45/239 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +   P +V+ YG   + + + +V E+   G +SD +R ++   S++ +  +  D  +G
Sbjct: 53  MMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEG 112

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     IHRD+ A +              C V  NQ+                    
Sbjct: 113 MAYLESSNVIHRDLAARN--------------CLVGENQV-------------------V 139

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG+   + D     +T  GT F   W +PEV     Y   +D+WS G+   E+ +E
Sbjct: 140 KVSDFGMTRFVLDDQYTSST--GTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSE 197

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           GK PY +      +  I       FR  +P + +    + +  C  + PE+R + S +L
Sbjct: 198 GKTPYENRSNSEVVETINA----GFRLYKPRLASQSVYELMQHCWKERPEDRPSFSLLL 252

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 54/249 (21%), Positives = 93/249 (37%), Gaps = 66/249 (26%)

Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
            +++VMEY     +  +M   K+   + E+  ++   L G+ +LH    +HRD       
Sbjct: 80  KIYMVMEYV-EHDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRD------- 131

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  N+LLN  G  K+ DFG+A +    +     
Sbjct: 132 --------------------------LKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQ 165

Query: 141 VIGTPFWMAPEVIQEIG-YDCVADMWSLGITALEMAEGKPPY---GDIHPMRAIF----- 191
           ++ T ++ APE++     Y    DMWS+G    E+   KP +    +I  +  IF     
Sbjct: 166 LVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGT 225

Query: 192 -----------------MIPTKPPPS-----FREPDVWTPEFIDFVSRCLVKNPEERATA 229
                               TK P +     F    + +    D ++R L  +P +R +A
Sbjct: 226 PTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSL-SDNGFDLLNRLLTYDPAKRISA 284

Query: 230 SEMLNHEFI 238
            + L H + 
Sbjct: 285 EDALKHPYF 293

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 73.5 bits (180), Expect = 3e-15
 Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 48/255 (18%)

Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           Q   +P++V  +  +   + L++V+EY   G +   M+ R++ L E+       +    L
Sbjct: 51  QASSNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQ-RQRKLPEEHARFYAAEICIAL 109

Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            +LH R  I+RD                                 LK  N+LL+ +GH K
Sbjct: 110 NFLHERGIIYRD---------------------------------LKLDNVLLDADGHIK 136

Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           L D+G+  +        +T  GTP ++APE+++   Y    D W+LG+   EM  G+ P+
Sbjct: 137 LTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPF 196

Query: 182 G------DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA------ 229
                  D++    +F +  + P   R P   + +    +   L K+P+ER         
Sbjct: 197 DIITDNPDMNTEDYLFQVILEKP--IRIPRFLSVKASHVLKGFLNKDPKERLGCQPQTGF 254

Query: 230 SEMLNHEFIQRHDTD 244
           S++ +H F +  D D
Sbjct: 255 SDIKSHTFFRSIDWD 269

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 72.4 bits (178), Expect = 4e-15
 Identities = 61/253 (24%), Positives = 99/253 (39%), Gaps = 57/253 (22%)

Query: 1   MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL 58
           ++  D   +VKY G   K     L ++MEY  +GS+ D ++  +  ++   +        
Sbjct: 60  LRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQIC 119

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           KG++YL  +R IHRD                                 L A NIL+ +E 
Sbjct: 120 KGMDYLGSQRYIHRD---------------------------------LAARNILVESED 146

Query: 119 HAKLADFGVAGQLTD------TMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITAL 172
             K++DFG+A  L +            + I   FW APE ++   +   +D+WS G+T  
Sbjct: 147 LVKISDFGLAKVLPEDKDYYYVKEPGESPI---FWYAPECLRTSKFSSASDVWSFGVTLY 203

Query: 173 EM-AEGKP---PYGDIHPMRAI---FMIPT------KPPPSFREPDVWTPEFIDFVSRCL 219
           E+   G P   P  +   M  I    MI T      K       P     E  D +  C 
Sbjct: 204 ELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEVYDLMKLCW 263

Query: 220 VKNPEERATASEM 232
              P++R + +++
Sbjct: 264 EAEPQDRPSFADL 276

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 72.2 bits (177), Expect = 6e-15
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 52/187 (27%)

Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDE-----------IATIL 54
           S ++V    ++   TDL +VM     G     +R     + E+             A I+
Sbjct: 52  SRFIVSLAYAFQTKTDLCLVMTIMNGGD----LRYHIYNVDEENPGFPEPRACFYTAQII 107

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
                GLE+LH RR I+RD                                 LK  N+LL
Sbjct: 108 S----GLEHLHQRRIIYRD---------------------------------LKPENVLL 130

Query: 115 NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           + +G+ +++D G+A +L D  +K     GTP +MAPE++Q   YD   D ++LG+T  EM
Sbjct: 131 DNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEM 190

Query: 175 AEGKPPY 181
              + P+
Sbjct: 191 IAARGPF 197

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 72.7 bits (178), Expect = 6e-15
 Identities = 61/235 (25%), Positives = 103/235 (43%), Gaps = 54/235 (22%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P+ V  YGS+   + L++V+E+   G     +R R K    D         +   EYL  
Sbjct: 91  PFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLR-RNKRFPNDVGCFYAAQIVLIFEYLQS 149

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              ++RD                                 LK  N+LL+ +G  K+ DFG
Sbjct: 150 LNIVYRD---------------------------------LKPENLLLDKDGFIKMTDFG 176

Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHP 186
            A ++ DT  +  T+ GTP ++APE++  +G+   AD W+LGI   E+  G PP+    P
Sbjct: 177 FA-KVVDT--RTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEP 233

Query: 187 MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH 241
           +    +I  K      E  ++ P+F+D   + L+K         ++L+H+  +R+
Sbjct: 234 L----LIYQK----ILEGIIYFPKFLDNNCKHLMK---------KLLSHDLTKRY 271

Length = 340

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 72.6 bits (178), Expect = 7e-15
 Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 38/180 (21%)

Query: 4   CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTLKGL 61
            + P++ + Y  +     L+ VME+   G   D+M   +K+    E        +    L
Sbjct: 53  RNHPFLTQLYCCFQTPDRLFFVMEFVNGG---DLMFHIQKSRRFDEARARFYAAEITSAL 109

Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            +LH +  I+RD+K          LD                       N+LL+ EGH K
Sbjct: 110 MFLHDKGIIYRDLK----------LD-----------------------NVLLDHEGHCK 136

Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           LADFG+  +        +T  GTP ++APE++QE+ Y    D W++G+   EM  G  P+
Sbjct: 137 LADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPF 196

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 72.0 bits (177), Expect = 9e-15
 Identities = 61/252 (24%), Positives = 98/252 (38%), Gaps = 70/252 (27%)

Query: 22  LWIVMEYC--GAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           +++VMEYC     S+ D M       SE ++  ++   L+GL+YLH    IHRD      
Sbjct: 83  IFLVMEYCEQDLASLLDNM---PTPFSESQVKCLMLQLLRGLQYLHENFIIHRD------ 133

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+LL  +G  K+ADFG+A           
Sbjct: 134 ---------------------------LKVSNLLLTDKGCLKIADFGLARTYGLPAKPMT 166

Query: 140 TVIGTPFWMAPEVIQEIG---YDCVADMWSLGITALEMAEGKP----------------- 179
             + T ++ APE++  +G   Y    DMW++G    E+   KP                 
Sbjct: 167 PKVVTLWYRAPELL--LGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQL 224

Query: 180 ---PYGDIHP-MRAI-----FMIPTKPPPSFREPDVWTPEF-IDFVSRCLVKNPEERATA 229
              P   I P    +     F +P +P  + +    W  E  +  ++  L+ +P++RATA
Sbjct: 225 LGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATA 284

Query: 230 SEMLNHEFIQRH 241
            E L   + +  
Sbjct: 285 EEALESSYFKEK 296

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 71.6 bits (175), Expect = 1e-14
 Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 34/180 (18%)

Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           Q  + P++V  +  +   + L+ V+EY   G +   M+ R++ L E+       +    L
Sbjct: 51  QASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQ-RQRKLPEEHARFYSAEISLAL 109

Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            YLH R  I+RD                                 LK  N+LL++EGH K
Sbjct: 110 NYLHERGIIYRD---------------------------------LKLDNVLLDSEGHIK 136

Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           L D+G+  +        +T  GTP ++APE+++   Y    D W+LG+   EM  G+ P+
Sbjct: 137 LTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF 196

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 67/268 (25%), Positives = 110/268 (41%), Gaps = 77/268 (28%)

Query: 14  GSYFKNTDLWIVMEYCGAGSVSDIMRL--RKKTLSEDEIATILCDTLKGLEYLHLRRKIH 71
           G+ FK  D+++VM+       SD+  +    + L+E+ I   L   L+GL+Y+H    IH
Sbjct: 77  GADFK--DVYVVMDLME----SDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIH 130

Query: 72  RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL 131
           RD                                 LK  N+L+N +   ++ DFG+A  L
Sbjct: 131 RD---------------------------------LKPSNLLVNEDCELRIGDFGMARGL 157

Query: 132 TDTMAKRNTV----IGTPFWMAPEVIQEIG-YDCVADMWSLGITALEM------------ 174
           + +  +        + T ++ APE++  +  Y    DMWS+G    EM            
Sbjct: 158 SSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNY 217

Query: 175 ---------AEGKPPYGDIHPMRA------IFMIPTKPPPSFRE--PDVWTPEFIDFVSR 217
                      G P    ++ + +      I  +P K P  + +  P   +PE +D +S+
Sbjct: 218 VHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKA-SPEALDLLSQ 276

Query: 218 CLVKNPEERATASEMLNHEFI-QRHDTD 244
            L  +PEER T  + L H F+ Q HD D
Sbjct: 277 MLQFDPEERITVEQALQHPFLAQYHDPD 304

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 36/186 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + I+ EY   GS+   +R      +  ++  +L     G
Sbjct: 59  MGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASG 118

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 119 MKYLSEMNYVHRD---------------------------------LAARNILVNSNLVC 145

Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K++DFG++ +L D+ A   T  G  P  W APE I    +   +D+WS GI   E M+ G
Sbjct: 146 KVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYG 205

Query: 178 KPPYGD 183
           + PY D
Sbjct: 206 ERPYWD 211

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 71.1 bits (174), Expect = 2e-14
 Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 47/186 (25%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RLRKKTLSEDEIAT-----ILCDTL 58
           ++P++   Y ++     L+ VME+   G   D+M  ++ K   +   AT     I+C   
Sbjct: 54  ENPFLTHLYCTFQTKEHLFFVMEFLNGG---DLMFHIQDKGRFDLYRATFYAAEIVC--- 107

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            GL++LH +  I+RD+K          LD                       N++L+ +G
Sbjct: 108 -GLQFLHSKGIIYRDLK----------LD-----------------------NVMLDRDG 133

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           H K+ADFG+  +      + +T  GTP ++APE++Q + Y    D WS G+   EM  G+
Sbjct: 134 HIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQ 193

Query: 179 PPY-GD 183
            P+ GD
Sbjct: 194 SPFHGD 199

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 70.3 bits (172), Expect = 2e-14
 Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 45/239 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +   P +V+ YG   +   L+IV E+   G + + +R R+  LS+D + ++  D  +G
Sbjct: 53  MMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEG 112

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +EYL     IHRD                                 L A N L+++ G  
Sbjct: 113 MEYLERNSFIHRD---------------------------------LAARNCLVSSTGVV 139

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG+   + D     ++  G  F   W  PEV     Y   +D+WS G+   E+  E
Sbjct: 140 KVSDFGMTRYVLDDEYTSSS--GAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTE 197

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           GK P+        + MI       FR   P + +    + +  C  + PE R T +E+L
Sbjct: 198 GKMPFEKKSNYEVVEMISR----GFRLYRPKLASMTVYEVMYSCWHEKPEGRPTFAELL 252

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 70.2 bits (172), Expect = 3e-14
 Identities = 58/228 (25%), Positives = 94/228 (41%), Gaps = 46/228 (20%)

Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           +V   G+      + ++ EYC  G + + +R ++++ L+ +++ +      KG+ +L  +
Sbjct: 101 IVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK 160

Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH-AKLADFG 126
             IHRD                                 L A N+LL T G   K+ DFG
Sbjct: 161 NCIHRD---------------------------------LAARNVLL-THGKIVKICDFG 186

Query: 127 VAGQLTDTMAKRNTVI-GTPF----WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPP 180
           +A    D M   N V+ G       WMAPE I    Y   +D+WS GI   E+ + G  P
Sbjct: 187 LA---RDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNP 243

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
           Y  + P+ + F    K      +P+    E  D +  C   +P +R T
Sbjct: 244 YPGM-PVDSKFYKLIKEGYRMAQPEHAPAEIYDIMKTCWDADPLKRPT 290

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 70.0 bits (171), Expect = 4e-14
 Identities = 67/256 (26%), Positives = 106/256 (41%), Gaps = 47/256 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD-LWIVMEYCGAGSVS-DIMRLRKKTLSEDEIATILCDTL 58
           +   D P  +    S F+  D L+ VMEY   G +   I ++ K    E +      +  
Sbjct: 54  LALQDKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGK--FKEPQAVFYAAEIS 111

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            GL +LH R  I+RD                                 LK  N++L++EG
Sbjct: 112 VGLFFLHRRGIIYRD---------------------------------LKLDNVMLDSEG 138

Query: 119 HAKLADFGVAGQ-LTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           H K+ADFG+  + + D +  R T  GTP ++APE+I    Y    D W+ G+   EM  G
Sbjct: 139 HIKIADFGMCKEHMVDGVTTR-TFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAG 197

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS-----EM 232
           +PP+ D      +F    +   S+  P   + E +      + K+P +R         ++
Sbjct: 198 QPPF-DGEDEDELFQSIMEHNVSY--PKSLSKEAVSICKGLMTKHPSKRLGCGPEGERDI 254

Query: 233 LNHEFIQRHDTDPSQN 248
             H F +R D D  +N
Sbjct: 255 REHAFFRRIDWDKLEN 270

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 69.4 bits (170), Expect = 5e-14
 Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 44/238 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILC-DTLK 59
           M     P +V+  G   +   L+IV EY   GS+ D +R R + +           D  +
Sbjct: 54  MTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCE 113

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+EYL  +  +HRD                                 L A N+L++ +  
Sbjct: 114 GMEYLEEKNFVHRD---------------------------------LAARNVLVSEDLV 140

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AEGK 178
           AK++DFG+A + +         +    W APE ++E  +   +D+WS GI   E+ + G+
Sbjct: 141 AKVSDFGLAKEASQGQDSGKLPVK---WTAPEALREKKFSTKSDVWSFGILLWEIYSFGR 197

Query: 179 PPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
            PY    P   +  +       +R   P+   PE    +  C   +P +R T  ++  
Sbjct: 198 VPY----PRIPLKDVVPHVEKGYRMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLRE 251

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 69.7 bits (171), Expect = 5e-14
 Identities = 58/229 (25%), Positives = 88/229 (38%), Gaps = 76/229 (33%)

Query: 45  LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTL 104
           L E  +   L   L+G+E+ H    IHRDIK                             
Sbjct: 97  LDESRVRKYLFQILRGIEFCHSHNIIHRDIKPE--------------------------- 129

Query: 105 FRLKAGNILLNTEGHAKLADFGVAGQL-------TDTMAKRNTVIGTPFWMAPE-VIQEI 156
                 NIL++  G  KL DFG A  L       TD +A R       ++ APE ++ + 
Sbjct: 130 ------NILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATR-------WYRAPELLVGDT 176

Query: 157 GYDCVADMWSLGITALEMAEGKPPY---GDIHPMRAIFM-----------IPTKPPP--S 200
            Y    D+W++G    EM  G+P +    DI  +  I             I  K P    
Sbjct: 177 KYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAG 236

Query: 201 FREPDV------------WTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
            R P+V             +   +D   +CL  +P++R ++S++L+HEF
Sbjct: 237 MRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHHEF 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 69.7 bits (171), Expect = 5e-14
 Identities = 56/233 (24%), Positives = 87/233 (37%), Gaps = 72/233 (30%)

Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
            L+E +I   +   L+G+ YLH    +HRDIKA                           
Sbjct: 111 KLTESQIKCYMLQLLEGINYLHENHILHRDIKAA-------------------------- 144

Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQLTD---------TMAKRN--TVIGTPFWMAPE- 151
                  NIL++ +G  K+ADFG+A                  R    ++ T ++  PE 
Sbjct: 145 -------NILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPEL 197

Query: 152 VIQEIGYDCVADMWSLGITALEMAEGKPPY---GDIHPMRAIFMI---PTKPP------- 198
           ++ E  Y    D+W +G    EM   +P      DI  +  IF +   PT+         
Sbjct: 198 LLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSL 257

Query: 199 PSFREPDVWT--------------PEFIDFVSRCLVKNPEERATASEMLNHEF 237
           P       +T              PE +D +S+ L  +P +R TAS+ L H +
Sbjct: 258 PGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEHPY 310

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 70.2 bits (172), Expect = 5e-14
 Identities = 64/268 (23%), Positives = 99/268 (36%), Gaps = 84/268 (31%)

Query: 14  GSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           GS  +   ++IV EY       D+   L +  LSE+     +   L+GL+Y+H    +HR
Sbjct: 83  GSLTELNSVYIVQEYMET----DLANVLEQGPLSEEHARLFMYQLLRGLKYIHSANVLHR 138

Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA-KLADFGVA--- 128
           D                                 LK  N+ +NTE    K+ DFG+A   
Sbjct: 139 D---------------------------------LKPANVFINTEDLVLKIGDFGLARIV 165

Query: 129 -------GQLTDTMAKRNTVIGTPFWMAPE-VIQEIGYDCVADMWSLGITALEMAEGKPP 180
                  G L++ +        T ++ +P  ++    Y    DMW+ G    EM  GKP 
Sbjct: 166 DPHYSHKGYLSEGLV-------TKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPL 218

Query: 181 YGDIHPMRAIFMIPTKPP--------------PSFREPDVWTP-------------EFID 213
           +   H +  + +I    P              PSF   D   P             E +D
Sbjct: 219 FAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALD 278

Query: 214 FVSRCLVKNPEERATASEMLNHEFIQRH 241
           F+ + L  NP +R TA E L H ++  +
Sbjct: 279 FLEQILTFNPMDRLTAEEALMHPYMSCY 306

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 70.0 bits (172), Expect = 6e-14
 Identities = 70/264 (26%), Positives = 106/264 (40%), Gaps = 87/264 (32%)

Query: 21  DLWIVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           D++IV E       +D+ +L + + LS D I   L   L+GL+Y+H    +HRD      
Sbjct: 82  DVYIVQELME----TDLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSANVLHRD------ 131

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA----------G 129
                                      LK  N+LLNT    K+ DFG+A          G
Sbjct: 132 ---------------------------LKPSNLLLNTNCDLKICDFGLARIADPEHDHTG 164

Query: 130 QLTDTMAKRNTVIGTPFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKP--------- 179
            LT+ +A R       ++ APE+ +   GY    D+WS+G    EM   +P         
Sbjct: 165 FLTEYVATR-------WYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLH 217

Query: 180 -----------PYGD----IHPMRA---IFMIPTKPPPSFRE--PDVWTPEFIDFVSRCL 219
                      P  +    I  +RA   I  +P KP   + +  P+   P+ +D + + L
Sbjct: 218 QLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNA-DPKALDLLDKML 276

Query: 220 VKNPEERATASEMLNHEFI-QRHD 242
             NP +R T  E L H ++ Q HD
Sbjct: 277 TFNPHKRITVEEALAHPYLEQYHD 300

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 69.4 bits (170), Expect = 8e-14
 Identities = 64/244 (26%), Positives = 101/244 (41%), Gaps = 48/244 (19%)

Query: 7   PYVVKYYGSYFKNTD-LWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTLKGLEY 63
           P++ + + S F+  D L+ VMEY   G   D+M   ++     E        +   GL +
Sbjct: 61  PFLTQLH-SCFQTMDRLYFVMEYVNGG---DLMYHIQQVGKFKEPHAVFYAAEIAIGLFF 116

Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
           LH +  I+RD+K          LD                       N++L+ EGH K+A
Sbjct: 117 LHSKGIIYRDLK----------LD-----------------------NVMLDAEGHIKIA 143

Query: 124 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD 183
           DFG+  +         T  GTP ++APE+I    Y    D W+ G+   EM  G+PP+ D
Sbjct: 144 DFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPF-D 202

Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER----ATAS-EMLNHEFI 238
                 +F    +   S+  P   + E +      L K+P +R     T   ++  H F 
Sbjct: 203 GEDEDELFQSIMEHNVSY--PKSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFF 260

Query: 239 QRHD 242
           +R D
Sbjct: 261 RRID 264

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 69.7 bits (170), Expect = 9e-14
 Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 40/186 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   +SP+VV+ + ++  +  L++VMEY   G + ++M      + E        + +  
Sbjct: 97  MAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMS--NYDVPEKWAKFYTAEVVLA 154

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+ +H    IHRD+K                                   N+LL+  GH 
Sbjct: 155 LDAIHSMGLIHRDVKPD---------------------------------NMLLDKHGHL 181

Query: 121 KLADFGVAGQLTDT-MAKRNTVIGTPFWMAPEVIQEIG----YDCVADMWSLGITALEMA 175
           KLADFG   ++ +T M + +T +GTP +++PEV++  G    Y    D WS+G+   EM 
Sbjct: 182 KLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEML 241

Query: 176 EGKPPY 181
            G  P+
Sbjct: 242 VGDTPF 247

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 69.3 bits (169), Expect = 9e-14
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 36/189 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++    P++V  + S+     L+ V+++   G +   ++ R+++  E        +    
Sbjct: 50  LKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQ-RERSFPEPRARFYAAEIASA 108

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH    ++RD                                 LK  NILL+++GH 
Sbjct: 109 LGYLHSINIVYRD---------------------------------LKPENILLDSQGHV 135

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
            L DFG+  +         T  GTP ++APEVI++  YD   D W LG    EM  G PP
Sbjct: 136 VLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPP 195

Query: 181 Y--GDIHPM 187
           +   D+  M
Sbjct: 196 FYCRDVAEM 204

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 60/244 (24%), Positives = 96/244 (39%), Gaps = 43/244 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +V+  G   K   L +VME    G +   ++ +++ +   ++  +      G
Sbjct: 50  MAQLDHPCIVRLIG-VCKGEPLMLVMELAPLGPLLKYLK-KRREIPVSDLKELAHQVAMG 107

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  +  +HRD                                 L A N+LL     A
Sbjct: 108 MAYLESKHFVHRD---------------------------------LAARNVLLVNRHQA 134

Query: 121 KLADFGVAGQL-TDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG++  L   +   R T  G  P  W APE I    +   +D+WS G+T  E  + 
Sbjct: 135 KISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSY 194

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE 236
           G  PYG++     I M+ +        P+    E    +  C    PE+R T SE+    
Sbjct: 195 GAKPYGEMKGAEVIAMLESG--ERLPRPEECPQEIYSIMLSCWKYRPEDRPTFSEL--ES 250

Query: 237 FIQR 240
             +R
Sbjct: 251 TFRR 254

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 68.5 bits (167), Expect = 2e-13
 Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 34/175 (19%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P++V  + S+     L+ V++Y   G +   ++ R++   E        +    + YLH 
Sbjct: 56  PFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQ-RERCFLEPRARFYAAEVASAIGYLHS 114

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              I+RD                                 LK  NILL+++GH  L DFG
Sbjct: 115 LNIIYRD---------------------------------LKPENILLDSQGHVVLTDFG 141

Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           +  +  +     +T  GTP ++APEV+++  YD   D W LG    EM  G PP+
Sbjct: 142 LCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPF 196

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 67.7 bits (165), Expect = 2e-13
 Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 48/222 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D+PY+V+  G   +   L +VME    G ++  +  +K  ++   +  ++     G
Sbjct: 49  MHQLDNPYIVRMIG-VCEAEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMG 107

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL  +  +HRD                                 L A N+LL  + +A
Sbjct: 108 MKYLEGKNFVHRD---------------------------------LAARNVLLVNQHYA 134

Query: 121 KLADFGVAGQL--TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L   D+  K  +    P  W APE I    +   +D+WS GIT  E  + 
Sbjct: 135 KISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSY 194

Query: 177 GKPPYGDIHPMRAIFMI--------PTKPPPSFRE--PDVWT 208
           G+ PY  +     +  I        P + PP       D W 
Sbjct: 195 GQKPYKKMKGPEVMSFIEQGKRLDCPAECPPEMYALMKDCWI 236

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 59/237 (24%), Positives = 97/237 (40%), Gaps = 56/237 (23%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D  ++   + ++    +L++VM+Y   G +  ++   +  L ED     L + +  ++ +
Sbjct: 59  DRRWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSV 118

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H    +HRDIK                                   N+LL+  GH +LAD
Sbjct: 119 HQLGYVHRDIKPD---------------------------------NVLLDKNGHIRLAD 145

Query: 125 FGVAGQL-TDTMAKRNTVIGTPFWMAPEVIQEIG-----YDCVADMWSLGITALEMAEGK 178
           FG   +L  D   + N  +GTP +++PE++Q +      Y    D WSLG+   EM  G+
Sbjct: 146 FGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGE 205

Query: 179 PP---------YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
            P         YG I   +  F  P          DV + E  D + R L+ +PE R
Sbjct: 206 TPFYAESLVETYGKIMNHKEHFQFPPD------VTDV-SEEAKDLIRR-LICSPETR 254

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 62/246 (25%), Positives = 97/246 (39%), Gaps = 48/246 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCD---- 56
           M   D   +++ YG    +  L +V E    GS+ D  RLRK  L    I + LCD    
Sbjct: 50  MHSLDHENLIRLYGVVLTHP-LMMVTELAPLGSLLD--RLRKDALGHFLI-STLCDYAVQ 105

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
              G+ YL  +R IHRD                                 L A NILL +
Sbjct: 106 IANGMRYLESKRFIHRD---------------------------------LAARNILLAS 132

Query: 117 EGHAKLADFGVAGQL--TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE 173
           +   K+ DFG+   L   +        +  PF W APE ++   +   +D+W  G+T  E
Sbjct: 133 DDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWE 192

Query: 174 M-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
           M   G+ P+  +   + +  I  K       P+    +  + + +C   NP +R T + +
Sbjct: 193 MFTYGEEPWAGLSGSQILKKI-DKEGERLERPEACPQDIYNVMLQCWAHNPADRPTFAAL 251

Query: 233 LNHEFI 238
              EF+
Sbjct: 252 --REFL 255

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 59/249 (23%), Positives = 95/249 (38%), Gaps = 63/249 (25%)

Query: 18  KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG 77
           +   L +V EYC   +V + +    + + E  I  I+  TL+ + + H    IHRD+K  
Sbjct: 71  RKRKLHLVFEYCDH-TVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPE 129

Query: 78  SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK 137
                                            NIL+  +G  KL DFG A  LT     
Sbjct: 130 ---------------------------------NILITKQGQIKLCDFGFARILTGPGDD 156

Query: 138 RNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAEGKPPY--------------- 181
               + T ++ APE++  +  Y    D+W++G    E+  G+P +               
Sbjct: 157 YTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKT 216

Query: 182 -GDIHPM-RAIFMIP------TKPPPSFREP-----DVWTPEFIDFVSRCLVKNPEERAT 228
            GD+ P  + IF         + P P  REP        +   + F+  CL  +P ER +
Sbjct: 217 LGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLS 276

Query: 229 ASEMLNHEF 237
             E+L H +
Sbjct: 277 CEELLEHPY 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 67.8 bits (165), Expect = 4e-13
 Identities = 58/254 (22%), Positives = 105/254 (41%), Gaps = 69/254 (27%)

Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD       
Sbjct: 96  DVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------- 145

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  N+ +N +   K+ DFG+A    D M     
Sbjct: 146 --------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG--- 176

Query: 141 VIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPTK 196
            + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +   
Sbjct: 177 YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGT 236

Query: 197 PPPSFRE----------------------PDVW---TPEFIDFVSRCLVKNPEERATASE 231
           P     +                       +V+    P  +D + + LV + ++R TA++
Sbjct: 237 PGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQ 296

Query: 232 MLNHE-FIQRHDTD 244
            L H  F Q HD D
Sbjct: 297 ALAHAYFAQYHDPD 310

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 70/270 (25%), Positives = 107/270 (39%), Gaps = 85/270 (31%)

Query: 24  IVMEYCGAGSVSDIMRL--RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
           +VM+       SD+ ++  RK  L+E ++  IL   L GL  LH    +HRD        
Sbjct: 97  LVMDIMA----SDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKWYFMHRD-------- 144

Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA-----GQLTDTMA 136
                                    L   NI +N++G  K+ADFG+A        +DT++
Sbjct: 145 -------------------------LSPANIFINSKGICKIADFGLARRYGYPPYSDTLS 179

Query: 137 KRNTV---------IGTPFWMAPEVIQEIGYDC---VADMWSLGITALEMAEGKPPY--- 181
           K  T+         + T ++ APE++  +G +      DMWS+G    E+  GKP +   
Sbjct: 180 KDETMQRREEMTSKVVTLWYRAPELL--MGAEKYHFAVDMWSVGCIFAELLTGKPLFPGE 237

Query: 182 GDIHPMRAIFMI---------------PTKPPPSFREPDVWTPEF-------IDFVSRCL 219
            +I  +  IF +               P     + R+P      F       ID +   L
Sbjct: 238 NEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLL 297

Query: 220 VKNPEERATASEMLNHEFIQRHDT--DPSQ 247
             NP ER +A E L HE+ +      DPSQ
Sbjct: 298 KLNPLERISAKEALKHEYFKSDPLPCDPSQ 327

Length = 335

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 67.3 bits (164), Expect = 4e-13
 Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 34/181 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++    P++V  + S+     L+ V++Y   G +   ++ R++   E        +    
Sbjct: 50  LKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQ-RERCFLEPRARFYAAEIASA 108

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH    ++RD                                 LK  NILL+++GH 
Sbjct: 109 LGYLHSLNIVYRD---------------------------------LKPENILLDSQGHI 135

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
            L DFG+  +  +     +T  GTP ++APEV+ +  YD   D W LG    EM  G PP
Sbjct: 136 VLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPP 195

Query: 181 Y 181
           +
Sbjct: 196 F 196

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 67.2 bits (164), Expect = 5e-13
 Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 35/183 (19%)

Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
              + P++V  +  +   + L+ V+E+   G +   M+ R++ L E+       +    L
Sbjct: 51  TASNHPFLVGLHSCFQTESRLFFVIEFVSGGDLMFHMQ-RQRKLPEEHARFYSAEISLAL 109

Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            +LH R  I+RD+K          LD                       N+LL+ EGH K
Sbjct: 110 NFLHERGIIYRDLK----------LD-----------------------NVLLDAEGHIK 136

Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           L D+G+  +        +T  GTP ++APE+++   Y    D W+LG+   EM  G+ P+
Sbjct: 137 LTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF 196

Query: 182 GDI 184
            DI
Sbjct: 197 -DI 198

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 67.1 bits (164), Expect = 6e-13
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 40/186 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   +S ++V+ + ++  +  L++VMEY   G + ++M      + E        + +  
Sbjct: 97  MAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMS--NYDIPEKWARFYTAEVVLA 154

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+ +H    IHRD+K                                   N+LL+  GH 
Sbjct: 155 LDAIHSMGFIHRDVKPD---------------------------------NMLLDKSGHL 181

Query: 121 KLADFGVAGQL-TDTMAKRNTVIGTPFWMAPEVIQEIGYDCV----ADMWSLGITALEMA 175
           KLADFG   ++  + M + +T +GTP +++PEV++  G D       D WS+G+   EM 
Sbjct: 182 KLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML 241

Query: 176 EGKPPY 181
            G  P+
Sbjct: 242 VGDTPF 247

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 66.7 bits (163), Expect = 7e-13
 Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 36/176 (20%)

Query: 7   PYVVKYYGSYFKNTD-LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P++V  + S F+  D L+ V++Y   G +   ++ R+++  E        +    L YLH
Sbjct: 56  PFLVGLHYS-FQTADKLYFVLDYVNGGELFFHLQ-RERSFPEPRARFYAAEIASALGYLH 113

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
               I+RD                                 LK  NILL+++GH  L DF
Sbjct: 114 SLNIIYRD---------------------------------LKPENILLDSQGHVVLTDF 140

Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           G+  +  +     +T  GTP ++APEV+++  YD   D W LG    EM  G PP+
Sbjct: 141 GLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPF 196

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 66.1 bits (161), Expect = 7e-13
 Identities = 57/230 (24%), Positives = 93/230 (40%), Gaps = 41/230 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQ D+PY+V+  G   +     +VME    G ++  ++ + K ++E  I  ++     G
Sbjct: 50  MQQLDNPYIVRMIG-ICEAESWMLVMELAELGPLNKFLQ-KNKHVTEKNITELVHQVSMG 107

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A N+LL T+ +A
Sbjct: 108 MKYLEETNFVHRD---------------------------------LAARNVLLVTQHYA 134

Query: 121 KLADFGVAGQLT--DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L   +   K  T    P  W APE +    +   +D+WS G+   E  + 
Sbjct: 135 KISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSY 194

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
           G+ PY  +       MI +        P    PE  D +  C     +ER
Sbjct: 195 GQKPYKGMKGNEVTQMIESG--ERMECPQRCPPEMYDLMKLCWTYGVDER 242

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 67.5 bits (164), Expect = 9e-13
 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 33/196 (16%)

Query: 1   MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVS-DIMRLRKK--TLSEDEIATILC 55
           M++     +V+Y   +    N  L+I+ME+C AG +S +I +  K    + E  I  I  
Sbjct: 66  MRELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITR 125

Query: 56  DTLKGLEYLHL-------RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLK 108
             L  L Y H         R +HRD+K                  N+  +   + + ++ 
Sbjct: 126 QLLHALAYCHNLKDGPNGERVLHRDLKPQ----------------NIFLSTGIRHIGKIT 169

Query: 109 AGNILLNTEGHAKLADFGVAGQL-TDTMAKRNTVIGTPFWMAPEVI--QEIGYDCVADMW 165
           A    LN    AK+ DFG++  +  ++MA  ++ +GTP++ +PE++  +   YD  +DMW
Sbjct: 170 AQANNLNGRPIAKIGDFGLSKNIGIESMA--HSCVGTPYYWSPELLLHETKSYDDKSDMW 227

Query: 166 SLGITALEMAEGKPPY 181
           +LG    E+  GK P+
Sbjct: 228 ALGCIIYELCSGKTPF 243

Length = 1021

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 66.2 bits (161), Expect = 1e-12
 Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 52/209 (24%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D+ ++   + ++    +L++VM+Y   G +  ++   +  L ED     L + +  ++ +
Sbjct: 59  DNQWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSV 118

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H    +HRDIK                                   NIL++  GH +LAD
Sbjct: 119 HQLHYVHRDIKPD---------------------------------NILMDMNGHIRLAD 145

Query: 125 FGVAGQLT-DTMAKRNTVIGTPFWMAPEVIQEI-------GYDCVADMWSLGITALEMAE 176
           FG   +L  D   + +  +GTP +++PE++Q +       G +C  D WSLG+   EM  
Sbjct: 146 FGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPEC--DWWSLGVCMYEMLY 203

Query: 177 GKPP---------YGDIHPMRAIFMIPTK 196
           G+ P         YG I   +  F  P +
Sbjct: 204 GETPFYAESLVETYGKIMNHKERFQFPAQ 232

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 68/250 (27%), Positives = 99/250 (39%), Gaps = 73/250 (29%)

Query: 23  WIVMEYCGAGSVSDIMRLRKKTL---SEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           ++V EY       D+M L +  L   SED I + +   L+GL Y H +  +HRDIK    
Sbjct: 92  YLVFEYMD----HDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIK---- 143

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR- 138
                    CS                    NILLN +G  KLADFG+A +L ++   R 
Sbjct: 144 ---------CS--------------------NILLNNKGQIKLADFGLA-RLYNSEESRP 173

Query: 139 --NTVIGTPFWMAPE-VIQEIGYDCVADMWSLGITALEMAEGKP---------------- 179
             N VI T ++  PE ++ E  Y    D+WS G    E+   KP                
Sbjct: 174 YTNKVI-TLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISR 232

Query: 180 ----PYGDIHP--MRAIFMIPTKPPPSFR-----EPDVWTPEFIDFVSRCLVKNPEERAT 228
               P   + P  ++  +    KP   +R     E        +D +   L  +P +R T
Sbjct: 233 LCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCT 292

Query: 229 ASEMLNHEFI 238
           A E LN  ++
Sbjct: 293 AEEALNSPWL 302

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 66.2 bits (161), Expect = 1e-12
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 40/186 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   +SP+VV+ + ++  +  L++VMEY   G + ++M      + E        + +  
Sbjct: 97  MAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS--NYDVPEKWARFYTAEVVLA 154

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+ +H    IHRD+K                                   N+LL+  GH 
Sbjct: 155 LDAIHSMGFIHRDVKPD---------------------------------NMLLDKSGHL 181

Query: 121 KLADFGVAGQLT-DTMAKRNTVIGTPFWMAPEVIQEIG----YDCVADMWSLGITALEMA 175
           KLADFG   ++  + M + +T +GTP +++PEV++  G    Y    D WS+G+   EM 
Sbjct: 182 KLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML 241

Query: 176 EGKPPY 181
            G  P+
Sbjct: 242 VGDTPF 247

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 65.0 bits (158), Expect = 2e-12
 Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 58/218 (26%)

Query: 45  LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTL 104
           L  + I  ++   L+GL++LH    +HRD                               
Sbjct: 105 LPAETIKDLMRQFLRGLDFLHANCIVHRD------------------------------- 133

Query: 105 FRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM 164
             LK  NIL+ + G  KLADFG+A   +  MA    V+ T ++ APEV+ +  Y    DM
Sbjct: 134 --LKPENILVTSGGQVKLADFGLARIYSCQMALTPVVV-TLWYRAPEVLLQSTYATPVDM 190

Query: 165 WSLGITALEMAEGKPPY-GD-----IHPMRAIFMIPTK--------------PPPSFREP 204
           WS+G    EM   KP + G+     +  +  +  +P +               P   R  
Sbjct: 191 WSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPV 250

Query: 205 DVWTPEFIDFVSRCLVK----NPEERATASEMLNHEFI 238
               PE  +  ++ L++    NP +R +A   L H F 
Sbjct: 251 QSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQHPFF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 65.3 bits (159), Expect = 2e-12
 Identities = 61/255 (23%), Positives = 97/255 (38%), Gaps = 72/255 (28%)

Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D ++VM Y      +D+ ++    LSED++  ++   L GL+Y+H    IHRD       
Sbjct: 94  DFYLVMPYM----QTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRD------- 142

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK GN+ +N +   K+ DFG+A      M     
Sbjct: 143 --------------------------LKPGNLAVNEDCELKILDFGLARHADAEMTG--- 173

Query: 141 VIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPY------------------ 181
            + T ++ APEVI   + Y+   D+WS+G    EM  GK  +                  
Sbjct: 174 YVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGV 233

Query: 182 ---------GDIHPMRAIFMIPTKPPPSFRE--PDVWTPEFIDFVSRCLVKNPEERATAS 230
                     D      I  +P  P   F    P   +P+ +D + + L  + ++R TA+
Sbjct: 234 PGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKA-SPQAVDLLEKMLELDVDKRLTAT 292

Query: 231 EMLNHEFI-QRHDTD 244
           E L H +     D D
Sbjct: 293 EALEHPYFDSFRDAD 307

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 51/188 (27%), Positives = 73/188 (38%), Gaps = 39/188 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D P+VV+  G    +  + ++ +    G + D +R  K  +    +        KG
Sbjct: 63  MASVDHPHVVRLLGICLSSQ-VQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKG 121

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  +R +HRD                                 L A N+L+ T  H 
Sbjct: 122 MSYLEEKRLVHRD---------------------------------LAARNVLVKTPQHV 148

Query: 121 KLADFGVAGQLTDTMAKRNTVIG--TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K+ DFG+A +L D   K     G   P  WMA E I    Y   +D+WS G+T  E M  
Sbjct: 149 KITDFGLA-KLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTF 207

Query: 177 GKPPYGDI 184
           G  PY  I
Sbjct: 208 GAKPYEGI 215

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 65.0 bits (158), Expect = 3e-12
 Identities = 72/300 (24%), Positives = 116/300 (38%), Gaps = 100/300 (33%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDI---MRLRKKTLSEDEIATILCDT 57
           + + D+ +VV+ Y S+    +L+ VM+Y   G +  +   M +  + L+   IA + C  
Sbjct: 55  LAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLIRMGIFPEDLARFYIAELTC-- 112

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
              +E +H    IHRDIK                                   NIL++ +
Sbjct: 113 --AVESVHKMGFIHRDIKPD---------------------------------NILIDRD 137

Query: 118 GHAKLADFGVAGQL----------------TDTM------------------------AK 137
           GH KL DFG+                     D+M                        A 
Sbjct: 138 GHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAA 197

Query: 138 R-------NTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHP---- 186
           R       ++++GTP ++APEV+   GY  + D WS+G+   EM  G+PP+    P    
Sbjct: 198 RQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQ 257

Query: 187 MRAI-FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA---TASEMLNHEFIQRHD 242
           M+ I +      PP  +     +PE  D + + L + PE+R     A E+  H F +  D
Sbjct: 258 MKVINWQTSLHIPPQAK----LSPEASDLIIK-LCRGPEDRLGKNGADEIKAHPFFKTID 312

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 64.9 bits (158), Expect = 4e-12
 Identities = 73/299 (24%), Positives = 111/299 (37%), Gaps = 102/299 (34%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           DSP+VV  Y S+     L+++ME+   G +   M ++  T SED     + + +  +E +
Sbjct: 59  DSPWVVSLYYSFQDAQYLYLIMEFLPGGDLM-TMLIKYDTFSEDVTRFYMAECVLAIEAV 117

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H    IHRDI                                 K  NIL++  GH KL+D
Sbjct: 118 HKLGFIHRDI---------------------------------KPDNILIDRGGHIKLSD 144

Query: 125 FGVA-----------------------------GQLTD----TMAKRNTV---------- 141
           FG++                                 D    TM+ ++ +          
Sbjct: 145 FGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLM 204

Query: 142 ----IGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHP---MRAIFMIP 194
               +GTP ++APE+  + GY    D WSLG    E   G PP+   +     R I    
Sbjct: 205 AYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHETYRKII--- 261

Query: 195 TKPPPSFRE----PD--VWTPEFIDFVSRCLVKNPEE---RATASEMLNHEFIQRHDTD 244
                ++RE    PD    + E  D + R L+ N E    R  A E+ +H F +  D D
Sbjct: 262 -----NWRETLYFPDDIHLSVEAEDLIRR-LITNAENRLGRGGAHEIKSHPFFRGVDWD 314

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 64.0 bits (156), Expect = 5e-12
 Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 44/179 (24%)

Query: 3   QCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           Q D   +VKY G  +     +L +VMEY   GS+ D ++  ++ L   ++        KG
Sbjct: 63  QHD--NIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKG 120

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +EYL  +R +HRD                                 L   NIL+ +E   
Sbjct: 121 MEYLGSKRYVHRD---------------------------------LATRNILVESENRV 147

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           K+ DFG+   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 148 KIGDFGLTKVLP--QDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 204

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 63.9 bits (155), Expect = 7e-12
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 43/185 (23%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D  ++   + ++     L++VM+Y   G +  ++   +  L ED     + + +  +  +
Sbjct: 59  DCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSI 118

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H    +HRDIK                                   N+LL+  GH +LAD
Sbjct: 119 HQLHYVHRDIKPD---------------------------------NVLLDMNGHIRLAD 145

Query: 125 FGVAGQLTDTMAKRNTV-IGTPFWMAPEVIQEI-------GYDCVADMWSLGITALEMAE 176
           FG   ++      +++V +GTP +++PE++Q +       G +C  D WSLG+   EM  
Sbjct: 146 FGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPEC--DWWSLGVCMYEMLY 203

Query: 177 GKPPY 181
           G+ P+
Sbjct: 204 GETPF 208

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 63.2 bits (154), Expect = 7e-12
 Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 42/236 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WIVME    G +   +++ K +L    +          
Sbjct: 61  MRQFDHPHIVKLIGVITENP-VWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTA 119

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRDI                                  A N+L+++    
Sbjct: 120 LAYLESKRFVHRDI---------------------------------AARNVLVSSPDCV 146

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  L D    + +    P  WMAPE I    +   +D+W  G+   E +  G 
Sbjct: 147 KLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGV 206

Query: 179 PPYGDIHPMRAIFMIP--TKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+  +     I  I    + P     P    P     +++C   +P +R   +E+
Sbjct: 207 KPFQGVKNNDVIGRIENGERLP----MPPNCPPTLYSLMTKCWAYDPSKRPRFTEL 258

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 63.5 bits (154), Expect = 8e-12
 Identities = 58/244 (23%), Positives = 98/244 (40%), Gaps = 58/244 (23%)

Query: 18  KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG 77
           + T L +V E+      + + ++ +  +  + I  ++   L+GL++LH  R +HRD    
Sbjct: 80  RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRD---- 135

Query: 78  SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK 137
                                        LK  NIL+ + G  KLADFG+A ++      
Sbjct: 136 -----------------------------LKPQNILVTSSGQIKLADFGLA-RIYSFQMA 165

Query: 138 RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY---GDIHPMRAIFMIP 194
             +V+ T ++ APEV+ +  Y    D+WS+G    EM   KP +    D+  +  I  + 
Sbjct: 166 LTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVI 225

Query: 195 TKPPPSFREPDVWTPE-------------FI--------DFVSRCLVKNPEERATASEML 233
             P       DV  P              F+        D + +CL  NP +R +A   L
Sbjct: 226 GLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSAL 285

Query: 234 NHEF 237
           +H +
Sbjct: 286 SHPY 289

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 63.1 bits (153), Expect = 8e-12
 Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 42/214 (19%)

Query: 18  KNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLRRKIHRDIKA 76
           +   L+IV EY   GS+ D +R R ++ L  D +     D  + +EYL     +HRD   
Sbjct: 71  EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRD--- 127

Query: 77  GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA 136
                                         L A N+L++ +  AK++DFG+  + + T  
Sbjct: 128 ------------------------------LAARNVLVSEDNVAKVSDFGLTKEASST-- 155

Query: 137 KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIP- 194
            ++T      W APE ++E  +   +D+WS GI   E+   G+ PY  I P++ +  +P 
Sbjct: 156 -QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI-PLKDV--VPR 211

Query: 195 TKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
            +       PD   P   D + +C   +   R +
Sbjct: 212 VEKGYKMDAPDGCPPVVYDVMKQCWHLDAATRPS 245

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 63.1 bits (153), Expect = 9e-12
 Identities = 58/260 (22%), Positives = 108/260 (41%), Gaps = 65/260 (25%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT---------------- 44
           ++Q + P+V+K YG+  ++  L +++EY   GS+   +R  +K                 
Sbjct: 57  LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYL 116

Query: 45  LSEDEIATILCDTL-------KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVIT 97
            + DE A  + D +       +G++YL   + +HRD                        
Sbjct: 117 DNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRD------------------------ 152

Query: 98  NQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL--TDTMAKRNTVIGTPFWMAPEVIQE 155
                    L A N+L+      K++DFG++  +   D+  KR+       WMA E + +
Sbjct: 153 ---------LAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFD 203

Query: 156 IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFI 212
             Y   +D+WS G+   E+   G  PY  I P R   ++ T     +R   P+  + E  
Sbjct: 204 HIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKT----GYRMERPENCSEEMY 259

Query: 213 DFVSRCLVKNPEERATASEM 232
           + +  C  + P++R T +++
Sbjct: 260 NLMLTCWKQEPDKRPTFADI 279

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 63.5 bits (154), Expect = 1e-11
 Identities = 57/199 (28%), Positives = 80/199 (40%), Gaps = 37/199 (18%)

Query: 40  LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQ 99
           L KK L+ +++        KG+E+L  R+ IHRD                          
Sbjct: 171 LYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRD-------------------------- 204

Query: 100 IYKTLFRLKAGNILLNTEGHAKLADFGVAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIG 157
                  L A NILL+     K+ DFG+A  +  D    R      P  WMAPE I +  
Sbjct: 205 -------LAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV 257

Query: 158 YDCVADMWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVS 216
           Y   +D+WS G+   E+ + G  PY  +  +   F    K     R PD  TPE    + 
Sbjct: 258 YTIQSDVWSFGVLLWEIFSLGASPYPGVK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTML 316

Query: 217 RCLVKNPEERATASEMLNH 235
            C    P +R T SE++ H
Sbjct: 317 DCWHGEPSQRPTFSELVEH 335

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 63.1 bits (153), Expect = 1e-11
 Identities = 61/258 (23%), Positives = 107/258 (41%), Gaps = 75/258 (29%)

Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            ++++V    GA  +++I++ +K  LS++ +  ++   L+GL+Y+H    IHRD      
Sbjct: 93  NEVYLVTNLMGA-DLNNIVKCQK--LSDEHVQFLIYQLLRGLKYIHSAGIIHRD------ 143

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   ++ DFG+A Q  D M    
Sbjct: 144 ---------------------------LKPSNVAVNEDCELRILDFGLARQADDEMTG-- 174

Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+ +GK   P    I  ++ I  +  
Sbjct: 175 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVG 233

Query: 196 KPPPS----------------------------FREPDVWTPEFIDFVSRCLVKNPEERA 227
            P P                             FR  +   P  ID + + LV + ++R 
Sbjct: 234 TPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGAN---PLAIDLLEKMLVLDSDKRI 290

Query: 228 TASEMLNHE-FIQRHDTD 244
           +ASE L H  F Q HD +
Sbjct: 291 SASEALAHPYFSQYHDPE 308

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score = 63.5 bits (154), Expect = 1e-11
 Identities = 64/296 (21%), Positives = 109/296 (36%), Gaps = 92/296 (31%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + + D+ +VVK Y S+    +L+ VM+Y   G +  ++ +R +   E      + +    
Sbjct: 55  LAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLL-IRMEVFPEVLARFYIAELTLA 113

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +E +H    IHRDIK                                   NIL++ +GH 
Sbjct: 114 IESVHKMGFIHRDIKPD---------------------------------NILIDLDGHI 140

Query: 121 KLADFGVA-------------------------------------GQLTDTMAKR----- 138
           KL DFG+                                      G    T+ +R     
Sbjct: 141 KLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQH 200

Query: 139 -----NTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI 193
                ++++GTP ++APEV+   GY  + D WS+G+   EM  G+PP+    P      +
Sbjct: 201 QRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKV 260

Query: 194 -----PTKPPPSFREPDVWTPEFIDFVSR--CLVKNPEERATASEMLNHEFIQRHD 242
                    PP  +     +PE +D +++  C  +    R  A ++  H F    D
Sbjct: 261 INWENTLHIPPQVK----LSPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSEVD 312

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 39/185 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +     +V+ YG   K   ++IV EY   G + + +R   K     ++  +  D  +G
Sbjct: 53  MMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEG 112

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  ++ IHRD                                 L A N L++ +G  
Sbjct: 113 MAYLESKQFIHRD---------------------------------LAARNCLVDDQGCV 139

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG++  + D   +  + +G+ F   W  PEV+    +   +D+W+ G+   E+ + 
Sbjct: 140 KVSDFGLSRYVLDD--EYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSL 197

Query: 177 GKPPY 181
           GK PY
Sbjct: 198 GKMPY 202

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 62.7 bits (152), Expect = 1e-11
 Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 52/249 (20%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D P++V    ++     L  +++    G +   +  +    SE E+     + + GLE++
Sbjct: 55  DCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHLS-QHGVFSEKEMRFYATEIILGLEHM 113

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H R  ++RD                                 LK  NILL+  GH +++D
Sbjct: 114 HNRFVVYRD---------------------------------LKPANILLDEHGHVRISD 140

Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPY-- 181
            G+A   +    K +  +GT  +MAPEV+Q+   YD  AD +SLG    ++  G  P+  
Sbjct: 141 LGLACDFSKK--KPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQ 198

Query: 182 ---GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEML 233
               D H +  + +       +   PD ++PE    +   L ++  +R       A E+ 
Sbjct: 199 HKTKDKHEIDRMTLT-----VNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVK 253

Query: 234 NHEFIQRHD 242
            H F +  D
Sbjct: 254 EHVFFKGID 262

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 57/255 (22%), Positives = 94/255 (36%), Gaps = 65/255 (25%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEI---------- 50
           M++ +  +VV+  G         +VME    G +   +R R+    E E           
Sbjct: 63  MKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRR---PEAENNPGLGPPTLQ 119

Query: 51  -----ATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLF 105
                A  + D   G+ YL  ++ +HRD                                
Sbjct: 120 KFIQMAAEIAD---GMAYLAAKKFVHRD-------------------------------- 144

Query: 106 RLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVAD 163
            L A N ++  +   K+ DFG+   + +T   R    G  P  WMAPE +++  +   +D
Sbjct: 145 -LAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSD 203

Query: 164 MWSLGITALEMAE-GKPPY-GDIHPMRAIFMIPTK--PPPSFREPDVWTPEFIDFVSRCL 219
           +WS G+   EMA   + PY G  +     F+I       P    PD       + +  C 
Sbjct: 204 VWSFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGGHLDLPE-NCPDKLL----ELMRMCW 258

Query: 220 VKNPEERATASEMLN 234
             NP+ R T  E+++
Sbjct: 259 QYNPKMRPTFLEIVS 273

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 59/236 (25%), Positives = 88/236 (37%), Gaps = 65/236 (27%)

Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TLS+D     L   L+GL+Y+H    +HRD                             
Sbjct: 103 QTLSDDHCQYFLYQLLRGLKYIHSANVLHRD----------------------------- 133

Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCV 161
               LK  N+LLN     K+ DFG+A   ++        + T ++ APE++     Y   
Sbjct: 134 ----LKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTA 189

Query: 162 ADMWSLGITALEMAEGKP--PYGD-IHPMRAIFMI------------------------P 194
            D+WS+G    E+   KP  P  D +H ++ I  +                        P
Sbjct: 190 IDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLP 249

Query: 195 TKPPPSFRE--PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQN 248
             P  SF    P    P  ID + + LV +P +R T  E L H ++     DPS  
Sbjct: 250 YTPRQSFARLFPHA-NPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLH-DPSDE 303

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 35/182 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEIATILCDTLK 59
           +++ +S +VV    +Y     L +V+     G +   I  +      E+       +   
Sbjct: 54  LEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITC 113

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GLE LH  R ++RD                                 LK  NILL+  GH
Sbjct: 114 GLEDLHRERIVYRD---------------------------------LKPENILLDDYGH 140

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            +++D G+A ++ +    R  V GT  +MAPEV++   Y    D W LG    EM EGK 
Sbjct: 141 IRISDLGLAVEIPEGETIRGRV-GTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKS 199

Query: 180 PY 181
           P+
Sbjct: 200 PF 201

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 69/259 (26%), Positives = 104/259 (40%), Gaps = 75/259 (28%)

Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDE-IATILCDTLKGLEYLHLRRKIHRDIKAGS 78
            D++ V E  G    +D+ RL      E + I   L   L+GL+Y+H    +HRD     
Sbjct: 83  EDIYFVTELLG----TDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRD----- 133

Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR 138
                                       LK  NIL+N     K+ DFG+A      M   
Sbjct: 134 ----------------------------LKPSNILINENCDLKICDFGLARIQDPQMTG- 164

Query: 139 NTVIGTPFWMAPEVI---QEIGYDCVADMWSLGITALEMAEGKPPY-GDIH--------- 185
              + T ++ APE++   Q+  YD   D+WS G    EM EGKP + G  H         
Sbjct: 165 --YVSTRYYRAPEIMLTWQK--YDVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITD 220

Query: 186 -----PMRAIFMIPTKPPPSF------REPDVWT-------PEFIDFVSRCLVKNPEERA 227
                P   I  I ++    F      REP  ++       P  ID + + LV +P++R 
Sbjct: 221 LLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRI 280

Query: 228 TASEMLNHEFIQRHDTDPS 246
           +A+E L H ++  +  DP+
Sbjct: 281 SAAEALAHPYLAPYH-DPT 298

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 51/209 (24%), Positives = 81/209 (38%), Gaps = 64/209 (30%)

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           L+G+ Y H  R +HRD                                 LK  N+L++ E
Sbjct: 109 LQGIAYCHSHRVLHRD---------------------------------LKPQNLLIDRE 135

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG---YDCVADMWSLGITALEM 174
           G  KLADFG+A      +      + T ++ APE++  +G   Y    D+WS+G    EM
Sbjct: 136 GALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEIL--LGSRQYSTPVDIWSIGCIFAEM 193

Query: 175 AEGKPPY-GD--IHPMRAIFMIPTKP-----P-----PSFR------EPDVWT------- 208
              +P + GD  I  +  IF     P     P     P ++           +       
Sbjct: 194 VNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLD 253

Query: 209 PEFIDFVSRCLVKNPEERATASEMLNHEF 237
            + +D +S+ LV +P +R +A   L H +
Sbjct: 254 EDGLDLLSKMLVYDPAKRISAKAALQHPY 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 61.2 bits (148), Expect = 4e-11
 Identities = 57/236 (24%), Positives = 88/236 (37%), Gaps = 41/236 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q D P +VK  G   +   ++IVME    G     +R +K  L   ++     D   G
Sbjct: 46  LKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAG 105

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  +  IHRD                                 L A N L+      
Sbjct: 106 MAYLESKNCIHRD---------------------------------LAARNCLVGENNVL 132

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           K++DFG++ Q  D +   + +   P  W APE +    Y   +D+WS GI   E  + G 
Sbjct: 133 KISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGV 192

Query: 179 PPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            PY  +   +A   +       +R   P     +    + RC    PE R   SE+
Sbjct: 193 CPYPGMTNQQAREQVEK----GYRMSCPQKCPDDVYKVMQRCWDYKPENRPKFSEL 244

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 60.6 bits (147), Expect = 5e-11
 Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 59/241 (24%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLK 59
           M+Q   P +V+ Y    +   ++I+ EY   GS+ D ++  +   L+ +++  +     +
Sbjct: 55  MKQLQHPRLVRLYAVVTQEP-IYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAE 113

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  +  IHRD                                 L+A NIL++    
Sbjct: 114 GMAFIERKNYIHRD---------------------------------LRAANILVSETLC 140

Query: 120 AKLADFGVAGQLTDT--MAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM 174
            K+ADFG+A  + D    A+     G  F   W APE I    +   +D+WS GI   E+
Sbjct: 141 CKIADFGLARLIEDNEYTARE----GAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEI 196

Query: 175 AE-GKPPY-GDIHP-----MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA 227
              G+ PY G  +P     +   + +P         PD    E  + +  C  + PEER 
Sbjct: 197 VTYGRIPYPGMTNPEVIQNLERGYRMP--------RPDNCPEELYELMRLCWKEKPEERP 248

Query: 228 T 228
           T
Sbjct: 249 T 249

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 60.8 bits (147), Expect = 6e-11
 Identities = 63/250 (25%), Positives = 98/250 (39%), Gaps = 41/250 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 63  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 121

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 122 MNYLEERRLVHRD---------------------------------LAARNVLVKTPQHV 148

Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 149 KITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 208

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++  EF
Sbjct: 209 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELII-EF 265

Query: 238 IQRHDTDPSQ 247
            +    DP +
Sbjct: 266 SKMA-RDPQR 274

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 60.7 bits (147), Expect = 7e-11
 Identities = 64/248 (25%), Positives = 97/248 (39%), Gaps = 41/248 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D  Y+V+  G       L +V +    GS+ D +R  + +L    +        KG
Sbjct: 63  MGSLDHAYIVRLLG-ICPGASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKG 121

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL   R +HR+                                 L A NILL ++   
Sbjct: 122 MYYLEEHRMVHRN---------------------------------LAARNILLKSDSIV 148

Query: 121 KLADFGVAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           ++ADFGVA  L  D      +   TP  WMA E I    Y   +D+WS G+T  E M+ G
Sbjct: 149 QIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYG 208

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
             PY  + P     ++  +      +P + T +    + +C + +   R T  E+ N EF
Sbjct: 209 AEPYAGMRPHEVPDLL--EKGERLAQPQICTIDVYMVMVKCWMIDENVRPTFKELAN-EF 265

Query: 238 IQRHDTDP 245
             R   DP
Sbjct: 266 -TRMARDP 272

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 60.8 bits (147), Expect = 7e-11
 Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 35/182 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEIATILCDTLK 59
           +++ +S +VV    +Y     L +V+     G +   I  +      E+       + L 
Sbjct: 54  LEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILC 113

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GLE LH    ++RD                                 LK  NILL+  GH
Sbjct: 114 GLEDLHRENTVYRD---------------------------------LKPENILLDDYGH 140

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            +++D G+A ++ +  + R  V GT  +MAPEV+    Y    D W LG    EM EG+ 
Sbjct: 141 IRISDLGLAVKIPEGESIRGRV-GTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQS 199

Query: 180 PY 181
           P+
Sbjct: 200 PF 201

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 60.8 bits (147), Expect = 8e-11
 Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 38/177 (21%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTLKGLEYL 64
           P++ + +  +     L+ VMEY   G   D+M   ++     E        +   GL +L
Sbjct: 61  PFLTQLHSCFQTMDRLYFVMEYVNGG---DLMYQIQQVGRFKEPHAVFYAAEIAIGLFFL 117

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H +  I+RD+K          LD                       N++L++EGH K+AD
Sbjct: 118 HSKGIIYRDLK----------LD-----------------------NVMLDSEGHIKIAD 144

Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           FG+  +         T  GTP ++APE+I    Y    D W+ G+   EM  G+ P+
Sbjct: 145 FGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPF 201

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 61/262 (23%), Positives = 94/262 (35%), Gaps = 68/262 (25%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATI---LCDTLKGLEY 63
             +V+ Y     +  L +V EYC      D+ +       + +   +   +   LKGL +
Sbjct: 59  KNIVRLYDVLHSDKKLTLVFEYCD----QDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAF 114

Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
            H    +HRD                                 LK  N+L+N  G  KLA
Sbjct: 115 CHSHNVLHRD---------------------------------LKPQNLLINKNGELKLA 141

Query: 124 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAE-GKP-- 179
           DFG+A      +   +  + T ++  P+V+     Y    DMWS G    E+A  G+P  
Sbjct: 142 DFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF 201

Query: 180 PYGDIH-PMRAIFMI---PT-------------KPPPSFREPDVW-------TPEFIDFV 215
           P  D+   ++ IF +   PT             KP P +                  D +
Sbjct: 202 PGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLL 261

Query: 216 SRCLVKNPEERATASEMLNHEF 237
              LV NP +R +A E L H +
Sbjct: 262 QNLLVCNPVQRISAEEALQHPY 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 60.0 bits (145), Expect = 1e-10
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWS 166
           LK  NILL+  GH +++D G+A Q+ +    R  V GT  +MAPEVI    Y    D W 
Sbjct: 128 LKPENILLDDRGHIRISDLGLAVQIPEGETVRGRV-GTVGYMAPEVINNEKYTFSPDWWG 186

Query: 167 LGITALEMAEGKPPY 181
           LG    EM +G+ P+
Sbjct: 187 LGCLIYEMIQGQSPF 201

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 52/180 (28%), Positives = 73/180 (40%), Gaps = 37/180 (20%)

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           +G+E+L  R+ IHRD                                 L A NILL+   
Sbjct: 184 RGMEFLASRKCIHRD---------------------------------LAARNILLSENN 210

Query: 119 HAKLADFGVAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-A 175
             K+ DFG+A  +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ +
Sbjct: 211 VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFS 270

Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
            G  PY  +  +   F    K     R P+  TPE    +  C   NPE+R T SE++  
Sbjct: 271 LGASPYPGVQ-IDEEFCRRLKEGTRMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEI 329

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 46/241 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q D P +VK  G   +   ++IVME    GS+   +R +K  L+  ++  +  D   G
Sbjct: 46  LKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAG 105

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +EYL  +  IHRD                                 L A N L+      
Sbjct: 106 MEYLESKNCIHRD---------------------------------LAARNCLVGENNVL 132

Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEG 177
           K++DFG++ +    +   +  +   P  W APE +    Y   +D+WS GI   E  + G
Sbjct: 133 KISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLG 192

Query: 178 KPPYGDIHPMRAIFMIPTK---PPPSFREPDVWTPEFI-DFVSRCLVKNPEERATASEML 233
             PY  +   +    I +    P P         PE I   + +C   +PE R + SE+ 
Sbjct: 193 DTPYPGMSNQQTRERIESGYRMPAPQL------CPEEIYRLMLQCWAYDPENRPSFSEIY 246

Query: 234 N 234
           N
Sbjct: 247 N 247

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 68/213 (31%)

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           L+GL Y+H +  +HRD                                 LK  N+L++  
Sbjct: 113 LRGLAYIHGQHILHRD---------------------------------LKPQNLLISYL 139

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-EIGYDCVADMWSLGITALEMAE 176
           G  KLADFG+A   +      ++ + T ++  P+V+     Y    D+W  G   +EM +
Sbjct: 140 GELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQ 199

Query: 177 GKPPYG-------DIHPMRAIFMIPTK--------------------PPPSFREPDVW-- 207
           G+P +         +  +  +  +PT+                     P   R   VW  
Sbjct: 200 GQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLR--VVWKR 257

Query: 208 ---TPEFIDFVSRCLVKNPEERATASEMLNHEF 237
               P+  D  S+ L+  P++R +A + L H +
Sbjct: 258 LSRPPKAEDLASQMLMMFPKDRISAQDALLHPY 290

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 59/217 (27%), Positives = 86/217 (39%), Gaps = 63/217 (29%)

Query: 50  IATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKA 109
           I T L   L+G+ Y H  R +HRD+K  +  L+ DR           TN +         
Sbjct: 104 IKTYLYQILRGIAYCHSHRVLHRDLKPQN--LLIDRR----------TNAL--------- 142

Query: 110 GNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG---YDCVADMWS 166
                      KLADFG+A      +      + T ++ APE++  +G   Y    D+WS
Sbjct: 143 -----------KLADFGLARAFGIPVRTFTHEVVTLWYRAPEIL--LGSRHYSTPVDIWS 189

Query: 167 LGITALEMAEGKPPY-GD--IHPMRAIFMIPTKPP-----------------PSFREPDV 206
           +G    EM   KP + GD  I  +  IF I   P                  P +   D+
Sbjct: 190 VGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDL 249

Query: 207 WT------PEFIDFVSRCLVKNPEERATASEMLNHEF 237
            T      P  +D +S+ L  +P +R TA   L HE+
Sbjct: 250 ATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEHEY 286

Length = 294

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 42/208 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P ++   G   K+  + I+ E+   G++   +R      +  ++  +L     G
Sbjct: 59  MGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAG 118

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 119 MKYLSEMNYVHRD---------------------------------LAARNILVNSNLVC 145

Query: 121 KLADFGVAGQLTDTMAK--RNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-M 174
           K++DFG++  L D  +     + +G      W APE I    +   +D+WS GI   E M
Sbjct: 146 KVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVM 205

Query: 175 AEGKPPYGDIHPMRAIFMIPTK---PPP 199
           + G+ PY D+     I  I      PPP
Sbjct: 206 SYGERPYWDMSNQDVINAIEQDYRLPPP 233

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 54/209 (25%), Positives = 85/209 (40%), Gaps = 51/209 (24%)

Query: 45  LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTL 104
            SE E+     + + GLE++H R  ++RD                               
Sbjct: 94  FSEAEMRFYAAEIILGLEHMHNRFVVYRD------------------------------- 122

Query: 105 FRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDCVAD 163
             LK  NILL+  GH +++D G+A   +    K +  +GT  +MAPEV+Q+ + YD  AD
Sbjct: 123 --LKPANILLDEHGHVRISDLGLACDFSKK--KPHASVGTHGYMAPEVLQKGVAYDSSAD 178

Query: 164 MWSLGITALEMAEGKPPY-----GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRC 218
            +SLG    ++  G  P+      D H +    M  T        PD ++PE    +   
Sbjct: 179 WFSLGCMLFKLLRGHSPFRQHKTKDKHEIDR--MTLTMAV---ELPDSFSPELRSLLEGL 233

Query: 219 LVKNPEER-----ATASEMLNHEFIQRHD 242
           L ++   R       A E+  H F +  D
Sbjct: 234 LQRDVNRRLGCLGRGAQEVKEHPFFRSLD 262

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 38/162 (23%)

Query: 22  LWIVMEYCGAGSVSDIMRLRKKTL-SEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           L+IVME    G++ + +R R + L S  ++     D  +G+EYL  ++ +HRD       
Sbjct: 73  LYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRD------- 125

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L A NIL++ +G AK++DFG+A     +M   N+
Sbjct: 126 --------------------------LAARNILVSEDGVAKVSDFGLAR--VGSMGVDNS 157

Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPY 181
            +    W APE ++   +   +D+WS G+   E+ + G+ PY
Sbjct: 158 KLPVK-WTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPY 198

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 72/237 (30%)

Query: 33  SVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIK 92
           ++ ++++ RK+ L E  + + +   LK L+++H     HRDIK                 
Sbjct: 85  NLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPE--------------- 129

Query: 93  CNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG----VAGQLTDTMAKRNTVIGTPFWM 148
                             NIL+  +   KLADFG    +  +   T       I T ++ 
Sbjct: 130 ------------------NILIKDD-ILKLADFGSCRGIYSKPPYT-----EYISTRWYR 165

Query: 149 APEVIQEIG-YDCVADMWSLGITALEMAEGKP--PYGD-------IH-----PMRAI--- 190
           APE +   G Y    D+W++G    E+    P  P  +       IH     P   +   
Sbjct: 166 APECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKK 225

Query: 191 --------FMIPTKPPPSFRE--PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
                   +  P+K     R+  P+  + E +D + + L  +P+ER TA + L H +
Sbjct: 226 FRKSRHMNYNFPSKKGTGLRKLLPNA-SAEGLDLLKKLLAYDPDERITAKQALRHPY 281

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 58.5 bits (141), Expect = 4e-10
 Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 35/182 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEIATILCDTLK 59
           +++ +S +VV    +Y     L +V+     G +   I  + +    E        +   
Sbjct: 54  LEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICC 113

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GLE LH  R ++RD                                 LK  NILL+  GH
Sbjct: 114 GLEDLHQERIVYRD---------------------------------LKPENILLDDHGH 140

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            +++D G+A  + +    +  V GT  +MAPEV++   Y    D W+LG    EM  G+ 
Sbjct: 141 IRISDLGLAVHVPEGQTIKGRV-GTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQS 199

Query: 180 PY 181
           P+
Sbjct: 200 PF 201

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 58.2 bits (141), Expect = 5e-10
 Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 64/209 (30%)

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           L+G+ + H RR +HRD                                 LK  N+L++ +
Sbjct: 111 LQGILFCHSRRVLHRD---------------------------------LKPQNLLIDNK 137

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG---YDCVADMWSLGITALEM 174
           G  KLADFG+A      +      + T ++ APEV+  +G   Y    D+WS+G    EM
Sbjct: 138 GVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVL--LGSPRYSTPVDIWSIGTIFAEM 195

Query: 175 AEGKPPY-GD--IHPMRAIFMIPTKP-----PPSFREPDV------WTPEF--------- 211
           A  KP + GD  I  +  IF I   P     P     PD       W             
Sbjct: 196 ATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLD 255

Query: 212 ---IDFVSRCLVKNPEERATASEMLNHEF 237
              +D + + L+ +P +R +A + LNH +
Sbjct: 256 EDGLDLLEKMLIYDPAKRISAKKALNHPY 284

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 57.9 bits (140), Expect = 6e-10
 Identities = 53/209 (25%), Positives = 79/209 (37%), Gaps = 64/209 (30%)

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           LKG+ + H  R +HRD                                 LK  N+L+N  
Sbjct: 110 LKGIAFCHENRVLHRD---------------------------------LKPQNLLINKR 136

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG---YDCVADMWSLGITALEM 174
           G  KLADFG+A      +   +  + T ++ AP+V+  +G   Y    D+WS+G    EM
Sbjct: 137 GELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVL--LGSRTYSTSIDIWSVGCIMAEM 194

Query: 175 AEGKPPY---GDIHPMRAIFMI-------------------PTKPPPSFREPDVWTPEF- 211
             G+P +    +   +  IF I                   PT P    ++     P   
Sbjct: 195 ITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHAD 254

Query: 212 ---IDFVSRCLVKNPEERATASEMLNHEF 237
              ID + R L  NPE R +A + L H +
Sbjct: 255 PLGIDLLHRLLQLNPELRISAHDALQHPW 283

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 64/260 (24%), Positives = 92/260 (35%), Gaps = 82/260 (31%)

Query: 21  DLWIVMEYCGAGSVSDI-MRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           D+++VME   A     I M L  + +S      +L   L G+++LH    IHRD      
Sbjct: 95  DVYLVMELMDANLCQVIQMDLDHERMS-----YLLYQMLCGIKHLHSAGIIHRD------ 143

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL-TDTMAKR 138
                                      LK  NI++ ++   K+ DFG+A    T  M   
Sbjct: 144 ---------------------------LKPSNIVVKSDCTLKILDFGLARTAGTSFMMTP 176

Query: 139 NTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             V  T ++ APEVI  +GY    D+WS+G    EM  G    P    I     I     
Sbjct: 177 YVV--TRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLG 234

Query: 196 KPPPSFRE-------------------------PDVWTP------------EFIDFVSRC 218
            P   F                           PDV  P            +  D +S+ 
Sbjct: 235 TPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKM 294

Query: 219 LVKNPEERATASEMLNHEFI 238
           LV +PE+R +  + L H +I
Sbjct: 295 LVIDPEKRISVDDALQHPYI 314

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 57.6 bits (139), Expect = 7e-10
 Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 37/188 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P ++   G   K+  + IV EY   GS+   +R      +  ++  +L     G
Sbjct: 59  MGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASG 118

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 119 MKYLSDMGYVHRD---------------------------------LAARNILVNSNLVC 145

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W APE I    +   +D+WS GI   E M+ 
Sbjct: 146 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSY 205

Query: 177 GKPPYGDI 184
           G+ PY ++
Sbjct: 206 GERPYWEM 213

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 57.7 bits (139), Expect = 7e-10
 Identities = 66/251 (26%), Positives = 99/251 (39%), Gaps = 43/251 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M    SPYV +  G    +T + +V +    G + D +R  K  +   ++        KG
Sbjct: 63  MAGVGSPYVCRLLGICLTST-VQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKG 121

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL   R +HRD                                 L A N+L+ +  H 
Sbjct: 122 MSYLEEVRLVHRD---------------------------------LAARNVLVKSPNHV 148

Query: 121 KLADFGVAGQLTDTMAKRNTVIG--TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K+ DFG+A +L D         G   P  WMA E I    +   +D+WS G+T  E M  
Sbjct: 149 KITDFGLA-RLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTF 207

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE 236
           G  PY  I P R I  +  K      +P + T +    + +C + + E R    E++  E
Sbjct: 208 GAKPYDGI-PAREIPDLLEK-GERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELV-DE 264

Query: 237 FIQRHDTDPSQ 247
           F  R   DPS+
Sbjct: 265 F-SRMARDPSR 274

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 59/231 (25%), Positives = 97/231 (41%), Gaps = 55/231 (23%)

Query: 22  LWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLHL 66
           L++V+EY   G++ D +R R+               +TL++ ++ +      +G+E+L  
Sbjct: 91  LYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLAS 150

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA-KLADF 125
           ++ IHRD                                 L A N+L+ TE H  K+ADF
Sbjct: 151 KKCIHRD---------------------------------LAARNVLV-TEDHVMKIADF 176

Query: 126 GVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYG 182
           G+A  +      R T  G  P  WMAPE + +  Y   +D+WS G+   E    G  PY 
Sbjct: 177 GLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYP 236

Query: 183 DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
            I P+  +F +  K      +P   T E    +  C  + P +R T  +++
Sbjct: 237 GI-PVEELFKL-LKEGYRMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLV 285

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 56.9 bits (137), Expect = 1e-09
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 14/159 (8%)

Query: 91  IKCNVITNQIYKTLFR-LKAGNILLNTEGHAKLADFGVAGQLTD--TMAKRNTVIGTPFW 147
           I C ++       ++R +K  N+LL+ +G+ +L+D G+A +L D  T+ +R    GT  +
Sbjct: 104 ITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQR---AGTNGY 160

Query: 148 MAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA---IFMIPTKPPPSFREP 204
           MAPE+++E  Y    D +++G +  EM  G+ P+ D     A   +     +    F E 
Sbjct: 161 MAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKF-EH 219

Query: 205 DVWTPEFIDFVSRCLVKNPEERATASEMLN----HEFIQ 239
             +T E  D     L K PE+R  + E  +    HEF +
Sbjct: 220 QNFTEESKDICRLFLAKKPEDRLGSREKNDDPRKHEFFK 258

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 41/180 (22%)

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           +G+E+L  R+ IHRD                                 L A NILL+   
Sbjct: 185 RGMEFLASRKCIHRD---------------------------------LAARNILLSENN 211

Query: 119 HAKLADFGVAGQL---TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM 174
             K+ DFG+A  +    D + K +  +  P  WMAPE I +  Y   +D+WS G+   E+
Sbjct: 212 VVKICDFGLARDIYKDPDYVRKGSARL--PLKWMAPESIFDKVYTTQSDVWSFGVLLWEI 269

Query: 175 -AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
            + G  PY  +  +   F    K     R P+  TPE    +  C   +P+ER T S ++
Sbjct: 270 FSLGASPYPGVQ-INEEFCQRLKDGTRMRAPENATPEIYRIMLACWQGDPKERPTFSALV 328

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 42/172 (24%)

Query: 9   VVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKTLSEDEI-ATILCDTLKGLEYLH 65
           +VKY G   +     L ++MEY   GS+ D +   K  L++  + A  +C+   G+ YLH
Sbjct: 68  IVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICE---GMAYLH 124

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +  IHRD                                 L A N+LL+ +   K+ DF
Sbjct: 125 SQHYIHRD---------------------------------LAARNVLLDNDRLVKIGDF 151

Query: 126 GVAGQL-TDTMAKRNTVIG-TP-FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           G+A  +       R    G +P FW A E ++E  +   +D+WS G+T  E+
Sbjct: 152 GLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYEL 203

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 54/246 (21%), Positives = 93/246 (37%), Gaps = 57/246 (23%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT------LSEDEIATIL 54
           M   + P +VK  G    N   +I+ME    G +   +R  +        L+  E+  I 
Sbjct: 53  MSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDIC 112

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
            D  KG  YL     IHRD                                 L A N L+
Sbjct: 113 LDVAKGCVYLEQMHFIHRD---------------------------------LAARNCLV 139

Query: 115 NTEGHA-----KLADFGVAGQL--TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSL 167
           + +G+      K+ DFG+A  +  +D   K    +    WMAPE + +  +   +D+WS 
Sbjct: 140 SEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSF 199

Query: 168 GITALE-MAEGKPPYGDIHPMRAIFMIPT----KPPPSFREPDVWTPEFIDFVSRCLVKN 222
           G+   E +  G+ PY  ++    +  +      + P +  +  ++       ++ C  ++
Sbjct: 200 GVLMWEILTLGQQPYPALNNQEVLQHVTAGGRLQKPENCPD-KIY-----QLMTNCWAQD 253

Query: 223 PEERAT 228
           P ER T
Sbjct: 254 PSERPT 259

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 56/232 (24%), Positives = 87/232 (37%), Gaps = 56/232 (24%)

Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL--------KG 60
           +V+ Y    K   ++I+ EY   GS+ D ++        DE   +L   L        +G
Sbjct: 63  LVRLYAVVTKEEPIYIITEYMAKGSLLDFLK-------SDEGGKVLLPKLIDFSAQIAEG 115

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + Y+  +  IHRD                                 L+A N+L++     
Sbjct: 116 MAYIERKNYIHRD---------------------------------LRAANVLVSESLMC 142

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-GK 178
           K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   GK
Sbjct: 143 KIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGK 202

Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWT--PEFIDFVSRCLVKNPEERAT 228
            PY    P  +   + +     +R P +     E  D +  C  +  EER T
Sbjct: 203 IPY----PGMSNSDVMSALQRGYRMPRMENCPDELYDIMKTCWKEKAEERPT 250

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 53/224 (23%), Positives = 84/224 (37%), Gaps = 63/224 (28%)

Query: 45  LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTL 104
           +S   +   L   L+GL Y H R+ +HRD                               
Sbjct: 101 MSMHNVKIFLYQILRGLAYCHRRKVLHRD------------------------------- 129

Query: 105 FRLKAGNILLNTEGHAKLADFGVA-GQLTDTMAKRNTVIGTPFWMAPEV-IQEIGYDCVA 162
             LK  N+L+N  G  KLADFG+A  +   T    N V+ T ++  P+V +    Y    
Sbjct: 130 --LKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVV-TLWYRPPDVLLGSSEYSTQI 186

Query: 163 DMWSLGITALEMAEGKPPY------GDIHPMRAIFMIPT--------------------- 195
           DMW +G    EMA G+P +       ++H +  +   PT                     
Sbjct: 187 DMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKY 246

Query: 196 KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           KP P          E I+ +++ L    ++R +A E + H + +
Sbjct: 247 KPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKHAYFR 290

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 68/233 (29%)

Query: 40  LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQ 99
           +  + LS D +   L   L+GL+YLH    +HRDIK G                      
Sbjct: 95  VSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPG---------------------- 132

Query: 100 IYKTLFRLKAGNILLNTEGHAKLADFGVAG-QLTDTMAKRNTVIGTPFWMAPEVIQEIG- 157
                      N+L+N+    K+ DFG+A  +  D        + T ++ APE++  +G 
Sbjct: 133 -----------NLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEIL--MGS 179

Query: 158 --YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---------------------- 193
             Y    D+WS+G    E+   +  +    P++ + +I                      
Sbjct: 180 RHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAH 239

Query: 194 ----PTKPPPSFREPDVWTP---EFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
               P KPP       + +    E +  + R LV +P++R +A++ L H ++ 
Sbjct: 240 ILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYLD 292

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 55.4 bits (133), Expect = 4e-09
 Identities = 52/205 (25%), Positives = 79/205 (38%), Gaps = 43/205 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q     +++  G   K     I+ EY   G++   +R      S  ++  +L     G
Sbjct: 60  MGQFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAG 119

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 120 MKYLSDMNYVHRD---------------------------------LAARNILVNSNLEC 146

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W APE I    +   +D+WS GI   E M+ 
Sbjct: 147 KVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSF 206

Query: 177 GKPPYGDI---HPMRAI---FMIPT 195
           G+ PY D+     M+AI   F +P 
Sbjct: 207 GERPYWDMSNHEVMKAINDGFRLPA 231

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 43/190 (22%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + Q D   +V+  G   +   + IV EY   G++   +R  +  L   ++  +L     G
Sbjct: 60  LGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASG 119

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +H+                                  L A  +L+N++   
Sbjct: 120 MKYLSEMGYVHK---------------------------------GLAAHKVLVNSDLVC 146

Query: 121 KLADFGVAGQ-----LTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALE-M 174
           K++ F    +     +  TM+ ++ V+    W APE IQ   +   +D+WS GI   E M
Sbjct: 147 KISGFRRLQEDKSEAIYTTMSGKSPVL----WAAPEAIQYHHFSSASDVWSFGIVMWEVM 202

Query: 175 AEGKPPYGDI 184
           + G+ PY D+
Sbjct: 203 SYGERPYWDM 212

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 55.8 bits (134), Expect = 4e-09
 Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 53/243 (21%)

Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + LS  ++ + 
Sbjct: 86  IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSC 145

Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 146 AYQVARGMEYLASKKCIHRD---------------------------------LAARNVL 172

Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +  +   K+ADFG+A  +      + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 173 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLL 232

Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  + P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 233 WEIFTLGGSPYPGV-PVEELFKL-LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK 290

Query: 231 EML 233
           +++
Sbjct: 291 QLV 293

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 62/266 (23%), Positives = 96/266 (36%), Gaps = 64/266 (24%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ + P +VK          L++V E+        +       +    I + L   L+G
Sbjct: 53  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQG 112

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L + H  R +HRD                                 LK  N+L+NTEG  
Sbjct: 113 LAFCHSHRVLHRD---------------------------------LKPQNLLINTEGAI 139

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG---YDCVADMWSLGITALEMAEG 177
           KLADFG+A      +      + T ++ APE++  +G   Y    D+WSLG    EM   
Sbjct: 140 KLADFGLARAFGVPVRTYTHEVVTLWYRAPEIL--LGCKYYSTAVDIWSLGCIFAEMVTR 197

Query: 178 K---PPYGDIHPMRAIFMIPTKP-----PPSFREPDV------WTP------------EF 211
           +   P   +I  +  IF     P     P     PD       W              + 
Sbjct: 198 RALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDG 257

Query: 212 IDFVSRCLVKNPEERATASEMLNHEF 237
            D +S+ L  +P +R +A   L H F
Sbjct: 258 RDLLSQMLHYDPNKRISAKAALAHPF 283

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 55.2 bits (133), Expect = 5e-09
 Identities = 53/249 (21%), Positives = 92/249 (36%), Gaps = 69/249 (27%)

Query: 22  LWIVMEYCGAGSVSDIMRLRKKT---LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS 78
           L++V EY  +     +    +     L    I + +   LKG+ + H    +HRD     
Sbjct: 81  LYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRD----- 135

Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA-KLADFGVAGQLTDTMAK 137
                                       LK  N+L++ +    K+AD G+    +  +  
Sbjct: 136 ----------------------------LKPQNLLVDKQKGLLKIADLGLGRAFSIPVKS 167

Query: 138 RNTVIGTPFWMAPEVIQEIG---YDCVADMWSLGITALEMAEGKPPY-GD--IHPMRAIF 191
               I T ++ APEV+  +G   Y    D+WS+G    EM+  +P + GD  +  +  IF
Sbjct: 168 YTHEIVTLWYRAPEVL--LGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIF 225

Query: 192 MI---------------------PTKPPPSFRE--PDVWTPEFIDFVSRCLVKNPEERAT 228
            +                     P   P       PD+ +PE +D + + L  +P +R +
Sbjct: 226 KLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDL-SPEGLDLLQKMLRYDPAKRIS 284

Query: 229 ASEMLNHEF 237
           A   L H +
Sbjct: 285 AKAALTHPY 293

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 55.0 bits (132), Expect = 7e-09
 Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 53/229 (23%)

Query: 22  LWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLHL 66
           L++++EY   G++ + +R R+               + LS  ++ +      +G+EYL  
Sbjct: 93  LYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLES 152

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           RR IHRD                                 L A N+L+  +   K+ADFG
Sbjct: 153 RRCIHRD---------------------------------LAARNVLVTEDNVMKIADFG 179

Query: 127 VAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGD 183
           +A  + D    + T  G  P  WMAPE + +  Y   +D+WS GI   E+   G  PY  
Sbjct: 180 LARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPG 239

Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
           I P+  +F +  +      +P   T E    +  C    P +R T  ++
Sbjct: 240 I-PVEELFKL-LREGHRMDKPSNCTHELYMLMRECWHAVPTQRPTFKQL 286

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 59/254 (23%), Positives = 91/254 (35%), Gaps = 74/254 (29%)

Query: 21  DLWIVMEYCG---AGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG 77
             ++V E+C    AG +S+         +  EI  ++   L GL Y+H  + +HRD    
Sbjct: 93  SFYLVFEFCEHDLAGLLSNK----NVKFTLSEIKKVMKMLLNGLYYIHRNKILHRD---- 144

Query: 78  SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL-TDTMA 136
                                        +KA NIL+  +G  KLADFG+A        +
Sbjct: 145 -----------------------------MKAANILITKDGILKLADFGLARAFSLSKNS 175

Query: 137 KRN---TVIGTPFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPY-GD--IHPMRA 189
           K N     + T ++  PE+ + E  Y    DMW  G    EM    P   G+   H +  
Sbjct: 176 KPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTL 235

Query: 190 IFMIPTKPPPS---------------------FREPD-----VWTPEFIDFVSRCLVKNP 223
           I  +     P                       +  +     V  P  +D + + LV +P
Sbjct: 236 ISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDP 295

Query: 224 EERATASEMLNHEF 237
            +R  A   LNH+F
Sbjct: 296 AKRIDADTALNHDF 309

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 61/254 (24%), Positives = 90/254 (35%), Gaps = 86/254 (33%)

Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           TDL   M+ CG G            LS   +   L   L+GL Y H RR +HRD      
Sbjct: 87  TDLKQYMDDCGGG------------LSMHNVRLFLFQLLRGLAYCHQRRVLHRD------ 128

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA-GQLTDTMAKR 138
                                      LK  N+L++  G  KLADFG+A  +   +    
Sbjct: 129 ---------------------------LKPQNLLISERGELKLADFGLARAKSVPSKTYS 161

Query: 139 NTVIGTPFWMAPEVIQEIG---YDCVADMWSLGITALEMAEGKP---------------- 179
           N V+ T ++  P+V+  +G   Y    DMW +G    EMA G+P                
Sbjct: 162 NEVV-TLWYRPPDVL--LGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIF 218

Query: 180 -----PYGDIHPMRAIFMIPTKPPPSFREP------DVWT-----PEFIDFVSRCLVKNP 223
                P  +  P   +   P   P SF         +        P   +   + L   P
Sbjct: 219 RVLGTPTEETWP--GVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEP 276

Query: 224 EERATASEMLNHEF 237
           ++R +A+E + H +
Sbjct: 277 KKRISAAEAMKHPY 290

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 59/237 (24%), Positives = 92/237 (38%), Gaps = 50/237 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLK 59
           M++     +V+ Y    +   ++IV EY   GS+ D ++  + K L   ++  +     +
Sbjct: 55  MKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAE 114

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ YL  R  IHRD                                 L A NIL+     
Sbjct: 115 GMAYLESRNYIHRD---------------------------------LAARNILVGENLV 141

Query: 120 AKLADFGVAGQLTDT--MAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE- 173
            K+ADFG+A  + D    A+     G  F   W APE      +   +D+WS GI   E 
Sbjct: 142 CKIADFGLARLIEDDEYTARE----GAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEI 197

Query: 174 MAEGKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           +  G+ PY  +     +  +       +R   P     E  D + +C  K+PEER T
Sbjct: 198 VTYGRVPYPGMTNREVLEQVER----GYRMPRPPNCPEELYDLMLQCWDKDPEERPT 250

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 53/243 (21%)

Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + L+  ++ + 
Sbjct: 80  IINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSC 139

Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 140 AYQVARGMEYLASQKCIHRD---------------------------------LAARNVL 166

Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +  +   K+ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 167 VTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLL 226

Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 227 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTHELYMIMRECWHAVPSQRPTFK 284

Query: 231 EML 233
           +++
Sbjct: 285 QLV 287

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 53/235 (22%), Positives = 89/235 (37%), Gaps = 42/235 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q   P +V+  G   +   ++IVME    G     +R     L   E+  ++ +   G
Sbjct: 47  LKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAG 106

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +EYL  +  IHRD                                 L A N L+  +   
Sbjct: 107 MEYLESKHCIHRD---------------------------------LAARNCLVTEKNVL 133

Query: 121 KLADFGVAGQLTDTM-AKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K++DFG++ +  D + A    +   P  W APE +    Y   +D+WS GI   E  + G
Sbjct: 134 KISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLG 193

Query: 178 KPPYGDI--HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
             PY ++     R       + P     P++        + RC   +P +R + S
Sbjct: 194 AVPYANLSNQQTREAIEQGVRLPC----PELCPDAVYRLMERCWEYDPGQRPSFS 244

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 52/146 (35%), Positives = 69/146 (47%), Gaps = 24/146 (16%)

Query: 107 LKAGNILLNTEGH-AKLADFGVAGQLTDTMAKRNTVIG----TPF-WMAPEVIQEIGYDC 160
           + A N+LL T+G  AK+ DFG+A    D M   N V+      P  WMAPE I    +DC
Sbjct: 238 VAARNVLL-TDGRVAKICDFGLA---RDIMNDSNYVVKGNARLPVKWMAPESI----FDC 289

Query: 161 V----ADMWSLGITALEM-AEGKPPYGDIHPMRAIF-MIPTKPPPSFREPDVWTPEFIDF 214
           V    +D+WS GI   E+ + GK PY  I      + M+  K       PD   PE    
Sbjct: 290 VYTVQSDVWSYGILLWEIFSLGKSPYPGILVNSKFYKMV--KRGYQMSRPDFAPPEIYSI 347

Query: 215 VSRCLVKNPEERATASEMLNHEFIQR 240
           +  C    P ER T S++   + IQR
Sbjct: 348 MKMCWNLEPTERPTFSQI--SQLIQR 371

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 38/134 (28%), Positives = 49/134 (36%), Gaps = 34/134 (25%)

Query: 41  RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQI 100
           R + L  D+   I    L+GL YLH +R IHRD+K                         
Sbjct: 150 RSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTE----------------------- 186

Query: 101 YKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC 160
                     NI +N      + D G A Q          + GT    APEV+    Y+ 
Sbjct: 187 ----------NIFINDVDQVCIGDLG-AAQFPVVAPAFLGLAGTVETNAPEVLARDKYNS 235

Query: 161 VADMWSLGITALEM 174
            AD+WS GI   EM
Sbjct: 236 KADIWSAGIVLFEM 249

Length = 357

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 53.1 bits (127), Expect = 4e-08
 Identities = 62/257 (24%), Positives = 100/257 (38%), Gaps = 77/257 (29%)

Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++    L  + ++ +L   L G+++LH    IHRD       
Sbjct: 100 DVYLVMELMDA----NLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 148

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A            
Sbjct: 149 --------------------------LKPSNIVVKSDCTLKILDFGLARTACTNFMMTPY 182

Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY-GDIH------------PM 187
           V+ T ++ APEVI  +GY    D+WS+G    E+ +G   + G  H              
Sbjct: 183 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTP 241

Query: 188 RAIFMI-------------PTKPPPSFRE--PD-----------VWTPEFIDFVSRCLVK 221
            A FM              P  P  SF E  PD           + T +  D +S+ LV 
Sbjct: 242 SAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVI 301

Query: 222 NPEERATASEMLNHEFI 238
           +P++R +  E L H +I
Sbjct: 302 DPDKRISVDEALRHPYI 318

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 38/133 (28%)

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           KG+EYL  ++ +HRD                                 L A N +L+   
Sbjct: 109 KGMEYLASKKFVHRD---------------------------------LAARNCMLDESF 135

Query: 119 HAKLADFGVAGQLTDT---MAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE- 173
             K+ADFG+A  + D        +T    P  WMA E +Q   +   +D+WS G+   E 
Sbjct: 136 TVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL 195

Query: 174 MAEGKPPYGDIHP 186
           M  G PPY D+  
Sbjct: 196 MTRGAPPYPDVDS 208

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 52.3 bits (125), Expect = 4e-08
 Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 36/126 (28%)

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           L+GL Y H R+ +HRD                                 LK  N+L+N +
Sbjct: 113 LRGLSYCHKRKILHRD---------------------------------LKPQNLLINEK 139

Query: 118 GHAKLADFGVA-GQLTDTMAKRNTVIGTPFWMAPEV-IQEIGYDCVADMWSLGITALEMA 175
           G  KLADFG+A  +   T    N V+ T ++  P+V +    Y    DMW +G    EMA
Sbjct: 140 GELKLADFGLARAKSVPTKTYSNEVV-TLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMA 198

Query: 176 EGKPPY 181
            G+P +
Sbjct: 199 TGRPMF 204

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 10/133 (7%)

Query: 107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVI-GTPF----WMAPEVIQEIGYDCV 161
           L A N+L+      K+ DFG+A    D M   N +  G+ F    WMAPE I    Y  +
Sbjct: 265 LAARNVLICEGKLVKICDFGLA---RDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTL 321

Query: 162 ADMWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLV 220
           +D+WS GI   E+   G  PY ++ PM   F    K      +P   + E  + + +C  
Sbjct: 322 SDVWSFGILLWEIFTLGGTPYPEL-PMNEQFYNAIKRGYRMAKPAHASDEIYEIMQKCWE 380

Query: 221 KNPEERATASEML 233
           +  E R   S+++
Sbjct: 381 EKFEIRPDFSQLV 393

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 52.0 bits (124), Expect = 6e-08
 Identities = 64/257 (24%), Positives = 95/257 (36%), Gaps = 55/257 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D P++V+  G     T + +V +    G + D +   K  +    +        KG
Sbjct: 63  MASMDHPHLVRLLGVCLSPT-IQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKG 121

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ +  H 
Sbjct: 122 MMYLEERRLVHRD---------------------------------LAARNVLVKSPNHV 148

Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + N   G  P  WMA E I    +   +D+WS G+T  E M  G
Sbjct: 149 KITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFG 208

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFRE-------PDVWTPEFIDFVSRCLVKNPEERATAS 230
             PY           IPT+  P   E       P + T +    + +C + + + R    
Sbjct: 209 GKPYDG---------IPTREIPDLLEKGERLPQPPICTIDVYMVMVKCWMIDADSRPKFK 259

Query: 231 EMLNHEFIQRHDTDPSQ 247
           E L  EF  R   DP +
Sbjct: 260 E-LAAEF-SRMARDPQR 274

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 40/172 (23%)

Query: 9   VVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G   ++    + ++ME+  +GS+ + +   K  ++  +         KG++YL  
Sbjct: 68  IVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGS 127

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ +HRD                                 L A N+L+ +E   K+ DFG
Sbjct: 128 RQYVHRD---------------------------------LAARNVLVESEHQVKIGDFG 154

Query: 127 VAGQLTDTMAKRNTV---IGTP-FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   + +T  +  TV   + +P FW APE + +  +   +D+WS G+T  E+
Sbjct: 155 LTKAI-ETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYEL 205

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 51.9 bits (124), Expect = 7e-08
 Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 53/243 (21%)

Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + ++  ++ + 
Sbjct: 83  IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSC 142

Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 143 TYQVARGMEYLASQKCIHRD---------------------------------LAARNVL 169

Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      K+ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 170 VTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 229

Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P  R T  
Sbjct: 230 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAIPSHRPTFK 287

Query: 231 EML 233
           +++
Sbjct: 288 QLV 290

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 52/242 (21%), Positives = 85/242 (35%), Gaps = 83/242 (34%)

Query: 45  LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTL 104
           L++    + +   L GL+Y+H    +HRD                               
Sbjct: 102 LTDAHFQSFIYQILCGLKYIHSANVLHRD------------------------------- 130

Query: 105 FRLKAGNILLNTEGHAKLADFGVA-----------GQLTDTMAKRNTVIGTPFWMAPEVI 153
             LK GN+L+N +   K+ DFG+A           G +T+ +A R       ++ APE++
Sbjct: 131 --LKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATR-------WYRAPEIM 181

Query: 154 QEI-GYDCVADMWSLGITALEMAEGKPPY---------------------------GDIH 185
                Y    D+WS+G    E+   KP +                           G   
Sbjct: 182 LSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPK 241

Query: 186 PMRAIFMIPTKPPPSFRE--PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR-HD 242
               I  +P  P   F    P+   P  +D + + L  +P +R +  E L H ++   HD
Sbjct: 242 AQNYIRSLPNIPKKPFESIFPNA-NPLALDLLEKLLAFDPTKRISVEEALEHPYLAIWHD 300

Query: 243 TD 244
            D
Sbjct: 301 PD 302

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 57/187 (30%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATI---LCDTLKGL 61
           D+P  +K Y S        ++M+Y   G + D+++ ++  LSE E+  I   L +    L
Sbjct: 67  DNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLK-KEGKLSEAEVKKIIRQLVE---AL 122

Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
             LH    IH DIK  +  ++YDR            ++IY                    
Sbjct: 123 NDLHKHNIIHNDIKLEN--VLYDRA----------KDRIY-------------------- 150

Query: 122 LADFGVAGQLTDTMAKRNTVIGTPF-------WMAPEVIQEIGYDCVADMWSLGITALEM 174
           L D+G        + K    IGTP        + +PE I+   YD   D W++G+   E+
Sbjct: 151 LCDYG--------LCKI---IGTPSCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYEL 199

Query: 175 AEGKPPY 181
             GK P+
Sbjct: 200 LTGKHPF 206

Length = 267

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 54/257 (21%), Positives = 84/257 (32%), Gaps = 67/257 (26%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL------RKKTLSEDEIATIL 54
           M + +   +V+  G  F+    +I++E    G +   +R       R  +L+  ++    
Sbjct: 63  MSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCA 122

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
            D  KG +YL     IHRDI A                                  N LL
Sbjct: 123 RDVAKGCKYLEENHFIHRDIAAR---------------------------------NCLL 149

Query: 115 NTEGH---AKLADFGVAGQL--TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGI 169
             +G    AK+ADFG+A  +       K    +    WM PE   +  +    D+WS G+
Sbjct: 150 TCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGV 209

Query: 170 TALE-MAEGKPPYGDIHPMRAIFMIPT----KPPPSFREP------DVWTPEFIDFVSRC 218
              E  + G  PY        +  +       PP     P      D W           
Sbjct: 210 LLWEIFSLGYMPYPGRTNQEVMEFVTGGGRLDPPKGCPGPVYRIMTDCWQHT-------- 261

Query: 219 LVKNPEERATASEMLNH 235
               PE+R   + +L  
Sbjct: 262 ----PEDRPNFATILER 274

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 64/248 (25%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT--------LSEDEIATILCDTL 58
             VV+  G   +    ++++EY   G +   +R  K          LS  +   +     
Sbjct: 68  KNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIA 127

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+++L   R +HRD                                 L A N L++++ 
Sbjct: 128 LGMDHLSNARFVHRD---------------------------------LAARNCLVSSQR 154

Query: 119 HAKLADFGVAGQLTDTMAK-----RNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITAL 172
             K++   ++    D         RN +I  P  W+APE +QE  +   +D+WS G+   
Sbjct: 155 EVKVSLLSLS---KDVYNSEYYKLRNALI--PLRWLAPEAVQEDDFSTKSDVWSFGVLMW 209

Query: 173 EM-AEGKPPYGDIHPMRAIFMIPTK----PPPSFREPDVWTPEFI-DFVSRCLVKNPEER 226
           E+  +G+ P+  +     +  +       P P         P  +   ++RC   NP++R
Sbjct: 210 EVFTQGELPFYGLSDEEVLNRLQAGKLELPVPE------GCPSRLYKLMTRCWAVNPKDR 263

Query: 227 ATASEMLN 234
            + SE+++
Sbjct: 264 PSFSELVS 271

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 53/200 (26%), Positives = 77/200 (38%), Gaps = 46/200 (23%)

Query: 45  LSEDEIATILCDTL-------KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVIT 97
           L EDE+A    D L       KG+ +L  +  IHRD                        
Sbjct: 204 LEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRD------------------------ 239

Query: 98  NQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT---DTMAKRNTVIGTPFWMAPEVIQ 154
                    L A NILL      K+ DFG+A  +    + + K N  +    WMAPE I 
Sbjct: 240 ---------LAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVK-WMAPESIF 289

Query: 155 EIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFID 213
              Y   +D+WS GI   E+ + G  PY  + P+ + F    K       P+    E  D
Sbjct: 290 NCVYTFESDVWSYGILLWEIFSLGSSPYPGM-PVDSKFYKMIKEGYRMLSPECAPSEMYD 348

Query: 214 FVSRCLVKNPEERATASEML 233
            +  C   +P +R T  +++
Sbjct: 349 IMKSCWDADPLKRPTFKQIV 368

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 60/247 (24%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIA 51
           P ++   G+      L++ +EY   G++ D +R  +                TLS  ++ 
Sbjct: 68  PNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL 127

Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
               D  +G++YL  ++ IHRD                                 L A N
Sbjct: 128 HFAADVARGMDYLSQKQFIHRD---------------------------------LAARN 154

Query: 112 ILLNTEGHAKLADFGVA-GQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGI 169
           IL+     AK+ADFG++ GQ    +  + T+   P  WMA E +    Y   +D+WS G+
Sbjct: 155 ILVGENYVAKIADFGLSRGQ---EVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGV 211

Query: 170 TALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEER 226
              E+   G  PY  +        +  K P  +R  +P     E  D + +C  + P ER
Sbjct: 212 LLWEIVSLGGTPYCGM----TCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYER 267

Query: 227 ATASEML 233
            + +++L
Sbjct: 268 PSFAQIL 274

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 30/159 (18%)

Query: 107 LKAGNILLNTEGHAKLADFGVAGQLTD-TMAKRNTVIGTPFWMAPEVIQEIGYDCVADMW 165
           +K  N+L++     KL DFG A  L++ + A     + T ++ +PE++    Y    DMW
Sbjct: 126 IKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMW 185

Query: 166 SLGITALEMAEGKPPYGDIHPMRAIFMI-----PTKPP--------PSF---REPDVWTP 209
           S+G    E+++G+P +     +  +F I     P            P F   R P V  P
Sbjct: 186 SVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHP 245

Query: 210 E-------------FIDFVSRCLVKNPEERATASEMLNH 235
           +              +D +   L  NP +R    + LNH
Sbjct: 246 QSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNH 284

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 52/224 (23%), Positives = 80/224 (35%), Gaps = 64/224 (28%)

Query: 45  LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTL 104
           L  + +   L   L+GL Y+H R  +HRD                               
Sbjct: 100 LHPENVKLFLFQLLRGLSYIHQRYILHRD------------------------------- 128

Query: 105 FRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEV-IQEIGYDCVAD 163
             LK  N+L++  G  KLADFG+A   +      +  + T ++  P+V +    Y    D
Sbjct: 129 --LKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLD 186

Query: 164 MWSLGITALEMAEGK---PPYGDIH-PMRAIFMIPTKPP----PSFREPDVWTPEFI--- 212
           MW +G   +EM +G    P   DI   +  IF++   P     P       + PE     
Sbjct: 187 MWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLY 246

Query: 213 -------------------DFVSRCLVKNPEERATASEMLNHEF 237
                              D  S+ L   P+ R +A   L+HE+
Sbjct: 247 SPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEY 290

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

 Score = 50.4 bits (120), Expect = 3e-07
 Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 10/128 (7%)

Query: 107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVI-GTPF----WMAPEVIQEIGYDCV 161
           L A N+LL      K+ DFG+A    D M   N V  G+ F    WMAPE I +  Y  +
Sbjct: 263 LAARNVLLAQGKIVKICDFGLA---RDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTL 319

Query: 162 ADMWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLV 220
           +D+WS GI   E+ + G  PY  +  + + F    K      +PD  T E  D + +C  
Sbjct: 320 SDVWSYGILLWEIFSLGGTPYPGMI-VDSTFYNKIKSGYRMAKPDHATQEVYDIMVKCWN 378

Query: 221 KNPEERAT 228
             PE+R +
Sbjct: 379 SEPEKRPS 386

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR alpha signaling is important in the formation of lung alveoli, intestinal villi, mesenchymal dermis, and hair follicles, as well as in the development of oligodendrocytes, retinal astrocytes, neural crest cells, and testicular cells. Aberrant PDGFR alpha expression is associated with some human cancers. Mutations in PDGFR alpha have been found within a subset of gastrointestinal stromal tumors (GISTs). An active fusion protein FIP1L1-PDGFR alpha, derived from interstitial deletion, is associated with idiopathic hypereosinophilic syndrome (HES) and chronic eosinophilic leukemia (CEL). Length = 400

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 38/158 (24%)

Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYIVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 152 --------------------------LKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPY 185

Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           V+ T ++ APEVI  +GY    D+WS+G    EM +G 
Sbjct: 186 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 222

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 36/124 (29%)

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           L+GL Y H R+ +HRD                                 LK  N+L+N  
Sbjct: 114 LRGLNYCHRRKVLHRD---------------------------------LKPQNLLINER 140

Query: 118 GHAKLADFGVA-GQLTDTMAKRNTVIGTPFWMAPEV-IQEIGYDCVADMWSLGITALEMA 175
           G  KLADFG+A  +   T    N V+ T ++  P++ +    Y    DMW +G    EM+
Sbjct: 141 GELKLADFGLARAKSIPTKTYSNEVV-TLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMS 199

Query: 176 EGKP 179
            G+P
Sbjct: 200 TGRP 203

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 48/236 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLK 59
           M++   P +++ Y        ++IV E    GS+ + ++    + L   ++  +      
Sbjct: 55  MKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVAS 114

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ YL  +  IHRD                                 L A N+L+     
Sbjct: 115 GMAYLEAQNYIHRD---------------------------------LAARNVLVGENNI 141

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MA 175
            K+ADFG+A  + + + +     G  F   W APE      +   +D+WS GI   E + 
Sbjct: 142 CKVADFGLARVIKEDIYEARE--GAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVT 199

Query: 176 EGKPPYGDIHPMRAIFMIPTK---PPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
            G+ PY  +     +  +      P P          E  D +  C  ++P++R T
Sbjct: 200 YGRMPYPGMTNAEVLQQVDQGYRMPCPPGCP-----KELYDIMLDCWKEDPDDRPT 250

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 49/212 (23%), Positives = 82/212 (38%), Gaps = 42/212 (19%)

Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSE-DEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++I+ E+   GS+ D ++  + +     ++        +G+ ++  R  IHRD       
Sbjct: 75  IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRD------- 127

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL++     K+ADFG+A  + D       
Sbjct: 128 --------------------------LRAANILVSASLVCKIADFGLARVIEDNEYTARE 161

Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPP 198
               P  W APE I    +   +D+WS GI  +E+   G+ PY  +     I  +     
Sbjct: 162 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALER--- 218

Query: 199 PSFREP--DVWTPEFIDFVSRCLVKNPEERAT 228
             +R P  +    E  + + RC    PEER T
Sbjct: 219 -GYRMPRPENCPEELYNIMMRCWKNRPEERPT 249

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 53/251 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDL------WIVMEYCGAGSV-SDIMRLRKKTLSE----DE 49
           M+  D P V+K  G  F+ + L       +++ +   G + S ++  R   L E      
Sbjct: 55  MKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQT 114

Query: 50  IATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKA 109
           +   + D   G+EYL  R  IHRD                                 L A
Sbjct: 115 LLKFMVDIALGMEYLSNRNFIHRD---------------------------------LAA 141

Query: 110 GNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSL 167
            N +L  +    +ADFG++ ++      R   I   P  W+A E + +  Y   +D+W+ 
Sbjct: 142 RNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAF 201

Query: 168 GITALEMA-EGKPPYGDI--HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE 224
           G+T  E+A  G+ PY  +  H +        +     ++P+    E  D +  C   +P+
Sbjct: 202 GVTMWEIATRGQTPYPGVENHEIYDYLRHGNR----LKQPEDCLDELYDLMYSCWRADPK 257

Query: 225 ERATASEMLNH 235
           +R T +++   
Sbjct: 258 DRPTFTKLREV 268

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 48.6 bits (116), Expect = 7e-07
 Identities = 50/218 (22%), Positives = 79/218 (36%), Gaps = 57/218 (26%)

Query: 23  WIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
           +I+ E    GS+   +R  + + L    +  + C   +G+ YL  +  IHRD        
Sbjct: 78  YIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRD-------- 129

Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-AKRNT 140
                                    L A NIL+  +   K+ADFG+A  + + +    + 
Sbjct: 130 -------------------------LAARNILVGEDLVCKVADFGLARLIKEDVYLSSDK 164

Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAIFMI----- 193
            I  P+ W APE      +   +D+WS GI   EM   G+ PY  ++       I     
Sbjct: 165 KI--PYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITAGYR 222

Query: 194 ---PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              P K P           E    +  C    PE+R +
Sbjct: 223 MPCPAKCP----------QEIYKIMLECWAAEPEDRPS 250

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 40/138 (28%), Positives = 52/138 (37%), Gaps = 34/138 (24%)

Query: 42  KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIY 101
           K+ ++  +I  I    L+ ++YLH  R IHRDIKA                         
Sbjct: 176 KRNIAICDILAIERSVLRAIQYLHENRIIHRDIKAE------------------------ 211

Query: 102 KTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN-TVIGTPFWMAPEVIQEIGYDC 160
                    NI +N  G   L DFG A    D  A +     GT    APE++    Y  
Sbjct: 212 ---------NIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARDPYGP 262

Query: 161 VADMWSLGITALEMAEGK 178
             D+WS GI   EMA   
Sbjct: 263 AVDIWSAGIVLFEMATCH 280

Length = 391

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 50/218 (22%), Positives = 80/218 (36%), Gaps = 54/218 (24%)

Query: 22  LWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++  + + L    +  +      G+ Y+     IHRD       
Sbjct: 75  IYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRD------- 127

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L++ NIL+      K+ADFG+A  + D       
Sbjct: 128 --------------------------LRSANILVGDGLVCKIADFGLARLIEDNEYTARQ 161

Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAIFMI----- 193
               P  W APE      +   +D+WS GI   E+  +G+ PY  ++    +  +     
Sbjct: 162 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYR 221

Query: 194 ---PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              P   P S  E           + +C  K+PEER T
Sbjct: 222 MPCPQDCPISLHE----------LMLQCWKKDPEERPT 249

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 52/245 (21%), Positives = 93/245 (37%), Gaps = 58/245 (23%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIA 51
           P ++   G+      L+I +EY   G++ D +R  +                TL+  ++ 
Sbjct: 63  PNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLL 122

Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
               D   G++YL  ++ IHRD                                 L A N
Sbjct: 123 QFASDVATGMQYLSEKQFIHRD---------------------------------LAARN 149

Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGIT 170
           +L+     +K+ADFG++    + +  + T+   P  WMA E +    Y   +D+WS G+ 
Sbjct: 150 VLVGENLASKIADFGLS--RGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVL 207

Query: 171 ALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERA 227
             E+   G  PY  +        +  K P  +R  +P     E  + + +C    P ER 
Sbjct: 208 LWEIVSLGGTPYCGM----TCAELYEKLPQGYRMEKPRNCDDEVYELMRQCWRDRPYERP 263

Query: 228 TASEM 232
             +++
Sbjct: 264 PFAQI 268

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 55/239 (23%), Positives = 91/239 (38%), Gaps = 58/239 (24%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIA 51
           P ++   G+      L++ +EY   G++ D +R  +                TLS  ++ 
Sbjct: 56  PNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL 115

Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
               D  +G++YL  ++ IHRD                                 L A N
Sbjct: 116 HFAADVARGMDYLSQKQFIHRD---------------------------------LAARN 142

Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGIT 170
           IL+     AK+ADFG++      +  + T+   P  WMA E +    Y   +D+WS G+ 
Sbjct: 143 ILVGENYVAKIADFGLS--RGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVL 200

Query: 171 ALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEER 226
             E+   G  PY  +        +  K P  +R  +P     E  D + +C  + P ER
Sbjct: 201 LWEIVSLGGTPYCGM----TCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYER 255

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 51/218 (23%), Positives = 79/218 (36%), Gaps = 54/218 (24%)

Query: 22  LWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 75  IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 127

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 128 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEYTARQ 161

Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EGKPPYGDIHPMRAIFMI----- 193
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +  +     
Sbjct: 162 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 221

Query: 194 ---PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              P + P S            D + +C  K PEER T
Sbjct: 222 MPCPPECPESLH----------DLMCQCWRKEPEERPT 249

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 49/243 (20%), Positives = 83/243 (34%), Gaps = 55/243 (22%)

Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-------------KKTLSEDEIATILC 55
           +VK+YG   +     +V EY   G ++  +R                  L+  ++  I  
Sbjct: 70  IVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAV 129

Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
               G+ YL  +  +HRD                                 L   N L+ 
Sbjct: 130 QIASGMVYLASQHFVHRD---------------------------------LATRNCLVG 156

Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPF----WMAPEVIQEIGYDCVADMWSLGITA 171
            +   K+ DFG++  +  T   R  V G       WM PE I    +   +D+WS G+  
Sbjct: 157 YDLVVKIGDFGMSRDVYTTDYYR--VGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVL 214

Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   GK P+  +     I  I        + P     E  D +  C  ++P++R    
Sbjct: 215 WEIFTYGKQPWYGLSNEEVIECI--TQGRLLQRPRTCPSEVYDIMLGCWKRDPQQRINIK 272

Query: 231 EML 233
           ++ 
Sbjct: 273 DIH 275

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 55/223 (24%), Positives = 86/223 (38%), Gaps = 48/223 (21%)

Query: 22  LWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV E+ G GS+ D ++    K L   ++  +      G+ Y+     IHRD       
Sbjct: 75  IYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRD------- 127

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 128 --------------------------LRAANILVGDNLVCKIADFGLARLIEDNEYTARQ 161

Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPP 198
               P  W APE      +   +D+WS GI   E+  +G+ PY    P      +  +  
Sbjct: 162 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPY----PGMVNREVLEQVE 217

Query: 199 PSFREP-DVWTPEFI-DFVSRCLVKNPEERATASEMLNHEFIQ 239
             +R P     PE + + +  C  K+P+ER T       E+IQ
Sbjct: 218 RGYRMPCPQGCPESLHELMKLCWKKDPDERPT------FEYIQ 254

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 46.2 bits (109), Expect = 6e-06
 Identities = 58/257 (22%), Positives = 95/257 (36%), Gaps = 77/257 (29%)

Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 96  DVYLVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 144

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 145 --------------------------LKPSNIVVKSDCTLKILDFGLA-RTAGTSFMMTP 177

Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPTKP 197
            + T ++ APEVI  +GY    D+WS+G    EM   K   P    I     +      P
Sbjct: 178 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTP 237

Query: 198 PPSFRE-------------------------PDVWTP-----------EFIDFVSRCLVK 221
            P F +                         PD   P           +  D +S+ LV 
Sbjct: 238 CPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVI 297

Query: 222 NPEERATASEMLNHEFI 238
           +P +R +  E L H +I
Sbjct: 298 DPAKRISVDEALQHPYI 314

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 27/108 (25%), Positives = 47/108 (43%)

Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPS 200
           ++GTP ++APE++    +    D W+LG+   E   G PP+ D  P +    I  +  P 
Sbjct: 540 ILGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQVFQNILNRDIPW 599

Query: 201 FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQN 248
               +  +    + +   L  +P +RA   E+  H      D +  QN
Sbjct: 600 PEGEEKLSVNAQNAIEILLTMDPTKRAGLKELKQHPLFHGVDWENLQN 647

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 147 WMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHP--MRAIFMIPTKPPPSFRE 203
           WMA E +    Y   +D+WS G+   E+   G+ PY +I P  M A      +       
Sbjct: 185 WMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKDGYRLAQPINC 244

Query: 204 PDVWTPEFIDFVSRCLVKNPEERATASEMLN--HEF 237
           PD    E    ++ C   +PEER + S+++    +F
Sbjct: 245 PD----ELFAVMACCWALDPEERPSFSQLVQCLTDF 276

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 44/195 (22%), Positives = 77/195 (39%), Gaps = 47/195 (24%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLW------IVMEYCGAGSVSDIM---RL--RKKTLSEDE 49
           M++ D P V++  G   +  +        +++ +   G +   +   RL    + L    
Sbjct: 54  MKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQM 113

Query: 50  IATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKA 109
           +   + D   G+EYL  +  IHRD                                 L A
Sbjct: 114 LVKFMTDIASGMEYLSSKSFIHRD---------------------------------LAA 140

Query: 110 GNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSL 167
            N +LN   +  +ADFG++ ++ +    R   I   P  W+A E + +  Y   +D+WS 
Sbjct: 141 RNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSF 200

Query: 168 GITALEMA-EGKPPY 181
           G+T  E+A  G+ PY
Sbjct: 201 GVTMWEIATRGQTPY 215

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 57/266 (21%), Positives = 92/266 (34%), Gaps = 65/266 (24%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR--------------------- 39
           M + D P +VK  G       + ++ EY   G +++ +R                     
Sbjct: 62  MAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCG 121

Query: 40  LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQ 99
           L    LS  E   I      G+ YL  R+ +HRD                          
Sbjct: 122 LNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRD-------------------------- 155

Query: 100 IYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNTVIGTPF-WMAPEVIQE 155
                  L   N L+      K+ADFG++  +       A  N  I  P  WM PE I  
Sbjct: 156 -------LATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAI--PIRWMPPESIFY 206

Query: 156 IGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDF 214
             Y   +D+W+ G+   E+ + G  PY  +     I+ +  +       PD    E  + 
Sbjct: 207 NRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYYV--RDGNVLSCPDNCPLELYNL 264

Query: 215 VSRCLVKNPEERATASEMLNHEFIQR 240
           +  C  K P +R + + +  +  +QR
Sbjct: 265 MRLCWSKLPSDRPSFASI--NRILQR 288

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 40/158 (25%), Positives = 55/158 (34%), Gaps = 41/158 (25%)

Query: 41  RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQI 100
           R   L  ++  TI    L+ L YLH R  IHRD+K                         
Sbjct: 178 RSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTE----------------------- 214

Query: 101 YKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTV--IGTPFWMAPEVIQEIGY 158
                     NI L+   +A L DFG A +L             GT    +PE++    Y
Sbjct: 215 ----------NIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPY 264

Query: 159 DCVADMWSLGITALEMAE------GKPPYGDIHPMRAI 190
               D+WS G+   EM+       GK        +R+I
Sbjct: 265 CAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSI 302

Length = 392

>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 17/134 (12%)

Query: 109 AGNILL-------NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDC 160
           A NILL        T    KL+D GV+      +++   V   P W+APE +        
Sbjct: 145 AKNILLARLGLAEGTSPFIKLSDPGVS---FTALSREERVERIP-WIAPECVPGGNSLST 200

Query: 161 VADMWSLGITALEMA-EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCL 219
            AD WS G T LE+  +G+ P  +  P         K     R P+    E    +S+CL
Sbjct: 201 AADKWSFGTTLLEICFDGEVPLKERTPSEKERFYEKK----HRLPEPSCKELATLISQCL 256

Query: 220 VKNPEERATASEML 233
              P +R +   +L
Sbjct: 257 TYEPTQRPSFRTIL 270

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 274

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 57/253 (22%), Positives = 98/253 (38%), Gaps = 61/253 (24%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL----CDTLKGLE 62
           P V++  G   ++    +V+E+C  G + + +R  +  +++     +L    C+   GL 
Sbjct: 55  PNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLL 114

Query: 63  YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKL 122
           +LH    IH D                                 L   N  L  +   K+
Sbjct: 115 WLHQADFIHSD---------------------------------LALRNCQLTADLSVKI 141

Query: 123 ADFGVA-GQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCV-------ADMWSLGITALE 173
            D+G+A  Q  +           P  W+APE+++  G D +       +++WSLG+T  E
Sbjct: 142 GDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWE 201

Query: 174 MAE-GKPPYGDIHPMRAIFMI----PTK-PPPSFREP--DVWTPEFIDFVSRCLVKNPEE 225
           +      PY D+   + +  +      K P P       D W  E + F   C + +PE 
Sbjct: 202 LFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWY-EVMQF---CWL-DPET 256

Query: 226 RATASEMLNHEFI 238
           R TA E+  HE +
Sbjct: 257 RPTAEEV--HELL 267

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 50/131 (38%)

Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL--------RKKTLSEDEIATILCDT 57
           SP++V  Y S     ++++VMEY   G V  ++ +          K +SE  +A      
Sbjct: 63  SPFIVHLYYSLQSANNVYLVMEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALA------ 116

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
              L+YLH    IHRD                                 LK  N+L++ E
Sbjct: 117 ---LDYLHRHGIIHRD---------------------------------LKPDNMLISNE 140

Query: 118 GHAKLADFGVA 128
           GH KL DFG++
Sbjct: 141 GHIKLTDFGLS 151

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 55/251 (21%), Positives = 96/251 (38%), Gaps = 50/251 (19%)

Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSE--------DEIATILCDTL 58
           +VV+  G   K     +VME    G +   +R LR +  +          E+  +  +  
Sbjct: 70  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 129

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+ YL+ ++ +HRD                                 L A N ++  + 
Sbjct: 130 DGMAYLNAKKFVHRD---------------------------------LAARNCMVAHDF 156

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITALEMAE 176
             K+ DFG+   + +T   R    G  P  WMAPE +++  +   +DMWS G+   E+  
Sbjct: 157 TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 216

Query: 177 -GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
             + PY  +   + +  +         +PD       D +  C   NP+ R T  E++N 
Sbjct: 217 LAEQPYQGLSNEQVLKFV--MDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVN- 273

Query: 236 EFIQRHDTDPS 246
             + + D  PS
Sbjct: 274 --LLKDDLHPS 282

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 34/123 (27%)

Query: 53  ILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
           I+   L  +EY+H ++ IHRDIK                                   NI
Sbjct: 272 IMKQLLCAVEYIHDKKLIHRDIKLE---------------------------------NI 298

Query: 113 LLNTEGHAKLADFGVAGQLTDTMAKRN-TVIGTPFWMAPEVIQEIGYDCVADMWSLGITA 171
            LN +G   L DFG A          +   +GT    +PE++   GY  + D+WS G+  
Sbjct: 299 FLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLIL 358

Query: 172 LEM 174
           L+M
Sbjct: 359 LDM 361

Length = 501

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 45/245 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ ++   +  +      
Sbjct: 56  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 115

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 116 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 142

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 143 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 202

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEM--- 232
             PY    P   +  +       +R   P+   P+  + +  C   NP +R + +E+   
Sbjct: 203 MSPY----PGIDLSQVYELLEKGYRMERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQA 258

Query: 233 LNHEF 237
               F
Sbjct: 259 FETMF 263

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 56/245 (22%), Positives = 88/245 (35%), Gaps = 57/245 (23%)

Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---------------KKTLSEDEIAT 52
           ++VK+YG       L +V EY   G ++  +R                 K  L   ++  
Sbjct: 68  HIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLH 127

Query: 53  ILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
           I      G+ YL  +  +HRD+ A    LV                           G  
Sbjct: 128 IASQIASGMVYLASQHFVHRDL-ATRNCLV---------------------------GAN 159

Query: 113 LLNTEGHAKLADFGVAGQLTDTMAKR---NTVIGTPF-WMAPEVIQEIGYDCVADMWSLG 168
           LL      K+ DFG++  +  T   R   +T++  P  WM PE I    +   +D+WS G
Sbjct: 160 LL-----VKIGDFGMSRDVYSTDYYRVGGHTML--PIRWMPPESIMYRKFTTESDVWSFG 212

Query: 169 ITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA 227
           +   E+   GK P+  +     I  I          P V   E  D +  C  + P++R 
Sbjct: 213 VILWEIFTYGKQPWFQLSNTEVIECITQG--RVLERPRVCPKEVYDIMLGCWQREPQQRL 270

Query: 228 TASEM 232
              E+
Sbjct: 271 NIKEI 275

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 107 LKAGNILLNTEG---HAKLADFGVAGQLTD-------TMAKRNTVIGTPFWMAPEVIQEI 156
           LK  NI+++  G   HAK+ DFG+   L         T+ +   V+GTP + APE ++  
Sbjct: 105 LKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVRDADVATLTRTTEVLGTPTYCAPEQLRGE 164

Query: 157 GYDCVADMWSLGITALEMAEGKP 179
                +D+++ G+  LE   G+ 
Sbjct: 165 PVTPNSDLYAWGLIFLECLTGQR 187

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 46/190 (24%)

Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
           TL    +   + D   G+EYL  +  IHRD                              
Sbjct: 109 TLPLQTLVRFMIDIASGMEYLSSKNFIHRD------------------------------ 138

Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCV 161
              L A N +LN      +ADFG++ ++ +    ++      P  W+A E + +  Y   
Sbjct: 139 ---LAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTH 195

Query: 162 ADMWSLGITALE-MAEGKPPYGDIHPMRAI-FMIP---TKPPPSFREPDVWTPEFIDFVS 216
           +D+W+ G+T  E M  G+ PY  +       ++I     K PP   E      +  + + 
Sbjct: 196 SDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKGNRLKQPPDCLE------DVYELMC 249

Query: 217 RCLVKNPEER 226
           +C    P+ R
Sbjct: 250 QCWSPEPKCR 259

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 56/231 (24%), Positives = 86/231 (37%), Gaps = 61/231 (26%)

Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATIL----CDTLKGLEYLHLRRKIHRDIKAGSG 79
           +VME+C  G +   +R  +K        T L    C+   GL +LH    IH D      
Sbjct: 72  LVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSD------ 125

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA--GQLTDTMAK 137
                                      L   N LL  +   K+ D+G++      D    
Sbjct: 126 ---------------------------LALRNCLLTADLTVKIGDYGLSHNKYKEDYYVT 158

Query: 138 RNTVIGTPFWMAPEVIQEI-GYDCVAD------MWSLGITALEMAE-GKPPYGDIHPMRA 189
            + +     W+APE++ E+ G   V D      +WSLG+T  E+ E G  PY        
Sbjct: 159 PDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRH-LSDEQ 217

Query: 190 IFMIPTK------PPPSFREP--DVWTPEFIDFVSRCLVKNPEERATASEM 232
           +     +      P P  + P  D W  E + F   C ++ PE+R +A E+
Sbjct: 218 VLTYTVREQQLKLPKPRLKLPLSDRWY-EVMQF---CWLQ-PEQRPSAEEV 263

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 33/161 (20%)

Query: 107 LKAGNILLNTEGHA-KLADFGVAGQLTDTMAKRNTV--IGTPFWMAPEV-IQEIGYDCVA 162
           LK  N+L++   H  KL DFG A  L   +A + +V  I + F+ APE+ +    Y    
Sbjct: 196 LKPQNLLIDPNTHTLKLCDFGSAKNL---LAGQRSVSYICSRFYRAPELMLGATNYTTHI 252

Query: 163 DMWSLGITALEMAEGKPPYG------------------------DIHPMRAIFMIPTKPP 198
           D+WSLG    EM  G P +                         +++P  A    P   P
Sbjct: 253 DLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKP 312

Query: 199 PSFRE--PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
              ++  P     + I+F+S+ L   P +R    E L   F
Sbjct: 313 KDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPF 353

Length = 440

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 57/255 (22%), Positives = 87/255 (34%), Gaps = 78/255 (30%)

Query: 21  DLWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS 78
           D+++V E       SD+ ++ K    L+ +     L   L+ L+Y+H     HRD     
Sbjct: 78  DIYVVFELME----SDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTANVFHRD----- 128

Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTM 135
                                       LK  NIL N +   K+ DFG   VA   T T 
Sbjct: 129 ----------------------------LKPKNILANADCKLKICDFGLARVAFNDTPTA 160

Query: 136 AKRNTVIGTPFWMAPEVIQEI--GYDCVADMWSLGITALEMAEGKPPY---GDIHPMRAI 190
                 + T ++ APE+       Y    D+WS+G    E+  GKP +     +H +  I
Sbjct: 161 IFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLI 220

Query: 191 FMIPTKPPP----------------------------SFREPDVWTPEFIDFVSRCLVKN 222
             +   P P                             F   D   P  +  + R L  +
Sbjct: 221 TDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNAD---PLALRLLERLLAFD 277

Query: 223 PEERATASEMLNHEF 237
           P++R TA E L   +
Sbjct: 278 PKDRPTAEEALADPY 292

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 39.6 bits (92), Expect = 9e-04
 Identities = 47/246 (19%), Positives = 94/246 (38%), Gaps = 47/246 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIA-------- 51
           M++ +  +VV+  G   +     ++ME    G +   +R LR +  +    A        
Sbjct: 63  MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMI 122

Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
            +  +   G+ YL+  + +HRD                                 L A N
Sbjct: 123 QMAGEIADGMAYLNANKFVHRD---------------------------------LAARN 149

Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGI 169
            ++  +   K+ DFG+   + +T   R    G  P  WM+PE +++  +   +D+WS G+
Sbjct: 150 CMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGV 209

Query: 170 TALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              E+A   + PY  +   + +  +         +PD       + +  C   NP+ R +
Sbjct: 210 VLWEIATLAEQPYQGMSNEQVLRFV--MEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPS 267

Query: 229 ASEMLN 234
             E+++
Sbjct: 268 FLEIIS 273

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 52/191 (27%)

Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR------------KKTLSEDEIATILC 55
           ++VK+YG   +   L +V EY   G ++  +R                 L++ ++  I  
Sbjct: 68  HIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQ 127

Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
               G+ YL  +  +HRD                                 L   N L+ 
Sbjct: 128 QIAAGMVYLASQHFVHRD---------------------------------LATRNCLVG 154

Query: 116 TEGHAKLADFGVAGQLTDTMAKR---NTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITA 171
                K+ DFG++  +  T   R   +T++  P  WM PE I    +   +D+WSLG+  
Sbjct: 155 ENLLVKIGDFGMSRDVYSTDYYRVGGHTML--PIRWMPPESIMYRKFTTESDVWSLGVVL 212

Query: 172 LEM-AEGKPPY 181
            E+   GK P+
Sbjct: 213 WEIFTYGKQPW 223

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 47/191 (24%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---------------KKTLSEDEIA 51
           P +V   G   K   L ++  YC    + + + +R               K TL   +  
Sbjct: 68  PNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFV 127

Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
            I+     G+E+L     +H+D+ A    LV+D+L+   I    +  ++Y   +    GN
Sbjct: 128 HIVTQIAAGMEFLSSHHVVHKDL-ATRNVLVFDKLN-VKISDLGLFREVYAADYYKLMGN 185

Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITA 171
            LL                                WM+PE I    +   +D+WS G+  
Sbjct: 186 SLLPIR-----------------------------WMSPEAIMYGKFSIDSDIWSYGVVL 216

Query: 172 LEM-AEGKPPY 181
            E+ + G  PY
Sbjct: 217 WEVFSYGLQPY 227

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKR---NTVIGTPF-WMAPEVIQEIGYDCVA 162
           L A NIL+  + H K++D G++ ++      R    +++  P  WM PE I    +   +
Sbjct: 150 LAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLL--PIRWMPPEAIMYGKFSSDS 207

Query: 163 DMWSLGITALEM-AEGKPPY 181
           D+WS G+   E+ + G  PY
Sbjct: 208 DIWSFGVVLWEIFSFGLQPY 227

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 53/222 (23%), Positives = 84/222 (37%), Gaps = 45/222 (20%)

Query: 33  SVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIH---RDIK--AGSGTLVYDRLD 87
            V +++ L K  +SED +  +L     G  + H+ + ++     +K  A    +  D L 
Sbjct: 43  CVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISKFLNIPEECVKRWAAEMVVALDALH 102

Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFW 147
              I C             L   NILL+  GH +L  F    ++ D+      V     +
Sbjct: 103 REGIVCR-----------DLNPNNILLDDRGHIQLTYFSRWSEVEDS-CDGEAV--ENMY 148

Query: 148 MAPEV--IQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPD 205
            APEV  I E    C  D WSLG    E+  GK             ++   P        
Sbjct: 149 CAPEVGGISEETEAC--DWWSLGAILFELLTGKT------------LVECHPSGINTHTT 194

Query: 206 VWTPEFIDFVSRCLVK-----NPEER-----ATASEMLNHEF 237
           +  PE++   +R L++     NP ER     A   ++ +H F
Sbjct: 195 LNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPF 236

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 38.0 bits (88), Expect = 0.002
 Identities = 54/252 (21%), Positives = 85/252 (33%), Gaps = 58/252 (23%)

Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIAT-----------I 53
           ++V++YG   +   L +V EY   G ++  +R      K L+  E              I
Sbjct: 68  HIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAI 127

Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                 G+ YL     +HRD                                 L   N L
Sbjct: 128 ASQIASGMVYLASLHFVHRD---------------------------------LATRNCL 154

Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPF----WMAPEVIQEIGYDCVADMWSLGI 169
           +      K+ DFG++  +  T   R  V G       WM PE I    +   +D+WS G+
Sbjct: 155 VGQGLVVKIGDFGMSRDIYSTDYYR--VGGRTMLPIRWMPPESILYRKFTTESDIWSFGV 212

Query: 170 TALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              E+   GK P+  +    AI  I          P    PE    +  C  + P++R  
Sbjct: 213 VLWEIFTYGKQPWYQLSNTEAIECITQG--RELERPRTCPPEVYAIMQGCWQREPQQRMV 270

Query: 229 ASEMLNHEFIQR 240
             ++  H  +Q 
Sbjct: 271 IKDI--HSRLQA 280

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
KOG0615|consensus	475		100.0
KOG0581|consensus	364		100.0
KOG0575|consensus	592		100.0
KOG0578|consensus	550		100.0
KOG0592|consensus	604		100.0
KOG0598|consensus	357		100.0
KOG0583|consensus	370		100.0
KOG0595|consensus	429		100.0
KOG0588|consensus	786		100.0
KOG0198|consensus	313		100.0
KOG0661|consensus	538		100.0
KOG0582|consensus	516		100.0
KOG0033|consensus	355		100.0
KOG0616|consensus	355		100.0
KOG0593|consensus	396		100.0
KOG0574|consensus	502		100.0
KOG0192|consensus	362		100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
KOG0591|consensus	375		100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
KOG0197|consensus	468		100.0
KOG0605|consensus	550		100.0
KOG0599|consensus	411		100.0
KOG0694|consensus	694		100.0
KOG0201|consensus	467		100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
KOG0659|consensus	318		100.0
KOG0597|consensus	808		100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
KOG0600|consensus	560		100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
KOG4717|consensus	864		100.0
KOG0589|consensus	426		100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
KOG0610|consensus	459		100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
KOG0579|consensus	1187		100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
KOG0663|consensus	419		100.0
KOG0660|consensus	359		100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	100.0
PTZ00267	478	NIMA-related protein kinase; Provisional	100.0
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	100.0
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
KOG0604|consensus	400		100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
KOG0032|consensus	382		100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
KOG0611|consensus	668		100.0
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	100.0
KOG0580|consensus	281		100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
KOG0594|consensus	323		100.0
KOG4721|consensus	904		100.0
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
KOG0585|consensus	576		100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	100.0
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	100.0
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	100.0
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	100.0
PHA03207	392	serine/threonine kinase US3; Provisional	100.0
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	100.0
KOG1026|consensus	774		100.0
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	100.0
KOG0658|consensus	364		100.0
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	100.0
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	100.0
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	100.0
PHA02988	283	hypothetical protein; Provisional	100.0
PHA03209	357	serine/threonine kinase US3; Provisional	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	100.0
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	100.0
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	100.0
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	100.0
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	100.0
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	100.0
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	100.0
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	100.0
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	100.0
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	100.0
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	100.0
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	100.0
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	100.0
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	100.0
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	100.0
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	100.0
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	100.0
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	100.0
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	100.0
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	100.0
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	100.0
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	100.0
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	100.0
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	100.0
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	100.0
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	100.0
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	100.0
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	100.0
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
KOG0667|consensus	586		100.0
KOG0690|consensus	516		100.0
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	100.0
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	100.0
PHA03211	461	serine/threonine kinase US3; Provisional	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
KOG0577|consensus	948		100.0
PTZ00283	496	serine/threonine protein kinase; Provisional	100.0
KOG1095|consensus	1025		100.0
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	100.0
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	100.0
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	100.0
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	100.0
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	100.0
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	100.0
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	100.0
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	100.0
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	100.0
KOG0596|consensus	677		100.0
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	100.0
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	100.0
KOG0194|consensus	474		100.0
PTZ00284	467	protein kinase; Provisional	100.0
KOG4279|consensus	1226		100.0
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	100.0
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	100.0
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	100.0
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	100.0
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	100.0
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	100.0
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	100.0
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	100.0
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	100.0
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	100.0
KOG0584|consensus	632		100.0
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	100.0
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	100.0
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	100.0
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	100.0
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	100.0
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	100.0
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	100.0
KOG0983|consensus	391		100.0
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	100.0
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	100.0
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	100.0
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	100.0
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	100.0
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	100.0
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	100.0
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	100.0
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	100.0
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	100.0
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	100.0
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	100.0
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	100.0
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	100.0
KOG0671|consensus	415		100.0
PTZ00266	1021	NIMA-related protein kinase; Provisional	100.0
KOG0986|consensus	591		100.0
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	100.0
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	100.0
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	100.0
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	100.0
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	100.0
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	100.0
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	100.0
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	100.0
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	100.0
PLN00009	294	cyclin-dependent kinase A; Provisional	100.0
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	100.0
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	100.0
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	100.0
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	100.0
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	100.0
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	100.0
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	100.0
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	100.0
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	100.0
KOG0603|consensus	612		100.0
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	100.0
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	100.0
PHA03210	501	serine/threonine kinase US3; Provisional	100.0
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	100.0
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	100.0
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	100.0
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	100.0
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	100.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	100.0
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	100.0
KOG0196|consensus	996		100.0
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	100.0
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	100.0
KOG4257|consensus	974		100.0
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	100.0
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	100.0
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	100.0
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	100.0
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	100.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	100.0
PTZ00024	335	cyclin-dependent protein kinase; Provisional	100.0
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	100.0
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	100.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	100.0
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	100.0
KOG0696|consensus	683		100.0
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	100.0
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	100.0
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	100.0
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	100.0
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	100.0
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	100.0
KOG1989|consensus	738		100.0
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	100.0
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	100.0
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	100.0
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	100.0
KOG0614|consensus	732		100.0
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	100.0
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	100.0
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	100.0
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	100.0
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	100.0
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	100.0
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	100.0
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	100.0
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	100.0
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	100.0
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	100.0
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	100.0
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	100.0
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	100.0
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	100.0
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	100.0
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	100.0
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	100.0
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	100.0
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	100.0
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	100.0
KOG0612|consensus	1317		100.0
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	100.0
KOG0586|consensus	596		100.0
KOG0587|consensus	953		100.0
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	100.0
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	100.0
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	100.0
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	100.0
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	100.0
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	100.0
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	100.0
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	100.0
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	100.0
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	100.0
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	100.0
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	100.0
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	100.0
KOG2345|consensus	302		100.0
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	100.0
KOG4645|consensus	1509		100.0
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	100.0
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	100.0
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	100.0
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	100.0
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	100.0
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	100.0
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	100.0
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	100.0
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	100.0
KOG0193|consensus	678		100.0
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	100.0
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	100.0
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	100.0
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	100.0
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	100.0
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	100.0
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	100.0
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	100.0
KOG0666|consensus	438		100.0
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	100.0
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	100.0
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	100.0
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	100.0
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	100.0
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	100.0
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	100.0
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	100.0
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	100.0
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	100.0
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	100.0
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	100.0
KOG0607|consensus	463		100.0
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	100.0
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	100.0
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	100.0
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	100.0
KOG1187|consensus	361		100.0
KOG4278|consensus	1157		100.0
KOG0662|consensus	292		100.0
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	100.0
KOG0665|consensus	369		100.0
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	100.0
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	100.0
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	100.0
KOG1094|consensus	807		100.0
KOG0669|consensus	376		100.0
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	100.0
KOG0199|consensus	1039		100.0
KOG4236|consensus	888		100.0
PHA02882	294	putative serine/threonine kinase; Provisional	100.0
KOG0608|consensus	1034		100.0
KOG0695|consensus	593		100.0
KOG1027|consensus	903		100.0
KOG1006|consensus	361		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG1151|consensus	775		100.0
KOG1290|consensus	590		99.98
KOG0200|consensus	609		99.98
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.97
KOG0670|consensus	752		99.97
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.97
KOG0576|consensus	829		99.97
KOG4250|consensus	732		99.97
KOG1025|consensus	1177		99.97
KOG0668|consensus	338		99.97
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.96
KOG1035|consensus	1351		99.96
KOG1024|consensus	563		99.96
KOG0984|consensus	282		99.96
KOG0664|consensus	449		99.95
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.95
KOG0590|consensus	601		99.94
KOG3653|consensus	534		99.94
KOG2052|consensus	513		99.94
KOG1152|consensus	772		99.94
KOG1167|consensus	418		99.93
KOG1345|consensus	378		99.91
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.91
KOG0603|consensus	612		99.88
KOG0195|consensus	448		99.87
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.86
KOG4158|consensus	598		99.86
KOG1023|consensus	484		99.86
KOG1164|consensus	322		99.83
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.8
KOG1240|consensus	1431		99.79
KOG1033|consensus	516		99.78
KOG0606|consensus	1205		99.78
KOG1165|consensus	449		99.76
KOG1163|consensus	341		99.72
KOG0590|consensus	601		99.7
PRK09188	365	serine/threonine protein kinase; Provisional	99.68
PRK12274	218	serine/threonine protein kinase; Provisional	99.66
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.63
KOG1266|consensus	458		99.6
KOG0606|consensus	1205		99.59
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.58
KOG1166|consensus	974		99.56
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.55
PRK10345	210	hypothetical protein; Provisional	99.54
KOG0601|consensus	524		99.44
KOG1243|consensus	690		99.42
PRK14879	211	serine/threonine protein kinase; Provisional	99.41
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.39
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.35
smart00090	237	RIO RIO-like kinase.	99.33
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.33
KOG2137|consensus	700		99.26
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.17
KOG0601|consensus	524		99.02
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.0
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.97
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.85
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.83
KOG3741|consensus	655		98.76
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.73
COG4248	637	Uncharacterized protein with protein kinase and he	98.7
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.66
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	98.62
KOG3087|consensus	229		98.6
KOG0576|consensus	829		98.53
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.52
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.47
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.45
KOG1035|consensus	1351		98.41
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.16
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	97.97
PRK09902	216	hypothetical protein; Provisional	97.88
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.7
KOG1235|consensus	538		97.59
KOG1826|consensus	2724		97.56
KOG1093|consensus	725		97.42
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	97.39
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	97.37
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.34
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	96.59
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	96.39
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	96.29
KOG2268|consensus	465		94.86
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	92.97
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	92.43
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	91.27
KOG1236|consensus	565		91.19
PRK05231	319	homoserine kinase; Provisional	90.64
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	90.53
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	90.01
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	89.83
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	89.42
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	88.26
PHA03111	444	Ser/Thr kinase; Provisional	87.65
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	87.4
PRK10271	188	thiK thiamine kinase; Provisional	85.83
PF01636	239	APH: Phosphotransferase enzyme family This family	85.69
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	85.56
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	84.83
COG2334	331	Putative homoserine kinase type II (protein kinase	83.74
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	82.66
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	82.65
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	81.92
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	81.86
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	81.84
KOG2270|consensus	520		81.45

>KOG0615|consensus

Probab=100.00  E-value=4.5e-51  Score=339.79  Aligned_cols=207  Identities=30%  Similarity=0.432  Sum_probs=176.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++|+|||||+++++|...+..||||||++||+|.+++- .++.+.+...+.+++|++.|++|||++||+|||||     
T Consensus       230 LkkL~HP~IV~~~d~f~~~ds~YmVlE~v~GGeLfd~vv-~nk~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiK-----  303 (475)
T KOG0615|consen  230 LKKLSHPNIVRIKDFFEVPDSSYMVLEYVEGGELFDKVV-ANKYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIK-----  303 (475)
T ss_pred             HHhcCCCCEEEEeeeeecCCceEEEEEEecCccHHHHHH-hccccccchhHHHHHHHHHHHHHHHHcCcccccCC-----
Confidence            678999999999999999999999999999999999996 66889999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCC---CCeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE---GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~---~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||++..+   ..+||+|||+|+..+. .....+..||+.|.|||++.+..
T Consensus       304 ----------------------------PeNILl~~~~e~~llKItDFGlAK~~g~-~sfm~TlCGTpsYvAPEVl~~kg  354 (475)
T KOG0615|consen  304 ----------------------------PENILLSNDAEDCLLKITDFGLAKVSGE-GSFMKTLCGTPSYVAPEVLASKG  354 (475)
T ss_pred             ----------------------------cceEEeccCCcceEEEecccchhhcccc-ceehhhhcCCccccChhheecCC
Confidence                                        555555444   5699999999987763 34566788999999999997654


Q ss_pred             --CCc-chhHHHHHHHHHHHHhCCCCCCCCCcch-hhhhcCCCCCCCC-CCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         158 --YDC-VADMWSLGITALEMAEGKPPYGDIHPMR-AIFMIPTKPPPSF-REPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       158 --~~~-~~DvwslG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                        +++ ++|+||+||++|-+++|.+||.+..... ....+..+.-... ..+..++.+..+||.+||..||++|||++|+
T Consensus       355 ~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~ea  434 (475)
T KOG0615|consen  355 VEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEA  434 (475)
T ss_pred             eecccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHH
Confidence              333 7899999999999999999997665544 5555655533222 3467789999999999999999999999999


Q ss_pred             hcChhhhhcc
Q psy3253         233 LNHEFIQRHD  242 (251)
Q Consensus       233 l~hp~~~~~~  242 (251)
                      |+||||+..+
T Consensus       435 L~hpW~~~~~  444 (475)
T KOG0615|consen  435 LNHPWFKDAP  444 (475)
T ss_pred             hcChhhhccc
Confidence            9999999655

>KOG0581|consensus

Probab=100.00  E-value=1e-49  Score=328.56  Aligned_cols=206  Identities=41%  Similarity=0.820  Sum_probs=183.1

Q ss_pred             CCCCCCCccceeeeeEeeCCe-EEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTD-LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~-~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~N   78 (251)
                      |++++|||||.+||+|..... ++++||||++|||..++. .-+.++|.....++.+++.||.|||+ .+|||||||   
T Consensus       131 l~~~~spyIV~~ygaF~~~~~~isI~mEYMDgGSLd~~~k-~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIK---  206 (364)
T KOG0581|consen  131 LRSCQSPYIVGFYGAFYSNGEEISICMEYMDGGSLDDILK-RVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIK---  206 (364)
T ss_pred             HhhCCCCCeeeEeEEEEeCCceEEeehhhcCCCCHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCC---
Confidence            357899999999999999884 999999999999999987 44789999999999999999999995 899999999   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                    |+|++++..|.+||+|||.++...+.  ...+..||..|||||.+.+..|
T Consensus       207 ------------------------------PsNlLvNskGeVKicDFGVS~~lvnS--~a~tfvGT~~YMsPERi~g~~Y  254 (364)
T KOG0581|consen  207 ------------------------------PSNLLVNSKGEVKICDFGVSGILVNS--IANTFVGTSAYMSPERISGESY  254 (364)
T ss_pred             ------------------------------HHHeeeccCCCEEeccccccHHhhhh--hcccccccccccChhhhcCCcC
Confidence                                          99999999999999999999876554  5567889999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCC-----CcchhhhhcCCCCCCCCCCCC-CCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDI-----HPMRAIFMIPTKPPPSFREPD-VWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      +.++||||||+.++|+.+|++||...     +..+....+...+++.+  |. .+++++++|+..||++||.+|||++|+
T Consensus       255 s~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~Iv~~ppP~l--P~~~fS~ef~~FV~~CL~Kdp~~R~s~~qL  332 (364)
T KOG0581|consen  255 SVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAIVDEPPPRL--PEGEFSPEFRSFVSCCLRKDPSERPSAKQL  332 (364)
T ss_pred             CcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHHhcCCCCCC--CcccCCHHHHHHHHHHhcCCcccCCCHHHH
Confidence            99999999999999999999999653     44455556666666665  44 499999999999999999999999999


Q ss_pred             hcChhhhhccCC
Q psy3253         233 LNHEFIQRHDTD  244 (251)
Q Consensus       233 l~hp~~~~~~~~  244 (251)
                      ++|||+++....
T Consensus       333 l~Hpfi~~~~~~  344 (364)
T KOG0581|consen  333 LQHPFIKKFEDP  344 (364)
T ss_pred             hcCHHHhhcccc
Confidence            999999976543

>KOG0575|consensus

Probab=100.00  E-value=4.5e-49  Score=341.81  Aligned_cols=207  Identities=32%  Similarity=0.597  Sum_probs=190.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++|+|||||+++++|++..++|+|+|+|..++|.++++ ++..++|.+++.++.||+.||+|||+.+|+|||||      
T Consensus        73 r~L~HpnIV~f~~~FEDs~nVYivLELC~~~sL~el~K-rrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLK------  145 (592)
T KOG0575|consen   73 RSLKHPNIVQFYHFFEDSNNVYIVLELCHRGSLMELLK-RRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLK------  145 (592)
T ss_pred             HhcCCCcEEeeeeEeecCCceEEEEEecCCccHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHhcCceecccc------
Confidence            47899999999999999999999999999999999997 78899999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 -.|++++.+.++||+|||+|.....+..+..+..|||.|.|||++.+...+..
T Consensus       146 ---------------------------LGNlfL~~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfE  198 (592)
T KOG0575|consen  146 ---------------------------LGNLFLNENMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSFE  198 (592)
T ss_pred             ---------------------------hhheeecCcCcEEecccceeeeecCcccccceecCCCcccChhHhccCCCCCc
Confidence                                       77999999999999999999988777678888999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +||||+||++|-|+.|+|||...+..+....+...   .+..|..++.+..+||.+||+.||.+|||+++||.|+||...
T Consensus       199 vDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~---~Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff~~g  275 (592)
T KOG0575|consen  199 VDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLN---EYSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLDHPFFKSG  275 (592)
T ss_pred             hhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhc---CcccccccCHHHHHHHHHHhcCCcccCCCHHHHhcCHhhhCC
Confidence            99999999999999999999988777777666655   455677899999999999999999999999999999999665


Q ss_pred             cCCC
Q psy3253         242 DTDP  245 (251)
Q Consensus       242 ~~~~  245 (251)
                      ..+.
T Consensus       276 ~~p~  279 (592)
T KOG0575|consen  276 FTPA  279 (592)
T ss_pred             CcCC
Confidence            5443

>KOG0578|consensus

Probab=100.00  E-value=4.8e-48  Score=332.93  Aligned_cols=206  Identities=45%  Similarity=0.884  Sum_probs=196.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+..+|||||++++.|.-++.++.||||++||+|.+.+.  ...++|.++..++++++.||+|||.+||+|||||     
T Consensus       324 m~~~~H~NiVnfl~Sylv~deLWVVMEym~ggsLTDvVt--~~~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIK-----  396 (550)
T KOG0578|consen  324 MRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGSLTDVVT--KTRMTEGQIAAICREILQGLKFLHARGIIHRDIK-----  396 (550)
T ss_pred             HHhccchHHHHHHHHhcccceeEEEEeecCCCchhhhhh--cccccHHHHHHHHHHHHHHHHHHHhcceeeeccc-----
Confidence            567899999999999999999999999999999999986  4569999999999999999999999999999998     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  .+||+++.+|.+||+|||+|.++.....+.....||+.|||||+.....|.+
T Consensus       397 ----------------------------SDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~  448 (550)
T KOG0578|consen  397 ----------------------------SDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKPYGP  448 (550)
T ss_pred             ----------------------------cceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccchhhhhhcccCc
Confidence                                        8999999999999999999999988877888899999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++||||||++++||+.|++||-..++....+.+..+..+.+..+..+++++++|+.+||+.|+++|++++|+|+||||+.
T Consensus       449 KVDIWSLGIMaIEMveGEPPYlnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~HpFl~~  528 (550)
T KOG0578|consen  449 KVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKELLEHPFLKM  528 (550)
T ss_pred             cccchhhhhHHHHHhcCCCCccCCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHHhcChhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999964


Q ss_pred             c
Q psy3253         241 H  241 (251)
Q Consensus       241 ~  241 (251)
                      .
T Consensus       529 a  529 (550)
T KOG0578|consen  529 A  529 (550)
T ss_pred             c
Confidence            3

>KOG0592|consensus

Probab=100.00  E-value=1.5e-47  Score=328.15  Aligned_cols=208  Identities=29%  Similarity=0.559  Sum_probs=188.2

Q ss_pred             CCCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |.+| +||.|++||..|++...+|+|+||+++|+|.++|+ +-+.|++..++.++.+|+.||+|||++||||||||    
T Consensus       127 l~~L~~hPgivkLy~TFQD~~sLYFvLe~A~nGdll~~i~-K~Gsfde~caR~YAAeIldAleylH~~GIIHRDlK----  201 (604)
T KOG0592|consen  127 LTQLSGHPGIVKLYFTFQDEESLYFVLEYAPNGDLLDLIK-KYGSFDETCARFYAAEILDALEYLHSNGIIHRDLK----  201 (604)
T ss_pred             HHHhhCCCCeEEEEEEeecccceEEEEEecCCCcHHHHHH-HhCcchHHHHHHHHHHHHHHHHHHHhcCceeccCC----
Confidence            3456 89999999999999999999999999999999997 56899999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-----------c--cccccccccc
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-----------A--KRNTVIGTPF  146 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-----------~--~~~~~~~~~~  146 (251)
                                                   |+||+++++++++|.|||.|+......           .  ....++||..
T Consensus       202 -----------------------------PENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAe  252 (604)
T KOG0592|consen  202 -----------------------------PENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAE  252 (604)
T ss_pred             -----------------------------hhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeec
Confidence                                         899999999999999999998664311           1  1245789999


Q ss_pred             cccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         147 WMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       147 y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      |.+||++.....++.+|+|+|||++|+|+.|++||.+.+.......+...   .+..+..+++.+.+|++++|..||++|
T Consensus       253 YVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l---~y~fp~~fp~~a~dLv~KLLv~dp~~R  329 (604)
T KOG0592|consen  253 YVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQAL---DYEFPEGFPEDARDLIKKLLVRDPSDR  329 (604)
T ss_pred             ccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHh---cccCCCCCCHHHHHHHHHHHccCcccc
Confidence            99999999999999999999999999999999999988887777666554   555688899999999999999999999


Q ss_pred             CCHHHHhcChhhhhccCCC
Q psy3253         227 ATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       227 ps~~evl~hp~~~~~~~~~  245 (251)
                      +|++|+.+||||...+|+.
T Consensus       330 lt~~qIk~HpFF~~Vdw~n  348 (604)
T KOG0592|consen  330 LTSQQIKAHPFFEGVDWEN  348 (604)
T ss_pred             ccHHHHhhCcccccCChhh
Confidence            9999999999999999975

>KOG0598|consensus

Probab=100.00  E-value=1.8e-47  Score=315.06  Aligned_cols=209  Identities=32%  Similarity=0.532  Sum_probs=190.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||+||+++..|++..++|||+||+.||.|...++ +.+.|++..++.++.+|+.||.|||++||||||+|     
T Consensus        79 L~~v~hPFiv~l~ysFQt~~kLylVld~~~GGeLf~hL~-~eg~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlK-----  152 (357)
T KOG0598|consen   79 LSKIKHPFIVKLIYSFQTEEKLYLVLDYLNGGELFYHLQ-REGRFSEDRARFYLAEIVLALGYLHSKGIIYRDLK-----  152 (357)
T ss_pred             HHhCCCCcEeeeEEecccCCeEEEEEeccCCccHHHHHH-hcCCcchhHHHHHHHHHHHHHHHHHhCCeeeccCC-----
Confidence            457899999999999999999999999999999999887 67899999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.+|+++|+|||+++..........+..||+.|+|||++.+.+++.
T Consensus       153 ----------------------------PENILLd~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~  204 (357)
T KOG0598|consen  153 ----------------------------PENILLDEQGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDK  204 (357)
T ss_pred             ----------------------------HHHeeecCCCcEEEeccccchhcccCCCccccccCCccccChHHHhcCCCCc
Confidence                                        9999999999999999999987666656667789999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC----CHHHHhcCh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA----TASEMLNHE  236 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----s~~evl~hp  236 (251)
                      ++|-||+|+++|+|++|.+||.+.+.......+.......  .+..++++.++++.++|+.||++|.    +++++-+||
T Consensus       205 ~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~k~~~--~p~~ls~~ardll~~LL~rdp~~RLg~~~d~~~ik~Hp  282 (357)
T KOG0598|consen  205 AVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKGKLPL--PPGYLSEEARDLLKKLLKRDPRQRLGGPGDAEEIKRHP  282 (357)
T ss_pred             ccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcCcCCC--CCccCCHHHHHHHHHHhccCHHHhcCCCCChHHhhcCc
Confidence            9999999999999999999999988888777776664222  3555899999999999999999994    899999999


Q ss_pred             hhhhccCCC
Q psy3253         237 FIQRHDTDP  245 (251)
Q Consensus       237 ~~~~~~~~~  245 (251)
                      ||+..+|+.
T Consensus       283 fF~~inW~~  291 (357)
T KOG0598|consen  283 FFKGINWEK  291 (357)
T ss_pred             ccccCCHHH
Confidence            999999975

>KOG0583|consensus

Probab=100.00  E-value=4.2e-45  Score=314.52  Aligned_cols=204  Identities=31%  Similarity=0.565  Sum_probs=180.9

Q ss_pred             CCCCC-CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCD-SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~-hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |+.+. ||||+++++++.+..++|+|||||.||+|.+++.. .+.+.+.+++.++.|++.|+.|||++||+|||||    
T Consensus        73 ~~~~~~HpnI~~l~ev~~t~~~~~ivmEy~~gGdL~~~i~~-~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK----  147 (370)
T KOG0583|consen   73 LRRLRSHPNIIRLLEVFATPTKIYIVMEYCSGGDLFDYIVN-KGRLKEDEARKYFRQLISAVAYCHSRGIVHRDLK----  147 (370)
T ss_pred             HHHhccCCCEeEEEEEEecCCeEEEEEEecCCccHHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCC----
Confidence            35677 99999999999999999999999999999999985 7899999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCC-CCeEecccccccccCcccccccccccccccccccccccCC-
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-  157 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-  157 (251)
                                                   |+|++++.+ +.+||+|||++..............|++.|+|||++.+.. 
T Consensus       148 -----------------------------~ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~  198 (370)
T KOG0583|consen  148 -----------------------------PENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGT  198 (370)
T ss_pred             -----------------------------HHHEEecCCCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCC
Confidence                                         889999999 9999999999986632334556678999999999999877 


Q ss_pred             CC-cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCC-CHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         158 YD-CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW-TPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       158 ~~-~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      |+ .++||||+|+++|.|++|..||.+.+.......+...   .+..+..+ ++++.+|+.+||..||.+|+|+.|+++|
T Consensus       199 Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~---~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~h  275 (370)
T KOG0583|consen  199 YSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKG---EFKIPSYLLSPEARSLIEKMLVPDPSTRITLLEILEH  275 (370)
T ss_pred             cCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcC---CccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHhhC
Confidence            86 5799999999999999999999987766666655444   44456667 9999999999999999999999999999


Q ss_pred             hhhhhc
Q psy3253         236 EFIQRH  241 (251)
Q Consensus       236 p~~~~~  241 (251)
                      |||+..
T Consensus       276 ~w~~~~  281 (370)
T KOG0583|consen  276 PWFQKE  281 (370)
T ss_pred             hhhccC
Confidence            999973

>KOG0595|consensus

Probab=100.00  E-value=2.9e-45  Score=305.05  Aligned_cols=213  Identities=29%  Similarity=0.505  Sum_probs=180.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++..++.+|||||||+||+|.+|++ +.+.+++..++.++.||+.||++||+++||||||||.|||
T Consensus        63 Lkel~H~nIV~l~d~~~~~~~i~lVMEyC~gGDLs~yi~-~~~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiL  141 (429)
T KOG0595|consen   63 LKELKHPNIVRLLDCIEDDDFIYLVMEYCNGGDLSDYIR-RRGRLPEATARHFMQQLASALQFLHENNIIHRDLKPQNIL  141 (429)
T ss_pred             HHhcCCcceeeEEEEEecCCeEEEEEEeCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEE
Confidence            578999999999999999999999999999999999998 5679999999999999999999999999999999955555


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                      +..+.                        .+-   ..-.+||+|||+|+...+. ....+..|++.|||||++....|+.
T Consensus       142 Ls~~~------------------------~~~---~~~~LKIADFGfAR~L~~~-~~a~tlcGSplYMAPEV~~~~~YdA  193 (429)
T KOG0595|consen  142 LSTTA------------------------RND---TSPVLKIADFGFARFLQPG-SMAETLCGSPLYMAPEVIMSQQYDA  193 (429)
T ss_pred             eccCC------------------------CCC---CCceEEecccchhhhCCch-hHHHHhhCCccccCHHHHHhccccc
Confidence            44320                        000   0045899999999877643 3455678999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      |+|+||+|+++|++++|++||...+..+....+..+.......+...++...+++...+..+|..|.++.+-+.|++...
T Consensus       194 KADLWSiG~Ilyq~l~g~~Pf~a~t~~eL~~~~~k~~~~~~~~~~~~s~~~~~Ll~~ll~~~~~~~~~~~~~~~~~~l~~  273 (429)
T KOG0595|consen  194 KADLWSIGTILYQCLTGKPPFDAETPKELLLYIKKGNEIVPVLPAELSNPLRELLISLLQRNPKDRISFEDFFDHPFLAA  273 (429)
T ss_pred             hhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhccccccCchhhhccCchhhhhhHHHhcCccccCchHHhhhhhhccc
Confidence            99999999999999999999998888887776655544333345667888889999999999999999999999999865


Q ss_pred             cc
Q psy3253         241 HD  242 (251)
Q Consensus       241 ~~  242 (251)
                      ..
T Consensus       274 ~p  275 (429)
T KOG0595|consen  274 NP  275 (429)
T ss_pred             Cc
Confidence            43

>KOG0588|consensus

Probab=100.00  E-value=4.8e-45  Score=318.89  Aligned_cols=208  Identities=31%  Similarity=0.533  Sum_probs=187.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+-++||||+++|+++.++.++|+|+||+.||-|++++. .++++.+.++.+++.||+.|+.|+|..+|+|||+|     
T Consensus        66 MkLi~HpnVl~LydVwe~~~~lylvlEyv~gGELFdylv-~kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLK-----  139 (786)
T KOG0588|consen   66 MKLIEHPNVLRLYDVWENKQHLYLVLEYVPGGELFDYLV-RKGPLPEREAAHFFRQILDGVSYCHAFNICHRDLK-----  139 (786)
T ss_pred             HHHhcCCCeeeeeeeeccCceEEEEEEecCCchhHHHHH-hhCCCCCHHHHHHHHHHHHHHHHHhhhcceeccCC-----
Confidence            567899999999999999999999999999999999997 67899999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+|++++.++.+||+|||+|..-.+. ....+-+|++.|.|||++.+.+|..
T Consensus       140 ----------------------------pENlLLd~~~nIKIADFGMAsLe~~g-klLeTSCGSPHYA~PEIV~G~pYdG  190 (786)
T KOG0588|consen  140 ----------------------------PENLLLDVKNNIKIADFGMASLEVPG-KLLETSCGSPHYAAPEIVSGRPYDG  190 (786)
T ss_pred             ----------------------------chhhhhhcccCEeeeccceeecccCC-ccccccCCCcccCCchhhcCCCCCC
Confidence                                        88999999999999999999654333 2334567899999999999999865


Q ss_pred             -chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhh
Q psy3253         161 -VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ  239 (251)
Q Consensus       161 -~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~  239 (251)
                       ++||||.|+++|.|++|+.||.+.+.......+..+   .+..|..+++++.+||.+||+.||++|+|.+||++|||+.
T Consensus       191 ~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G---~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~  267 (786)
T KOG0588|consen  191 RPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRG---VFEMPSNISSEAQDLLRRMLDVDPSTRITTEEILKHPFLS  267 (786)
T ss_pred             CccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcC---cccCCCcCCHHHHHHHHHHhccCccccccHHHHhhCchhh
Confidence             799999999999999999999987777777666665   6677899999999999999999999999999999999999


Q ss_pred             hccCCCC
Q psy3253         240 RHDTDPS  246 (251)
Q Consensus       240 ~~~~~~~  246 (251)
                      .+...+.
T Consensus       268 g~~~~~~  274 (786)
T KOG0588|consen  268 GYTSLPS  274 (786)
T ss_pred             cCCCCCh
Confidence            8776653

>KOG0198|consensus

Probab=100.00  E-value=2.5e-45  Score=305.69  Aligned_cols=208  Identities=38%  Similarity=0.647  Sum_probs=173.3

Q ss_pred             CCCCCCCccceeeeeEeeCC--eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT--DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~--~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++|||||+++|......  .+++.|||+.+|+|.+++...++.+++..++.++.||+.||+|||++|++|||||   
T Consensus        68 L~~l~~p~IV~~~G~~~~~~~~~~~i~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK---  144 (313)
T KOG0198|consen   68 LSRLNHPNIVQYYGSSSSRENDEYNIFMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIK---  144 (313)
T ss_pred             HHhCCCCCEEeeCCccccccCeeeEeeeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcc---
Confidence            46889999999999755444  6999999999999999998555589999999999999999999999999999998   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCC-CCCeEecccccccccCcc---cccccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-EGHAKLADFGVAGQLTDT---MAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~-~~~~kl~dfg~~~~~~~~---~~~~~~~~~~~~y~aPE~~~  154 (251)
                                                    |+||+++. ++.+||+|||.++.....   ........||+.|+|||++.
T Consensus       145 ------------------------------~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~  194 (313)
T KOG0198|consen  145 ------------------------------PANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIR  194 (313)
T ss_pred             ------------------------------cceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhc
Confidence                                          88888888 789999999999866531   12234567999999999998


Q ss_pred             cC-CCCcchhHHHHHHHHHHHHhCCCCCCC-CCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         155 EI-GYDCVADMWSLGITALEMAEGKPPYGD-IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       155 ~~-~~~~~~DvwslG~~l~~l~~g~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      .. ...+++||||+||++.||+||++||.. .........+..... ....+..++++..+|+.+||..||++|||++|+
T Consensus       195 ~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~~-~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eL  273 (313)
T KOG0198|consen  195 NGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIGREDS-LPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEEL  273 (313)
T ss_pred             CCCcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHhccCC-CCCCCcccCHHHHHHHHHHhhcCcccCcCHHHH
Confidence            53 334589999999999999999999987 455554444444332 124577899999999999999999999999999


Q ss_pred             hcChhhhhcc
Q psy3253         233 LNHEFIQRHD  242 (251)
Q Consensus       233 l~hp~~~~~~  242 (251)
                      |+|||.+...
T Consensus       274 L~hpf~~~~~  283 (313)
T KOG0198|consen  274 LEHPFLKQNS  283 (313)
T ss_pred             hhChhhhccc
Confidence            9999997644

>KOG0661|consensus

Probab=100.00  E-value=2.6e-45  Score=310.17  Aligned_cols=207  Identities=28%  Similarity=0.476  Sum_probs=172.8

Q ss_pred             CCCCC-CCccceeeeeEeeCC-eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCD-SPYVVKYYGSYFKNT-DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~-hpniv~l~~~~~~~~-~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++ |||||++++++.+.+ .+|+|||||+. +|+++|+.++..|++..++.|+.||+.||+|+|++|+.|||+|   
T Consensus        62 L~kln~hpniikL~Evi~d~~~~L~fVfE~Md~-NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~GfFHRDlK---  137 (538)
T KOG0661|consen   62 LRKLNPHPNIIKLKEVIRDNDRILYFVFEFMDC-NLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLK---  137 (538)
T ss_pred             HHhcCCCCcchhhHHHhhccCceEeeeHHhhhh-hHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCC---
Confidence            46788 999999999998777 99999999976 9999999888999999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IG  157 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~  157 (251)
                                                    |+||++..+..+||+|||+|+.+... ......+.|++|+|||++.. .-
T Consensus       138 ------------------------------PENiLi~~~~~iKiaDFGLARev~Sk-pPYTeYVSTRWYRAPEvLLrs~~  186 (538)
T KOG0661|consen  138 ------------------------------PENILISGNDVIKIADFGLAREVRSK-PPYTEYVSTRWYRAPEVLLRSGY  186 (538)
T ss_pred             ------------------------------hhheEecccceeEecccccccccccC-CCcchhhhcccccchHHhhhccc
Confidence                                          66777776778999999999877543 23344567999999999964 66


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CCCCC---------------CCC---------CCCCCHH
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KPPPS---------------FRE---------PDVWTPE  210 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~~~~---------------~~~---------~~~~~~~  210 (251)
                      |+.+.||||+||+++|+.+-++.|.+.+..+.++.+..   .+...               ++.         ...++++
T Consensus       187 Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~  266 (538)
T KOG0661|consen  187 YSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNASSE  266 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcccCHH
Confidence            89999999999999999999999988776666554422   11100               000         1336889


Q ss_pred             HHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         211 FIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       211 ~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                      +.++|.+|+.|||.+|||++|+++||||+...
T Consensus       267 ~~~li~~ll~WDP~kRpTA~~al~~pffq~~~  298 (538)
T KOG0661|consen  267 AASLIERLLAWDPDKRPTASQALQHPFFQVGR  298 (538)
T ss_pred             HHHHHHHHhcCCCccCccHHHHhcCccccccc
Confidence            99999999999999999999999999998643

>KOG0582|consensus

Probab=100.00  E-value=2.5e-44  Score=302.24  Aligned_cols=210  Identities=44%  Similarity=0.820  Sum_probs=180.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |+.++||||++++.+|..+..+|+||+||.+||+.+.++.. ...+.|..+..+++++++||.|||.+|.||||||    
T Consensus        78 msl~~HPNIv~~~~sFvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvK----  153 (516)
T KOG0582|consen   78 MSLIDHPNIVTYHCSFVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVK----  153 (516)
T ss_pred             hhhcCCCCcceEEEEEEecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccc----
Confidence            57889999999999999999999999999999999999733 4579999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc----ccccccccccccccc--
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR----NTVIGTPFWMAPEVI--  153 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~----~~~~~~~~y~aPE~~--  153 (251)
                                                   +.||+++.+|.+||+|||.+........+.    ....||++|+|||++  
T Consensus       154 -----------------------------AgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q  204 (516)
T KOG0582|consen  154 -----------------------------AGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQ  204 (516)
T ss_pred             -----------------------------cccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhh
Confidence                                         889999999999999999886443222222    445799999999995  


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCC-------CCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         154 QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPP-------SFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       154 ~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      +...|+.|+||||||++..|+.+|..||....+......-..+.++       .......++..++.++..||+.||++|
T Consensus       205 ~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kR  284 (516)
T KOG0582|consen  205 QLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKR  284 (516)
T ss_pred             cccCccchhhhhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHHhhcCcccC
Confidence            3467999999999999999999999999998888777665555544       222344567889999999999999999


Q ss_pred             CCHHHHhcChhhhhccC
Q psy3253         227 ATASEMLNHEFIQRHDT  243 (251)
Q Consensus       227 ps~~evl~hp~~~~~~~  243 (251)
                      ||++++++|+||+....
T Consensus       285 ptAskLlkh~FFk~~k~  301 (516)
T KOG0582|consen  285 PTASKLLKHAFFKKAKS  301 (516)
T ss_pred             CCHHHHhccHHHhhccc
Confidence            99999999999987543

>KOG0033|consensus

Probab=100.00  E-value=7.7e-45  Score=285.00  Aligned_cols=207  Identities=28%  Similarity=0.437  Sum_probs=179.4

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.|+||||+++.+.+......|||||+++|++|..-+-++ .-+++..+..++.||+.||.|+|.+||+|||+|      
T Consensus        65 ~~LqHP~IvrL~~ti~~~~~~ylvFe~m~G~dl~~eIV~R-~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvk------  137 (355)
T KOG0033|consen   65 RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVAR-EFYSEADASHCIQQILEALAYCHSNGIVHRDLK------  137 (355)
T ss_pred             HhcCCCcEeehhhhhcccceeEEEEecccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCceeccCC------
Confidence            4689999999999999999999999999999998766533 567999999999999999999999999999998      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCC---CeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG---HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                 |+|+++....   -+||+|||++.... ...-+....|||.|+|||++.+.++
T Consensus       138 ---------------------------P~nllLASK~~~A~vKL~~FGvAi~l~-~g~~~~G~~GtP~fmaPEvvrkdpy  189 (355)
T KOG0033|consen  138 ---------------------------PENLLLASKAKGAAVKLADFGLAIEVN-DGEAWHGFAGTPGYLSPEVLKKDPY  189 (355)
T ss_pred             ---------------------------hhheeeeeccCCCceeecccceEEEeC-CccccccccCCCcccCHHHhhcCCC
Confidence                                       5555553322   38999999998887 4345667789999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++|||+.|+++|-++.|.+||++.+....+..+..+. ...-+.+..++++.++|+.+||..||++|+|+.|+|+|||
T Consensus       190 ~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~HpW  269 (355)
T KOG0033|consen  190 SKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALKHPW  269 (355)
T ss_pred             CCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhCCch
Confidence            999999999999999999999999988888877766542 2222357788999999999999999999999999999999


Q ss_pred             hhhccC
Q psy3253         238 IQRHDT  243 (251)
Q Consensus       238 ~~~~~~  243 (251)
                      +++.+.
T Consensus       270 i~~r~~  275 (355)
T KOG0033|consen  270 ICNRER  275 (355)
T ss_pred             hcchHH
Confidence            987653

>KOG0616|consensus

Probab=100.00  E-value=9.9e-45  Score=290.83  Aligned_cols=205  Identities=31%  Similarity=0.590  Sum_probs=188.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+.+.||+++++++.|.+...+||||||.+||.|+.+++ +.+.|++..++.++.||+.||+|||+.+|++||+|     
T Consensus        98 L~~v~~PFlv~l~~t~~d~~~lymvmeyv~GGElFS~Lr-k~~rF~e~~arFYAAeivlAleylH~~~iiYRDLK-----  171 (355)
T KOG0616|consen   98 LKAVSHPFLVKLYGTFKDNSNLYMVMEYVPGGELFSYLR-KSGRFSEPHARFYAAEIVLALEYLHSLDIIYRDLK-----  171 (355)
T ss_pred             HhhccCceeEEEEEeeccCCeEEEEEeccCCccHHHHHH-hcCCCCchhHHHHHHHHHHHHHHHHhcCeeeccCC-----
Confidence            467899999999999999999999999999999999998 56899999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.+|++||.|||+|+....   ...+..|||.|+|||++...++..
T Consensus       172 ----------------------------PENiLlD~~G~iKitDFGFAK~v~~---rT~TlCGTPeYLAPEii~sk~ynk  220 (355)
T KOG0616|consen  172 ----------------------------PENLLLDQNGHIKITDFGFAKRVSG---RTWTLCGTPEYLAPEIIQSKGYNK  220 (355)
T ss_pred             ----------------------------hHHeeeccCCcEEEEeccceEEecC---cEEEecCCccccChHHhhcCCCCc
Confidence                                        8899999999999999999987653   356778999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc-----CCHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R-----ps~~evl~h  235 (251)
                      ++|=||||+++|||+.|.+||.+.++......+...   ....|..+++++++|+.++|+.|-.+|     ...++|.+|
T Consensus       221 avDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI~~~---~v~fP~~fs~~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H  297 (355)
T KOG0616|consen  221 AVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKILEG---KVKFPSYFSSDAKDLLKKLLQVDLTKRFGNLKNGVEDIKNH  297 (355)
T ss_pred             chhHHHHHHHHHHHHcCCCCCcCCChHHHHHHHHhC---cccCCcccCHHHHHHHHHHHhhhhHhhhcCcCCCccccccC
Confidence            999999999999999999999998888877777665   445588899999999999999999999     467899999


Q ss_pred             hhhhhccCCC
Q psy3253         236 EFIQRHDTDP  245 (251)
Q Consensus       236 p~~~~~~~~~  245 (251)
                      |||+..+|++
T Consensus       298 ~wF~~v~W~~  307 (355)
T KOG0616|consen  298 PWFKGVDWEA  307 (355)
T ss_pred             cccccccHHH
Confidence            9999999976

>KOG0593|consensus

Probab=100.00  E-value=9.3e-45  Score=291.95  Aligned_cols=207  Identities=24%  Similarity=0.478  Sum_probs=172.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+||.|||+|.+.++|..+..++||||||+. ++-+-++....+++...++.+++|++.|+.|+|++++||||||     
T Consensus        55 LKqLkH~NLVnLiEVFrrkrklhLVFE~~dh-TvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIK-----  128 (396)
T KOG0593|consen   55 LKQLKHENLVNLIEVFRRKRKLHLVFEYCDH-TVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIK-----  128 (396)
T ss_pred             HHhcccchHHHHHHHHHhcceeEEEeeecch-HHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCC-----
Confidence            5799999999999999999999999999987 6666666567789999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.+|.+||||||+|+....+.......+.|.+|+|||.+.+ -+|.
T Consensus       129 ----------------------------PENILit~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG  180 (396)
T KOG0593|consen  129 ----------------------------PENILITQNGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYG  180 (396)
T ss_pred             ----------------------------hhheEEecCCcEEeccchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCC
Confidence                                        88999999999999999999887754444444567999999999987 7799


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CCC------------------CCCC-------CCCCCCHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KPP------------------PSFR-------EPDVWTPEF  211 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~~------------------~~~~-------~~~~~~~~~  211 (251)
                      .++||||+||++.||++|++.|.+.......+.+..   ...                  +...       .....+..+
T Consensus       181 ~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~  260 (396)
T KOG0593|consen  181 KPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVL  260 (396)
T ss_pred             CcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHH
Confidence            999999999999999999999977655444433211   000                  0000       123356778


Q ss_pred             HHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         212 IDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       212 ~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      .||+++||..||.+|++.+|++.||||+++
T Consensus       261 ld~~k~cL~~dP~~R~sc~qll~H~yFd~~  290 (396)
T KOG0593|consen  261 LDLLKKCLKMDPDDRLSCEQLLHHPYFDGF  290 (396)
T ss_pred             HHHHHHHhcCCccccccHHHHhcChHHHHH
Confidence            999999999999999999999999999653

>KOG0574|consensus

Probab=100.00  E-value=2.6e-45  Score=295.43  Aligned_cols=209  Identities=76%  Similarity=1.293  Sum_probs=201.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+|+++|+||++||.|.....+++|||||..|+.++.++.++.++++.++..++...+.||+|||...-||||||     
T Consensus        82 MQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIK-----  156 (502)
T KOG0574|consen   82 MQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIK-----  156 (502)
T ss_pred             HHHcCCchhhhhhhhhccCCceEeehhhcCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcc-----
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  ..||+++.+|+.||+|||.+.+.++...+..+..||++|+|||++....|..
T Consensus       157 ----------------------------AGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY~~  208 (502)
T KOG0574|consen  157 ----------------------------AGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDT  208 (502)
T ss_pred             ----------------------------cccEEEcccchhhhhhccccchhhhhHHhhCccccCcccccHHHHHHhccch
Confidence                                        8899999999999999999999988888899999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++||||||++..+|..|++||.+..+...++++..++++.+..|..++.++.|++++||..+|++|.|+.++++|||+++
T Consensus       209 ~ADIWSLGITaIEMAEG~PPYsDIHPMRAIFMIPT~PPPTF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~H~Fikn  288 (502)
T KOG0574|consen  209 KADIWSLGITAIEMAEGRPPYSDIHPMRAIFMIPTKPPPTFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCEHTFIKN  288 (502)
T ss_pred             hhhHhhhcchhhhhhcCCCCcccccccceeEeccCCCCCCCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cc
Q psy3253         241 HD  242 (251)
Q Consensus       241 ~~  242 (251)
                      ..
T Consensus       289 A~  290 (502)
T KOG0574|consen  289 AP  290 (502)
T ss_pred             CC
Confidence            43

>KOG0192|consensus

Probab=100.00  E-value=2.4e-43  Score=301.48  Aligned_cols=199  Identities=32%  Similarity=0.572  Sum_probs=171.6

Q ss_pred             CCCCCCCccceeeeeEeeCC-eEEEEEEccCCCCHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHhCC-ccccCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT-DLWIVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLKGLEYLHLRR-KIHRDIKAG   77 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~-~~~lv~e~~~~gsL~~~~~~-~~~~l~~~~~~~~~~~i~~~l~~LH~~~-iiH~dik~~   77 (251)
                      |++++|||||+++|++.+.. .+++||||+.+|+|.++++. +...++...++.++.+|+.|+.|||+++ |||||||  
T Consensus        93 l~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK--  170 (362)
T KOG0192|consen   93 LSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLK--  170 (362)
T ss_pred             HHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccC--
Confidence            45799999999999998877 79999999999999999986 3789999999999999999999999999 9999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCC-CeEecccccccccCcccccccccccccccccccccc--
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ--  154 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~--  154 (251)
                                                     ++|++++.++ ++||+|||+++.............||..|||||++.  
T Consensus       171 -------------------------------~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~  219 (362)
T KOG0192|consen  171 -------------------------------SDNILVDLKGKTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGE  219 (362)
T ss_pred             -------------------------------hhhEEEcCCCCEEEECCCccceeeccccccccCCCCCccccChhhhcCC
Confidence                                           8899999997 999999999976553322223357899999999998  


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC-CCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP-TKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      ...++.++||||||+++|+++||..||.+.........+. ....+  ..+..+++.+.++|++||..||++||++.|++
T Consensus       220 ~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~~~~~v~~~~~Rp--~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~  297 (362)
T KOG0192|consen  220 KSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQVASAVVVGGLRP--PIPKECPPHLSSLMERCWLVDPSRRPSFLEIV  297 (362)
T ss_pred             CCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCC--CCCccCCHHHHHHHHHhCCCCCCcCCCHHHHH
Confidence            6689999999999999999999999998888755555443 33322  33566899999999999999999999999986


Q ss_pred             c
Q psy3253         234 N  234 (251)
Q Consensus       234 ~  234 (251)
                      .
T Consensus       298 ~  298 (362)
T KOG0192|consen  298 S  298 (362)
T ss_pred             H
Confidence            4

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=1.3e-43  Score=302.58  Aligned_cols=208  Identities=28%  Similarity=0.495  Sum_probs=178.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...|+||||+.+|+|.+++. ....+++..+..++.||+.||+|||++|++|||||     
T Consensus        49 l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlk-----  122 (323)
T cd05571          49 LQNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLS-RERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLK-----  122 (323)
T ss_pred             HHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCC-----
Confidence            357899999999999999999999999999999999987 45689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||+++.............|++.|+|||++.+..++.
T Consensus       123 ----------------------------p~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  174 (323)
T cd05571         123 ----------------------------LENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGR  174 (323)
T ss_pred             ----------------------------HHHEEECCCCCEEEeeCCCCcccccCCCcccceecCccccChhhhcCCCCCc
Confidence                                        8899999999999999999875432222333456899999999999889999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~h  235 (251)
                      ++||||+||++|+|++|..||.+.+.......+....   ...+..+++++.++|.+||..||++||     +++|+++|
T Consensus       175 ~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  251 (323)
T cd05571         175 AVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEE---IRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEH  251 (323)
T ss_pred             cccCcccchhhhhhhcCCCCCCCCCHHHHHHHHHcCC---CCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcC
Confidence            9999999999999999999997766555544443332   233567899999999999999999999     89999999


Q ss_pred             hhhhhccCCC
Q psy3253         236 EFIQRHDTDP  245 (251)
Q Consensus       236 p~~~~~~~~~  245 (251)
                      |||+..+|..
T Consensus       252 ~~f~~~~~~~  261 (323)
T cd05571         252 RFFASINWQD  261 (323)
T ss_pred             CCcCCCCHHH
Confidence            9998866543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0591|consensus

Probab=100.00  E-value=8.4e-45  Score=289.64  Aligned_cols=195  Identities=30%  Similarity=0.607  Sum_probs=170.9

Q ss_pred             CCCCCCCccceeee-eEeeCCe-EEEEEEccCCCCHHHHHH---HhCCCCCHHHHHHHHHHHHHHHHHHHh--CC--ccc
Q psy3253           1 MQQCDSPYVVKYYG-SYFKNTD-LWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCDTLKGLEYLHL--RR--KIH   71 (251)
Q Consensus         1 l~~l~hpniv~l~~-~~~~~~~-~~lv~e~~~~gsL~~~~~---~~~~~l~~~~~~~~~~~i~~~l~~LH~--~~--iiH   71 (251)
                      |+||+|||||++++ .|.+++. +++|||||++|+|++.++   +.+..+++..++.++.|++.||..+|.  ..  ++|
T Consensus        72 LkQL~HpNIVqYy~~~f~~~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmH  151 (375)
T KOG0591|consen   72 LKQLNHPNIVQYYAHSFIEDNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMH  151 (375)
T ss_pred             HHhcCCchHHHHHHHhhhccchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceee
Confidence            57999999999998 7766655 999999999999999996   335679999999999999999999999  44  899


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPE  151 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  151 (251)
                      ||||                                 |.||+++.+|.+||+|||+++............+|||.||+||
T Consensus       152 RDIK---------------------------------PaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE  198 (375)
T KOG0591|consen  152 RDIK---------------------------------PANIFLTANGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPE  198 (375)
T ss_pred             ccCc---------------------------------chheEEcCCCceeeccchhHhHhcchhHHHHhhcCCCcccCHH
Confidence            9999                                 9999999999999999999998887766677789999999999


Q ss_pred             ccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         152 VIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       152 ~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                      ++...+|+.++||||+||++|||+.-++||.+.+-.+....+..+..++.+ ...+|.++..+|..|+..||..||+.
T Consensus       199 ~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~~~p-~~~YS~~l~~li~~ci~vd~~~RP~t  275 (375)
T KOG0591|consen  199 RIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYPPLP-DEHYSTDLRELINMCIAVDPEQRPDT  275 (375)
T ss_pred             HHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCCCCc-HHHhhhHHHHHHHHHccCCcccCCCc
Confidence            999999999999999999999999999999887666666666665433321 25678999999999999999999985

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.6e-43  Score=296.39  Aligned_cols=206  Identities=30%  Similarity=0.474  Sum_probs=176.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....|+||||+.+|+|.+++. ....+++..++.++.|++.||.|||++|++|||||     
T Consensus        47 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlk-----  120 (312)
T cd05585          47 LAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGELFHHLQ-REGRFDLSRARFYTAELLCALENLHKFNVIYRDLK-----  120 (312)
T ss_pred             HHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCC-----
Confidence            357899999999999999999999999999999999997 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||+++.............||+.|+|||++.+..++.
T Consensus       121 ----------------------------p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  172 (312)
T cd05585         121 ----------------------------PENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTK  172 (312)
T ss_pred             ----------------------------HHHeEECCCCcEEEEECcccccCccCCCccccccCCcccCCHHHHcCCCCCC
Confidence                                        8899999999999999999875433323334456899999999999989999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC---CHHHHhcChh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA---TASEMLNHEF  237 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp---s~~evl~hp~  237 (251)
                      ++||||+||++|+|++|..||.+.+.......+...   ....+..+++++.+++.+||..||++||   +++|+++|||
T Consensus       173 ~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~hp~  249 (312)
T cd05585         173 AVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQE---PLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNHPF  249 (312)
T ss_pred             ccceechhHHHHHHHhCCCCcCCCCHHHHHHHHHcC---CCCCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHcCCC
Confidence            999999999999999999999876655554444333   2233567899999999999999999997   5899999999


Q ss_pred             hhhccC
Q psy3253         238 IQRHDT  243 (251)
Q Consensus       238 ~~~~~~  243 (251)
                      |++.++
T Consensus       250 ~~~~~~  255 (312)
T cd05585         250 FSQLSW  255 (312)
T ss_pred             cCCCCH
Confidence            997654

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0197|consensus

Probab=100.00  E-value=7.4e-43  Score=299.60  Aligned_cols=198  Identities=26%  Similarity=0.451  Sum_probs=176.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~-~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++|+|+|||++++++..+..+|||||||..|+|.+|++. .+..+...+.+.++.||++|++||.++++|||||-    
T Consensus       255 Mk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLA----  330 (468)
T KOG0197|consen  255 MKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLA----  330 (468)
T ss_pred             HHhCcccCeEEEEEEEecCCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhh----
Confidence            6789999999999999988899999999999999999985 45778999999999999999999999999999965    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc-cccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR-NTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   .+||+++.+..+||+|||+|+...+..... .....+..|.|||.+....+
T Consensus       331 -----------------------------ARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~F  381 (468)
T KOG0197|consen  331 -----------------------------ARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKF  381 (468)
T ss_pred             -----------------------------hhheeeccCceEEEcccccccccCCCceeecCCCCCCceecCHHHHhhCCc
Confidence                                         889999999999999999999554443322 22234567999999999999


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      +.+|||||||++|||++| |+.|+.+.+..+.+..+..+.  .+..|..+|+++.++|..||..+|++|||++.+.
T Consensus       382 S~kSDVWSFGVlL~E~fT~G~~py~~msn~ev~~~le~Gy--Rlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~  455 (468)
T KOG0197|consen  382 SSKSDVWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGY--RLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLR  455 (468)
T ss_pred             ccccceeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccC--cCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHH
Confidence            999999999999999998 999999999999888887775  4556899999999999999999999999999775

>KOG0605|consensus

Probab=100.00  E-value=9.3e-43  Score=298.51  Aligned_cols=210  Identities=36%  Similarity=0.571  Sum_probs=181.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |...++|.||++|.+|++...+||||||++||++..++. +.+.|++..++.++.+++.||..+|+.|+||||||     
T Consensus       195 L~~~ds~~vVKLyYsFQD~~~LYLiMEylPGGD~mTLL~-~~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIK-----  268 (550)
T KOG0605|consen  195 LAEVDSPWVVKLYYSFQDKEYLYLIMEYLPGGDMMTLLM-RKDTLTEDWARFYIAETVLAIESIHQLGYIHRDIK-----  268 (550)
T ss_pred             hhhcCCCcEEEEEEEecCCCeeEEEEEecCCccHHHHHH-hcCcCchHHHHHHHHHHHHHHHHHHHcCcccccCC-----
Confidence            345789999999999999999999999999999999997 67899999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCc------------------------cc-
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTD------------------------TM-  135 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~------------------------~~-  135 (251)
                                                  |+|++++..|++||+|||++.....                        .. 
T Consensus       269 ----------------------------PdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (550)
T KOG0605|consen  269 ----------------------------PDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPK  320 (550)
T ss_pred             ----------------------------hhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccc
Confidence                                        9999999999999999999952211                        00 


Q ss_pred             --ccc--------------------cccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc
Q psy3253         136 --AKR--------------------NTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI  193 (251)
Q Consensus       136 --~~~--------------------~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~  193 (251)
                        ...                    ...+|||-|+|||++.+.+|...+|-|||||++|||+.|.+||.+.++.+....+
T Consensus       321 ~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI  400 (550)
T KOG0605|consen  321 FNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSETPQETYRKI  400 (550)
T ss_pred             cccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence              000                    1135899999999999999999999999999999999999999988887776655


Q ss_pred             CCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccC---CHHHHhcChhhhhccCCC
Q psy3253         194 PTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERA---TASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       194 ~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp---s~~evl~hp~~~~~~~~~  245 (251)
                      ... ....++....++++..|||.+|+. ||++|.   .++||-+||||+..+|+.
T Consensus       401 ~nwr~~l~fP~~~~~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~HPfF~~v~W~~  455 (550)
T KOG0605|consen  401 VNWRETLKFPEEVDLSDEAKDLITRLLC-DPENRLGSKGAEEIKKHPFFKGVDWDH  455 (550)
T ss_pred             HHHhhhccCCCcCcccHHHHHHHHHHhc-CHHHhcCcccHHHHhcCCccccCCcch
Confidence            443 223444455678999999999999 999995   699999999999999975

>KOG0599|consensus

Probab=100.00  E-value=1.1e-43  Score=282.50  Aligned_cols=203  Identities=33%  Similarity=0.507  Sum_probs=179.8

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      .||+|+++.++|+.+..+++|+|.|..|.|++++. ..-.+++.+.+.+.+|+..|+.|||..+|+|||+|         
T Consensus        81 GHP~II~l~D~yes~sF~FlVFdl~prGELFDyLt-s~VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLK---------  150 (411)
T KOG0599|consen   81 GHPYIIDLQDVYESDAFVFLVFDLMPRGELFDYLT-SKVTLSEKETRRIMRQLFEGVEYLHARNIVHRDLK---------  150 (411)
T ss_pred             CCCcEEEeeeeccCcchhhhhhhhcccchHHHHhh-hheeecHHHHHHHHHHHHHHHHHHHHhhhhhcccC---------
Confidence            79999999999999999999999999999999996 55789999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc------cCCC
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ------EIGY  158 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~  158 (251)
                                              |+||+.+.+..++|+|||++++.... .+.....|||.|.|||.+.      ...|
T Consensus       151 ------------------------pENILlddn~~i~isDFGFa~~l~~G-ekLrelCGTPgYLAPEtikC~m~e~~pGY  205 (411)
T KOG0599|consen  151 ------------------------PENILLDDNMNIKISDFGFACQLEPG-EKLRELCGTPGYLAPETIKCSMYENHPGY  205 (411)
T ss_pred             ------------------------hhheeeccccceEEeccceeeccCCc-hhHHHhcCCCcccChhheeeecccCCCCc
Confidence                                    88999999999999999999887654 4556678999999999984      3457


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +..+|+|+.|+++|.++.|.+||+...+.-....+..+. .-.-+.+..++...+|||.+||+.||++|.|++|+|+|||
T Consensus       206 s~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaHpf  285 (411)
T KOG0599|consen  206 SKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAHPF  285 (411)
T ss_pred             cchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcChH
Confidence            888999999999999999999999888777666665542 2233457788999999999999999999999999999999


Q ss_pred             hhhcc
Q psy3253         238 IQRHD  242 (251)
Q Consensus       238 ~~~~~  242 (251)
                      |.+..
T Consensus       286 f~q~~  290 (411)
T KOG0599|consen  286 FIQIA  290 (411)
T ss_pred             HHHHH
Confidence            96643

>KOG0694|consensus

Probab=100.00  E-value=2.4e-43  Score=309.57  Aligned_cols=203  Identities=32%  Similarity=0.541  Sum_probs=186.4

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||.++++++.|++++++|.||||+.||++....  +.+.|++..++.+++.++.||+|||++|||+||||         
T Consensus       427 ~HPFL~~L~~~fQT~~~l~fvmey~~Ggdm~~~~--~~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlK---------  495 (694)
T KOG0694|consen  427 RHPFLVNLFSCFQTKEHLFFVMEYVAGGDLMHHI--HTDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLK---------  495 (694)
T ss_pred             cCCeEeecccccccCCeEEEEEEecCCCcEEEEE--ecccccHHHHHHHHHHHHHHHHHHHhcCceeeecc---------
Confidence            6999999999999999999999999999965443  45889999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhH
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM  164 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  164 (251)
                                              -+||+++..|++||+|||+++.........++..||+.|+|||++.+..|+.++|=
T Consensus       496 ------------------------LdNiLLD~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDW  551 (694)
T KOG0694|consen  496 ------------------------LDNLLLDTEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDW  551 (694)
T ss_pred             ------------------------hhheEEcccCcEEecccccccccCCCCCccccccCChhhcChhhhccCcccchhhH
Confidence                                    88999999999999999999987655567888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHhcChhhh
Q psy3253         165 WSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEMLNHEFIQ  239 (251)
Q Consensus       165 wslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl~hp~~~  239 (251)
                      |||||++|+|+.|+.||.+.+..+....|.....   ..|..++.+..++++++|..||++|.-     +++|..||||+
T Consensus       552 W~lGVLlyeML~Gq~PF~gddEee~FdsI~~d~~---~yP~~ls~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr  628 (694)
T KOG0694|consen  552 WGLGVLLYEMLVGESPFPGDDEEEVFDSIVNDEV---RYPRFLSKEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFR  628 (694)
T ss_pred             HHHHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCC---CCCCcccHHHHHHHHHHhccCcccccCCCCCCchhhhhCCccc
Confidence            9999999999999999999999999888877643   347788999999999999999999963     68999999999


Q ss_pred             hccCCC
Q psy3253         240 RHDTDP  245 (251)
Q Consensus       240 ~~~~~~  245 (251)
                      ..+|+.
T Consensus       629 ~i~w~~  634 (694)
T KOG0694|consen  629 SIDWDD  634 (694)
T ss_pred             cCCHHH
Confidence            999974

>KOG0201|consensus

Probab=100.00  E-value=3.7e-44  Score=300.65  Aligned_cols=205  Identities=59%  Similarity=1.087  Sum_probs=191.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |.++++|||.++|+.|..+..++++||||.||++.++++ .+..+.+..+..++.+++.||.|||.++.+|||||     
T Consensus        65 Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGsv~~lL~-~~~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIK-----  138 (467)
T KOG0201|consen   65 LSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGSVLDLLK-SGNILDEFEIAVILREVLKGLDYLHSEKKIHRDIK-----  138 (467)
T ss_pred             HHhcCcchHHhhhhheeecccHHHHHHHhcCcchhhhhc-cCCCCccceeeeehHHHHHHhhhhhhcceeccccc-----
Confidence            467899999999999999999999999999999999997 45556999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  +.||++..+|.+|++|||.+.+......+..+..||+.|||||++....|+.
T Consensus       139 ----------------------------aanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~  190 (467)
T KOG0201|consen  139 ----------------------------AANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDT  190 (467)
T ss_pred             ----------------------------ccceeEeccCcEEEEecceeeeeechhhccccccccccccchhhhccccccc
Confidence                                        8899998889999999999998888777778899999999999999889999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++||||||++++||.+|.+|+.+..++.....+....++.+..  .+++.+++|+..||++||+.|||+.++|+|+|+++
T Consensus       191 KADIWSLGITaiEla~GePP~s~~hPmrvlflIpk~~PP~L~~--~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh~FIk~  268 (467)
T KOG0201|consen  191 KADIWSLGITAIELAKGEPPHSKLHPMRVLFLIPKSAPPRLDG--DFSPPFKEFVEACLDKNPEFRPSAKELLKHKFIKR  268 (467)
T ss_pred             hhhhhhhhHHHHHHhcCCCCCcccCcceEEEeccCCCCCcccc--ccCHHHHHHHHHHhhcCcccCcCHHHHhhhHHHHh
Confidence            9999999999999999999999999999998888888887754  78999999999999999999999999999999988


Q ss_pred             c
Q psy3253         241 H  241 (251)
Q Consensus       241 ~  241 (251)
                      .
T Consensus       269 a  269 (467)
T KOG0201|consen  269 A  269 (467)
T ss_pred             c
Confidence            3

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=2.4e-42  Score=294.78  Aligned_cols=207  Identities=29%  Similarity=0.513  Sum_probs=176.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||++++++|......|+||||+++|+|..++. ....+++..++.++.||+.||.|||++|++|||||     
T Consensus        49 l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlk-----  122 (323)
T cd05595          49 LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-RERVFTEERARFYGAEIVSALEYLHSRDVVYRDIK-----  122 (323)
T ss_pred             HHhCCCCCCcceeeEEecCCEEEEEEeCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC-----
Confidence            357899999999999999999999999999999998886 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++..............|++.|+|||++.+..++.
T Consensus       123 ----------------------------p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  174 (323)
T cd05595         123 ----------------------------LENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGR  174 (323)
T ss_pred             ----------------------------HHHEEEcCCCCEEecccHHhccccCCCCccccccCCcCcCCcccccCCCCCc
Confidence                                        8899999999999999999865332222223346889999999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~h  235 (251)
                      ++|+||+||++|+|++|..||...+.......+...   ....+..+++++.++|.+||+.||++|+     +++++++|
T Consensus       175 ~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h  251 (323)
T cd05595         175 AVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILME---EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  251 (323)
T ss_pred             hhchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHhcC---CCCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcC
Confidence            999999999999999999999776655544443332   2223567899999999999999999998     99999999


Q ss_pred             hhhhhccCC
Q psy3253         236 EFIQRHDTD  244 (251)
Q Consensus       236 p~~~~~~~~  244 (251)
                      |||...+|.
T Consensus       252 ~~~~~~~~~  260 (323)
T cd05595         252 RFFLSINWQ  260 (323)
T ss_pred             CCcCCCCHH
Confidence            999887654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1e-42  Score=292.86  Aligned_cols=205  Identities=32%  Similarity=0.514  Sum_probs=176.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...|+||||+.+|+|.++++ ....+++..+..++.|++.||.|||++|++|||||     
T Consensus        55 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----  128 (291)
T cd05612          55 LKEVSHPFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLR-NSGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLK-----  128 (291)
T ss_pred             HHhCCCCcHhhhHhhhccCCeEEEEEeCCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-----
Confidence            457899999999999999999999999999999999997 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++......   .....|++.|+|||++.+..++.
T Consensus       129 ----------------------------p~NIli~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~  177 (291)
T cd05612         129 ----------------------------PENILLDKEGHIKLTDFGFAKKLRDR---TWTLCGTPEYLAPEVIQSKGHNK  177 (291)
T ss_pred             ----------------------------HHHeEECCCCCEEEEecCcchhccCC---cccccCChhhcCHHHHcCCCCCc
Confidence                                        88999998999999999998755322   22345788999999999888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl~h  235 (251)
                      ++||||+||++|+|++|..||.+.+.......+....   ...+..+++.+.++|++||+.||++|++     ++|+++|
T Consensus       178 ~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  254 (291)
T cd05612         178 AVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGK---LEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNH  254 (291)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC---cCCCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhcC
Confidence            9999999999999999999998766555444443332   2235567899999999999999999995     9999999


Q ss_pred             hhhhhccCCC
Q psy3253         236 EFIQRHDTDP  245 (251)
Q Consensus       236 p~~~~~~~~~  245 (251)
                      |||+..+|..
T Consensus       255 ~~~~~~~~~~  264 (291)
T cd05612         255 RWFKSVDWDD  264 (291)
T ss_pred             ccccCCCHHH
Confidence            9999877764

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=1.5e-42  Score=296.68  Aligned_cols=204  Identities=27%  Similarity=0.503  Sum_probs=176.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+++..|+||||+.+|+|.+++. ....+++..+..++.||+.||.|||++|++|||||     
T Consensus        72 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlk-----  145 (329)
T PTZ00263         72 LMELSHPFIVNMMCSFQDENRVYFLLEFVVGGELFTHLR-KAGRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLK-----  145 (329)
T ss_pred             HHhCCCCCCCcEEEEEEcCCEEEEEEcCCCCChHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-----
Confidence            357899999999999999999999999999999999997 45688999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++......   .....|++.|+|||++.+..++.
T Consensus       146 ----------------------------p~NIll~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~  194 (329)
T PTZ00263        146 ----------------------------PENLLLDNKGHVKVTDFGFAKKVPDR---TFTLCGTPEYLAPEVIQSKGHGK  194 (329)
T ss_pred             ----------------------------HHHEEECCCCCEEEeeccCceEcCCC---cceecCChhhcCHHHHcCCCCCC
Confidence                                        88999999999999999999765432   22346788999999999988999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl~h  235 (251)
                      ++|+|||||++|+|++|..||.+.........+....   ...+..++..+.+|+.+||+.||++|++     ++++++|
T Consensus       195 ~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~---~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h  271 (329)
T PTZ00263        195 AVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGR---LKFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNH  271 (329)
T ss_pred             cceeechHHHHHHHHcCCCCCCCCCHHHHHHHHhcCC---cCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence            9999999999999999999998766655544444332   2235567899999999999999999986     7999999


Q ss_pred             hhhhhccCC
Q psy3253         236 EFIQRHDTD  244 (251)
Q Consensus       236 p~~~~~~~~  244 (251)
                      |||+..+|+
T Consensus       272 p~f~~~~~~  280 (329)
T PTZ00263        272 PYFHGANWD  280 (329)
T ss_pred             CccCCCCHH
Confidence            999987665

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=2.6e-42  Score=295.17  Aligned_cols=207  Identities=27%  Similarity=0.503  Sum_probs=176.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...|+||||+.+|+|.+++. ....+++.+++.++.||+.||.|||++|++|||||     
T Consensus        49 l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~-~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDik-----  122 (328)
T cd05593          49 LKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLS-RERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLK-----  122 (328)
T ss_pred             HHhCCCCCCcceEEEEEcCCEEEEEEeCCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccC-----
Confidence            457899999999999999999999999999999998886 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.+||+|||+++.............|++.|+|||.+.+..++.
T Consensus       123 ----------------------------p~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  174 (328)
T cd05593         123 ----------------------------LENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGR  174 (328)
T ss_pred             ----------------------------HHHeEECCCCcEEEecCcCCccCCCcccccccccCCcCccChhhhcCCCCCc
Confidence                                        8899999999999999999865332222233346889999999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~h  235 (251)
                      ++||||+||++|+|++|..||.+.+.......+...   ....+..+++++.+++.+||..||++|+     +++|+++|
T Consensus       175 ~~DiwslGvil~elltG~~Pf~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         175 AVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILME---DIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             cCCccccchHHHHHhhCCCCCCCCCHHHHHHHhccC---CccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence            999999999999999999999776655544443332   2233567899999999999999999997     89999999


Q ss_pred             hhhhhccCC
Q psy3253         236 EFIQRHDTD  244 (251)
Q Consensus       236 p~~~~~~~~  244 (251)
                      |||...+|.
T Consensus       252 ~~~~~~~~~  260 (328)
T cd05593         252 SFFTGVNWQ  260 (328)
T ss_pred             CCcCCCCHH
Confidence            999886664

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1.9e-42  Score=297.35  Aligned_cols=205  Identities=26%  Similarity=0.453  Sum_probs=177.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+.++||||+++++++.++...|+||||+.+|+|.+++. ....+++..+..++.|++.||.|||++|++|||||     
T Consensus        85 l~~l~hp~Iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~-~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLk-----  158 (340)
T PTZ00426         85 LNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLR-RNKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLK-----  158 (340)
T ss_pred             HHhCCCCCCcceEEEEEeCCEEEEEEeCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCC-----
Confidence            356899999999999999999999999999999999997 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++.....   ......||+.|+|||++.+..++.
T Consensus       159 ----------------------------p~NILl~~~~~ikL~DFG~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~  207 (340)
T PTZ00426        159 ----------------------------PENLLLDKDGFIKMTDFGFAKVVDT---RTYTLCGTPEYIAPEILLNVGHGK  207 (340)
T ss_pred             ----------------------------HHHEEECCCCCEEEecCCCCeecCC---CcceecCChhhcCHHHHhCCCCCc
Confidence                                        8899999999999999999975432   123456889999999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~h  235 (251)
                      ++|+||+||++|+|++|..||.+.+.......+....   ...+..+++.+.++|.+||+.||++|+     +++|+++|
T Consensus       208 ~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~---~~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        208 AADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEGI---IYFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             cccccchhhHHHHHhcCCCCCCCCCHHHHHHHHhcCC---CCCCCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcC
Confidence            9999999999999999999998776655444444332   223566789999999999999999995     89999999


Q ss_pred             hhhhhccCCC
Q psy3253         236 EFIQRHDTDP  245 (251)
Q Consensus       236 p~~~~~~~~~  245 (251)
                      |||++.+|..
T Consensus       285 p~f~~~~~~~  294 (340)
T PTZ00426        285 PWFGNIDWVS  294 (340)
T ss_pred             CCcCCCCHHH
Confidence            9999887764

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=4e-42  Score=292.99  Aligned_cols=204  Identities=27%  Similarity=0.469  Sum_probs=175.9

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .+||||+++++++.+....|+||||+.+|+|.+++. ....+++..+..++.|++.||.|||++|++|||||        
T Consensus        53 ~~h~~iv~~~~~~~~~~~~~iv~Ey~~~g~L~~~i~-~~~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlk--------  123 (320)
T cd05590          53 RNHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQ-KSRRFDEARARFYAAEITSALMFLHDKGIIYRDLK--------  123 (320)
T ss_pred             cCCCchhceeeEEEcCCEEEEEEcCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCC--------
Confidence            379999999999999999999999999999999886 45679999999999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchh
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD  163 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  163 (251)
                                               |+||+++.++.++|+|||++..............|++.|+|||++.+..++.++|
T Consensus       124 -------------------------p~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  178 (320)
T cd05590         124 -------------------------LDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVD  178 (320)
T ss_pred             -------------------------HHHeEECCCCcEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCCCCCCccc
Confidence                                     8899999999999999999865432222333456899999999999888999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH------HHHhcChh
Q psy3253         164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA------SEMLNHEF  237 (251)
Q Consensus       164 vwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~------~evl~hp~  237 (251)
                      +||+||++|+|++|..||...+.......+.....   ..+..++.++.+++.+||+.||++|+++      +++++|||
T Consensus       179 iwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h~~  255 (320)
T cd05590         179 WWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEV---VYPTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPF  255 (320)
T ss_pred             hhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCC---CCCCCCCHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcCCC
Confidence            99999999999999999987776665555544322   2345679999999999999999999998      99999999


Q ss_pred             hhhccCC
Q psy3253         238 IQRHDTD  244 (251)
Q Consensus       238 ~~~~~~~  244 (251)
                      |+..+|+
T Consensus       256 f~~~~~~  262 (320)
T cd05590         256 FKELDWE  262 (320)
T ss_pred             cCCCCHH
Confidence            9987764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=3.7e-42  Score=293.54  Aligned_cols=206  Identities=30%  Similarity=0.493  Sum_probs=176.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||++++++|..+...|+||||+.+++|.+++. ....+.+..+..++.|++.||.|||++|++|||||     
T Consensus        54 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk-----  127 (323)
T cd05584          54 LEAVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMHLE-REGIFMEDTACFYLSEISLALEHLHQQGIIYRDLK-----  127 (323)
T ss_pred             HHhCCCCchhceeeEEecCCeEEEEEeCCCCchHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----
Confidence            457899999999999999999999999999999999986 45678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||+++.............|++.|+|||.+.+..++.
T Consensus       128 ----------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  179 (323)
T cd05584         128 ----------------------------PENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHGK  179 (323)
T ss_pred             ----------------------------HHHeEECCCCCEEEeeCcCCeecccCCCcccccCCCccccChhhccCCCCCC
Confidence                                        8899999999999999999865433222333446889999999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~h  235 (251)
                      ++||||+||++|+|++|..||...+.......+...   ....+..+++++.++|.+||+.||++||     +++++++|
T Consensus       180 ~~DiwslG~il~ell~G~~pf~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h  256 (323)
T cd05584         180 AVDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKG---KLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSH  256 (323)
T ss_pred             cceecccHHHHHHHhcCCCCCCCCCHHHHHHHHHcC---CCCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcC
Confidence            999999999999999999999876655544444333   2233566899999999999999999999     89999999


Q ss_pred             hhhhhccC
Q psy3253         236 EFIQRHDT  243 (251)
Q Consensus       236 p~~~~~~~  243 (251)
                      |||+...|
T Consensus       257 ~~~~~~~~  264 (323)
T cd05584         257 PFFRHVNW  264 (323)
T ss_pred             CCcCCCCH
Confidence            99987655

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0659|consensus

Probab=100.00  E-value=2.4e-42  Score=273.38  Aligned_cols=207  Identities=26%  Similarity=0.464  Sum_probs=175.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+.+.++|.....+.+|+||++. +|+..++.+...++...++.++.+++.||+|||++.|+|||+|     
T Consensus        55 Lqel~h~nIi~LiD~F~~~~~l~lVfEfm~t-dLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlK-----  128 (318)
T KOG0659|consen   55 LQELKHPNIIELIDVFPHKSNLSLVFEFMPT-DLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLK-----  128 (318)
T ss_pred             HHHccCcchhhhhhhccCCCceEEEEEeccc-cHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCC-----
Confidence            5789999999999999999999999999965 9999999888899999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |.|++++.+|.+||+|||+++.++.........+-|.+|+|||.+.+ ..|+
T Consensus       129 ----------------------------PnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg  180 (318)
T KOG0659|consen  129 ----------------------------PNNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYG  180 (318)
T ss_pred             ----------------------------ccceEEcCCCcEEeecccchhccCCCCcccccceeeeeccChHHhccchhcC
Confidence                                        88999999999999999999988766555555577999999999866 6689


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchh---hhhcCCCCCCC-CC---------------------CCCCCCHHHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRA---IFMIPTKPPPS-FR---------------------EPDVWTPEFIDF  214 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~---~~~~~~~~~~~-~~---------------------~~~~~~~~~~~l  214 (251)
                      ..+||||.||++.||+.|.+.|.+.+..+.   +......+.+. ++                     .....+++..||
T Consensus       181 ~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aas~d~ldL  260 (318)
T KOG0659|consen  181 TGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAASSDALDL  260 (318)
T ss_pred             CcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccccccccHHHHHH
Confidence            999999999999999999999976544433   33333322111 10                     112246778999


Q ss_pred             HHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         215 VSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       215 i~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +.+||.+||.+|+|+.|+++|+||+..
T Consensus       261 l~~m~~ynP~~Rita~qaL~~~yf~~~  287 (318)
T KOG0659|consen  261 LSKMLTYNPKKRITASQALKHPYFKSL  287 (318)
T ss_pred             HHhhhccCchhcccHHHHhcchhhhcC
Confidence            999999999999999999999999953

>KOG0597|consensus

Probab=100.00  E-value=1.3e-42  Score=299.01  Aligned_cols=207  Identities=31%  Similarity=0.597  Sum_probs=186.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+.++|||||.+++.|++..++++|+|||.| +|..++. .++.++|+.++.++++++.||.|||+.+|+|||+|     
T Consensus        55 ~r~lkHpniv~m~esfEt~~~~~vVte~a~g-~L~~il~-~d~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~k-----  127 (808)
T KOG0597|consen   55 LRSLKHPNIVEMLESFETSAHLWVVTEYAVG-DLFTILE-QDGKLPEEQVRAIAYDLVSALYYLHSNRILHRDMK-----  127 (808)
T ss_pred             HHhcCCcchhhHHHhhcccceEEEEehhhhh-hHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHhcCcccccCC-----
Confidence            3578999999999999999999999999976 9999997 57899999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||++.+.+++|++|||+|+..+..........|||.|||||...+.+|+.
T Consensus       128 ----------------------------PqniLl~~~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd~  179 (808)
T KOG0597|consen  128 ----------------------------PQNILLEKGGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEEQPYDH  179 (808)
T ss_pred             ----------------------------cceeeecCCCceeechhhhhhhcccCceeeeeccCcccccCHHHHcCCCccc
Confidence                                        9999999999999999999998776655566678999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      .+|+||+||++||+++|++||...........|...+.   ..|...+..+.+|++.+|.+||.+|.|..+++.|||.+.
T Consensus       180 ~sDlWslGcilYE~~~G~PPF~a~si~~Lv~~I~~d~v---~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~HpF~k~  256 (808)
T KOG0597|consen  180 TSDLWSLGCILYELYVGQPPFYARSITQLVKSILKDPV---KPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLGHPFWKG  256 (808)
T ss_pred             hhhHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCC---CCcccccHHHHHHHHHHhhcChhhcccHHHHhcChHHhh
Confidence            99999999999999999999987776666766666533   235678999999999999999999999999999999987


Q ss_pred             ccCCC
Q psy3253         241 HDTDP  245 (251)
Q Consensus       241 ~~~~~  245 (251)
                      .-..+
T Consensus       257 ~~~~~  261 (808)
T KOG0597|consen  257 KINIA  261 (808)
T ss_pred             hhhhh
Confidence            55444

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=9.9e-42  Score=291.02  Aligned_cols=205  Identities=29%  Similarity=0.495  Sum_probs=175.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...|+||||+.+++|..++.  ...+++..+..++.||+.||.|||++|++|||||      
T Consensus        57 ~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~~~--~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlk------  128 (324)
T cd05589          57 NSERHPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIH--TDVFSEPRAVFYAACVVLGLQYLHENKIVYRDLK------  128 (324)
T ss_pred             cccCCCChhceeeEEEcCCEEEEEEcCCCCCcHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCC------
Confidence            46789999999999999999999999999999998875  4679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.+||+|||++..............|++.|+|||.+.+..++.+
T Consensus       129 ---------------------------p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~  181 (324)
T cd05589         129 ---------------------------LDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYTRA  181 (324)
T ss_pred             ---------------------------HHHeEECCCCcEEeCcccCCccCCCCCCcccccccCccccCHhHhcCCCCCcc
Confidence                                       88999999999999999998654332233344568899999999998889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcCh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNHE  236 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~hp  236 (251)
                      +|+|||||++|+|++|..||.+.+.......+.....   ..+..+++.+.++|.+||+.||++||     +++++++||
T Consensus       182 ~DiwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~---~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~~  258 (324)
T cd05589         182 VDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIVNDEV---RYPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQP  258 (324)
T ss_pred             cchhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC---CCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhCC
Confidence            9999999999999999999987766555544433322   23566899999999999999999999     799999999


Q ss_pred             hhhhccCC
Q psy3253         237 FIQRHDTD  244 (251)
Q Consensus       237 ~~~~~~~~  244 (251)
                      ||+..+|.
T Consensus       259 ~f~~~~~~  266 (324)
T cd05589         259 FFRDINWD  266 (324)
T ss_pred             CcCCCCHH
Confidence            99876554

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=4.3e-42  Score=293.13  Aligned_cols=206  Identities=29%  Similarity=0.453  Sum_probs=176.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||+++++.+.++...|+||||+.+|+|..++. ....+++..+..++.||+.||.|||++|++|||||      
T Consensus        51 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~-~~~~~~~~~~~~~~~qi~~~l~~lH~~givH~dik------  123 (323)
T cd05575          51 KNVKHPFLVGLHYSFQTADKLYFVLDYVNGGELFFHLQ-RERSFPEPRARFYAAEIASALGYLHSLNIIYRDLK------  123 (323)
T ss_pred             hhCCCCCCCCeeEEEEeCCEEEEEEcCCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCC------
Confidence            56899999999999999999999999999999999887 45689999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.+||+|||++..............|++.|+|||++.+..++.+
T Consensus       124 ---------------------------p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  176 (323)
T cd05575         124 ---------------------------PENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDRT  176 (323)
T ss_pred             ---------------------------HHHeEECCCCcEEEeccCCCcccccCCCccccccCChhhcChhhhcCCCCCcc
Confidence                                       88999999999999999998654332223334568899999999998889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH----HHHhcChh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA----SEMLNHEF  237 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~----~evl~hp~  237 (251)
                      +|||||||++|+|++|..||...+.......+....   ...+..+++.+.++|.+||+.||++||++    .|+++|||
T Consensus       177 ~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~il~~~~  253 (323)
T cd05575         177 VDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNILNKP---LRLKPNISVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVF  253 (323)
T ss_pred             ccccccchhhhhhhcCCCCCCCCCHHHHHHHHHcCC---CCCCCCCCHHHHHHHHHHhhcCHHhCCCCCCCHHHHHcCCC
Confidence            999999999999999999998776555544443332   22345679999999999999999999987    69999999


Q ss_pred             hhhccCC
Q psy3253         238 IQRHDTD  244 (251)
Q Consensus       238 ~~~~~~~  244 (251)
                      |...+|+
T Consensus       254 ~~~~~~~  260 (323)
T cd05575         254 FSSINWD  260 (323)
T ss_pred             cCCCCHH
Confidence            9887664

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1.3e-41  Score=285.69  Aligned_cols=204  Identities=25%  Similarity=0.438  Sum_probs=165.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++||||+.+ +|.+++......+++..++.++.||+.||.|||++|++|||||     
T Consensus        57 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlk-----  130 (288)
T cd07871          57 LKNLKHANIVTLHDIIHTERCLTLVFEYLDS-DLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLK-----  130 (288)
T ss_pred             HHhCCCCCEeeEEEEEcCCCeEEEEEeCCCc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----
Confidence            3578999999999999999999999999975 9999987666678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.+||+|||++..............+++.|+|||.+.+ ..++
T Consensus       131 ----------------------------p~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  182 (288)
T cd07871         131 ----------------------------PQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYS  182 (288)
T ss_pred             ----------------------------HHHEEECCCCCEEECcCcceeeccCCCccccCceecccccChHHhcCCcccC
Confidence                                        88889988999999999998754333222334467889999998865 5688


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CCCC------------------------CCCCCCCCCCHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TKPP------------------------PSFREPDVWTPEFI  212 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~~~------------------------~~~~~~~~~~~~~~  212 (251)
                      .++|+||+||++|+|++|++||.+.+.......+.   ....                        +.......+++++.
T Consensus       183 ~~~DiwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (288)
T cd07871         183 TPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGI  262 (288)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCCCCHHHH
Confidence            99999999999999999999997655433222110   0000                        00001234678899


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +||.+||++||++|||++|+++||||
T Consensus       263 dll~~mL~~dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         263 DLLSSLLLYETKSRISAEAALRHSYF  288 (288)
T ss_pred             HHHHHhcCcCcccCCCHHHHhcCCCC
Confidence            99999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=3e-42  Score=294.34  Aligned_cols=206  Identities=29%  Similarity=0.506  Sum_probs=175.4

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni~   80 (251)
                      +.++||||+++++++.+....|+||||+.+|+|..++. ....+++..+..++.||+.||.|||+ .|++|||||     
T Consensus        50 ~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~-~~~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDik-----  123 (325)
T cd05594          50 QNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLS-RERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLK-----  123 (325)
T ss_pred             HhCCCCCCCceEEEEEcCCEEEEEEeCCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCC-----
Confidence            56799999999999999999999999999999998886 45679999999999999999999997 799999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++..............|++.|+|||++.+..++.
T Consensus       124 ----------------------------p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  175 (325)
T cd05594         124 ----------------------------LENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGR  175 (325)
T ss_pred             ----------------------------CCeEEECCCCCEEEecCCCCeecCCCCcccccccCCcccCCHHHHccCCCCC
Confidence                                        8899999999999999999865332222223346889999999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~h  235 (251)
                      ++||||+||++|+|++|..||.+.+.......+...   ....+..+++++.+++.+||+.||++|+     +++++++|
T Consensus       176 ~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~~~---~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  252 (325)
T cd05594         176 AVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILME---EIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQH  252 (325)
T ss_pred             ccccccccceeeeeccCCCCCCCCCHHHHHHHHhcC---CCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcC
Confidence            999999999999999999999776655544443332   2223566899999999999999999997     99999999


Q ss_pred             hhhhhccCC
Q psy3253         236 EFIQRHDTD  244 (251)
Q Consensus       236 p~~~~~~~~  244 (251)
                      |||+...|.
T Consensus       253 ~~~~~~~~~  261 (325)
T cd05594         253 KFFAGIVWQ  261 (325)
T ss_pred             CCcCCCCHH
Confidence            999986655

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=8.4e-42  Score=291.09  Aligned_cols=205  Identities=28%  Similarity=0.458  Sum_probs=176.8

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .+||||+++++++.++...|+||||+++|+|.+++. ....+++..+..++.||+.||.|||++|++|||||        
T Consensus        53 ~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDik--------  123 (321)
T cd05591          53 AKHPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQ-RSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLK--------  123 (321)
T ss_pred             cCCCCccceeeEEEcCCeEEEEEeCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC--------
Confidence            389999999999999999999999999999999886 45679999999999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchh
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD  163 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  163 (251)
                                               |+||+++.++.++|+|||++..............|++.|+|||++.+..++.++|
T Consensus       124 -------------------------p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  178 (321)
T cd05591         124 -------------------------LDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVD  178 (321)
T ss_pred             -------------------------HHHeEECCCCCEEEeecccceecccCCccccccccCccccCHHHHcCCCCCCccc
Confidence                                     8899999999999999999875433323334456889999999999888999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-------CHHHHhcCh
Q psy3253         164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-------TASEMLNHE  236 (251)
Q Consensus       164 vwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-------s~~evl~hp  236 (251)
                      |||+||++|+|++|+.||...+.......+....   ...+..++.++.+++.+||+.||++|+       +++++++||
T Consensus       179 vwslG~il~el~tg~~Pf~~~~~~~~~~~i~~~~---~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~hp  255 (321)
T cd05591         179 WWALGVLMYEMMAGQPPFEADNEDDLFESILHDD---VLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHP  255 (321)
T ss_pred             eechhHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---CCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcCC
Confidence            9999999999999999998776665555444432   223455789999999999999999999       999999999


Q ss_pred             hhhhccCCC
Q psy3253         237 FIQRHDTDP  245 (251)
Q Consensus       237 ~~~~~~~~~  245 (251)
                      ||+..+|+.
T Consensus       256 ~~~~~~~~~  264 (321)
T cd05591         256 FFKEIDWVL  264 (321)
T ss_pred             ccCCCCHHH
Confidence            999877764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.4e-41  Score=284.31  Aligned_cols=209  Identities=28%  Similarity=0.450  Sum_probs=174.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      |++++||||+++.+++..+...|+||||+++|+|.+++..   ....+++..+..++.||+.||.|||++|++|||||  
T Consensus        47 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk--  124 (280)
T cd05608          47 LAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLK--  124 (280)
T ss_pred             HHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC--
Confidence            3578999999999999999999999999999999988742   23568999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                     |+||+++.++.++|+|||.+..............+++.|+|||.+.+..
T Consensus       125 -------------------------------p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~  173 (280)
T cd05608         125 -------------------------------PENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEE  173 (280)
T ss_pred             -------------------------------HHHEEECCCCCEEEeeCccceecCCCCccccccCCCcCccCHHHhcCCC
Confidence                                           8899998889999999999976543333333446788999999999989


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchh----hhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----C
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRA----IFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----T  228 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s  228 (251)
                      ++.++|+||+||++|++++|+.||........    ...+...   ....+..+++++.+++.+||+.||++||     +
T Consensus       174 ~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~  250 (280)
T cd05608         174 YDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILND---SVTYPDKFSPASKSFCEALLAKDPEKRLGFRDGN  250 (280)
T ss_pred             CCccccHHHHHHHHHHHHhCCCCCCCCCcchhHHHHHHhhccc---CCCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCC
Confidence            99999999999999999999999965432211    1111111   2233456899999999999999999999     8


Q ss_pred             HHHHhcChhhhhccCCC
Q psy3253         229 ASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       229 ~~evl~hp~~~~~~~~~  245 (251)
                      ++|+++||||+...|..
T Consensus       251 ~~~~l~h~~~~~~~~~~  267 (280)
T cd05608         251 CDGLRTHPLFRDLNWRQ  267 (280)
T ss_pred             HHHHhcChhhhcCCHhH
Confidence            89999999999987764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=1.7e-41  Score=288.69  Aligned_cols=205  Identities=25%  Similarity=0.448  Sum_probs=174.2

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcc
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV   82 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~   82 (251)
                      .++||||+++++++.++++.|+||||+.+|+|.+++. ....+++..+..++.|++.||.|||++|++|||||       
T Consensus        52 ~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~i~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlk-------  123 (316)
T cd05620          52 AWENPFLTHLYCTFQTKEHLFFVMEFLNGGDLMFHIQ-DKGRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLK-------  123 (316)
T ss_pred             ccCCCCccCeeEEEEeCCEEEEEECCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC-------
Confidence            3589999999999999999999999999999999886 45679999999999999999999999999999988       


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcch
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA  162 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  162 (251)
                                                |+||+++.++.++|+|||++..............|++.|+|||++.+..++.++
T Consensus       124 --------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  177 (316)
T cd05620         124 --------------------------LDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSV  177 (316)
T ss_pred             --------------------------HHHeEECCCCCEEeCccCCCeecccCCCceeccCCCcCccCHHHHcCCCCCccc
Confidence                                      889999989999999999986432222233345688999999999988999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH-HHHhcChhhhhc
Q psy3253         163 DMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA-SEMLNHEFIQRH  241 (251)
Q Consensus       163 DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~-~evl~hp~~~~~  241 (251)
                      |+||+||++|+|++|..||.+.+.......+....   ...+..++.++.+++.+||+.||++|+++ +++++||||+..
T Consensus       178 DiwslGvil~el~~g~~Pf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~~h~~f~~~  254 (316)
T cd05620         178 DWWSFGVLLYEMLIGQSPFHGDDEDELFESIRVDT---PHYPRWITKESKDILEKLFERDPTRRLGVVGNIRGHPFFKTI  254 (316)
T ss_pred             chhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC---CCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHcCCCcCCC
Confidence            99999999999999999998766555444443322   12245578999999999999999999998 689999999887


Q ss_pred             cCC
Q psy3253         242 DTD  244 (251)
Q Consensus       242 ~~~  244 (251)
                      +|.
T Consensus       255 ~~~  257 (316)
T cd05620         255 NWT  257 (316)
T ss_pred             CHH
Confidence            664

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0600|consensus

Probab=100.00  E-value=6.2e-42  Score=291.48  Aligned_cols=206  Identities=26%  Similarity=0.469  Sum_probs=172.6

Q ss_pred             CCCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++|+||||+++.++....  ..+|||||||+. +|.-++....-.|++.+++.+++||+.||.|+|.+|++|||||   
T Consensus       170 Lr~l~HpNIikL~eivt~~~~~siYlVFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK---  245 (560)
T KOG0600|consen  170 LRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIK---  245 (560)
T ss_pred             HHhcCCCcccceeeEEEecCCceEEEEEecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcCeeecccc---
Confidence            5789999999999988766  689999999987 9999998556789999999999999999999999999999999   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-cccccccccccccccccc-C
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAPEVIQE-I  156 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~-~  156 (251)
                                                    .+||+++.+|.+||+|||+|+.+...... ....+-|.+|+|||.+.+ .
T Consensus       246 ------------------------------~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t  295 (560)
T KOG0600|consen  246 ------------------------------GSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGAT  295 (560)
T ss_pred             ------------------------------ccceEEcCCCCEEeccccceeeccCCCCcccccceEEeeccChHHhcCCc
Confidence                                          88999999999999999999866543322 344567899999999976 5


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhh---cCCCCCCCCCC-----------------------CCCCCHH
Q psy3253         157 GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM---IPTKPPPSFRE-----------------------PDVWTPE  210 (251)
Q Consensus       157 ~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~---~~~~~~~~~~~-----------------------~~~~~~~  210 (251)
                      .|+.++|+||.|||+.||++|++.|++.+..+....   +...+....+.                       ...++..
T Consensus       296 ~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~  375 (560)
T KOG0600|consen  296 SYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFKDFPAS  375 (560)
T ss_pred             ccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHHhccCCHH
Confidence            699999999999999999999999988766554433   32222211111                       1335788


Q ss_pred             HHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         211 FIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       211 ~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ..+|+..||..||.+|.|+.++|+|+||..
T Consensus       376 ~l~Ll~~lL~ldP~kR~tA~~aL~seyF~t  405 (560)
T KOG0600|consen  376 ALDLLEKLLSLDPDKRGTASSALQSEYFTT  405 (560)
T ss_pred             HHHHHHHHhccCccccccHHHHhcCccccc
Confidence            999999999999999999999999999943

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.7e-42  Score=293.72  Aligned_cols=207  Identities=28%  Similarity=0.494  Sum_probs=177.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...|+||||+++|+|.+++. ....+++..++.++.||+.||.|||++|++|||||     
T Consensus        52 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----  125 (318)
T cd05582          52 LAEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLS-KEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLK-----  125 (318)
T ss_pred             HHhCCCCCcccEEEEEEcCCEEEEEEcCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC-----
Confidence            457899999999999999999999999999999999986 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++..............|++.|+|||.+.+..++.
T Consensus       126 ----------------------------p~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~  177 (318)
T cd05582         126 ----------------------------PENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQ  177 (318)
T ss_pred             ----------------------------HHHeEECCCCcEEEeeccCCcccCCCCCceecccCChhhcCHHHHcCCCCCC
Confidence                                        8899999999999999999876543323334456888999999998888899


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl~h  235 (251)
                      ++|||||||++|+|++|+.||...+.......+...   ....+..+++.+.+++.+||+.||++||+     ++++++|
T Consensus       178 ~~DiwslG~il~el~tg~~p~~~~~~~~~~~~i~~~---~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~~~~~~~~~~  254 (318)
T cd05582         178 SADWWSFGVLMFEMLTGSLPFQGKDRKETMTMILKA---KLGMPQFLSPEAQSLLRALFKRNPANRLGAGPDGVEEIKRH  254 (318)
T ss_pred             ccceeccceEeeeeccCCCCCCCCCHHHHHHHHHcC---CCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhCC
Confidence            999999999999999999999877665555444333   22335668999999999999999999999     7889999


Q ss_pred             hhhhhccCC
Q psy3253         236 EFIQRHDTD  244 (251)
Q Consensus       236 p~~~~~~~~  244 (251)
                      |||+..+|.
T Consensus       255 ~~~~~~~~~  263 (318)
T cd05582         255 PFFSTIDWN  263 (318)
T ss_pred             CCcCCCCHH
Confidence            999877654

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=2.3e-41  Score=286.03  Aligned_cols=210  Identities=24%  Similarity=0.423  Sum_probs=166.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...|+||||+. ++|.+++......+++..++.++.|++.||.|||++|++|||||     
T Consensus        57 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlk-----  130 (303)
T cd07869          57 LKGLKHANIVLLHDIIHTKETLTLVFEYVH-TDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLK-----  130 (303)
T ss_pred             HhhCCCCCcCeEEEEEecCCeEEEEEECCC-cCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----
Confidence            457899999999999999999999999995 68888887666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.+||+|||++..............+++.|+|||++.+ ..++
T Consensus       131 ----------------------------p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  182 (303)
T cd07869         131 ----------------------------PQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYS  182 (303)
T ss_pred             ----------------------------HHHEEECCCCCEEECCCCcceeccCCCccCCCCcccCCCCChHHHcCCCCCC
Confidence                                        88889988999999999998654332222334557889999999865 4578


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchh-hhh---cCCCC---------------CCCCC-----------CCCCCCH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRA-IFM---IPTKP---------------PPSFR-----------EPDVWTP  209 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~-~~~---~~~~~---------------~~~~~-----------~~~~~~~  209 (251)
                      .++|+||+||++|+|++|..||.+...... ...   .....               +..+.           .....++
T Consensus       183 ~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (303)
T cd07869         183 TCLDMWGVGCIFVEMIQGVAAFPGMKDIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVN  262 (303)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHhhccCCCh
Confidence            899999999999999999999976433211 100   00000               00000           0112457


Q ss_pred             HHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         210 EFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       210 ~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      ++.+|+.+||+.||++|||++|+++||||+.....
T Consensus       263 ~~~dli~~mL~~dp~~R~s~~~~l~h~~f~~~~~~  297 (303)
T cd07869         263 HAEDLASKLLQCFPKNRLSAQAALSHEYFSDLPPR  297 (303)
T ss_pred             HHHHHHHHHhccCchhccCHHHHhcCcccccCChh
Confidence            88999999999999999999999999999987643

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG4717|consensus

Probab=100.00  E-value=1e-41  Score=290.99  Aligned_cols=210  Identities=26%  Similarity=0.500  Sum_probs=186.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+-++|||||++|++..+...+|||+|+-++|+|.+|+.+....+.+..++.++.||+.|+.|+|+..++|||+|     
T Consensus        71 MKLVQHpNiVRLYEViDTQTKlyLiLELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLK-----  145 (864)
T KOG4717|consen   71 MKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLK-----  145 (864)
T ss_pred             HHHhcCcCeeeeeehhcccceEEEEEEecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCC-----
Confidence            567899999999999999999999999999999999998888999999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceec-CCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL-NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~-~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+|+++ .+-|-+||.|||++-.+... .+..+..|+..|.|||++.+..|+
T Consensus       146 ----------------------------PENVVFFEKlGlVKLTDFGFSNkf~PG-~kL~TsCGSLAYSAPEILLGDsYD  196 (864)
T KOG4717|consen  146 ----------------------------PENVVFFEKLGLVKLTDFGFSNKFQPG-KKLTTSCGSLAYSAPEILLGDSYD  196 (864)
T ss_pred             ----------------------------cceeEEeeecCceEeeeccccccCCCc-chhhcccchhhccCchhhhcCccC
Confidence                                        555543 45678999999999776544 445566788899999999998886


Q ss_pred             c-chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         160 C-VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       160 ~-~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      . ++||||||+++|.|++|++||+..+..+...++...   .+..|..++.++++||..||+.||++|+|.+||.+++|+
T Consensus       197 APAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDC---KYtvPshvS~eCrdLI~sMLvRdPkkRAslEeI~s~~Wl  273 (864)
T KOG4717|consen  197 APAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDC---KYTVPSHVSKECRDLIQSMLVRDPKKRASLEEIVSTSWL  273 (864)
T ss_pred             CcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcc---cccCchhhhHHHHHHHHHHHhcCchhhccHHHHhccccc
Confidence            4 799999999999999999999988777777666654   667788899999999999999999999999999999999


Q ss_pred             hhccCCCCC
Q psy3253         239 QRHDTDPSQ  247 (251)
Q Consensus       239 ~~~~~~~~~  247 (251)
                      +..+...+.
T Consensus       274 q~~D~~~sT  282 (864)
T KOG4717|consen  274 QAGDRGLST  282 (864)
T ss_pred             cCCCCCccc
Confidence            998876543

>KOG0589|consensus

Probab=100.00  E-value=6.6e-42  Score=292.55  Aligned_cols=206  Identities=33%  Similarity=0.581  Sum_probs=186.7

Q ss_pred             CCCCCCCccceeeeeEeeCCe-EEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTD-LWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~-~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      ++++.|||||.+.++|..++. +|++|+||+||+|.+.+...+ ..|+++.+..|+.|++.|+.|||+++|+|||||   
T Consensus        57 is~~~hP~iv~y~ds~~~~~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK---  133 (426)
T KOG0589|consen   57 LSKLLHPNIVEYKDSFEEDGQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLK---  133 (426)
T ss_pred             HHhccCCCeeeeccchhcCCceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccch---
Confidence            367999999999999998887 999999999999999997444 779999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                    +.||++++++.++|+|||+|+.............||+.|++||++.+.+|
T Consensus       134 ------------------------------~~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~pY  183 (426)
T KOG0589|consen  134 ------------------------------CANIFLTKDKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDIPY  183 (426)
T ss_pred             ------------------------------hhhhhccccCceeecchhhhhhcCCchhhhheecCCCcccCHHHhCCCCC
Confidence                                          88999999999999999999988776556777889999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      ..++|+|||||++|||++-+++|...+....+..+.....  .+.+..++.+++.+|+.||..+|+.||++.++|.+|..
T Consensus       184 n~KSDiWsLGC~~yEm~~lk~aF~a~~m~~Li~ki~~~~~--~Plp~~ys~el~~lv~~~l~~~P~~RPsa~~LL~~P~l  261 (426)
T KOG0589|consen  184 NEKSDIWSLGCCLYEMCTLKPAFKASNMSELILKINRGLY--SPLPSMYSSELRSLVKSMLRKNPEHRPSALELLRRPHL  261 (426)
T ss_pred             CccCcchhhcchHHHHHhcccccCccchHHHHHHHhhccC--CCCCccccHHHHHHHHHHhhcCCccCCCHHHHhhChhh
Confidence            9999999999999999999999998888888777766542  33477889999999999999999999999999999988


Q ss_pred             hhc
Q psy3253         239 QRH  241 (251)
Q Consensus       239 ~~~  241 (251)
                      ++.
T Consensus       262 ~~~  264 (426)
T KOG0589|consen  262 LRY  264 (426)
T ss_pred             hhH
Confidence            753

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=1.7e-41  Score=284.48  Aligned_cols=211  Identities=24%  Similarity=0.354  Sum_probs=173.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.+++..++||||+.+|+|.+++... ...+++..+..++.|++.||.|||++|++|||||    
T Consensus        54 l~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dik----  129 (285)
T cd05631          54 LEKVNSRFVVSLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLK----  129 (285)
T ss_pred             HHhcCCCcEEEEEEEEccCCeEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCC----
Confidence            35789999999999999999999999999999999887533 3468999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||++....... ......|+..|+|||++.+..++
T Consensus       130 -----------------------------p~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~  179 (285)
T cd05631         130 -----------------------------PENILLDDRGHIRISDLGLAVQIPEGE-TVRGRVGTVGYMAPEVINNEKYT  179 (285)
T ss_pred             -----------------------------HHHEEECCCCCEEEeeCCCcEEcCCCC-eecCCCCCCCccCHhhhcCCCCC
Confidence                                         889999889999999999987643221 22334678999999999998999


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC-CCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEML  233 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl  233 (251)
                      .++||||+||++|+|++|+.||...........+.. ........+..+++++.+|+.+||+.||++||+     ++|++
T Consensus       180 ~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~  259 (285)
T cd05631         180 FSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVK  259 (285)
T ss_pred             cccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhcccccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHh
Confidence            999999999999999999999976543211111110 011122335668999999999999999999997     89999


Q ss_pred             cChhhhhccCCC
Q psy3253         234 NHEFIQRHDTDP  245 (251)
Q Consensus       234 ~hp~~~~~~~~~  245 (251)
                      +||||+..+|..
T Consensus       260 ~h~~~~~~~~~~  271 (285)
T cd05631         260 QHPIFKNINFKR  271 (285)
T ss_pred             cCHhhcCCCHHH
Confidence            999999887754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=2.8e-41  Score=287.32  Aligned_cols=204  Identities=28%  Similarity=0.495  Sum_probs=174.3

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      ++||||+++++++.+....++||||+.+|+|.+++. ....+++.++..++.|++.||.|||++|++|||||        
T Consensus        53 ~~hp~iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~-~~~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdik--------  123 (316)
T cd05619          53 WEHPFLTHLYCTFQTKENLFFVMEYLNGGDLMFHIQ-SCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLK--------  123 (316)
T ss_pred             cCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCC--------
Confidence            589999999999999999999999999999999987 44678999999999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchh
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD  163 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  163 (251)
                                               |+||+++.++.++|+|||++..............|+..|+|||++.+..++.++|
T Consensus       124 -------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  178 (316)
T cd05619         124 -------------------------LDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVD  178 (316)
T ss_pred             -------------------------HHHEEECCCCCEEEccCCcceECCCCCCceeeecCCccccCHHHHcCCCCCchhh
Confidence                                     8899999999999999999865332222333456789999999999888999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH-HHhcChhhhhcc
Q psy3253         164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS-EMLNHEFIQRHD  242 (251)
Q Consensus       164 vwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~-evl~hp~~~~~~  242 (251)
                      +||+||++|+|++|..||.+.+.......+....+ .  .+..++.++.+++.+||+.||++||++. ++++||||+..+
T Consensus       179 vwslG~il~el~~G~~pf~~~~~~~~~~~i~~~~~-~--~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~h~~~~~~~  255 (316)
T cd05619         179 WWSFGVLLYEMLIGQSPFHGHDEEELFQSIRMDNP-C--YPRWLTREAKDILVKLFVREPERRLGVKGDIRQHPFFREID  255 (316)
T ss_pred             hhhHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC-C--CCccCCHHHHHHHHHHhccCHhhcCCChHHHHcCcccCCCC
Confidence            99999999999999999987766554444433221 1  2455789999999999999999999996 999999999877


Q ss_pred             CC
Q psy3253         243 TD  244 (251)
Q Consensus       243 ~~  244 (251)
                      |.
T Consensus       256 ~~  257 (316)
T cd05619         256 WS  257 (316)
T ss_pred             HH
Confidence            65

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=2.9e-41  Score=287.21  Aligned_cols=204  Identities=26%  Similarity=0.472  Sum_probs=174.7

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .+||||+++++++..+...|+||||+.+|+|.+++. ....+++..+..++.|++.||.|||++|++|||||        
T Consensus        53 ~~hp~i~~~~~~~~~~~~~~lv~e~~~gg~L~~~~~-~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlk--------  123 (316)
T cd05592          53 WEHPFLTHLFCTFQTKEHLFFVMEYLNGGDLMFHIQ-SSGRFDEARARFYAAEIICGLQFLHKKGIIYRDLK--------  123 (316)
T ss_pred             cCCCCccceeeEEEcCCEEEEEEcCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCC--------
Confidence            589999999999999999999999999999999987 45679999999999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchh
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD  163 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  163 (251)
                                               |+||+++.++.++|+|||++..............||+.|+|||.+.+..++.++|
T Consensus       124 -------------------------p~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  178 (316)
T cd05592         124 -------------------------LDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVD  178 (316)
T ss_pred             -------------------------HHHeEECCCCCEEEccCcCCeECCCCCCccccccCCccccCHHHHcCCCCCCccc
Confidence                                     8899999999999999999975433323334456899999999999888999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH-HHHhcChhhhhcc
Q psy3253         164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA-SEMLNHEFIQRHD  242 (251)
Q Consensus       164 vwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~-~evl~hp~~~~~~  242 (251)
                      |||+||++|+|++|..||.+.+.......+....   ...+..++.++.+++.+||+.||++||++ +++++||||+..+
T Consensus       179 vwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~h~~~~~~~  255 (316)
T cd05592         179 WWSFGVLLYEMLIGQSPFHGEDEDELFDSILNDR---PHFPRWISKEAKDCLSKLFERDPTKRLGVDGDIRQHPFFRGID  255 (316)
T ss_pred             chhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCC---CCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHcCcccCCCC
Confidence            9999999999999999998776655554443322   12355678999999999999999999986 5889999998876


Q ss_pred             CC
Q psy3253         243 TD  244 (251)
Q Consensus       243 ~~  244 (251)
                      |.
T Consensus       256 ~~  257 (316)
T cd05592         256 WE  257 (316)
T ss_pred             HH
Confidence            64

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=2.9e-41  Score=287.44  Aligned_cols=203  Identities=29%  Similarity=0.485  Sum_probs=175.0

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||||+++++++.+....|+||||+.+|+|.+++. +...+++..+..++.|++.||.|||++|++|||||         
T Consensus        54 ~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlk---------  123 (318)
T cd05570          54 KHPFLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQ-RSGRFDEPRARFYAAEIVLGLQFLHERGIIYRDLK---------  123 (318)
T ss_pred             CCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCC---------
Confidence            79999999999999999999999999999999886 45689999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhH
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM  164 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  164 (251)
                                              |+||+++.++.++|+|||++..............+++.|+|||++.+..++.++|+
T Consensus       124 ------------------------p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di  179 (318)
T cd05570         124 ------------------------LDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDW  179 (318)
T ss_pred             ------------------------HHHeEECCCCcEEecccCCCeecCcCCCcccceecCccccCHHHhcCCCCCcchhh
Confidence                                    88999999999999999998653322223334457889999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH-----HHHhcChhhh
Q psy3253         165 WSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA-----SEMLNHEFIQ  239 (251)
Q Consensus       165 wslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~-----~evl~hp~~~  239 (251)
                      ||+||++|+|++|..||.+.+.......+....   ...+..++.++.++|.+||..||++|||+     .++++||||+
T Consensus       180 wslGvil~~l~~G~~pf~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~~~~~  256 (318)
T cd05570         180 WALGVLLYEMLAGQSPFEGDDEDELFQSILEDE---VRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFR  256 (318)
T ss_pred             hhHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCC---CCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcCCCcC
Confidence            999999999999999998766555544443332   22355679999999999999999999999     9999999999


Q ss_pred             hccCC
Q psy3253         240 RHDTD  244 (251)
Q Consensus       240 ~~~~~  244 (251)
                      ..+|.
T Consensus       257 ~~~~~  261 (318)
T cd05570         257 EIDWD  261 (318)
T ss_pred             CCCHH
Confidence            87774

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.1e-41  Score=290.04  Aligned_cols=207  Identities=28%  Similarity=0.475  Sum_probs=174.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...|+||||+++|+|.+++. ....+++..++.++.|++.||.|||++|++|||||     
T Consensus        55 l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~-~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk-----  128 (333)
T cd05600          55 LTTTKSEWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLN-NLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLK-----  128 (333)
T ss_pred             HHhCCCCCCccEEEEEEcCCEEEEEEeCCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----
Confidence            356789999999999999999999999999999999997 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.+||+|||++.....   ......|++.|+|||++.+..++.
T Consensus       129 ----------------------------p~Nil~~~~~~~kL~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~  177 (333)
T cd05600         129 ----------------------------PENFLIDASGHIKLTDFGLSKGIVT---YANSVVGSPDYMAPEVLRGKGYDF  177 (333)
T ss_pred             ----------------------------HHHEEECCCCCEEEEeCcCCccccc---ccCCcccCccccChhHhcCCCCCC
Confidence                                        8899999999999999999975443   223456889999999999889999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-----CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++||||+||++|+|++|..||...+.......+....     +........+++++.+++.+||..+|++||+++|+++|
T Consensus       178 ~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         178 TVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             ccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            9999999999999999999998766554433222111     10100112568999999999999999999999999999


Q ss_pred             hhhhhccCC
Q psy3253         236 EFIQRHDTD  244 (251)
Q Consensus       236 p~~~~~~~~  244 (251)
                      |||+..+|+
T Consensus       258 ~~~~~~~~~  266 (333)
T cd05600         258 PFFKEVDWN  266 (333)
T ss_pred             cccCCCCHH
Confidence            999987653

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0610|consensus

Probab=100.00  E-value=3.7e-41  Score=280.90  Aligned_cols=211  Identities=28%  Similarity=0.463  Sum_probs=175.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~-~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |+.++||.+.+||..|+.+...|++||||.||+|..+.+. .+..|++..++.++.+++.||+|||-.|||+||||||||
T Consensus       131 L~~lDHPFlPTLYa~fet~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENI  210 (459)
T KOG0610|consen  131 LSLLDHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENI  210 (459)
T ss_pred             HHhcCCCccchhhheeeccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCccee
Confidence            4679999999999999999999999999999999988863 346799999999999999999999999999999995555


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccC---------------------------
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT---------------------------  132 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~---------------------------  132 (251)
                      ||+                                 .+|++.|+||.++....                           
T Consensus       211 Lvr---------------------------------edGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~  257 (459)
T KOG0610|consen  211 LVR---------------------------------EDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSC  257 (459)
T ss_pred             EEe---------------------------------cCCcEEeeeccccccCCCCCeeeccCCCCCCCCCcccccccccc
Confidence            555                                 44444444444442110                           


Q ss_pred             -----------------------------cccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCC
Q psy3253         133 -----------------------------DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD  183 (251)
Q Consensus       133 -----------------------------~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~  183 (251)
                                                   ....+....+||-.|.|||++.+..-+.++|=|+|||++|||+.|..||.+
T Consensus       258 f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG  337 (459)
T KOG0610|consen  258 FSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKG  337 (459)
T ss_pred             cccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCC
Confidence                                         011233445688899999999999999999999999999999999999999


Q ss_pred             CCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC----HHHHhcChhhhhccCCC
Q psy3253         184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT----ASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps----~~evl~hp~~~~~~~~~  245 (251)
                      .+.......+..... .+......+.+++|||.++|.+||++|..    ++||-+||||+..+|+.
T Consensus       338 ~~~~~Tl~NIv~~~l-~Fp~~~~vs~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gVnWaL  402 (459)
T KOG0610|consen  338 SNNKETLRNIVGQPL-KFPEEPEVSSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGVNWAL  402 (459)
T ss_pred             CCchhhHHHHhcCCC-cCCCCCcchhHHHHHHHHHhccChhhhhccccchHHhhcCccccCCChhh
Confidence            888888877766644 33333467899999999999999999987    99999999999999974

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=2.4e-41  Score=289.26  Aligned_cols=203  Identities=28%  Similarity=0.503  Sum_probs=169.6

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||||++++++|.+....|+||||+++|+|.+++. ....+++..++.++.|++.||.|||++|++|||||         
T Consensus        54 ~hp~Iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~-~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk---------  123 (329)
T cd05588          54 NHPFLVGLHSCFQTESRLFFVIEFVSGGDLMFHMQ-RQRKLPEEHARFYSAEISLALNFLHERGIIYRDLK---------  123 (329)
T ss_pred             CCCCCCceEEEEEcCCEEEEEEeCCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC---------
Confidence            79999999999999999999999999999998886 45789999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhH
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM  164 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  164 (251)
                                              |+||+++.++.++|+|||+++.............||+.|+|||++.+..++.++|+
T Consensus       124 ------------------------p~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  179 (329)
T cd05588         124 ------------------------LDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDW  179 (329)
T ss_pred             ------------------------HHHeEECCCCCEEECcCccccccccCCCccccccCCccccCHHHHcCCCCCCccce
Confidence                                    88999988999999999998643222223334568899999999999889999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCcc--------h-hhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC------H
Q psy3253         165 WSLGITALEMAEGKPPYGDIHPM--------R-AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT------A  229 (251)
Q Consensus       165 wslG~~l~~l~~g~~p~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps------~  229 (251)
                      ||+||++|++++|..||......        . ....+...   ....+..++..+.+++.+||+.||++|++      +
T Consensus       180 wslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~  256 (329)
T cd05588         180 WALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEK---QIRIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGF  256 (329)
T ss_pred             echHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcC---CCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCH
Confidence            99999999999999999532111        1 11112221   22345678999999999999999999987      7


Q ss_pred             HHHhcChhhhhccCC
Q psy3253         230 SEMLNHEFIQRHDTD  244 (251)
Q Consensus       230 ~evl~hp~~~~~~~~  244 (251)
                      +++++||||+..+|.
T Consensus       257 ~~i~~hp~~~~~~~~  271 (329)
T cd05588         257 RDIKSHPFFRNIDWD  271 (329)
T ss_pred             HHHhcCCCCCCCCHH
Confidence            899999999887664

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=4.1e-41  Score=291.52  Aligned_cols=209  Identities=29%  Similarity=0.493  Sum_probs=171.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++.+.++...|+||||+.||+|.+++. ....+++..++.++.|++.||.|||++||+|||||      
T Consensus        56 ~~~~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~-~~~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlK------  128 (363)
T cd05628          56 VEADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLM-KKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIK------  128 (363)
T ss_pred             HhCCCCCcceEEEEEecCCeEEEEEcCCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCC------
Confidence            56899999999999999999999999999999999997 45689999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-------------------------
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-------------------------  136 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-------------------------  136 (251)
                                                 |+||+++.++.++|+|||+++.......                         
T Consensus       129 ---------------------------p~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (363)
T cd05628         129 ---------------------------PDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRK  181 (363)
T ss_pred             ---------------------------HHHeEECCCCCEEEeeccCcccccccccccccccccccccccccccccccccc
Confidence                                       8899999999999999999864321100                         


Q ss_pred             ----------cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCC
Q psy3253         137 ----------KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPD  205 (251)
Q Consensus       137 ----------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~  205 (251)
                                ......||+.|+|||++.+..++.++|+||+||++|+|++|..||.+.+.......+... ....+....
T Consensus       182 ~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~  261 (363)
T cd05628         182 AETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNWKETLIFPPEV  261 (363)
T ss_pred             cchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCcCcccCCCcC
Confidence                      011246899999999999889999999999999999999999999877665554444321 122222233


Q ss_pred             CCCHHHHHHHHHhhhcCcC---ccCCHHHHhcChhhhhccCCC
Q psy3253         206 VWTPEFIDFVSRCLVKNPE---ERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       206 ~~~~~~~~li~~~l~~~p~---~Rps~~evl~hp~~~~~~~~~  245 (251)
                      .+++++.+++.+|+. +|+   .||+++|+++||||+..+|+.
T Consensus       262 ~~s~~~~~li~~l~~-~~~~r~~r~~~~ei~~hp~f~~~~~~~  303 (363)
T cd05628         262 PISEKAKDLILRFCC-EWEHRIGAPGVEEIKTNPFFEGVDWEH  303 (363)
T ss_pred             CCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhCCCCCCCCCHHH
Confidence            478999999999765 444   458999999999999888764

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0579|consensus

Probab=100.00  E-value=1.4e-41  Score=296.17  Aligned_cols=211  Identities=45%  Similarity=0.896  Sum_probs=193.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |..++||+||++++.|...+.++++.|||.||-....+-.-+..+.+.++..+++|++.||.|||+++|||||+|     
T Consensus        83 La~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLK-----  157 (1187)
T KOG0579|consen   83 LAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLK-----  157 (1187)
T ss_pred             hhcCCChHHHHHHHHHhccCceEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhhhcc-----
Confidence            467899999999999999999999999999999999887778899999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc-----c
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----E  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~  155 (251)
                                                  ..||+++-+|.++|+|||.+-.......+...+.|||+|||||+..     .
T Consensus       158 ----------------------------AGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD  209 (1187)
T KOG0579|consen  158 ----------------------------AGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKD  209 (1187)
T ss_pred             ----------------------------ccceEEEecCcEeeecccccccchhHHhhhccccCCcccccchheeeccccC
Confidence                                        7788888899999999999876555555677889999999999873     5


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .+|+.++||||||+++.+|..+.+|....+++..+..+....++.+..|..|+..|.||+++||..||..||+++++++|
T Consensus       210 ~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVllKiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~H  289 (1187)
T KOG0579|consen  210 QPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLKH  289 (1187)
T ss_pred             CCchhhhhHHhhhhHHHHHhccCCCccccchHHHHHHHhhcCCCcccCcchhhhHHHHHHHHHHhcCCccCCCHHHHhhC
Confidence            77999999999999999999999999999999999889888888888999999999999999999999999999999999


Q ss_pred             hhhhhccCC
Q psy3253         236 EFIQRHDTD  244 (251)
Q Consensus       236 p~~~~~~~~  244 (251)
                      |||+..+..
T Consensus       290 pfv~~~~Sn  298 (1187)
T KOG0579|consen  290 PFVQNAPSN  298 (1187)
T ss_pred             cccccCCcc
Confidence            999976543

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=2.3e-41  Score=288.83  Aligned_cols=206  Identities=28%  Similarity=0.444  Sum_probs=175.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||+++++++...+..|+||||+.+|+|.+++. ....+.+..++.++.||+.||.|||++|++|||||      
T Consensus        51 ~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlk------  123 (325)
T cd05602          51 KNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQ-RERCFLEPRARFYAAEIASALGYLHSLNIVYRDLK------  123 (325)
T ss_pred             HhCCCCCCCceeEEEEcCCeEEEEEeCCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC------
Confidence            46899999999999999999999999999999999987 45678999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||++..............|++.|+|||++.+..++.+
T Consensus       124 ---------------------------p~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  176 (325)
T cd05602         124 ---------------------------PENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRT  176 (325)
T ss_pred             ---------------------------HHHeEECCCCCEEEccCCCCcccccCCCCcccccCCccccCHHHHcCCCCCCc
Confidence                                       88999998999999999998754332233344568999999999999899999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH----HHhcChh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS----EMLNHEF  237 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~----evl~hp~  237 (251)
                      +||||+||++|+|++|.+||.+.+.......+....   ...+..+++.+.+++.+||+.||.+|+++.    ++++|+|
T Consensus       177 ~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~i~~~~~  253 (325)
T cd05602         177 VDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKP---LQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIF  253 (325)
T ss_pred             cccccccHHHHHHhcCCCCCCCCCHHHHHHHHHhCC---cCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHHHHhcCcc
Confidence            999999999999999999998766655444443322   223456799999999999999999999876    8999999


Q ss_pred             hhhccCC
Q psy3253         238 IQRHDTD  244 (251)
Q Consensus       238 ~~~~~~~  244 (251)
                      |...+|+
T Consensus       254 ~~~~~~~  260 (325)
T cd05602         254 FSPINWD  260 (325)
T ss_pred             cCCCCHH
Confidence            9887663

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=2e-40  Score=283.82  Aligned_cols=207  Identities=36%  Similarity=0.746  Sum_probs=168.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR-RKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~-~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++..++..++||||+++++|.+++. ....+++..+..++.|++.||.|||++ +++|||||    
T Consensus        57 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlk----  131 (331)
T cd06649          57 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-EAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVK----  131 (331)
T ss_pred             HHHCCCCCCCeEEEEEEECCEEEEEeecCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCC----
Confidence            467899999999999999999999999999999999997 456799999999999999999999986 69999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||++......  ......++..|+|||++.+..++
T Consensus       132 -----------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~  180 (331)
T cd06649         132 -----------------------------PSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPERLQGTHYS  180 (331)
T ss_pred             -----------------------------hhhEEEcCCCcEEEccCccccccccc--ccccCCCCcCcCCHhHhcCCCCC
Confidence                                         88888888999999999998755332  22334578899999999988899


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC--------------------------------------------
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT--------------------------------------------  195 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~--------------------------------------------  195 (251)
                      .++|+||+||++|++++|+.||...+.......+..                                            
T Consensus       181 ~~~DiwslG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (331)
T cd06649         181 VQSDIWSMGLSLVELAIGRYPIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYI  260 (331)
T ss_pred             chHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccccCCccccCcccccccccccccccccccchhHHHHHHHH
Confidence            999999999999999999999965433222111100                                            


Q ss_pred             -CCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         196 -KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       196 -~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                       ...........+++++.+||.+||++||++|||++|+++||||+....
T Consensus       261 ~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~~  309 (331)
T cd06649         261 VNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHTFIKRSEV  309 (331)
T ss_pred             HhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcChHHhhccc
Confidence             000000012246789999999999999999999999999999987544

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0663|consensus

Probab=100.00  E-value=3e-41  Score=274.76  Aligned_cols=208  Identities=27%  Similarity=0.478  Sum_probs=173.3

Q ss_pred             CCCCCCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |.+.+|||||.+.++...  -+.+|||||||+. +|..++..-.++|...+++.+..|++.|++|||...|+|||+|   
T Consensus       129 Ll~~~H~NIV~vkEVVvG~~~d~iy~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK---  204 (419)
T KOG0663|consen  129 LLKARHPNIVEVKEVVVGSNMDKIYIVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLK---  204 (419)
T ss_pred             HHhcCCCCeeeeEEEEeccccceeeeeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhceeEecccc---
Confidence            346789999999998874  4579999999987 9999998777899999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IG  157 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~  157 (251)
                                                    ++|++++..|.+||+|||+|+.++.+.......+-|.+|+|||.+.+ ..
T Consensus       205 ------------------------------~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~t  254 (419)
T KOG0663|consen  205 ------------------------------TSNLLLSHKGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKT  254 (419)
T ss_pred             ------------------------------hhheeeccCCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcc
Confidence                                          88999999999999999999999887666666677899999999976 55


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchh---hhhcCCCCCCC----CCC---------------------C-CCCC
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRA---IFMIPTKPPPS----FRE---------------------P-DVWT  208 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~---~~~~~~~~~~~----~~~---------------------~-~~~~  208 (251)
                      |+.+.||||+||++.+++++++.|.+......   +..+...+...    +..                     . ..++
T Consensus       255 yst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~ls  334 (419)
T KOG0663|consen  255 YSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLS  334 (419)
T ss_pred             cCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhhhhccccccc
Confidence            89999999999999999999999976544333   33332221110    000                     0 1135


Q ss_pred             HHHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         209 PEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       209 ~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                      ..-++|+..+|.+||.+|.|++|.|.|+||++..
T Consensus       335 e~g~~Lln~llt~dP~kR~tA~~~L~h~~F~e~P  368 (419)
T KOG0663|consen  335 EQGFDLLNKLLTYDPGKRITAEDGLKHEYFRETP  368 (419)
T ss_pred             hhHHHHHHHHhccCccccccHHHhhcccccccCC
Confidence            7789999999999999999999999999999843

>KOG0660|consensus

Probab=100.00  E-value=1.8e-41  Score=278.78  Aligned_cols=211  Identities=26%  Similarity=0.449  Sum_probs=170.2

Q ss_pred             CCCCCCCccceeeeeEee-----CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK-----NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~-----~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      |+.++|+||+.+++++.-     -..+|+|+|+|+ .+|.+.++ .+..+++.-++.+++||+.||+|+|+.|++|||+|
T Consensus        75 Lr~~~HeNIi~l~di~~p~~~~~f~DvYiV~elMe-tDL~~iik-~~~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLK  152 (359)
T KOG0660|consen   75 LRHLRHENIIGLLDIFRPPSRDKFNDVYLVFELME-TDLHQIIK-SQQDLTDDHAQYFLYQILRGLKYIHSANVIHRDLK  152 (359)
T ss_pred             HHHhcCCCcceEEeecccccccccceeEEehhHHh-hHHHHHHH-cCccccHHHHHHHHHHHHHhcchhhcccccccccc
Confidence            356789999999999964     357999999995 59999987 45669999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc--ccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT--MAKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~~y~aPE~~  153 (251)
                                                       |.|++++.+..+||+|||+|+.....  .......+-|.+|+|||++
T Consensus       153 ---------------------------------PsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPEll  199 (359)
T KOG0660|consen  153 ---------------------------------PSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELL  199 (359)
T ss_pred             ---------------------------------hhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHH
Confidence                                             88999999999999999999877532  1222344578999999998


Q ss_pred             c-cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CCC------------------------CCC-CCCC
Q psy3253         154 Q-EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TKP------------------------PPS-FREP  204 (251)
Q Consensus       154 ~-~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~~------------------------~~~-~~~~  204 (251)
                      . ...|+.+.||||+||++.||++|++.|.+.+.......+.   ..+                        +.. ....
T Consensus       200 l~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~f  279 (359)
T KOG0660|consen  200 LNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIF  279 (359)
T ss_pred             hccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHc
Confidence            5 4779999999999999999999999997654443332221   110                        000 0113


Q ss_pred             CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCC
Q psy3253         205 DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPS  246 (251)
Q Consensus       205 ~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~  246 (251)
                      ...++...+|+++||..||.+|+|++|+|+|||+...-....
T Consensus       280 p~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp~d  321 (359)
T KOG0660|consen  280 PNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDPED  321 (359)
T ss_pred             CCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCCcc
Confidence            456899999999999999999999999999999987655443

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=2.4e-41  Score=288.76  Aligned_cols=205  Identities=27%  Similarity=0.414  Sum_probs=174.8

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||+++++++..++..|+||||+.+|+|..++. ....+++..+..++.||+.||.|||++|++|||||      
T Consensus        51 ~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlk------  123 (325)
T cd05604          51 KNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQ-RERSFPEPRARFYAAEIASALGYLHSINIVYRDLK------  123 (325)
T ss_pred             HhCCCCCCccEEEEEecCCEEEEEEcCCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC------
Confidence            46899999999999999999999999999999998886 55789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||++..............|++.|+|||.+.+..++.+
T Consensus       124 ---------------------------p~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  176 (325)
T cd05604         124 ---------------------------PENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDNT  176 (325)
T ss_pred             ---------------------------HHHeEECCCCCEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCCCCCCc
Confidence                                       88999999999999999998654322223344568899999999999889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH----HHHhcChh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA----SEMLNHEF  237 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~----~evl~hp~  237 (251)
                      +||||+||++|+|++|..||...+.......+....   ...+...+..+.+++.+||..+|++||++    +++++|||
T Consensus       177 ~DvwslG~il~el~~G~~pf~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~~i~~h~~  253 (325)
T cd05604         177 VDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILHKP---LVLRPGASLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPF  253 (325)
T ss_pred             CccccccceehhhhcCCCCCCCCCHHHHHHHHHcCC---ccCCCCCCHHHHHHHHHHhccCHHhcCCCCCCHHHHhcCCC
Confidence            999999999999999999998766555544443332   12234578999999999999999999976    59999999


Q ss_pred             hhhccC
Q psy3253         238 IQRHDT  243 (251)
Q Consensus       238 ~~~~~~  243 (251)
                      |+...|
T Consensus       254 f~~~~~  259 (325)
T cd05604         254 FESLSW  259 (325)
T ss_pred             cCCCCH
Confidence            987655

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=5.1e-41  Score=287.26  Aligned_cols=204  Identities=29%  Similarity=0.520  Sum_probs=170.2

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .+||||+++++++......|+||||+.+|+|..++. ....+++..++.++.|++.||.|||++|++|||||        
T Consensus        53 ~~hp~iv~~~~~~~~~~~~~lv~E~~~~~~L~~~~~-~~~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dik--------  123 (329)
T cd05618          53 SNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQ-RQRKLPEEHARFYSAEISLALNYLHERGIIYRDLK--------  123 (329)
T ss_pred             CCCCcCCceeeEEEeCCEEEEEEeCCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC--------
Confidence            489999999999999999999999999999998886 45689999999999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchh
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD  163 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  163 (251)
                                               |+||+++.++.++|+|||++..............|+..|+|||++.+..++.++|
T Consensus       124 -------------------------p~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  178 (329)
T cd05618         124 -------------------------LDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVD  178 (329)
T ss_pred             -------------------------HHHEEECCCCCEEEeeCCccccccCCCCccccccCCccccCHHHHcCCCCCCccc
Confidence                                     8899999999999999999865332222334456889999999999989999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcc--------h-hhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC------
Q psy3253         164 MWSLGITALEMAEGKPPYGDIHPM--------R-AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT------  228 (251)
Q Consensus       164 vwslG~~l~~l~~g~~p~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps------  228 (251)
                      +||+||++|+|++|..||......        . ....+...   ....+..++..+.++|.+||+.||++||+      
T Consensus       179 iwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~---~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~~~~~~  255 (329)
T cd05618         179 WWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEK---QIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTG  255 (329)
T ss_pred             eecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcC---CCCCCCCCCHHHHHHHHHHhcCCHHHcCCCCCCCC
Confidence            999999999999999999521111        1 11111111   22345678999999999999999999998      


Q ss_pred             HHHHhcChhhhhccCC
Q psy3253         229 ASEMLNHEFIQRHDTD  244 (251)
Q Consensus       229 ~~evl~hp~~~~~~~~  244 (251)
                      ++++++||||+..+|.
T Consensus       256 ~~~i~~hp~f~~~~~~  271 (329)
T cd05618         256 FADIQGHPFFRNVDWD  271 (329)
T ss_pred             HHHHhcCCCCCCCCHH
Confidence            5899999999988774

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=6.5e-41  Score=290.97  Aligned_cols=209  Identities=25%  Similarity=0.424  Sum_probs=174.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+.++||||+++++++.++...|+||||+.+|+|.+++.  +..+++..+..++.||+.||.|||++|++|||||     
T Consensus        97 l~~~~h~~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~--~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLk-----  169 (370)
T cd05596          97 MAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMS--NYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVK-----  169 (370)
T ss_pred             HHhCCCCCcceEEEEEecCCEEEEEEcCCCCCcHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----
Confidence            357899999999999999999999999999999999986  3468999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccC---
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEI---  156 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~---  156 (251)
                                                  |+||+++.++.++|+|||++........ ......||+.|+|||++.+.   
T Consensus       170 ----------------------------p~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  221 (370)
T cd05596         170 ----------------------------PDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGD  221 (370)
T ss_pred             ----------------------------HHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCC
Confidence                                        8899999999999999999976543211 22345689999999998653   


Q ss_pred             -CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCc--cCCHHHH
Q psy3253         157 -GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEE--RATASEM  232 (251)
Q Consensus       157 -~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~--Rps~~ev  232 (251)
                       .++.++|+||+||++|+|++|..||.+.+.......+... ....+.....++.++.++|.+||+.+|++  |+|++|+
T Consensus       222 ~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~el  301 (370)
T cd05596         222 GYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMDHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEI  301 (370)
T ss_pred             CCCCCceeeeehhHHHHHHHhCCCCcCCCCHHHHHHHHHcCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHH
Confidence             3788999999999999999999999876665544444332 22233333457999999999999999988  9999999


Q ss_pred             hcChhhhhccCC
Q psy3253         233 LNHEFIQRHDTD  244 (251)
Q Consensus       233 l~hp~~~~~~~~  244 (251)
                      ++||||+..+|.
T Consensus       302 l~h~~~~~~~~~  313 (370)
T cd05596         302 KSHPFFKNDQWT  313 (370)
T ss_pred             hcCcccCCCChh
Confidence            999999987765

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.3e-41  Score=291.34  Aligned_cols=210  Identities=32%  Similarity=0.565  Sum_probs=174.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||++++++|.++...|+||||+.+|+|.+++. ....+++..++.++.|++.||.|||++|++|||||     
T Consensus        55 l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~l~-~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlk-----  128 (364)
T cd05599          55 LAEADNPWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLM-KKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIK-----  128 (364)
T ss_pred             HHhCCCCCCcceEEEEEcCCeEEEEECCCCCcHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCC-----
Confidence            356899999999999999999999999999999999987 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc------------------------
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA------------------------  136 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~------------------------  136 (251)
                                                  |+||+++.++.++|+|||++........                        
T Consensus       129 ----------------------------p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (364)
T cd05599         129 ----------------------------PDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMS  180 (364)
T ss_pred             ----------------------------HHHeEECCCCCEEEeecccceecccccccccccccccccccccccccccccc
Confidence                                        8899999999999999999864321100                        


Q ss_pred             --------------cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCC
Q psy3253         137 --------------KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSF  201 (251)
Q Consensus       137 --------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~  201 (251)
                                    ......||+.|+|||++.+..++.++||||+||++|+|++|..||.+.+.......+... .....
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~~~~~~i~~~~~~~~~  260 (364)
T cd05599         181 SKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQETYRKIINWKETLQF  260 (364)
T ss_pred             ccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCCHHHHHHHHHcCCCccCC
Confidence                          001235889999999999889999999999999999999999999877665544333221 11222


Q ss_pred             CCCCCCCHHHHHHHHHhhhcCcCccCC---HHHHhcChhhhhccCCC
Q psy3253         202 REPDVWTPEFIDFVSRCLVKNPEERAT---ASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       202 ~~~~~~~~~~~~li~~~l~~~p~~Rps---~~evl~hp~~~~~~~~~  245 (251)
                      .....+++++.++|.+|+. +|.+|++   ++|+++||||+..+|+.
T Consensus       261 ~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h~~~~~~~~~~  306 (364)
T cd05599         261 PDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKSHPFFKGVDWEH  306 (364)
T ss_pred             CCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhcCCCcCCCCHHH
Confidence            2234578999999999997 9999997   99999999999887743

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=5.8e-41  Score=285.85  Aligned_cols=206  Identities=29%  Similarity=0.450  Sum_probs=174.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||+++++++.+....|+||||+++|+|...+. ....+++..+..++.||+.||.|||+.|++|||||      
T Consensus        51 ~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlk------  123 (321)
T cd05603          51 KNLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQ-RERCFLEPRARFYAAEVASAIGYLHSLNIIYRDLK------  123 (321)
T ss_pred             HhCCCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCC------
Confidence            56899999999999999999999999999999998886 45678999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.+||+|||++..............+++.|+|||.+.+..++.+
T Consensus       124 ---------------------------p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  176 (321)
T cd05603         124 ---------------------------PENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRT  176 (321)
T ss_pred             ---------------------------HHHeEECCCCCEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCCCCCCc
Confidence                                       88999999999999999998653322223334567899999999988889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH----HHHhcChh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA----SEMLNHEF  237 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~----~evl~hp~  237 (251)
                      +||||+||++|+|++|..||...+.......+....   ...+...+.++.+++.+||+.||++|+++    .|+++|+|
T Consensus       177 ~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~~~  253 (321)
T cd05603         177 VDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNILHKP---LQLPGGKTVAACDLLVGLLHKDQRRRLGAKADFLEIKNHVF  253 (321)
T ss_pred             CcccccchhhhhhhcCCCCCCCCCHHHHHHHHhcCC---CCCCCCCCHHHHHHHHHHccCCHhhcCCCCCCHHHHhCCCC
Confidence            999999999999999999998776555544444332   23355678999999999999999999865    59999999


Q ss_pred             hhhccCC
Q psy3253         238 IQRHDTD  244 (251)
Q Consensus       238 ~~~~~~~  244 (251)
                      |...+|.
T Consensus       254 ~~~~~~~  260 (321)
T cd05603         254 FSPINWD  260 (321)
T ss_pred             cCCCCHH
Confidence            9876653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=1.1e-40  Score=284.61  Aligned_cols=205  Identities=26%  Similarity=0.449  Sum_probs=173.3

Q ss_pred             CCCC-CccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           3 QCDS-PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         3 ~l~h-pniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      .++| ++|+++++++.+.+.+|+||||+++|+|.+++. ....+++..+..++.||+.||.|||++|++|||||      
T Consensus        56 ~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlk------  128 (324)
T cd05587          56 LPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQ-QVGKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLK------  128 (324)
T ss_pred             hcCCCCceeeeEEEEEcCCEEEEEEcCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC------
Confidence            4544 568899999999999999999999999999986 45679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||++..............|++.|+|||++.+..++.+
T Consensus       129 ---------------------------p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  181 (324)
T cd05587         129 ---------------------------LDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKS  181 (324)
T ss_pred             ---------------------------HHHeEEcCCCCEEEeecCcceecCCCCCceeeecCCccccChhhhcCCCCCcc
Confidence                                       88999999999999999998643222222334568899999999999889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH-----HHHhcCh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA-----SEMLNHE  236 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~-----~evl~hp  236 (251)
                      +|+||+||++|+|++|+.||.+.+.......+....   ...+..+++++.+++.+||..||++|++.     +++++||
T Consensus       182 ~DiwslGvil~elltG~~pf~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~hp  258 (324)
T cd05587         182 VDWWAFGVLLYEMLAGQPPFDGEDEDELFQSIMEHN---VSYPKSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIREHA  258 (324)
T ss_pred             cchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHcCC---CCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCC
Confidence            999999999999999999998776655555444332   22356689999999999999999999976     8999999


Q ss_pred             hhhhccCC
Q psy3253         237 FIQRHDTD  244 (251)
Q Consensus       237 ~~~~~~~~  244 (251)
                      ||+..+|.
T Consensus       259 ~~~~~~~~  266 (324)
T cd05587         259 FFRRIDWE  266 (324)
T ss_pred             CcCCCCHH
Confidence            99987764

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3e-41  Score=290.62  Aligned_cols=210  Identities=32%  Similarity=0.558  Sum_probs=176.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++.+.|+||||+.+++|.+++.. ...+++..++.++.||+.||.|||+.|++|||||     
T Consensus        55 l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlk-----  128 (350)
T cd05573          55 LADADSPWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIR-KDVFPEETARFYIAELVLALDSVHKLGFIHRDIK-----  128 (350)
T ss_pred             HHhcCCCCccchhhheecCCeEEEEEcCCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----
Confidence            3567899999999999999999999999999999999974 4789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-------------------------
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-------------------------  135 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-------------------------  135 (251)
                                                  |+||+++.++.++|+|||++.......                         
T Consensus       129 ----------------------------p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (350)
T cd05573         129 ----------------------------PDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDH  180 (350)
T ss_pred             ----------------------------HHHeEECCCCCEEeecCCCCccCcccCccccccccccccccccccccccccc
Confidence                                        889999999999999999997654332                         


Q ss_pred             ----ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHH
Q psy3253         136 ----AKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPE  210 (251)
Q Consensus       136 ----~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  210 (251)
                          .......||+.|+|||++.+..++.++|||||||++|+|++|..||...+.......+... ..........++++
T Consensus       181 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~  260 (350)
T cd05573         181 KQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQETYNKIINWKESLRFPPDPPVSPE  260 (350)
T ss_pred             ccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCCHHHHHHHHhccCCcccCCCCCCCCHH
Confidence                1223346889999999999989999999999999999999999999776655444333321 11122223347999


Q ss_pred             HHHHHHHhhhcCcCccCC-HHHHhcChhhhhccCCC
Q psy3253         211 FIDFVSRCLVKNPEERAT-ASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       211 ~~~li~~~l~~~p~~Rps-~~evl~hp~~~~~~~~~  245 (251)
                      +.++|.+||. ||++|++ ++|+++||||+..+|+.
T Consensus       261 ~~~li~~ll~-dp~~R~~s~~~ll~hp~~~~~~~~~  295 (350)
T cd05573         261 AIDLICRLLC-DPEDRLGSFEEIKSHPFFKGIDWEN  295 (350)
T ss_pred             HHHHHHHHcc-ChhhcCCCHHHHhcCCCcCCCCHHH
Confidence            9999999998 9999999 99999999999887753

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=9.9e-41  Score=279.67  Aligned_cols=204  Identities=22%  Similarity=0.434  Sum_probs=163.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...|+||||+.++++..+.. ....+++..++.++.|++.||.|||+.|++|||||     
T Consensus        54 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~-~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlk-----  127 (287)
T cd07848          54 LRTLKQENIVELKEAFRRRGKLYLVFEYVEKNMLELLEE-MPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIK-----  127 (287)
T ss_pred             HHhCCCccccchhhhEecCCEEEEEEecCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----
Confidence            357899999999999999999999999998877665543 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++|+|||++........ ......+++.|+|||++.+..++
T Consensus       128 ----------------------------p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  179 (287)
T cd07848         128 ----------------------------PENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYG  179 (287)
T ss_pred             ----------------------------HHHEEEcCCCcEEEeeccCcccccccccccccccccccccCCcHHHcCCCCC
Confidence                                        8888998899999999999976543211 12234578899999999888899


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CC------------------CCCCC--------CCCCCCCHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TK------------------PPPSF--------REPDVWTPE  210 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~------------------~~~~~--------~~~~~~~~~  210 (251)
                      .++|+||+||++|+|++|++||.+.+.......+.   ..                  ..+..        .....++++
T Consensus       180 ~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  259 (287)
T cd07848         180 KAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGV  259 (287)
T ss_pred             CchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHH
Confidence            99999999999999999999997654322211100   00                  00000        001236788


Q ss_pred             HHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         211 FIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       211 ~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +.+|+++||+.||++|||++|+++||||
T Consensus       260 ~~dll~~~L~~~P~~R~s~~~~l~hp~f  287 (287)
T cd07848         260 LLDLMKNLLKLNPTDRYLTEQCLNHPAF  287 (287)
T ss_pred             HHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence            9999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.8e-40  Score=275.98  Aligned_cols=209  Identities=44%  Similarity=0.894  Sum_probs=178.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...|+||||+++++|.+++......+++..++.++.|++.||.|||++|++|+|||     
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~-----  130 (280)
T cd06611          56 LSECKHPNIVGLYEAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLK-----  130 (280)
T ss_pred             HHhCCCCceeEEEEEEecCCeEEEEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----
Confidence            357899999999999999999999999999999999998666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc-----c
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----E  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~  155 (251)
                                                  |+||+++.++.++|+|||.+..............++..|+|||.+.     .
T Consensus       131 ----------------------------p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~  182 (280)
T cd06611         131 ----------------------------AGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKD  182 (280)
T ss_pred             ----------------------------hhhEEECCCCCEEEccCccchhhcccccccceeecchhhcCHHHHhhcccCC
Confidence                                        8888888889999999999865543333334456788899999874     3


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ..++.++|+||+|+++|++++|.+||...+.......+.....+....+..++.++.+++.+||+.+|++||+++++++|
T Consensus       183 ~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         183 NPYDYKADIWSLGITLIELAQMEPPHHELNPMRVLLKILKSEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             CCCCccccHHHHHHHHHHHHhCCCCcccCCHHHHHHHHhcCCCCCcCCcccCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence            45677899999999999999999999877665555445444444444566789999999999999999999999999999


Q ss_pred             hhhhhcc
Q psy3253         236 EFIQRHD  242 (251)
Q Consensus       236 p~~~~~~  242 (251)
                      |||....
T Consensus       263 ~~~~~~~  269 (280)
T cd06611         263 PFVSDQS  269 (280)
T ss_pred             hhhcccc
Confidence            9998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=7.4e-41  Score=291.74  Aligned_cols=210  Identities=30%  Similarity=0.544  Sum_probs=172.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||++++++|.++...|+||||+.+|+|.+++. +...+++..++.++.||+.||.|||++||+|||||     
T Consensus        55 l~~~~h~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~-~~~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlK-----  128 (382)
T cd05625          55 LAEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLI-RMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIK-----  128 (382)
T ss_pred             HHhCCCCcCCeEEEEEEeCCEEEEEEeCCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----
Confidence            357899999999999999999999999999999999986 44678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-------------------------
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-------------------------  135 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-------------------------  135 (251)
                                                  |+||+++.++.++|+|||++.......                         
T Consensus       129 ----------------------------p~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (382)
T cd05625         129 ----------------------------PDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDP  180 (382)
T ss_pred             ----------------------------HHHEEECCCCCEEEeECCCCcccccccccccccccccccccccccccccccc
Confidence                                        889999999999999999975321000                         


Q ss_pred             ----------------------ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc
Q psy3253         136 ----------------------AKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI  193 (251)
Q Consensus       136 ----------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~  193 (251)
                                            .......||+.|+|||++.+..++.++||||+||++|+|++|.+||...+.......+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i  260 (382)
T cd05625         181 ANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQTPLETQMKV  260 (382)
T ss_pred             ccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence                                  0011235788999999999889999999999999999999999999876654443333


Q ss_pred             CC-CCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC---HHHHhcChhhhhccCCC
Q psy3253         194 PT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT---ASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps---~~evl~hp~~~~~~~~~  245 (251)
                      .. ......+....+++++.++|.+|+ .+|++|++   ++|+++||||+..+|..
T Consensus       261 ~~~~~~~~~p~~~~~s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~~~~~  315 (382)
T cd05625         261 INWQTSLHIPPQAKLSPEASDLIIKLC-RGPEDRLGKNGADEIKAHPFFKTIDFSS  315 (382)
T ss_pred             HccCCCcCCCCcccCCHHHHHHHHHHc-cCHhHcCCCCCHHHHhcCCCcCCcChHH
Confidence            22 222233334567999999999987 49999987   99999999999877653

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=100.00  E-value=3.4e-40  Score=275.83  Aligned_cols=210  Identities=42%  Similarity=0.861  Sum_probs=175.8

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||+++++++..+...++|+||+.+++|..++......+++..+..++.|++.||.|||+.|++|||||      
T Consensus        57 ~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlk------  130 (282)
T cd06643          57 ASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLK------  130 (282)
T ss_pred             HHCCCCCeeeEEEEEeeCCEEEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC------
Confidence            46899999999999999999999999999999999887556789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc-----cC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----EI  156 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~  156 (251)
                                                 |+||+++.++.++++|||++..............++..|+|||.+.     +.
T Consensus       131 ---------------------------p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  183 (282)
T cd06643         131 ---------------------------AGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDR  183 (282)
T ss_pred             ---------------------------cccEEEccCCCEEEccccccccccccccccccccccccccCHhhccccCCCCC
Confidence                                       8888888889999999999876543333334456788999999983     34


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         157 GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       157 ~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      .++.++|+||+||++|++++|.+||...+.......+..........+..++.++.++|.+||+.||++||+++++++||
T Consensus       184 ~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~  263 (282)
T cd06643         184 PYDYKADVWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQHP  263 (282)
T ss_pred             CCCccchhhhHHHHHHHHccCCCCccccCHHHHHHHHhhcCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCC
Confidence            57789999999999999999999997766555444443333333334556789999999999999999999999999999


Q ss_pred             hhhhccCC
Q psy3253         237 FIQRHDTD  244 (251)
Q Consensus       237 ~~~~~~~~  244 (251)
                      ||+.....
T Consensus       264 ~~~~~~~~  271 (282)
T cd06643         264 FVTVNSNK  271 (282)
T ss_pred             CEeccCCC
Confidence            99875443

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=2.8e-40  Score=295.75  Aligned_cols=205  Identities=27%  Similarity=0.496  Sum_probs=174.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      |+.++||||++++++|..+++.|+||||+.+|+|.+++...   ...+++.++..++.|++.||.|||++||+|||||  
T Consensus       119 l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlk--  196 (478)
T PTZ00267        119 LAACDHFGIVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLK--  196 (478)
T ss_pred             HHhCCCCCEeEEEEEEEECCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcC--
Confidence            45789999999999999999999999999999999988532   4568999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~  155 (251)
                                                     |+||+++.++.+||+|||+++.......  ......||+.|+|||++.+
T Consensus       197 -------------------------------p~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  245 (478)
T PTZ00267        197 -------------------------------SANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWER  245 (478)
T ss_pred             -------------------------------HHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCC
Confidence                                           8889999899999999999976543211  1233458999999999998


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ..++.++||||+||++|+|++|..||.+.+.......+.......  .+..+++++.++|.+||..||++||++++++.|
T Consensus       246 ~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~~  323 (478)
T PTZ00267        246 KRYSKKADMWSLGVILYELLTLHRPFKGPSQREIMQQVLYGKYDP--FPCPVSSGMKALLDPLLSKNPALRPTTQQLLHT  323 (478)
T ss_pred             CCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCC--CCccCCHHHHHHHHHHhccChhhCcCHHHHHhC
Confidence            899999999999999999999999998776655554443332222  245678999999999999999999999999999


Q ss_pred             hhhhh
Q psy3253         236 EFIQR  240 (251)
Q Consensus       236 p~~~~  240 (251)
                      ||++.
T Consensus       324 ~~~~~  328 (478)
T PTZ00267        324 EFLKY  328 (478)
T ss_pred             HHHHH
Confidence            99874

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=100.00  E-value=5.5e-40  Score=276.04  Aligned_cols=212  Identities=42%  Similarity=0.861  Sum_probs=177.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +++++||||+++++++..+...|+||||+.+++|..++......+++..+..++.|++.||.|||+.|++|||||     
T Consensus        63 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlk-----  137 (292)
T cd06644          63 LATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLK-----  137 (292)
T ss_pred             HHhCCCCcEeeeEEEEEeCCeEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCC-----
Confidence            357899999999999999999999999999999998887666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc-----c
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----E  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~  155 (251)
                                                  |+||+++.++.++|+|||.+..............++..|+|||.+.     .
T Consensus       138 ----------------------------p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  189 (292)
T cd06644         138 ----------------------------AGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKD  189 (292)
T ss_pred             ----------------------------cceEEEcCCCCEEEccCccceeccccccccceecCCccccCceeeccccccC
Confidence                                        8888888889999999999865433323333445778899999984     3


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ..++.++|+||+||++|+|++|.+||...+.......+.....+....+..++.++.+++.+||+.+|++||+++|+++|
T Consensus       190 ~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  269 (292)
T cd06644         190 TPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSEPPTLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLEH  269 (292)
T ss_pred             CCCCchhhhHhHHHHHHHHhcCCCCCccccHHHHHHHHhcCCCccCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            45678899999999999999999999776554444444333333334456678999999999999999999999999999


Q ss_pred             hhhhhccCCC
Q psy3253         236 EFIQRHDTDP  245 (251)
Q Consensus       236 p~~~~~~~~~  245 (251)
                      |||+..+++.
T Consensus       270 ~~~~~~~~~~  279 (292)
T cd06644         270 PFVSSVTSNR  279 (292)
T ss_pred             ccccccccch
Confidence            9999877764

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=100.00  E-value=4.6e-40  Score=270.68  Aligned_cols=204  Identities=79%  Similarity=1.364  Sum_probs=176.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++.+.++...|+++||+.+++|.+++......+++..+..++.|++.||.|||+.|++||||+      
T Consensus        53 ~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~------  126 (256)
T cd06612          53 KQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIK------  126 (256)
T ss_pred             HhCCCCcEeeeeeeeecCCcEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC------
Confidence            56799999999999999999999999999999999997667789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||++..............++..|+|||.+.+..++.+
T Consensus       127 ---------------------------~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~  179 (256)
T cd06612         127 ---------------------------AGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNK  179 (256)
T ss_pred             ---------------------------cceEEECCCCcEEEcccccchhcccCccccccccCCccccCHHHHhcCCCCch
Confidence                                       88899988999999999999766544333334457788999999988889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +|+||+|+++|+|++|..||...........+..........+..++.++.+++.+||+.||++|||++|++.||||
T Consensus       180 ~Di~s~G~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~~~~~  256 (256)
T cd06612         180 ADIWSLGITAIEMAEGKPPYSDIHPMRAIFMIPNKPPPTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQHPFI  256 (256)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCcchhhhhhhhccCCCCCCCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhcCCCC
Confidence            99999999999999999999776655544444433333444455678899999999999999999999999999997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=2.4e-40  Score=283.43  Aligned_cols=212  Identities=23%  Similarity=0.401  Sum_probs=166.2

Q ss_pred             CCCCCCCccceeeeeEeeC-----CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN-----TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~-----~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      |++++||||+++++++...     ...|+||||+. ++|.+++. ....+++..+..++.||+.||.|||++|++|||||
T Consensus        53 l~~l~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk  130 (338)
T cd07859          53 LRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELME-SDLHQVIK-ANDDLTPEHHQFFLYQLLRALKYIHTANVFHRDLK  130 (338)
T ss_pred             HHhCCCCCEeeecceEeccCCCCCceEEEEEecCC-CCHHHHHH-hcccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC
Confidence            3578999999999988643     35899999995 69999886 45679999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---cccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEV  152 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~  152 (251)
                                                       |+||+++.++.+||+|||+++.......   ......+++.|+|||+
T Consensus       131 ---------------------------------p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~  177 (338)
T cd07859         131 ---------------------------------PKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPEL  177 (338)
T ss_pred             ---------------------------------HHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHHH
Confidence                                             8899999999999999999975432211   1223467889999999


Q ss_pred             ccc--CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhh---------------------------cCCCCCCC-CC
Q psy3253         153 IQE--IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM---------------------------IPTKPPPS-FR  202 (251)
Q Consensus       153 ~~~--~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~---------------------------~~~~~~~~-~~  202 (251)
                      +.+  ..++.++||||+||++|+|++|++||.+.+.......                           +....+.. ..
T Consensus       178 ~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  257 (338)
T cd07859         178 CGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQ  257 (338)
T ss_pred             HhccccccCchhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHH
Confidence            865  6788999999999999999999999966543221110                           00000000 01


Q ss_pred             CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCCC
Q psy3253         203 EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ  247 (251)
Q Consensus       203 ~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~~  247 (251)
                      .....++.+.+++.+||+.||++|||++|+++||||+.......+
T Consensus       258 ~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~hp~f~~~~~~~~~  302 (338)
T cd07859         258 KFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVERE  302 (338)
T ss_pred             hcCCCChHHHHHHHHHcCcCcccCCCHHHHhcCchhhhcCccccc
Confidence            123467889999999999999999999999999999887665543

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0604|consensus

Probab=100.00  E-value=4.8e-41  Score=270.19  Aligned_cols=212  Identities=27%  Similarity=0.374  Sum_probs=169.8

Q ss_pred             CCCccceeeeeEeeC----CeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           5 DSPYVVKYYGSYFKN----TDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         5 ~hpniv~l~~~~~~~----~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      .|||||.++++|.+.    .-+.+|||.++||.|++.++.++ ..|+|+++..+..||..|+.|||+.+|.||||||||+
T Consensus       113 ~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENL  192 (400)
T KOG0604|consen  113 GHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENL  192 (400)
T ss_pred             CCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhhe
Confidence            699999999999753    34789999999999999997544 5799999999999999999999999999999997776


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                      |...+.+                              +..+||+|||+|+..... ....+...|+.|.|||++...+|+
T Consensus       193 Lyt~t~~------------------------------na~lKLtDfGFAK~t~~~-~~L~TPc~TPyYvaPevlg~eKyd  241 (400)
T KOG0604|consen  193 LYTTTSP------------------------------NAPLKLTDFGFAKETQEP-GDLMTPCFTPYYVAPEVLGPEKYD  241 (400)
T ss_pred             eeecCCC------------------------------CcceEecccccccccCCC-ccccCCcccccccCHHHhCchhcC
Confidence            6664432                              335899999999876543 233345679999999999988999


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcch----hhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMR----AIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ..+|+||+|+++|-|++|.+||.......    ....+..+ ..-+.+.+..+|.+.+++|.++|..+|++|.|++|+++
T Consensus       242 kscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~  321 (400)
T KOG0604|consen  242 KSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMD  321 (400)
T ss_pred             CCCCccchhHHHHHhhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhc
Confidence            99999999999999999999995332211    11112222 22233346778999999999999999999999999999


Q ss_pred             ChhhhhccCCCCC
Q psy3253         235 HEFIQRHDTDPSQ  247 (251)
Q Consensus       235 hp~~~~~~~~~~~  247 (251)
                      |||+....--++.
T Consensus       322 hpwi~~~~~vp~t  334 (400)
T KOG0604|consen  322 HPWINQYEAVPQT  334 (400)
T ss_pred             CchhcccccCCCC
Confidence            9999887655543

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=1.8e-40  Score=283.16  Aligned_cols=204  Identities=25%  Similarity=0.433  Sum_probs=175.1

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||+|+++++++...+..|+||||+.+|+|.+++. ....+++.++..++.||+.||.|||++|++|||||         
T Consensus        59 ~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~~~-~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk---------  128 (323)
T cd05616          59 KPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQ-QVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLK---------  128 (323)
T ss_pred             CCCeEeeEEEEEecCCEEEEEEcCCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCC---------
Confidence            68999999999999999999999999999999886 45679999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhH
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM  164 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  164 (251)
                                              |+||+++.++.++|+|||+++.............|++.|+|||++.+..++.++|+
T Consensus       129 ------------------------p~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  184 (323)
T cd05616         129 ------------------------LDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDW  184 (323)
T ss_pred             ------------------------HHHeEECCCCcEEEccCCCceecCCCCCccccCCCChhhcCHHHhcCCCCCCccch
Confidence                                    88999999999999999998754322223334568899999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH-----HHHhcChhhh
Q psy3253         165 WSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA-----SEMLNHEFIQ  239 (251)
Q Consensus       165 wslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~-----~evl~hp~~~  239 (251)
                      ||+||++|+|++|..||.+.+.......+....   ...+..++.++.+++.+||+.||++|++.     +++++||||+
T Consensus       185 wSlGvil~elltg~~Pf~~~~~~~~~~~i~~~~---~~~p~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~  261 (323)
T cd05616         185 WAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHN---VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFR  261 (323)
T ss_pred             hchhHHHHHHHhCCCCCCCCCHHHHHHHHHhCC---CCCCCcCCHHHHHHHHHHcccCHHhcCCCCCCCHHHHhcCCCcC
Confidence            999999999999999998776665555444332   22355689999999999999999999974     8999999999


Q ss_pred             hccCCC
Q psy3253         240 RHDTDP  245 (251)
Q Consensus       240 ~~~~~~  245 (251)
                      ..+|..
T Consensus       262 ~~~~~~  267 (323)
T cd05616         262 YIDWEK  267 (323)
T ss_pred             CCCHHH
Confidence            877654

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=4.5e-41  Score=287.52  Aligned_cols=210  Identities=28%  Similarity=0.473  Sum_probs=175.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....|+||||+++|+|.++++.....+++..+..++.|++.||.|||+.|++|||||      
T Consensus        56 ~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlk------  129 (330)
T cd05601          56 SISNSPWIPQLQYAFQDKDNLYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIK------  129 (330)
T ss_pred             HhCCCCCCcceeeEEecCCeEEEEECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCc------
Confidence            46799999999999999999999999999999999998665789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-ccccccccccccccccc------
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAPEVIQ------  154 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~------  154 (251)
                                                 |+||+++.++.++|+|||++......... .....+++.|+|||++.      
T Consensus       130 ---------------------------p~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  182 (330)
T cd05601         130 ---------------------------PENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDG  182 (330)
T ss_pred             ---------------------------hHheEECCCCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccccc
Confidence                                       88999999999999999999765432221 22345788999999986      


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      ...++.++||||+||++|+|++|..||...........+... ....++....+++++.+++.+||. +|++|||+++++
T Consensus       183 ~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~  261 (330)
T cd05601         183 KGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQRFLKFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLC  261 (330)
T ss_pred             cCCCCCcceeecccceeeeeccCCCCCCCCCHHHHHHHHHcCCCccCCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHh
Confidence            455778999999999999999999999776655444433222 112233334578999999999998 999999999999


Q ss_pred             cChhhhhccCCC
Q psy3253         234 NHEFIQRHDTDP  245 (251)
Q Consensus       234 ~hp~~~~~~~~~  245 (251)
                      +||||+..+|+.
T Consensus       262 ~h~~~~~~~~~~  273 (330)
T cd05601         262 CHPFFSKIDWNN  273 (330)
T ss_pred             CCCCcCCCCHHH
Confidence            999999877654

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=1.8e-40  Score=289.21  Aligned_cols=211  Identities=28%  Similarity=0.506  Sum_probs=170.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+...+|+||||+.+|+|.+++. +...+++..++.++.||+.||.|||+.||+|||||     
T Consensus        55 l~~l~h~~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~-~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlK-----  128 (381)
T cd05626          55 LAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLI-RMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIK-----  128 (381)
T ss_pred             HHhcCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCc-----
Confidence            357899999999999999999999999999999999987 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-------------------------
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-------------------------  135 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-------------------------  135 (251)
                                                  |+||+++.+++++|+|||++.......                         
T Consensus       129 ----------------------------p~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (381)
T cd05626         129 ----------------------------PDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDV  180 (381)
T ss_pred             ----------------------------HHHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCcccccccc
Confidence                                        889999889999999999975321000                         


Q ss_pred             ----------------------ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc
Q psy3253         136 ----------------------AKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI  193 (251)
Q Consensus       136 ----------------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~  193 (251)
                                            .......||+.|+|||++.+..++.++||||+||++|+|++|..||...+.......+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~i  260 (381)
T cd05626         181 SNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTETQLKV  260 (381)
T ss_pred             cccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCCHHHHHHHH
Confidence                                  0001235889999999999888999999999999999999999999766554433332


Q ss_pred             CC-CCCCCCCCCCCCCHHHHHHHHHhh--hcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         194 PT-KPPPSFREPDVWTPEFIDFVSRCL--VKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~li~~~l--~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      .. ...........+++++.++|.+|+  ..+|..|++++|+++||||+..+|..
T Consensus       261 ~~~~~~~~~~~~~~~s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~~~~~~  315 (381)
T cd05626         261 INWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSEVDFSS  315 (381)
T ss_pred             HccccccCCCCCCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCcccCCCChhH
Confidence            22 122233334457999999999955  44555699999999999999877643

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG0032|consensus

Probab=100.00  E-value=4e-40  Score=283.84  Aligned_cols=213  Identities=27%  Similarity=0.447  Sum_probs=180.8

Q ss_pred             CCCCC-CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCD-SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~-hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |+++. |||||+++++|.+....++|||+|+||.|.+.+...  .+++..+..++.|++.|++|||+.|++|||+||||+
T Consensus        89 l~~l~~hpniv~l~~~~e~~~~~~lvmEL~~GGeLfd~i~~~--~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~  166 (382)
T KOG0032|consen   89 LQQLSGHPNIVQLKDAFEDPDSVYLVMELCEGGELFDRIVKK--HYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENL  166 (382)
T ss_pred             HHhccCCCCEEEEEEEEEcCCeEEEEEEecCCchHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHe
Confidence            45777 999999999999999999999999999999999754  499999999999999999999999999999996655


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                      |+....                             ..++.++++|||++..... ........||+.|+|||++...+++
T Consensus       167 L~~~~~-----------------------------~~~~~ik~~DFGla~~~~~-~~~~~~~~Gtp~y~APEvl~~~~y~  216 (382)
T KOG0032|consen  167 LLASKD-----------------------------EGSGRIKLIDFGLAKFIKP-GERLHTIVGTPEYVAPEVLGGRPYG  216 (382)
T ss_pred             eecccc-----------------------------CCCCcEEEeeCCCceEccC-CceEeeecCCccccCchhhcCCCCC
Confidence            555221                             0125799999999987765 3455667899999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      ..+||||+|+++|.|++|.+||.+.+.......+.... ......+..++..+.++|.+||..||.+|+|+.++|+|||+
T Consensus       217 ~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi  296 (382)
T KOG0032|consen  217 DEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILRGDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQHPWI  296 (382)
T ss_pred             cccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHcCCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhcCccc
Confidence            99999999999999999999998887666655554442 23334467789999999999999999999999999999999


Q ss_pred             hhccCCC
Q psy3253         239 QRHDTDP  245 (251)
Q Consensus       239 ~~~~~~~  245 (251)
                      +.....+
T Consensus       297 ~~~~~~~  303 (382)
T KOG0032|consen  297 KSIGEAT  303 (382)
T ss_pred             cCCcccc
Confidence            9865444

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.2e-40  Score=289.92  Aligned_cols=209  Identities=31%  Similarity=0.506  Sum_probs=170.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||++++++|.++...|+||||+.+|+|.+++. ....+++..++.++.|++.||+|||+.|++|||||     
T Consensus        55 l~~l~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~-~~~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlk-----  128 (377)
T cd05629          55 LAESDSPWVVSLYYSFQDAQYLYLIMEFLPGGDLMTMLI-KYDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIK-----  128 (377)
T ss_pred             HHhCCCCCcceEEEEEEcCCeeEEEEeCCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-----
Confidence            356899999999999999999999999999999999987 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc------------------------
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA------------------------  136 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~------------------------  136 (251)
                                                  |+||+++.++.++|+|||+++.......                        
T Consensus       129 ----------------------------p~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (377)
T cd05629         129 ----------------------------PDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVA  180 (377)
T ss_pred             ----------------------------HHHEEECCCCCEEEeecccccccccccccccccccccccccccccccccccc
Confidence                                        8889998899999999999853211000                        


Q ss_pred             -----------------------cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc
Q psy3253         137 -----------------------KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI  193 (251)
Q Consensus       137 -----------------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~  193 (251)
                                             ......||+.|+|||++.+..++.++|+||+||++|+|++|.+||.+.+.......+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i  260 (377)
T cd05629         181 VDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSENSHETYRKI  260 (377)
T ss_pred             cccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCCHHHHHHHH
Confidence                                   000135888999999999888999999999999999999999999776654443333


Q ss_pred             CC-CCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc---CCHHHHhcChhhhhccCC
Q psy3253         194 PT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEER---ATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R---ps~~evl~hp~~~~~~~~  244 (251)
                      .. .....++....++.++.++|.+||. +|.+|   +|++|+++||||+..+|+
T Consensus       261 ~~~~~~~~~p~~~~~s~~~~dli~~lL~-~~~~r~~r~~~~~~l~hp~~~~~~~~  314 (377)
T cd05629         261 INWRETLYFPDDIHLSVEAEDLIRRLIT-NAENRLGRGGAHEIKSHPFFRGVDWD  314 (377)
T ss_pred             HccCCccCCCCCCCCCHHHHHHHHHHhc-CHhhcCCCCCHHHHhcCCCcCCCCHH
Confidence            22 1112222233578999999999998 77775   599999999999977653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=3.7e-40  Score=276.59  Aligned_cols=202  Identities=27%  Similarity=0.443  Sum_probs=162.3

Q ss_pred             CCCCCCccceeeeeEe-----eCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           2 QQCDSPYVVKYYGSYF-----KNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~-----~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      +.++||||+++++++.     .....++||||+. ++|.+++... ...+++..++.++.|++.||.|||++|++|||||
T Consensus        59 ~~~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlk  137 (290)
T cd07862          59 ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLK  137 (290)
T ss_pred             cccCCCCcceEEEEEecccCCCCCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC
Confidence            3568999999999985     2456899999996 5999998643 3458999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.++|+|||++...... .......+++.|+|||.+.+
T Consensus       138 ---------------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~  183 (290)
T cd07862         138 ---------------------------------PQNILVTSSGQIKLADFGLARIYSFQ-MALTSVVVTLWYRAPEVLLQ  183 (290)
T ss_pred             ---------------------------------HHHEEEcCCCCEEEccccceEeccCC-cccccccccccccChHHHhC
Confidence                                             88999998999999999999755432 22334567889999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC----CCCC--------------------CCCCCCCHHH
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP----PPSF--------------------REPDVWTPEF  211 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~----~~~~--------------------~~~~~~~~~~  211 (251)
                      ..++.++||||+||++|+|++|.+||.+.........+....    +..+                    .....+++.+
T Consensus       184 ~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (290)
T cd07862         184 SSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELG  263 (290)
T ss_pred             CCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHH
Confidence            889999999999999999999999997655433322221100    0000                    0013467888


Q ss_pred             HHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         212 IDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       212 ~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .+++.+||+.||++|||+.|+++||||
T Consensus       264 ~~li~~~l~~~P~~R~s~~~~l~hp~f  290 (290)
T cd07862         264 KDLLLKCLTFNPAKRISAYSALSHPYF  290 (290)
T ss_pred             HHHHHHHhccCchhcCCHHHHhcCCCC
Confidence            999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=1.6e-40  Score=284.30  Aligned_cols=206  Identities=30%  Similarity=0.466  Sum_probs=169.0

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +++ +||||+++++++..+..+++||||+.+|+|.+++. .+..+++..++.++.||+.||.|||++|++|||||     
T Consensus        59 ~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlk-----  132 (332)
T cd05614          59 EHVRQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLY-QRDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIK-----  132 (332)
T ss_pred             HhccCCCCcccEEEEEecCCEEEEEEeCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCC-----
Confidence            345 59999999999999999999999999999999986 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-ccccccccccccccccccccC-CC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-AKRNTVIGTPFWMAPEVIQEI-GY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~-~~  158 (251)
                                                  |+||+++.++.++|+|||+++...... .......||+.|+|||++.+. .+
T Consensus       133 ----------------------------p~Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  184 (332)
T cd05614         133 ----------------------------LENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGH  184 (332)
T ss_pred             ----------------------------HHHeEECCCCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCCC
Confidence                                        888999889999999999987543221 122334689999999999764 47


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcc----hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CH
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPM----RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TA  229 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~  229 (251)
                      +.++|||||||++|+|++|..||......    .....+...   ....+..+++.+.+++.+||+.||++||     ++
T Consensus       185 ~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~  261 (332)
T cd05614         185 GKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKC---DPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGA  261 (332)
T ss_pred             CCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHhcC---CCCCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCH
Confidence            88999999999999999999999643221    111112221   1123456799999999999999999999     88


Q ss_pred             HHHhcChhhhhccCC
Q psy3253         230 SEMLNHEFIQRHDTD  244 (251)
Q Consensus       230 ~evl~hp~~~~~~~~  244 (251)
                      +++++||||+..+|.
T Consensus       262 ~~~l~h~~~~~~~~~  276 (332)
T cd05614         262 SEIKEHPFFKGLDWE  276 (332)
T ss_pred             HHHHcCCCcCCCCHH
Confidence            999999999987654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=3.5e-40  Score=281.85  Aligned_cols=205  Identities=28%  Similarity=0.514  Sum_probs=170.5

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||||+++++++.+...+|+||||+.+|+|..++. ....+++..++.++.||+.||.|||++|++|||||         
T Consensus        54 ~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlk---------  123 (327)
T cd05617          54 SNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQ-RQRKLPEEHARFYAAEICIALNFLHERGIIYRDLK---------  123 (327)
T ss_pred             CCCCEeeEEEEEEeCCEEEEEEeCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC---------
Confidence            69999999999999999999999999999998886 45679999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhH
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM  164 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  164 (251)
                                              |+||+++.++.++|+|||++..............|++.|+|||++.+..++.++|+
T Consensus       124 ------------------------p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  179 (327)
T cd05617         124 ------------------------LDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDW  179 (327)
T ss_pred             ------------------------HHHEEEeCCCCEEEeccccceeccCCCCceecccCCcccCCHHHHCCCCCCchhee
Confidence                                    88999999999999999998653322223344568999999999998899999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCc------chhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC------HHHH
Q psy3253         165 WSLGITALEMAEGKPPYGDIHP------MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT------ASEM  232 (251)
Q Consensus       165 wslG~~l~~l~~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps------~~ev  232 (251)
                      ||+||++|+|++|..||.....      ...........  ....+..++..+.+++.+||+.||++|++      ++++
T Consensus       180 wslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i  257 (327)
T cd05617         180 WALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEK--PIRIPRFLSVKASHVLKGFLNKDPKERLGCQPQTGFSDI  257 (327)
T ss_pred             ehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhC--CCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHH
Confidence            9999999999999999953211      11111111111  22345668999999999999999999997      5799


Q ss_pred             hcChhhhhccCCC
Q psy3253         233 LNHEFIQRHDTDP  245 (251)
Q Consensus       233 l~hp~~~~~~~~~  245 (251)
                      ++||||+..+|+.
T Consensus       258 ~~h~~f~~~~~~~  270 (327)
T cd05617         258 KSHTFFRSIDWDL  270 (327)
T ss_pred             HcCCCCCCCCHHH
Confidence            9999999887654

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=1.2e-40  Score=288.19  Aligned_cols=209  Identities=30%  Similarity=0.518  Sum_probs=172.8

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      .+++||||+++++.+.++...|+||||+.||+|.+++. +...+++..++.++.|++.||.|||++|++|||||      
T Consensus        56 ~~l~~~~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~-~~~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLk------  128 (360)
T cd05627          56 VEADGAWVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLM-KKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIK------  128 (360)
T ss_pred             HhCCCCCEeeEEEEEEcCCEEEEEEeCCCCccHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCC------
Confidence            46899999999999999999999999999999999987 45679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-------------------------
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-------------------------  136 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-------------------------  136 (251)
                                                 |+||+++.++.++|+|||++........                         
T Consensus       129 ---------------------------p~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (360)
T cd05627         129 ---------------------------PDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRK  181 (360)
T ss_pred             ---------------------------HHHEEECCCCCEEEeeccCCcccccccccccccccccCCcccccccccccccc
Confidence                                       8899999999999999999864321100                         


Q ss_pred             ----------cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCC
Q psy3253         137 ----------KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPD  205 (251)
Q Consensus       137 ----------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~  205 (251)
                                ......||+.|+|||++.+..++.++|+||+||++|+|++|.+||.+.+.......+... ....+....
T Consensus       182 ~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~  261 (360)
T cd05627         182 AETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYRKVMNWKETLVFPPEV  261 (360)
T ss_pred             cccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCCHHHHHHHHHcCCCceecCCCC
Confidence                      011235889999999999999999999999999999999999999877665554433321 112222233


Q ss_pred             CCCHHHHHHHHHhhhcCcCccC---CHHHHhcChhhhhccCCC
Q psy3253         206 VWTPEFIDFVSRCLVKNPEERA---TASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       206 ~~~~~~~~li~~~l~~~p~~Rp---s~~evl~hp~~~~~~~~~  245 (251)
                      .+++++.++|.+|+. ||++|+   +++|+++||||+..+|..
T Consensus       262 ~~s~~~~~li~~l~~-~p~~R~~~~~~~ei~~hp~f~~~~~~~  303 (360)
T cd05627         262 PISEKAKDLILRFCT-DSENRIGSNGVEEIKSHPFFEGVDWGH  303 (360)
T ss_pred             CCCHHHHHHHHHhcc-ChhhcCCCCCHHHHhcCCCCCCCCHHH
Confidence            478999999999875 999998   589999999999987754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=2.8e-40  Score=286.91  Aligned_cols=207  Identities=27%  Similarity=0.468  Sum_probs=170.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||+++++++.++...|+||||+.+|+|.+++.  ...+++..++.++.||+.||.|||++||+|||||      
T Consensus        98 ~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~l~--~~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLK------  169 (370)
T cd05621          98 AFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMS--NYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVK------  169 (370)
T ss_pred             HhCCCCCEeeEEEEEEcCCEEEEEEcCCCCCcHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC------
Confidence            46799999999999999999999999999999999986  3468999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCC---
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIG---  157 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~---  157 (251)
                                                 |+||+++.++.+||+|||++........ ......||+.|+|||++.+..   
T Consensus       170 ---------------------------p~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~  222 (370)
T cd05621         170 ---------------------------PDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDG  222 (370)
T ss_pred             ---------------------------HHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccCCCC
Confidence                                       8899999999999999999976543211 223456899999999996543   


Q ss_pred             -CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCc--cCCHHHHh
Q psy3253         158 -YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEE--RATASEML  233 (251)
Q Consensus       158 -~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~--Rps~~evl  233 (251)
                       ++.++|+||+||++|+|++|..||...+.......+... ....++....+++.+.+++.+||..++.+  |+|++|++
T Consensus       223 ~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l  302 (370)
T cd05621         223 YYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDHKNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIK  302 (370)
T ss_pred             CCCcccCEEeehHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHh
Confidence             778999999999999999999999776655444444332 22233333457899999999999865544  88999999


Q ss_pred             cChhhhhccC
Q psy3253         234 NHEFIQRHDT  243 (251)
Q Consensus       234 ~hp~~~~~~~  243 (251)
                      +||||+...|
T Consensus       303 ~hp~~~~~~~  312 (370)
T cd05621         303 QHPFFKNDQW  312 (370)
T ss_pred             cCcccCCCCc
Confidence            9999987654

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=7.1e-40  Score=286.16  Aligned_cols=209  Identities=25%  Similarity=0.362  Sum_probs=164.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||++++++|..+...+++||++. ++|..++. ....+++..++.++.||+.||.|||++||+|||||     
T Consensus       137 l~~l~HpnIv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~-~~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiK-----  209 (391)
T PHA03212        137 LRAINHPSIIQLKGTFTYNKFTCLILPRYK-TDLYCYLA-AKRNIAICDILAIERSVLRAIQYLHENRIIHRDIK-----  209 (391)
T ss_pred             HHhCCCCCCCCEeEEEEECCeeEEEEecCC-CCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----
Confidence            467899999999999999999999999995 68988886 45678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-ccccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-AKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++|+|||+++...... .......||+.|+|||++.+..++
T Consensus       210 ----------------------------P~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  261 (391)
T PHA03212        210 ----------------------------AENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARDPYG  261 (391)
T ss_pred             ----------------------------hHhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCChhhhcCCCCC
Confidence                                        888888888999999999986433211 122334689999999999988999


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcc-------hhhhhc---CCCCC-----------------------------CC
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPM-------RAIFMI---PTKPP-----------------------------PS  200 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~-------~~~~~~---~~~~~-----------------------------~~  200 (251)
                      .++||||+||++|+|++|..||...+..       .....+   ....+                             +.
T Consensus       262 ~~~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (391)
T PHA03212        262 PAVDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGSRPL  341 (391)
T ss_pred             cHHHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCCCCCCC
Confidence            9999999999999999999876432110       000000   00000                             00


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         201 FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       201 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      +......+.++.++|.+||++||++|||++|+|+||||+.....
T Consensus       342 ~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~hp~f~~~~~~  385 (391)
T PHA03212        342 WTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDFAAFQDIPDP  385 (391)
T ss_pred             HHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcChhhccCCCC
Confidence            00011346689999999999999999999999999999875433

>KOG0611|consensus

Probab=100.00  E-value=2e-40  Score=276.24  Aligned_cols=200  Identities=29%  Similarity=0.531  Sum_probs=179.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+.|+||||+++|++|++++.+++||||..+|.|++|+. ..+.+++++++.+++||+.|+.|+|+++++|||+|     
T Consensus       107 MSsLNHPhII~IyEVFENkdKIvivMEYaS~GeLYDYiS-er~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLK-----  180 (668)
T KOG0611|consen  107 MSSLNHPHIIQIYEVFENKDKIVIVMEYASGGELYDYIS-ERGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLK-----  180 (668)
T ss_pred             HhhcCCCceeehhhhhcCCceEEEEEEecCCccHHHHHH-HhccccHHHHHHHHHHHHHHHHHHhhccceecccc-----
Confidence            678999999999999999999999999999999999997 56889999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  .+||+++.++.+||+|||++-.+... ....++.|++-|.+||++.+.+|..
T Consensus       181 ----------------------------LENILLD~N~NiKIADFGLSNly~~~-kfLqTFCGSPLYASPEIvNG~PY~G  231 (668)
T KOG0611|consen  181 ----------------------------LENILLDQNNNIKIADFGLSNLYADK-KFLQTFCGSPLYASPEIVNGTPYKG  231 (668)
T ss_pred             ----------------------------hhheeecCCCCeeeeccchhhhhccc-cHHHHhcCCcccCCccccCCCCCCC
Confidence                                        88999999999999999999766544 3445678999999999999999865


Q ss_pred             -chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhh
Q psy3253         161 -VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ  239 (251)
Q Consensus       161 -~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~  239 (251)
                       .+|.||||+++|-|+.|..||.+.+....+..+..+.-   ..|. -+....-||.+||..||++|+|+++|-+|=|+.
T Consensus       232 PEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~GaY---rEP~-~PSdA~gLIRwmLmVNP~RRATieDiAsHWWvN  307 (668)
T KOG0611|consen  232 PEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISRGAY---REPE-TPSDASGLIRWMLMVNPERRATIEDIASHWWVN  307 (668)
T ss_pred             CccchhhHHHHHHHHhhcccccCCchHHHHHHHhhcccc---cCCC-CCchHHHHHHHHHhcCcccchhHHHHhhhheee
Confidence             69999999999999999999999999888888777633   2232 367889999999999999999999999998875

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=100.00  E-value=4.1e-40  Score=275.04  Aligned_cols=210  Identities=25%  Similarity=0.398  Sum_probs=170.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.++.+.|+||||+.|++|.+++... ...+++..+..++.|++.||.|||+.|++|||||    
T Consensus        47 l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dik----  122 (277)
T cd05607          47 LEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMK----  122 (277)
T ss_pred             HHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCC----
Confidence            35789999999999999999999999999999999888533 3468999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||++....... ......++..|+|||++.+..++
T Consensus       123 -----------------------------p~Nili~~~~~~~l~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~  172 (277)
T cd05607         123 -----------------------------PENVLLDDQGNCRLSDLGLAVELKDGK-TITQRAGTNGYMAPEILKEEPYS  172 (277)
T ss_pred             -----------------------------hHhEEEcCCCCEEEeeceeeeecCCCc-eeeccCCCCCccCHHHHccCCCC
Confidence                                         888888888999999999987654321 22234578899999999888899


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcc----hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH----HH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPM----RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA----SE  231 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~----~e  231 (251)
                      .++|+||+||++|++++|..||......    .......... ... ....+++++.+++.+||+.||++||++    ++
T Consensus       173 ~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~  250 (277)
T cd05607         173 YPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDE-VKF-EHQNFTEESKDICRLFLAKKPEDRLGSREKNDD  250 (277)
T ss_pred             CchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhccc-ccc-ccccCCHHHHHHHHHHhccCHhhCCCCccchhh
Confidence            9999999999999999999999654321    1111111111 111 124579999999999999999999999    67


Q ss_pred             HhcChhhhhccCCCC
Q psy3253         232 MLNHEFIQRHDTDPS  246 (251)
Q Consensus       232 vl~hp~~~~~~~~~~  246 (251)
                      ++.||||+..+|+.-
T Consensus       251 ~~~h~~f~~~~~~~~  265 (277)
T cd05607         251 PRKHEFFKTINFPRL  265 (277)
T ss_pred             hhcChhhcCCCHHHH
Confidence            889999998877543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>KOG0580|consensus

Probab=100.00  E-value=2.7e-40  Score=258.19  Aligned_cols=202  Identities=31%  Similarity=0.548  Sum_probs=180.2

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +.|+||||+++|++|.+....||++||...|+|...++.. ...+++..+..++.|++.||.|+|.+++||||||     
T Consensus        77 s~L~hpnilrlY~~fhd~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiK-----  151 (281)
T KOG0580|consen   77 SHLRHPNILRLYGYFHDSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIK-----  151 (281)
T ss_pred             cccCCccHHhhhhheeccceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCC-----
Confidence            3689999999999999999999999999999999888633 4569999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+|++++..+.+|++|||.+....  ..+..+..||.-|.|||...+...+.
T Consensus       152 ----------------------------penlLlg~~~~lkiAdfGwsV~~p--~~kR~tlcgt~dyl~pEmv~~~~hd~  201 (281)
T KOG0580|consen  152 ----------------------------PENLLLGSAGELKIADFGWSVHAP--SNKRKTLCGTLDYLPPEMVEGRGHDK  201 (281)
T ss_pred             ----------------------------HHHhccCCCCCeeccCCCceeecC--CCCceeeecccccCCHhhcCCCCccc
Confidence                                        888888899999999999996544  34666778999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      .+|+|++|++.|+++.|.+||......+.+..+...   ....|..++.++.|+|.+|+..+|.+|.+..|++.|||+..
T Consensus       202 ~Vd~w~lgvl~yeflvg~ppFes~~~~etYkrI~k~---~~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~hpwI~a  278 (281)
T KOG0580|consen  202 FVDLWSLGVLCYEFLVGLPPFESQSHSETYKRIRKV---DLKFPSTISGGAADLISRLLVKNPIERLALTEVMDHPWIVA  278 (281)
T ss_pred             hhhHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHc---cccCCcccChhHHHHHHHHhccCccccccHHHHhhhHHHHh
Confidence            999999999999999999999877766666655544   34457889999999999999999999999999999999975


Q ss_pred             c
Q psy3253         241 H  241 (251)
Q Consensus       241 ~  241 (251)
                      .
T Consensus       279 ~  279 (281)
T KOG0580|consen  279 N  279 (281)
T ss_pred             c
Confidence            4

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=2.1e-40  Score=288.33  Aligned_cols=209  Identities=30%  Similarity=0.498  Sum_probs=171.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++.|.+++.+|+||||+++|+|.+++. ..+.+++..++.++.||+.||.|||++||+|||||     
T Consensus        55 l~~l~h~~iv~~~~~~~~~~~~~lv~E~~~~g~L~~~i~-~~~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlk-----  128 (376)
T cd05598          55 LAEADNEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLI-RLGIFEEDLARFYIAELTCAIESVHKMGFIHRDIK-----  128 (376)
T ss_pred             HHhCCCCCcceEEEEEEcCCEEEEEEeCCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCC-----
Confidence            357899999999999999999999999999999999997 45678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc--------------------------
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT--------------------------  134 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~--------------------------  134 (251)
                                                  |+||+++.++.++|+|||++......                          
T Consensus       129 ----------------------------p~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (376)
T cd05598         129 ----------------------------PDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEI  180 (376)
T ss_pred             ----------------------------HHHEEECCCCCEEEEeCCCCcccccccccccccccccccccccccccccccc
Confidence                                        88899998999999999997422100                          


Q ss_pred             -----------------cccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-
Q psy3253         135 -----------------MAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-  196 (251)
Q Consensus       135 -----------------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-  196 (251)
                                       ........||+.|+|||++.+..++.++||||+||++|+|++|..||.+.+.......+... 
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~  260 (376)
T cd05598         181 DRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADTPAETQLKVINWE  260 (376)
T ss_pred             ccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCCHHHHHHHHhccC
Confidence                             00001235889999999999989999999999999999999999999876655443332221 


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHhhhcCcCccC---CHHHHhcChhhhhccCC
Q psy3253         197 PPPSFREPDVWTPEFIDFVSRCLVKNPEERA---TASEMLNHEFIQRHDTD  244 (251)
Q Consensus       197 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp---s~~evl~hp~~~~~~~~  244 (251)
                      ..........+++++.++|.+|+ .+|++|+   |++|+++||||+..++.
T Consensus       261 ~~~~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~~ell~h~~~~~~~~~  310 (376)
T cd05598         261 TTLHIPSQAKLSREASDLILRLC-CGAEDRLGKNGADEIKAHPFFKGIDFA  310 (376)
T ss_pred             ccccCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCHHHHhCCCCcCCCCHH
Confidence            12222234467899999999977 5999999   99999999999876543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0594|consensus

Probab=100.00  E-value=6.1e-40  Score=269.96  Aligned_cols=213  Identities=26%  Similarity=0.467  Sum_probs=174.5

Q ss_pred             CCCCCCCc-cceeeeeEeeCC------eEEEEEEccCCCCHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHhCCcc
Q psy3253           1 MQQCDSPY-VVKYYGSYFKNT------DLWIVMEYCGAGSVSDIMRLRK---KTLSEDEIATILCDTLKGLEYLHLRRKI   70 (251)
Q Consensus         1 l~~l~hpn-iv~l~~~~~~~~------~~~lv~e~~~~gsL~~~~~~~~---~~l~~~~~~~~~~~i~~~l~~LH~~~ii   70 (251)
                      |+.++|+| ||++++++.+.+      .++|||||++. +|..++....   ..++...++.+..||+.||.|||++||+
T Consensus        64 lk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~Il  142 (323)
T KOG0594|consen   64 LKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGIL  142 (323)
T ss_pred             HHHhCCCcceEEEEeeeeecccccccceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCee
Confidence            46789999 999999998877      79999999965 9999998555   4688899999999999999999999999


Q ss_pred             ccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccc
Q psy3253          71 HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAP  150 (251)
Q Consensus        71 H~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  150 (251)
                      |||||                                 |+|++++++|.+||+|||+|+..+-+.........|.+|+||
T Consensus       143 HRDLK---------------------------------PQNlLi~~~G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaP  189 (323)
T KOG0594|consen  143 HRDLK---------------------------------PQNLLISSSGVLKLADFGLARAFSIPMRTYTPEVVTLWYRAP  189 (323)
T ss_pred             cccCC---------------------------------cceEEECCCCcEeeeccchHHHhcCCcccccccEEEeeccCH
Confidence            99988                                 999999999999999999998776554555666789999999


Q ss_pred             cccccC-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhh---hhcCCCCCCC--------------CCC---C-----
Q psy3253         151 EVIQEI-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAI---FMIPTKPPPS--------------FRE---P-----  204 (251)
Q Consensus       151 E~~~~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~---~~~~~~~~~~--------------~~~---~-----  204 (251)
                      |++.+. .|+...||||+||+++||+++++.|.+.......   ..+...+...              +..   +     
T Consensus       190 EvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~  269 (323)
T KOG0594|consen  190 EVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSS  269 (323)
T ss_pred             HHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHH
Confidence            999775 6899999999999999999999999765443332   2222221100              000   1     


Q ss_pred             --CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCCC
Q psy3253         205 --DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ  247 (251)
Q Consensus       205 --~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~~  247 (251)
                        ....++..+++.+||+++|.+|.|++.+|.||||+.......+
T Consensus       270 ~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~~~~~~  314 (323)
T KOG0594|consen  270 ILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSELPEKSSQ  314 (323)
T ss_pred             hccccCccHHHHHHHHhccCcccCcCHHHHhcChhhcccccchhh
Confidence              1123578999999999999999999999999999988665544

>KOG4721|consensus

Probab=100.00  E-value=1.4e-40  Score=286.82  Aligned_cols=199  Identities=27%  Similarity=0.553  Sum_probs=178.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++|+||||+.+.|+|....=+|+|||||..|.|.+.++ .+..+.......|..+|+.|+.|||.+.|||||||     
T Consensus       166 LRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~~VLk-a~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLK-----  239 (904)
T KOG4721|consen  166 LRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLYEVLK-AGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLK-----  239 (904)
T ss_pred             HHhccCcceeeEeeeecCCceeEEeeeccccccHHHHHh-ccCccCHHHHHHHHHHhhhhhHHHHHhhHhhhccC-----
Confidence            568999999999999988888999999999999999997 66788999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  .-||+++.+..+||+|||-++......+ .-.+.||..|||||++.+.+++.
T Consensus       240 ----------------------------SPNiLIs~~d~VKIsDFGTS~e~~~~ST-kMSFaGTVaWMAPEvIrnePcsE  290 (904)
T KOG4721|consen  240 ----------------------------SPNILISYDDVVKISDFGTSKELSDKST-KMSFAGTVAWMAPEVIRNEPCSE  290 (904)
T ss_pred             ----------------------------CCceEeeccceEEeccccchHhhhhhhh-hhhhhhhHhhhCHHHhhcCCccc
Confidence                                        7788888889999999999876554422 23456899999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      |+||||||++||||+||..||.+.+...+++.+-. ....+..|..+|+.|.=||+.||+-.|.+||++.+++.|
T Consensus       291 KVDIwSfGVVLWEmLT~EiPYkdVdssAIIwGVGs-NsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrqil~H  364 (904)
T KOG4721|consen  291 KVDIWSFGVVLWEMLTGEIPYKDVDSSAIIWGVGS-NSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQILLH  364 (904)
T ss_pred             ccceehhHHHHHHHHhcCCCccccchheeEEeccC-CcccccCcccCchHHHHHHHHHHhcCCCCCccHHHHHHH
Confidence            99999999999999999999999888887765544 345667789999999999999999999999999999999

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=100.00  E-value=2e-39  Score=273.51  Aligned_cols=207  Identities=41%  Similarity=0.829  Sum_probs=176.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +++++||||+++++++..+...|+|+||+.+++|..++.  ...+++.++..++.|++.||.|||+.|++|||||     
T Consensus        70 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~-----  142 (296)
T cd06655          70 MKELKNPNIVNFLDSFLVGDELFVVMEYLAGGSLTDVVT--ETCMDEAQIAAVCRECLQALEFLHANQVIHRDIK-----  142 (296)
T ss_pred             HHhcCCCceeeeeeeEecCceEEEEEEecCCCcHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----
Confidence            357899999999999999999999999999999999886  3468999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++..............++..|+|||.+.+..++.
T Consensus       143 ----------------------------p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  194 (296)
T cd06655         143 ----------------------------SDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGP  194 (296)
T ss_pred             ----------------------------HHHEEECCCCCEEEccCccchhcccccccCCCcCCCccccCcchhcCCCCCc
Confidence                                        8899998899999999999876544322233345778899999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++|+|||||++|++++|..||...+.......+.....+....+..+++.+.++|.+||..||++|||+++++.||||+.
T Consensus       195 ~~Dv~slGvil~~lltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~~~~~~~  274 (296)
T cd06655         195 KVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLKL  274 (296)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCcccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHhhChHhhh
Confidence            99999999999999999999977666544443333333344456678999999999999999999999999999999987


Q ss_pred             cc
Q psy3253         241 HD  242 (251)
Q Consensus       241 ~~  242 (251)
                      ..
T Consensus       275 ~~  276 (296)
T cd06655         275 AK  276 (296)
T ss_pred             cc
Confidence            55

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=1.1e-39  Score=276.41  Aligned_cols=208  Identities=25%  Similarity=0.439  Sum_probs=167.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..++..++||||+.+ +|.+++...+..+++..++.++.|++.||.|||++|++|||||     
T Consensus        58 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlk-----  131 (309)
T cd07872          58 LKDLKHANIVTLHDIVHTDKSLTLVFEYLDK-DLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLK-----  131 (309)
T ss_pred             HHhCCCCCcceEEEEEeeCCeEEEEEeCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----
Confidence            3578999999999999999999999999965 8988887566678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.++|+|||.+..............++..|+|||.+.+ ..++
T Consensus       132 ----------------------------p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  183 (309)
T cd07872         132 ----------------------------PQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYS  183 (309)
T ss_pred             ----------------------------HHHEEECCCCCEEECccccceecCCCccccccccccccccCCHHHhCCCCCC
Confidence                                        88999998999999999998754433222333456888999998854 5678


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CCC------------------CCC------CCCCCCCCHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TKP------------------PPS------FREPDVWTPEFI  212 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~~------------------~~~------~~~~~~~~~~~~  212 (251)
                      .++||||+||++|+|++|++||.+.+.......+.   ...                  .+.      ......+++++.
T Consensus       184 ~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (309)
T cd07872         184 TQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDTEGI  263 (309)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCCCHHHH
Confidence            89999999999999999999997654432221110   000                  000      011234688999


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                      ++|.+||+.||++|||++|+++||||+...
T Consensus       264 ~li~~~L~~dp~~R~t~~e~l~h~~~~~~~  293 (309)
T cd07872         264 ELLTKFLQYESKKRISAEEAMKHAYFRSLG  293 (309)
T ss_pred             HHHHHhccCChhhCCCHHHHhcChhhhhcc
Confidence            999999999999999999999999999754

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=100.00  E-value=1.9e-39  Score=273.51  Aligned_cols=207  Identities=43%  Similarity=0.844  Sum_probs=172.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++.+..+.+.|+||||+.+++|.+++.  ...+++.++..++.|++.||.|||+.|++|||||     
T Consensus        71 l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLk-----  143 (296)
T cd06654          71 MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIK-----  143 (296)
T ss_pred             HHhCCCCCEeeEEEEEEeCCEEEEeecccCCCCHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----
Confidence            356799999999999999999999999999999999986  3468999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||.+..............+++.|+|||.+.+..++.
T Consensus       144 ----------------------------p~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  195 (296)
T cd06654         144 ----------------------------SDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGP  195 (296)
T ss_pred             ----------------------------HHHEEEcCCCCEEECccccchhccccccccCcccCCccccCHHHHcCCCCCc
Confidence                                        8888888889999999999875443322233346788899999998888899


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++|+|||||++|++++|..||...+.............+....+..++..+.+++.+||..+|++|||++|+++||||..
T Consensus       196 ~~Dv~s~Gvil~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~~~~~~  275 (296)
T cd06654         196 KVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKI  275 (296)
T ss_pred             cchHHHHHHHHHHHHhCCCCCCCCCHHHhHHHHhcCCCCCCCCccccCHHHHHHHHHHCcCCcccCcCHHHHhhChhhhc
Confidence            99999999999999999999976655433322222222233335567889999999999999999999999999999986


Q ss_pred             cc
Q psy3253         241 HD  242 (251)
Q Consensus       241 ~~  242 (251)
                      ..
T Consensus       276 ~~  277 (296)
T cd06654         276 AK  277 (296)
T ss_pred             cC
Confidence            54

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-40  Score=283.75  Aligned_cols=204  Identities=31%  Similarity=0.484  Sum_probs=170.8

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||||+++++++.+....|+||||+.+|+|.+++. ....+++..++.++.||+.||.|||++|++|||||         
T Consensus        54 ~~p~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~-~~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlk---------  123 (330)
T cd05586          54 ESPFIVGLKFSFQTDSDLYLVTDYMSGGELFWHLQ-KEGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLK---------  123 (330)
T ss_pred             CCCcCcceEEEEecCCeEEEEEcCCCCChHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCC---------
Confidence            79999999999999999999999999999999886 46789999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccC-CCCcchh
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVAD  163 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~D  163 (251)
                                              |+||+++.++.++|+|||++..............||..|+|||++.+. .++.++|
T Consensus       124 ------------------------p~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~D  179 (330)
T cd05586         124 ------------------------PENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVD  179 (330)
T ss_pred             ------------------------HHHeEECCCCCEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCCCCCCccc
Confidence                                    889999989999999999986543322233345688999999998654 4789999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC----CHHHHhcChhhh
Q psy3253         164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA----TASEMLNHEFIQ  239 (251)
Q Consensus       164 vwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp----s~~evl~hp~~~  239 (251)
                      |||+||++|+|++|..||...+.......+..... .+ ....+++++.+++.+||..||++||    +++|+++||||.
T Consensus       180 vwslGvil~elltG~~Pf~~~~~~~~~~~i~~~~~-~~-~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~h~~~~  257 (330)
T cd05586         180 FWSLGVLVFEMCCGWSPFYAEDTQQMYRNIAFGKV-RF-PKNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFA  257 (330)
T ss_pred             eeccccEEEEeccCCCCCCCCCHHHHHHHHHcCCC-CC-CCccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhcCcccc
Confidence            99999999999999999977665554444333221 11 1234789999999999999999998    799999999998


Q ss_pred             hccCC
Q psy3253         240 RHDTD  244 (251)
Q Consensus       240 ~~~~~  244 (251)
                      ..+|.
T Consensus       258 ~~~~~  262 (330)
T cd05586         258 DIDWD  262 (330)
T ss_pred             CCCHH
Confidence            76644

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=1.2e-39  Score=278.04  Aligned_cols=204  Identities=27%  Similarity=0.470  Sum_probs=173.5

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||+|+++++++.+.+..|+||||+.+|+|.+++. ....+++.+++.++.|++.||.|||++|++|||||         
T Consensus        59 ~~~~i~~~~~~~~~~~~~~lv~Ey~~~g~L~~~i~-~~~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDik---------  128 (323)
T cd05615          59 KPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQ-QVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLK---------  128 (323)
T ss_pred             CCCchhheeeEEecCCEEEEEEcCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC---------
Confidence            56888999999999999999999999999999986 45679999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhH
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM  164 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  164 (251)
                                              |+||+++.++.++|+|||++..............|++.|+|||++.+..++.++|+
T Consensus       129 ------------------------p~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  184 (323)
T cd05615         129 ------------------------LDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDW  184 (323)
T ss_pred             ------------------------HHHeEECCCCCEEEeccccccccCCCCccccCccCCccccCHHHHcCCCCCCccch
Confidence                                    88999999999999999998754332222334458899999999998889999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHhcChhhh
Q psy3253         165 WSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEMLNHEFIQ  239 (251)
Q Consensus       165 wslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl~hp~~~  239 (251)
                      ||+||++|+|++|..||.+.+.......+....   ...+..++.++.+++.+||+.+|++|++     .+++++||||+
T Consensus       185 wslGvil~elltG~~pf~~~~~~~~~~~i~~~~---~~~p~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~f~  261 (323)
T cd05615         185 WAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHN---VSYPKSLSKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFR  261 (323)
T ss_pred             hhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC---CCCCccCCHHHHHHHHHHcccCHhhCCCCCCCCHHHHhcCcccC
Confidence            999999999999999998776655554443332   2235567899999999999999999997     57999999999


Q ss_pred             hccCCC
Q psy3253         240 RHDTDP  245 (251)
Q Consensus       240 ~~~~~~  245 (251)
                      ..+|..
T Consensus       262 ~~~~~~  267 (323)
T cd05615         262 RIDWDK  267 (323)
T ss_pred             CCCHHH
Confidence            887743

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG0585|consensus

Probab=100.00  E-value=2.2e-40  Score=280.24  Aligned_cols=208  Identities=32%  Similarity=0.541  Sum_probs=172.4

Q ss_pred             CCCCCCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~~~~-l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      |+++.|||||+|+++..+  .+.+|||+|||..|.+...-  .... +++.+++.++..++.||.|||.+||||||||  
T Consensus       162 lKkl~H~nVV~LiEvLDDP~s~~~YlVley~s~G~v~w~p--~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIK--  237 (576)
T KOG0585|consen  162 LKKLHHPNVVKLIEVLDDPESDKLYLVLEYCSKGEVKWCP--PDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIK--  237 (576)
T ss_pred             HHhcCCcCeeEEEEeecCcccCceEEEEEeccCCccccCC--CCcccccHHHHHHHHHHHHHHHHHHHhcCeeccccc--
Confidence            689999999999999975  46799999999988874432  2334 9999999999999999999999999999999  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccC-----cccccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT-----DTMAKRNTVIGTPFWMAPEV  152 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~-----~~~~~~~~~~~~~~y~aPE~  152 (251)
                                                     |+|++++.+|++||+|||.+....     .....-....|||.|+|||.
T Consensus       238 -------------------------------PsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~  286 (576)
T KOG0585|consen  238 -------------------------------PSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPEL  286 (576)
T ss_pred             -------------------------------hhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHh
Confidence                                           889999999999999999997552     11122233679999999999


Q ss_pred             cccCC----CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC
Q psy3253         153 IQEIG----YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT  228 (251)
Q Consensus       153 ~~~~~----~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  228 (251)
                      ..+..    .+.+.||||+|++||-++.|+.||.+....+....+.... ..++........+++||.+||.+||++|++
T Consensus       287 c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l~~KIvn~p-L~fP~~pe~~e~~kDli~~lL~KdP~~Ri~  365 (576)
T KOG0585|consen  287 CSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELELFDKIVNDP-LEFPENPEINEDLKDLIKRLLEKDPEQRIT  365 (576)
T ss_pred             hcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHHHHHHHHhcCc-ccCCCcccccHHHHHHHHHHhhcChhheee
Confidence            97632    3457899999999999999999998887777776665543 344444457899999999999999999999


Q ss_pred             HHHHhcChhhhhccCC
Q psy3253         229 ASEMLNHEFIQRHDTD  244 (251)
Q Consensus       229 ~~evl~hp~~~~~~~~  244 (251)
                      +.+|..|||..+.-..
T Consensus       366 l~~ik~Hpwvt~~g~~  381 (576)
T KOG0585|consen  366 LPDIKLHPWVTRDGDS  381 (576)
T ss_pred             hhhheecceeccCCCC
Confidence            9999999999876433

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=1.4e-39  Score=280.83  Aligned_cols=207  Identities=32%  Similarity=0.536  Sum_probs=165.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+.++||||+++++++..+..+++||||+++|+|.+.     ....+..+..++.||+.||.|||++|++|||||     
T Consensus       126 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk-----  195 (353)
T PLN00034        126 LRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGT-----HIADEQFLADVARQILSGIAYLHRRHIVHRDIK-----  195 (353)
T ss_pred             HHhCCCCCcceeeeEeccCCeEEEEEecCCCCccccc-----ccCCHHHHHHHHHHHHHHHHHHHHCCEeecCCC-----
Confidence            3578999999999999999999999999999998542     345778888999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-----
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-----  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----  155 (251)
                                                  |+||+++.++.+||+|||++..............|+..|+|||.+..     
T Consensus       196 ----------------------------p~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  247 (353)
T PLN00034        196 ----------------------------PSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHG  247 (353)
T ss_pred             ----------------------------HHHEEEcCCCCEEEcccccceecccccccccccccCccccCccccccccccC
Confidence                                        88999999999999999999765433222334568899999998843     


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhh---hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAI---FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      ...+.++|||||||++|+|++|+.||.........   ..+....  ....+..++.++.+||.+||+.||++|||++|+
T Consensus       248 ~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~el  325 (353)
T PLN00034        248 AYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQ--PPEAPATASREFRHFISCCLQREPAKRWSAMQL  325 (353)
T ss_pred             cCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhccC--CCCCCCccCHHHHHHHHHHccCChhhCcCHHHH
Confidence            23456899999999999999999999643222211   1111111  122345678999999999999999999999999


Q ss_pred             hcChhhhhccCCCCC
Q psy3253         233 LNHEFIQRHDTDPSQ  247 (251)
Q Consensus       233 l~hp~~~~~~~~~~~  247 (251)
                      ++||||.+.....++
T Consensus       326 l~hp~~~~~~~~~~~  340 (353)
T PLN00034        326 LQHPFILRAQPGQGQ  340 (353)
T ss_pred             hcCcccccCCccccc
Confidence            999999987555443

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.4e-40  Score=274.96  Aligned_cols=214  Identities=24%  Similarity=0.367  Sum_probs=175.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |+.++||||+++++.+.++...++||||+.+|+|.+++... ...+++..+..++.|++.||.|||+.|++|||||    
T Consensus        54 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk----  129 (285)
T cd05605          54 LEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLK----  129 (285)
T ss_pred             HHhcCCCCEeeeeeeecCCCeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCC----
Confidence            35689999999999999999999999999999999888643 3568999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||++....... ......++..|+|||.+.+..++
T Consensus       130 -----------------------------p~Nil~~~~~~~~l~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~  179 (285)
T cd05605         130 -----------------------------PENILLDDYGHIRISDLGLAVEIPEGE-TIRGRVGTVGYMAPEVVKNERYT  179 (285)
T ss_pred             -----------------------------HHHEEECCCCCEEEeeCCCceecCCCC-ccccccCCCCccCcHHhcCCCCC
Confidence                                         889999999999999999987543221 12234578899999999888899


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEML  233 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl  233 (251)
                      .++|+||+||++|++++|..||.+.........+... .......+..+++.+.+++.+||+.||++||     ++++++
T Consensus       180 ~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~  259 (285)
T cd05605         180 FSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVK  259 (285)
T ss_pred             ccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhhcccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHh
Confidence            9999999999999999999999765442221111110 0111223456799999999999999999999     999999


Q ss_pred             cChhhhhccCCCCCC
Q psy3253         234 NHEFIQRHDTDPSQN  248 (251)
Q Consensus       234 ~hp~~~~~~~~~~~~  248 (251)
                      +||||...+|..-++
T Consensus       260 ~~~~~~~~~~~~~~~  274 (285)
T cd05605         260 AHPFFRTANFKRLEA  274 (285)
T ss_pred             cCcCccCCCHHHHhh
Confidence            999999988775443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=100.00  E-value=2.7e-39  Score=272.79  Aligned_cols=208  Identities=41%  Similarity=0.823  Sum_probs=174.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++..+...|+||||+++++|.+++.  ...+++..+..++.|++.||.|||+.|++|||||      
T Consensus        71 ~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~------  142 (297)
T cd06656          71 RENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIK------  142 (297)
T ss_pred             HhCCCCCEeeEEEEEecCCEEEEeecccCCCCHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC------
Confidence            56899999999999999999999999999999999986  3568999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||.+..............+++.|+|||.+.+..++.+
T Consensus       143 ---------------------------p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  195 (297)
T cd06656         143 ---------------------------SDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPK  195 (297)
T ss_pred             ---------------------------HHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHcCCCCCcH
Confidence                                       88999988999999999998755433222333457888999999988889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +|+||+||++|++++|..||...+.............+....+..++..+.+++.+||..+|++||+++++++||||+..
T Consensus       196 ~Di~slGvil~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~  275 (297)
T cd06656         196 VDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLKLA  275 (297)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCcchheeeeccCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCchhccc
Confidence            99999999999999999999766554433333333333333456678899999999999999999999999999999865


Q ss_pred             cCC
Q psy3253         242 DTD  244 (251)
Q Consensus       242 ~~~  244 (251)
                      ...
T Consensus       276 ~~~  278 (297)
T cd06656         276 KPL  278 (297)
T ss_pred             ccc
Confidence            443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=3.2e-39  Score=276.58  Aligned_cols=205  Identities=37%  Similarity=0.772  Sum_probs=166.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR-RKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~-~iiH~dik~~Ni   79 (251)
                      |++++||||++++++|.++...++||||+.+|+|.+++. ....+++..+..++.|++.||.|||+. +++|||||    
T Consensus        57 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlk----  131 (333)
T cd06650          57 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVK----  131 (333)
T ss_pred             HHHCCCCcccceeEEEEECCEEEEEEecCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCC----
Confidence            357899999999999999999999999999999999997 456789999999999999999999985 79999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||++......  ......++..|+|||.+.+..++
T Consensus       132 -----------------------------p~Nili~~~~~~kL~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~  180 (333)
T cd06650         132 -----------------------------PSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPERLQGTHYS  180 (333)
T ss_pred             -----------------------------hhhEEEcCCCCEEEeeCCcchhhhhh--ccccCCCCccccCHHHhcCCCCC
Confidence                                         88889988899999999998654322  12234578899999999888899


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc--------------------------------------------CC
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI--------------------------------------------PT  195 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~--------------------------------------------~~  195 (251)
                      .++|+||+||++|++++|..||...........+                                            ..
T Consensus       181 ~~~DvwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (333)
T cd06650         181 VQSDIWSMGLSLVEMAIGRYPIPPPDAKELELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELLDYIVN  260 (333)
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCCCcchhHHHHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHHHHHHHhc
Confidence            9999999999999999999999654322211100                                            00


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         196 KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                      ...+.. ....++.++.+|+.+||++||++|||++|++.||||+...
T Consensus       261 ~~~~~~-~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h~~~~~~~  306 (333)
T cd06650         261 EPPPKL-PSGVFGAEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSE  306 (333)
T ss_pred             CCCccC-CCCCcCHHHHHHHHHhccCCcccCcCHHHHhhCHHHhcCc
Confidence            000000 0123578899999999999999999999999999998754

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.6e-39  Score=265.41  Aligned_cols=203  Identities=38%  Similarity=0.686  Sum_probs=170.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++++||+.+++|.+++. ....+++..+..++.|++.||.|||+.|++|||||     
T Consensus        58 l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~-----  131 (263)
T cd06625          58 LKNLQHERIVQYYGCLRDDETLSIFMEYMPGGSVKDQLK-AYGALTETVTRKYTRQILEGVEYLHSNMIVHRDIK-----  131 (263)
T ss_pred             HHhCCCCCeeeeEEEEccCCeEEEEEEECCCCcHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----
Confidence            357899999999999999999999999999999999987 45678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc---cccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR---NTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.++|+|||.+..........   ....++..|+|||.+.+..
T Consensus       132 ----------------------------p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  183 (263)
T cd06625         132 ----------------------------GANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEG  183 (263)
T ss_pred             ----------------------------HHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceeccCC
Confidence                                        888999888999999999986543221111   2234677899999999888


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      ++.++|+||+|+++|++++|+.||...+............. ....+..++..+.+++.+||..+|++|||+.|+++|||
T Consensus       184 ~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~  262 (263)
T cd06625         184 YGRKADVWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQPT-NPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRHFF  262 (263)
T ss_pred             CCchhhhHHHHHHHHHHHhCCCCccccchHHHHHHHhccCC-CCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhCCC
Confidence            99999999999999999999999976655444433322211 22345668999999999999999999999999999999


Q ss_pred             h
Q psy3253         238 I  238 (251)
Q Consensus       238 ~  238 (251)
                      |
T Consensus       263 ~  263 (263)
T cd06625         263 V  263 (263)
T ss_pred             C
Confidence            7

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=1.8e-39  Score=282.05  Aligned_cols=207  Identities=27%  Similarity=0.461  Sum_probs=170.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||+++++++.++...|+||||+.+|+|.+++.  ...+++..+..++.||+.||.|||++||+|||||      
T Consensus        98 ~~~~hp~iv~~~~~~~~~~~~~lv~Ey~~gg~L~~~~~--~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLk------  169 (371)
T cd05622          98 AFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS--NYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVK------  169 (371)
T ss_pred             HhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCC------
Confidence            46799999999999999999999999999999999986  3468999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-ccccccccccccccccccccCC---
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-AKRNTVIGTPFWMAPEVIQEIG---  157 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~---  157 (251)
                                                 |+||+++.++.++|+|||++....... .......||+.|+|||++.+..   
T Consensus       170 ---------------------------p~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~  222 (371)
T cd05622         170 ---------------------------PDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDG  222 (371)
T ss_pred             ---------------------------HHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCc
Confidence                                       889999999999999999997654321 1223456899999999996543   


Q ss_pred             -CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCc--cCCHHHHh
Q psy3253         158 -YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEE--RATASEML  233 (251)
Q Consensus       158 -~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~--Rps~~evl  233 (251)
                       ++.++|+||+||++|+|++|..||...+.......+... ....+.....++..+.++|.+||+.++.+  |++++|++
T Consensus       223 ~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~  302 (371)
T cd05622         223 YYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIK  302 (371)
T ss_pred             cCCCccceeehhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCcccCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHh
Confidence             788999999999999999999999877665554444332 22233334568999999999999844433  78999999


Q ss_pred             cChhhhhccC
Q psy3253         234 NHEFIQRHDT  243 (251)
Q Consensus       234 ~hp~~~~~~~  243 (251)
                      +||||++.+|
T Consensus       303 ~h~~~~~~~~  312 (371)
T cd05622         303 RHLFFKNDQW  312 (371)
T ss_pred             cCcccCCCCh
Confidence            9999988655

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.5e-39  Score=267.39  Aligned_cols=207  Identities=59%  Similarity=1.071  Sum_probs=175.5

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...|+|+||+.+++|.+++..  ..+++..+..++.|++.||.|||+++++||||+      
T Consensus        54 ~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~--~~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~------  125 (274)
T cd06609          54 SQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKP--GKLDETYIAFILREVLLGLEYLHEEGKIHRDIK------  125 (274)
T ss_pred             HHcCCCCeeeeeEEEEECCeEEEEEEeeCCCcHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC------
Confidence            467899999999999999999999999999999999873  388999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++++|||++..............++..|+|||.+.+..++.+
T Consensus       126 ---------------------------p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~  178 (274)
T cd06609         126 ---------------------------AANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEK  178 (274)
T ss_pred             ---------------------------HHHEEECCCCCEEEcccccceeecccccccccccCCccccChhhhccCCCCch
Confidence                                       88999999999999999999776544333344567788999999988889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +|+||||+++|++++|..||...+.......+.....+.... ..+++++.+++.+||..+|++|||++++++||||++.
T Consensus       179 sDv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~~~~~~~~  257 (274)
T cd06609         179 ADIWSLGITAIELAKGEPPLSDLHPMRVLFLIPKNNPPSLEG-NKFSKPFKDFVSLCLNKDPKERPSAKELLKHKFIKKA  257 (274)
T ss_pred             hhHHHHHHHHHHHHhCCCCcccCchHHHHHHhhhcCCCCCcc-cccCHHHHHHHHHHhhCChhhCcCHHHHhhChhhcCC
Confidence            999999999999999999997666555444443333323221 2278999999999999999999999999999999875


Q ss_pred             cCC
Q psy3253         242 DTD  244 (251)
Q Consensus       242 ~~~  244 (251)
                      ...
T Consensus       258 ~~~  260 (274)
T cd06609         258 KKT  260 (274)
T ss_pred             Ccc
Confidence            543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=100.00  E-value=5.4e-39  Score=274.40  Aligned_cols=210  Identities=30%  Similarity=0.581  Sum_probs=162.5

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +.++||||++++++|.+++..++||||+++|+|.+++... ...+++..++.++.|++.||.|||++|++|||||     
T Consensus        54 ~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlk-----  128 (327)
T cd08227          54 KLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVK-----  128 (327)
T ss_pred             HhcCCCCeeeEEEEEEECCEEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC-----
Confidence            4679999999999999999999999999999999999643 3568999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-------ccccccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-------KRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-------~~~~~~~~~~y~aPE~~  153 (251)
                                                  |+||+++.++.++++||+..........       ......++..|+|||++
T Consensus       129 ----------------------------p~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (327)
T cd08227         129 ----------------------------ASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVL  180 (327)
T ss_pred             ----------------------------hhhEEEecCCcEEEcccchhhccccccccccccccccccccceecccChHHh
Confidence                                        8888888888899999986543321100       01122356679999999


Q ss_pred             cc--CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCC--------------------------------
Q psy3253         154 QE--IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPP--------------------------------  199 (251)
Q Consensus       154 ~~--~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~--------------------------------  199 (251)
                      .+  ..++.++||||+||++|++++|..||.................+                                
T Consensus       181 ~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (327)
T cd08227         181 QQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTV  260 (327)
T ss_pred             hcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCcCCCCccccc
Confidence            65  45889999999999999999999999653322111110000000                                


Q ss_pred             -----------CCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         200 -----------SFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       200 -----------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                                 .......+++++.+++.+||+.||++|||++|+++||||++....
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~p~f~~~~~~  316 (327)
T cd08227         261 STPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIKRR  316 (327)
T ss_pred             CCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcChhhhhcchh
Confidence                       000112356789999999999999999999999999999876543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.5e-39  Score=265.68  Aligned_cols=204  Identities=54%  Similarity=1.039  Sum_probs=170.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...|++|||+.+++|.+++......+++..+..++.|++.||.|||+.|++|+|||     
T Consensus        54 l~~~~h~~i~~~~~~~~~~~~~~l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~-----  128 (262)
T cd06613          54 LKECRHPNIVAYFGSYLRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIK-----  128 (262)
T ss_pred             HHhCCCCChhceEEEEEeCCEEEEEEeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCC-----
Confidence            457899999999999999999999999999999999997655789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccC---C
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI---G  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~---~  157 (251)
                                                  |+||+++.++.++|+|||.+..............++..|+|||.+.+.   .
T Consensus       129 ----------------------------p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~  180 (262)
T cd06613         129 ----------------------------GANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGG  180 (262)
T ss_pred             ----------------------------hhhEEECCCCCEEECccccchhhhhhhhccccccCCccccCchhhcccccCC
Confidence                                        889999999999999999987654432233344577889999999776   7


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC--CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++.++|+||+|+++|+|++|.+||...+...........  .+........++.++.+++.+||..+|++|||+++++.|
T Consensus       181 ~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  260 (262)
T cd06613         181 YDGKCDIWALGITAIELAELQPPMFDLHPMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQH  260 (262)
T ss_pred             cCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence            889999999999999999999999776554444333222  112222234567889999999999999999999999999


Q ss_pred             hh
Q psy3253         236 EF  237 (251)
Q Consensus       236 p~  237 (251)
                      +|
T Consensus       261 ~~  262 (262)
T cd06613         261 PF  262 (262)
T ss_pred             CC
Confidence            98

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>PHA03207 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.4e-39  Score=282.25  Aligned_cols=210  Identities=21%  Similarity=0.275  Sum_probs=169.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++......|++||++. ++|.+++. ....+++..++.++.||+.||.|||++||+|||||     
T Consensus       140 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~-~~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlk-----  212 (392)
T PHA03207        140 LKTISHRAIINLIHAYRWKSTVCMVMPKYK-CDLFTYVD-RSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVK-----  212 (392)
T ss_pred             HHhcCCCCccceeeeEeeCCEEEEEehhcC-CCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----
Confidence            467899999999999999999999999995 68988884 56789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.++|+|||++........  ......||+.|+|||++.+..+
T Consensus       213 ----------------------------p~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  264 (392)
T PHA03207        213 ----------------------------TENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPY  264 (392)
T ss_pred             ----------------------------HHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCC
Confidence                                        8889999999999999999976543211  1233468999999999998899


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchh---hhh----c----------------------CCCCCCCCCC-----C
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRA---IFM----I----------------------PTKPPPSFRE-----P  204 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~---~~~----~----------------------~~~~~~~~~~-----~  204 (251)
                      +.++||||+||++|+|++|..||.+......   ...    +                      .....+.+..     .
T Consensus       265 ~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (392)
T PHA03207        265 CAKTDIWSAGLVLFEMSVKNVTLFGKQVKSSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVIRK  344 (392)
T ss_pred             CchhhHHHHHHHHHHHHHCCCCCCCCCCCCcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCccccchhhc
Confidence            9999999999999999999999965432110   000    0                      0000000111     1


Q ss_pred             CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         205 DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       205 ~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      ..++.++.++|.+||..||++|||++|+++||||+..+++.
T Consensus       345 ~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~p~f~~~~~~~  385 (392)
T PHA03207        345 YGMHMDVEYLIAKMLTFDQEFRPSAQDILSLPLFTKEPINL  385 (392)
T ss_pred             cCcchhHHHHHHHHhccChhhCCCHHHHhhCchhhccchhh
Confidence            23567889999999999999999999999999999877764

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=100.00  E-value=6e-39  Score=264.06  Aligned_cols=203  Identities=29%  Similarity=0.607  Sum_probs=172.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.++...|+||||+.+++|.+++... ...+++..+..++.|++.||.|||+.|++|+|||    
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~----  128 (256)
T cd08529          53 LAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIK----  128 (256)
T ss_pred             HHhcCCCCeehheeeeccCCEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC----
Confidence            35789999999999999999999999999999999999754 4678999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||++..............++..|+|||++.+..++
T Consensus       129 -----------------------------~~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  179 (256)
T cd08529         129 -----------------------------SLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYN  179 (256)
T ss_pred             -----------------------------cceEEEeCCCCEEEcccccceeccCccchhhccccCccccCHHHhcCCCCC
Confidence                                         889999988999999999987654433333334577889999999888899


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .++|+||||+++|++++|..||...+.......+.....+.  .+..++.++.+++.+||+.+|++||++.|++.|||+
T Consensus       180 ~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  256 (256)
T cd08529         180 EKSDVWALGVVLYECCTGKHPFDANNQGALILKIIRGVFPP--VSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRNPSL  256 (256)
T ss_pred             CccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCC--CccccCHHHHHHHHHHccCCcccCcCHHHHhhCCCC
Confidence            99999999999999999999997766555444443332222  233678999999999999999999999999999985

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=3.2e-39  Score=286.09  Aligned_cols=208  Identities=25%  Similarity=0.392  Sum_probs=161.3

Q ss_pred             CCCCCCCccceeeeeEeeC--------CeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCCc
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--------TDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRRK   69 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--------~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~i   69 (251)
                      |++++||||++++++|...        ..+++||||+. ++|.+++..   ....+++..++.++.||+.||.|||++||
T Consensus       113 l~~l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~-~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~I  191 (440)
T PTZ00036        113 MKNLNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIP-QTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFI  191 (440)
T ss_pred             HHhcCCCCCcceeeeEeecccccCCCceEEEEEEecCC-ccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCE
Confidence            4678999999999887532        24779999996 478777752   34679999999999999999999999999


Q ss_pred             cccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCC-CeEecccccccccCcccccccccccccccc
Q psy3253          70 IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLADFGVAGQLTDTMAKRNTVIGTPFWM  148 (251)
Q Consensus        70 iH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~  148 (251)
                      +|||||                                 |+||+++.++ .+||+|||+++..... .......+++.|+
T Consensus       192 iHrDLK---------------------------------p~NILl~~~~~~vkL~DFGla~~~~~~-~~~~~~~~t~~y~  237 (440)
T PTZ00036        192 CHRDLK---------------------------------PQNLLIDPNTHTLKLCDFGSAKNLLAG-QRSVSYICSRFYR  237 (440)
T ss_pred             ecCCcC---------------------------------HHHEEEcCCCCceeeeccccchhccCC-CCcccCCCCcCcc
Confidence            999988                                 7788887554 6999999999765432 2223346788999


Q ss_pred             ccccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CCC----------------C-------CC
Q psy3253         149 APEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KPP----------------P-------SF  201 (251)
Q Consensus       149 aPE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~~----------------~-------~~  201 (251)
                      |||++.+ ..++.++||||+||++|+|++|.+||.+.........+..   .+.                +       ..
T Consensus       238 aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~  317 (440)
T PTZ00036        238 APELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKK  317 (440)
T ss_pred             CHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHH
Confidence            9999865 4689999999999999999999999976544322221110   000                0       00


Q ss_pred             CCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         202 REPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       202 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                      ..+...++++.+||.+||++||++|||++|+++||||+....
T Consensus       318 ~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~~  359 (440)
T PTZ00036        318 VFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLRD  359 (440)
T ss_pred             HhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhhc
Confidence            013346789999999999999999999999999999987654

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=100.00  E-value=6e-39  Score=265.35  Aligned_cols=207  Identities=33%  Similarity=0.609  Sum_probs=174.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...++++||+.+++|.+++. +...+++..+..++.|++.||+|||++|++|+|||      
T Consensus        48 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~------  120 (262)
T cd05572          48 EECNHPFIVKLYRTFKDKKYIYMLMEYCLGGELWTILR-DRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLK------  120 (262)
T ss_pred             HhCCCCCEeeeeeeEEcCCccEEEEecCCCCcHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC------
Confidence            56899999999999999999999999999999999997 34568999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||.+....... ......++..|+|||.+.+..++.+
T Consensus       121 ---------------------------~~nilv~~~~~~~l~df~~~~~~~~~~-~~~~~~~~~~~~~PE~~~~~~~~~~  172 (262)
T cd05572         121 ---------------------------PENLLLDSNGYVKLVDFGFAKKLKSGQ-KTWTFCGTPEYVAPEIILNKGYDFS  172 (262)
T ss_pred             ---------------------------HHHEEEcCCCCEEEeeCCcccccCccc-ccccccCCcCccChhHhcCCCCCCh
Confidence                                       889999889999999999997665432 2233456888999999988889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCC--cchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIH--PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEMLN  234 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl~  234 (251)
                      +|+||+|+++|++++|..||....  .......+... ......+...++++.++|.+||..+|++||+     ++|+++
T Consensus       173 ~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         173 VDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDILKG-NGKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             hhhhhhHHHHHHHHhCCCCcCCCCCCHHHHHHHHhcc-CCCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhc
Confidence            999999999999999999997665  33333333321 1122334455899999999999999999999     999999


Q ss_pred             ChhhhhccCC
Q psy3253         235 HEFIQRHDTD  244 (251)
Q Consensus       235 hp~~~~~~~~  244 (251)
                      ||||+..+|+
T Consensus       252 ~~~~~~~~~~  261 (262)
T cd05572         252 HKWFNGFDWE  261 (262)
T ss_pred             ChhhhCCCCC
Confidence            9999998886

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>KOG1026|consensus

Probab=100.00  E-value=1.6e-39  Score=291.88  Aligned_cols=198  Identities=25%  Similarity=0.450  Sum_probs=175.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-------------CCCCHHHHHHHHHHHHHHHHHHHhC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-------------KTLSEDEIATILCDTLKGLEYLHLR   67 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-------------~~l~~~~~~~~~~~i~~~l~~LH~~   67 (251)
                      |..|+|||||+++|+|.+++..|||||||..|||.+|++.+.             .+++..+.+.++.||+.|+.||-++
T Consensus       543 la~l~H~nIVrLlGVC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~  622 (774)
T KOG1026|consen  543 LAELQHPNIVRLLGVCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH  622 (774)
T ss_pred             HHhccCCCeEEEEEEEccCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            457999999999999999999999999999999999997432             1388999999999999999999999


Q ss_pred             CccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-ccc-cccccc
Q psy3253          68 RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRN-TVIGTP  145 (251)
Q Consensus        68 ~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~-~~~~~~  145 (251)
                      .++||||-                                 .+|++++.+..+||+|||+++..-.... +.. ...-+.
T Consensus       623 ~FVHRDLA---------------------------------TRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPI  669 (774)
T KOG1026|consen  623 HFVHRDLA---------------------------------TRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPI  669 (774)
T ss_pred             cccccchh---------------------------------hhhceeccceEEEecccccchhhhhhhhhcccCCceeee
Confidence            99999965                                 8899999999999999999987643322 222 234577


Q ss_pred             ccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcC
Q psy3253         146 FWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE  224 (251)
Q Consensus       146 ~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  224 (251)
                      +|||||.+...+|+.+|||||+||++||+++ |.-||.+....+.+..+..+.-  ++.|..+|.++.+||..||+.+|+
T Consensus       670 RWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g~l--L~~Pe~CP~~vY~LM~~CW~~~P~  747 (774)
T KOG1026|consen  670 RWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAGQL--LSCPENCPTEVYSLMLECWNENPK  747 (774)
T ss_pred             ecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcCCc--ccCCCCCCHHHHHHHHHHhhcCcc
Confidence            8999999999999999999999999999998 9999999999999988877653  677999999999999999999999


Q ss_pred             ccCCHHHHh
Q psy3253         225 ERATASEML  233 (251)
Q Consensus       225 ~Rps~~evl  233 (251)
                      +||+++||-
T Consensus       748 ~RPsF~eI~  756 (774)
T KOG1026|consen  748 RRPSFKEIH  756 (774)
T ss_pred             cCCCHHHHH
Confidence            999999984

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=100.00  E-value=4.5e-39  Score=271.70  Aligned_cols=209  Identities=22%  Similarity=0.415  Sum_probs=167.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++||||+. ++|.+++......+++..+..++.|++.||.|||+.|++|+|||     
T Consensus        58 l~~l~h~nI~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlk-----  131 (301)
T cd07873          58 LKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLK-----  131 (301)
T ss_pred             HHhcCCCCcceEEEEEecCCeEEEEEeccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC-----
Confidence            357899999999999999999999999996 59999887666779999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.++|+|||++..............+++.|+|||.+.+ ..++
T Consensus       132 ----------------------------p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~  183 (301)
T cd07873         132 ----------------------------PQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYS  183 (301)
T ss_pred             ----------------------------HHHEEECCCCcEEECcCcchhccCCCCCcccccceeecccCcHHHhCCCCCc
Confidence                                        88899998999999999998754433222233456788999999865 4578


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CCC------------------CCCC------CCCCCCCHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TKP------------------PPSF------REPDVWTPEFI  212 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~~------------------~~~~------~~~~~~~~~~~  212 (251)
                      .++||||+||++|+|++|++||...+.......+.   ...                  .+..      .....+++.+.
T Consensus       184 ~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (301)
T cd07873         184 TQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKSYNYPKYRADCLHNHAPRLDSDGA  263 (301)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhchhhhccccccccccCccccccHHhhcCCCCHHHH
Confidence            89999999999999999999997655432221100   000                  0000      01234688899


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                      ++|.+||+.||.+|||++|+++||||+....
T Consensus       264 ~li~~ml~~dp~~R~t~~eil~h~~f~~~~~  294 (301)
T cd07873         264 ELLSKLLQFEGRKRISAEEAMKHPYFHCLGE  294 (301)
T ss_pred             HHHHHHhcCCcccCcCHHHHhcCcccccccc
Confidence            9999999999999999999999999986653

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=100.00  E-value=8.9e-39  Score=265.04  Aligned_cols=202  Identities=50%  Similarity=0.950  Sum_probs=166.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++..+...+++|||+++++|.+++. ..+.+++.+++.++.|++.||.|||+.|++|+|||      
T Consensus        61 ~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk------  133 (267)
T cd06645          61 KDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYH-VTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIK------  133 (267)
T ss_pred             HhCCCCCeeeEEEEEEeCCEEEEEEeccCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC------
Confidence            56899999999999999999999999999999999986 45689999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc---cCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---EIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~  158 (251)
                                                 |+||+++.++.++|+|||.+..............++..|+|||.+.   ...+
T Consensus       134 ---------------------------p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  186 (267)
T cd06645         134 ---------------------------GANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGY  186 (267)
T ss_pred             ---------------------------HHHEEECCCCCEEECcceeeeEccCcccccccccCcccccChhhhccccCCCC
Confidence                                       8888888889999999999865543333334456788999999874   4557


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC--CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      +.++|+||+||++|++++|..||...............  .+........++..+.+++.+||..+|++|||++++++||
T Consensus       187 ~~~~DvwSlG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~~~  266 (267)
T cd06645         187 NQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQHP  266 (267)
T ss_pred             CchhhhHHHHHHHHHHhcCCCCcccccchhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhCcCHHHHhcCC
Confidence            88999999999999999999998655443333222111  1112222335788999999999999999999999999999


Q ss_pred             h
Q psy3253         237 F  237 (251)
Q Consensus       237 ~  237 (251)
                      |
T Consensus       267 ~  267 (267)
T cd06645         267 F  267 (267)
T ss_pred             C
Confidence            8

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0658|consensus

Probab=100.00  E-value=6.7e-40  Score=269.99  Aligned_cols=210  Identities=27%  Similarity=0.456  Sum_probs=168.5

Q ss_pred             CCCCCCCccceeeeeEeeC-----CeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKN-----TDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRRKIHR   72 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~-----~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~   72 (251)
                      |+.++|||||++.-+|...     -...+||||+.. +|.++++.   .+..++.-.++-+..||..||.|||+.||+||
T Consensus        71 m~~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHR  149 (364)
T KOG0658|consen   71 MRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHR  149 (364)
T ss_pred             HHhcCCcCeeeEEEEEEecCCCchhHHHHHHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccC
Confidence            5678999999998877532     246799999965 99999973   36788999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCC-CCeEecccccccccCccccccccccccccccccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPE  151 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  151 (251)
                      |||                                 |+|++++.+ |.+||||||.|+..-.. .....-.+|+.|+|||
T Consensus       150 DIK---------------------------------PqNlLvD~~tg~LKicDFGSAK~L~~~-epniSYicSRyYRaPE  195 (364)
T KOG0658|consen  150 DIK---------------------------------PQNLLVDPDTGVLKICDFGSAKVLVKG-EPNISYICSRYYRAPE  195 (364)
T ss_pred             CCC---------------------------------hheEEEcCCCCeEEeccCCcceeeccC-CCceeEEEeccccCHH
Confidence            999                                 999999866 78999999999876543 2334456789999999


Q ss_pred             cccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---CCCCC----------------CCCC-------CC
Q psy3253         152 VIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---PTKPP----------------PSFR-------EP  204 (251)
Q Consensus       152 ~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---~~~~~----------------~~~~-------~~  204 (251)
                      .+.+ ..|+.+.||||.||++.||+-|++.|.+.+.......+   .+.+.                +...       ..
T Consensus       196 Lifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~  275 (364)
T KOG0658|consen  196 LIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFF  275 (364)
T ss_pred             HHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecc
Confidence            9976 66999999999999999999999999765444333222   11110                0000       12


Q ss_pred             CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         205 DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       205 ~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      ...+++..+|+.++|+++|++|.++.|++.||||+......
T Consensus       276 ~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr~~~  316 (364)
T KOG0658|consen  276 KRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDELRDPN  316 (364)
T ss_pred             cCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHhhCcC
Confidence            44689999999999999999999999999999999876654

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=9.8e-39  Score=264.65  Aligned_cols=202  Identities=37%  Similarity=0.671  Sum_probs=170.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....+++|||+.+++|.+++. ....+++..+..++.|++.||.|||+.|++||||+     
T Consensus        60 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~-----  133 (267)
T cd06628          60 LKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLN-NYGAFEETLVRNFVRQILKGLNYLHNRGIIHRDIK-----  133 (267)
T ss_pred             HHhcCCCCeeeEEEEEEeCCccEEEEEecCCCCHHHHHH-hccCccHHHHHHHHHHHHHHHHHHHhcCcccccCC-----
Confidence            357899999999999999999999999999999999997 45678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc------cccccccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA------KRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~------~~~~~~~~~~y~aPE~~~  154 (251)
                                                  |+||+++.++.++|+|||.++.......      ......++..|+|||.+.
T Consensus       134 ----------------------------p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~  185 (267)
T cd06628         134 ----------------------------GANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVK  185 (267)
T ss_pred             ----------------------------HHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhc
Confidence                                        8899999999999999999876542111      112234677899999998


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +..++.++|+||+||++|++++|+.||...+.......+.....+  ..+..++..+.++|++||+.||++||+++|+++
T Consensus       186 ~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         186 QTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQAIFKIGENASP--EIPSNISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             cCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHHHHHHHhccCCC--cCCcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence            888899999999999999999999999876554444333332222  234567899999999999999999999999999


Q ss_pred             Chhh
Q psy3253         235 HEFI  238 (251)
Q Consensus       235 hp~~  238 (251)
                      ||||
T Consensus       264 ~~~~  267 (267)
T cd06628         264 HPFL  267 (267)
T ss_pred             CCCC
Confidence            9997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=100.00  E-value=8.5e-39  Score=268.63  Aligned_cols=205  Identities=31%  Similarity=0.552  Sum_probs=176.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...|+||||+.+++|.+++. ....+++..+..++.|++.||.|||+.|++|+||+     
T Consensus        55 l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~-~~~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~-----  128 (290)
T cd05580          55 LQSIRHPFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLR-KSGRFPEPVARFYAAQVVLALEYLHSLDIVYRDLK-----  128 (290)
T ss_pred             HHhCCCCCccceeeEEEcCCeEEEEEecCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC-----
Confidence            357899999999999999999999999999999999997 44789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++......   .....+++.|+|||.+.+...+.
T Consensus       129 ----------------------------p~nili~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~  177 (290)
T cd05580         129 ----------------------------PENLLLDSDGYIKITDFGFAKRVKGR---TYTLCGTPEYLAPEIILSKGYGK  177 (290)
T ss_pred             ----------------------------HHHEEECCCCCEEEeeCCCccccCCC---CCCCCCCccccChhhhcCCCCCc
Confidence                                        88999999999999999999765433   23345788899999998888899


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~h  235 (251)
                      ++|+||||+++|+|++|..||...+.......+...   ....+..+++.+.+++.+||..||++|+     +++|+++|
T Consensus       178 ~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~  254 (290)
T cd05580         178 AVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEG---KVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNH  254 (290)
T ss_pred             cccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcC---CccCCccCCHHHHHHHHHHccCCHHHccCcccCCHHHHHcC
Confidence            999999999999999999999776654444333322   1223556789999999999999999999     99999999


Q ss_pred             hhhhhccCCC
Q psy3253         236 EFIQRHDTDP  245 (251)
Q Consensus       236 p~~~~~~~~~  245 (251)
                      |||+..+|..
T Consensus       255 ~~~~~~~~~~  264 (290)
T cd05580         255 PWFAGIDWIA  264 (290)
T ss_pred             cccccCCHHH
Confidence            9999988754

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=100.00  E-value=3.9e-39  Score=271.19  Aligned_cols=208  Identities=38%  Similarity=0.756  Sum_probs=173.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++.+..++..|+||||+.+++|.+++.  ...+++..+..++.||+.||.|||++|++|||||      
T Consensus        74 ~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlk------  145 (292)
T cd06658          74 RDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVT--HTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIK------  145 (292)
T ss_pred             HhCCCCcHHHHHHheecCCeEEEEEeCCCCCcHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCEeecCCC------
Confidence            56899999999999999999999999999999999875  3568999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||++..............++..|+|||.+.+..++.+
T Consensus       146 ---------------------------p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  198 (292)
T cd06658         146 ---------------------------SDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTE  198 (292)
T ss_pred             ---------------------------HHHEEEcCCCCEEEccCcchhhcccccccCceeecCccccCHHHHccCCCCch
Confidence                                       88999988999999999998654433222333457888999999988889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +|+||+|+++|++++|..||...+.......+..............+..+.+++.+||..||++|||++|+++||||+..
T Consensus       199 ~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~~~~  278 (292)
T cd06658         199 VDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDNLPPRVKDSHKVSSVLRGFLDLMLVREPSQRATAQELLQHPFLKLA  278 (292)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCccccccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhhcc
Confidence            99999999999999999999766554443333222222333344578899999999999999999999999999999865


Q ss_pred             cCC
Q psy3253         242 DTD  244 (251)
Q Consensus       242 ~~~  244 (251)
                      ...
T Consensus       279 ~~~  281 (292)
T cd06658         279 GPP  281 (292)
T ss_pred             CCc
Confidence            443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>PHA02988 hypothetical protein; Provisional

Probab=100.00  E-value=8.3e-39  Score=268.13  Aligned_cols=196  Identities=21%  Similarity=0.343  Sum_probs=164.0

Q ss_pred             CCCCCCCccceeeeeEee----CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~----~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik   75 (251)
                      |++++||||+++++++.+    ....++||||+.+|+|.+++. ....+++.....++.+++.||.|||+ .+++|||||
T Consensus        72 l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlk  150 (283)
T PHA02988         72 LRRIDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLD-KEKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLT  150 (283)
T ss_pred             HHhcCCCCEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHh-hCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCC
Confidence            468899999999999876    346899999999999999997 45678999999999999999999998 499999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.+||+|||++......   .....++..|+|||.+.+
T Consensus       151 ---------------------------------p~nill~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~  194 (283)
T PHA02988        151 ---------------------------------SVSFLVTENYKLKIICHGLEKILSSP---PFKNVNFMVYFSYKMLND  194 (283)
T ss_pred             ---------------------------------hhhEEECCCCcEEEcccchHhhhccc---cccccCcccccCHHHhhh
Confidence                                             88999999999999999998754432   123456788999999976


Q ss_pred             --CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         156 --IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       156 --~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                        ..++.++|||||||++|+|++|..||.+.+.......+..... ....+..+++++.+++.+||+.||++|||++|++
T Consensus       195 ~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~~~~~~i~~~~~-~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell  273 (283)
T PHA02988        195 IFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTKEIYDLIINKNN-SLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEIL  273 (283)
T ss_pred             ccccccchhhhhHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCC-CCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHH
Confidence              6789999999999999999999999987766555444322211 2223446799999999999999999999999998


Q ss_pred             c
Q psy3253         234 N  234 (251)
Q Consensus       234 ~  234 (251)
                      +
T Consensus       274 ~  274 (283)
T PHA02988        274 Y  274 (283)
T ss_pred             H
Confidence            5

>PHA03209 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=7.2e-39  Score=276.90  Aligned_cols=205  Identities=25%  Similarity=0.338  Sum_probs=160.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...++|||++. ++|.+++......+++..++.++.||+.||.|||++||+|||||     
T Consensus       111 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk-----  184 (357)
T PHA03209        111 LQNVNHPSVIRMKDTLVSGAITCMVLPHYS-SDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVK-----  184 (357)
T ss_pred             HHhCCCCCCcChhheEEeCCeeEEEEEccC-CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----
Confidence            467899999999999999999999999995 58999887667789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||.++..... .......||..|+|||++.+..++.
T Consensus       185 ----------------------------p~Nill~~~~~~kl~DfG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~  235 (357)
T PHA03209        185 ----------------------------TENIFINDVDQVCIGDLGAAQFPVVA-PAFLGLAGTVETNAPEVLARDKYNS  235 (357)
T ss_pred             ----------------------------HHHEEECCCCCEEEecCccccccccC-cccccccccccccCCeecCCCCCCc
Confidence                                        88888888899999999998643222 1223345788999999999889999


Q ss_pred             chhHHHHHHHHHHHHhCCC-CCCCCCcc----------hhhhhc--CCCCCCCCC-------------------------
Q psy3253         161 VADMWSLGITALEMAEGKP-PYGDIHPM----------RAIFMI--PTKPPPSFR-------------------------  202 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~-p~~~~~~~----------~~~~~~--~~~~~~~~~-------------------------  202 (251)
                      ++|||||||++|+|+++.. +|......          .....+  ....+..+.                         
T Consensus       236 ~~DiwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (357)
T PHA03209        236 KADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLERQPYTRY  315 (357)
T ss_pred             hhhHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccCCCccccc
Confidence            9999999999999998544 44322111          000000  000000000                         


Q ss_pred             ---CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         203 ---EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       203 ---~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                         ....++.++.++|.+||+.||++|||++|+|+||||++
T Consensus       316 ~~~~~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~hp~f~~  356 (357)
T PHA03209        316 PCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILNYPMFAQ  356 (357)
T ss_pred             HHHhccCCCchHHHHHHHHHcCCcccCcCHHHHhcCchhcc
Confidence               01235667888999999999999999999999999986

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.3e-39  Score=275.05  Aligned_cols=211  Identities=25%  Similarity=0.407  Sum_probs=170.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||++++++|.++.+.|+||||+.+|+|.+++......+++..++.++.||+.||.|||++|++|||||      
T Consensus        56 ~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk------  129 (331)
T cd05597          56 VNGDRRWITNLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIK------  129 (331)
T ss_pred             HhCCCCCCCceEEEEecCCeEEEEEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCC------
Confidence            45789999999999999999999999999999999997656789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-ccccccccccccccccccc-----
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQE-----  155 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~-----  155 (251)
                                                 |+||+++.++.++|+|||++........ ......|++.|+|||++..     
T Consensus       130 ---------------------------p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  182 (331)
T cd05597         130 ---------------------------PDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGK  182 (331)
T ss_pred             ---------------------------HHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhccccc
Confidence                                       8889998899999999999865443222 2223458999999999863     


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCC-CCCCCCCCHHHHHHHHHhhhcCcCc--cCCHHH
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPS-FREPDVWTPEFIDFVSRCLVKNPEE--RATASE  231 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~li~~~l~~~p~~--Rps~~e  231 (251)
                      ..++.++||||+||++|+|++|..||.+.........+.... ... ......+++++.+++.+||..++++  |+++++
T Consensus       183 ~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~  262 (331)
T cd05597         183 GRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKEHFQFPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQD  262 (331)
T ss_pred             cCCCCcceeehhhhHHHHHhhCCCCCCCCCHHHHHHHHHcCCCcccCCCccCCCCHHHHHHHHHHccCcccccCCCCHHH
Confidence            457789999999999999999999997765544433332211 111 1122347899999999988664443  789999


Q ss_pred             HhcChhhhhccCCC
Q psy3253         232 MLNHEFIQRHDTDP  245 (251)
Q Consensus       232 vl~hp~~~~~~~~~  245 (251)
                      +++||||...+|..
T Consensus       263 ~l~hp~~~~~~~~~  276 (331)
T cd05597         263 FKDHPFFEGIDWDN  276 (331)
T ss_pred             HhcCCCCCCCCHHH
Confidence            99999998877644

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=100.00  E-value=8e-39  Score=269.95  Aligned_cols=208  Identities=40%  Similarity=0.792  Sum_probs=176.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...|+++||+++++|.+++.  ...+++..++.++.|++.||.|||++|++|||||     
T Consensus        72 l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~-----  144 (297)
T cd06659          72 MRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDIVS--QTRLNEEQIATVCESVLQALCYLHSQGVIHRDIK-----  144 (297)
T ss_pred             HHhCCCCchhhhhhheeeCCeEEEEEecCCCCCHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----
Confidence            356899999999999999999999999999999999875  3568999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++..............++..|+|||.+.+..++.
T Consensus       145 ----------------------------p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  196 (297)
T cd06659         145 ----------------------------SDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGT  196 (297)
T ss_pred             ----------------------------HHHeEEccCCcEEEeechhHhhcccccccccceecCccccCHHHHccCCCCc
Confidence                                        8888898899999999999865543333334456788999999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++|+||+||++|+|++|..||...+.......+.............++..+.+++.+||+.+|++||+++|+++||||..
T Consensus       197 ~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~~~~~~  276 (297)
T cd06659         197 EVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATAQELLDHPFLLQ  276 (297)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhChhhcc
Confidence            99999999999999999999976655554444433333333345567889999999999999999999999999999987


Q ss_pred             ccC
Q psy3253         241 HDT  243 (251)
Q Consensus       241 ~~~  243 (251)
                      ...
T Consensus       277 ~~~  279 (297)
T cd06659         277 TGL  279 (297)
T ss_pred             CCC
Confidence            654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=7.7e-39  Score=276.86  Aligned_cols=204  Identities=25%  Similarity=0.452  Sum_probs=160.4

Q ss_pred             CCCCCCCccceeeeeEeeCC------eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT------DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~------~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |+.++||||+++++++....      ..|+||||+++ +|.+.+.   ..+++..+..++.|++.||.|||++|++||||
T Consensus        74 l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~---~~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDl  149 (359)
T cd07876          74 LKCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVIH---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDL  149 (359)
T ss_pred             HHhCCCCCEeeeeeeeccCCCccccceeEEEEeCCCc-CHHHHHh---ccCCHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            35789999999999986443      47999999965 6777664   45889999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                      |                                 |+||+++.++.++|+|||++...... .......+|+.|+|||++.
T Consensus       150 k---------------------------------p~NIl~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~t~~y~aPE~~~  195 (359)
T cd07876         150 K---------------------------------PSNIVVKSDCTLKILDFGLARTACTN-FMMTPYVVTRYYRAPEVIL  195 (359)
T ss_pred             C---------------------------------HHHEEECCCCCEEEecCCCccccccC-ccCCCCcccCCCCCchhcc
Confidence            8                                 88999999999999999999754322 1223346788999999999


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC-----------------------CCCC-C-----------
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP-----------------------TKPP-P-----------  199 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~-----------------------~~~~-~-----------  199 (251)
                      +..++.++||||+||++|+|++|..||.+.+.......+.                       .... .           
T Consensus       196 ~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (359)
T cd07876         196 GMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDW  275 (359)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhcccc
Confidence            9899999999999999999999999997654322111000                       0000 0           


Q ss_pred             ----CCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         200 ----SFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       200 ----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                          ........++++.+||.+||..||++|||++|+++||||+...
T Consensus       276 ~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~~  322 (359)
T cd07876         276 IFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHPYITVWY  322 (359)
T ss_pred             ccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcCchhhhhc
Confidence                0001122467899999999999999999999999999998643

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=4.5e-39  Score=275.55  Aligned_cols=211  Identities=24%  Similarity=0.422  Sum_probs=172.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||+++++++.+....|+||||+.+|+|.+++......+++..++.++.||+.||.|||++|++|||||      
T Consensus        56 ~~~~~~~i~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlk------  129 (332)
T cd05623          56 VNGDNQWITTLHYAFQDENNLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIK------  129 (332)
T ss_pred             hhCCCCCEeeEEEEEecCCEEEEEEeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC------
Confidence            46789999999999999999999999999999999998656789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccc-----c
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQ-----E  155 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~-----~  155 (251)
                                                 |+||+++.++.++|+|||++........ ......||+.|+|||++.     .
T Consensus       130 ---------------------------p~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  182 (332)
T cd05623         130 ---------------------------PDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGK  182 (332)
T ss_pred             ---------------------------HHHEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHHhccccCC
Confidence                                       8899999999999999999865432211 223346899999999985     3


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC-CCC-CCCCCCCHHHHHHHHHhhhcCcCc--cCCHHH
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP-PSF-REPDVWTPEFIDFVSRCLVKNPEE--RATASE  231 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~li~~~l~~~p~~--Rps~~e  231 (251)
                      ..++.++|+|||||++|+|++|..||...+.......+..... ..+ .....+++++.+++.+||..++++  |++++|
T Consensus       183 ~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~  262 (332)
T cd05623         183 GKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSREHRLGQNGIED  262 (332)
T ss_pred             CCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCccccCCCccccCCHHHHHHHHHHccChhhhcCCCCHHH
Confidence            4578899999999999999999999987766555544433211 111 123457999999999999765544  689999


Q ss_pred             HhcChhhhhccCCC
Q psy3253         232 MLNHEFIQRHDTDP  245 (251)
Q Consensus       232 vl~hp~~~~~~~~~  245 (251)
                      +++||||+..+|+.
T Consensus       263 ~~~h~~f~~~~~~~  276 (332)
T cd05623         263 FKQHPFFTGIDWDN  276 (332)
T ss_pred             HhCCCCcCCCCHHH
Confidence            99999999877644

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=100.00  E-value=1.2e-38  Score=267.66  Aligned_cols=204  Identities=49%  Similarity=0.926  Sum_probs=167.7

Q ss_pred             CC-CCCccceeeeeEeeC-----CeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccC
Q psy3253           3 QC-DSPYVVKYYGSYFKN-----TDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRD   73 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~-----~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~d   73 (251)
                      ++ +|||++++++++.+.     ...++||||+.+++|.++++.   ....+++..++.++.|++.||.|||+.|++|||
T Consensus        74 ~l~~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~d  153 (291)
T cd06639          74 SLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRD  153 (291)
T ss_pred             HhcCCCCeEEEEEEEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccC
Confidence            34 799999999998753     358999999999999998853   345789999999999999999999999999999


Q ss_pred             CCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccc
Q psy3253          74 IKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        74 ik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  153 (251)
                      ||                                 |+||+++.++.++|+|||.+..............++..|+|||.+
T Consensus       154 lk---------------------------------p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  200 (291)
T cd06639         154 VK---------------------------------GNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVI  200 (291)
T ss_pred             CC---------------------------------HHHEEEcCCCCEEEeecccchhcccccccccCccCCccccChhhh
Confidence            88                                 888899888999999999987654332233344577889999998


Q ss_pred             ccC-----CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC
Q psy3253         154 QEI-----GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT  228 (251)
Q Consensus       154 ~~~-----~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  228 (251)
                      ...     .++.++|+||+||++|++++|.+||...+.......+..........+..++..+.++|.+||+.+|++||+
T Consensus       201 ~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps  280 (291)
T cd06639         201 ACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPEKWCRSFNHFISQCLIKDFEARPS  280 (291)
T ss_pred             cCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHhhcChhhCcC
Confidence            543     367899999999999999999999987665554444444433333345567889999999999999999999


Q ss_pred             HHHHhcChhhh
Q psy3253         229 ASEMLNHEFIQ  239 (251)
Q Consensus       229 ~~evl~hp~~~  239 (251)
                      ++|+++||||+
T Consensus       281 ~~~il~~~~~~  291 (291)
T cd06639         281 VTHLLEHPFIK  291 (291)
T ss_pred             HHHHhcCcccC
Confidence            99999999995

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=100.00  E-value=1.7e-38  Score=269.22  Aligned_cols=208  Identities=38%  Similarity=0.745  Sum_probs=169.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni   79 (251)
                      |++++||||++++++|.+++..++||||+++++|.++++ ....+++..+..++.|++.||.|||+ .+++|+|||    
T Consensus        53 l~~l~h~~iv~~~~~~~~~~~~~lv~ey~~~~~L~~~l~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~----  127 (308)
T cd06615          53 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPENILGKISIAVLRGLTYLREKHKIMHRDVK----  127 (308)
T ss_pred             HHhCCCCCCCeEEEEEeeCCEEEEEeeccCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCC----
Confidence            357899999999999999999999999999999999997 44778999999999999999999998 599999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||++......  ......++..|+|||.+.+..++
T Consensus       128 -----------------------------p~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~  176 (308)
T cd06615         128 -----------------------------PSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPERLQGTHYT  176 (308)
T ss_pred             -----------------------------hHHEEEecCCcEEEccCCCccccccc--ccccCCCCcCccChhHhcCCCCC
Confidence                                         88999988999999999998654322  12334578889999999888889


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC------------------------------------CCCCCCC
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK------------------------------------PPPSFRE  203 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~------------------------------------~~~~~~~  203 (251)
                      .++|+||+|+++|++++|..||...+...........                                    ..+.. .
T Consensus       177 ~~~DiwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  255 (308)
T cd06615         177 VQSDIWSLGLSLVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKL-P  255 (308)
T ss_pred             ccchHHHHHHHHHHHHhCCCCCCCcchhhHHHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCccC-c
Confidence            9999999999999999999998644332222111100                                    00000 1


Q ss_pred             CCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         204 PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       204 ~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      ...++.++.+++.+||..+|++|||++|+++||||++.+.+.
T Consensus       256 ~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~~  297 (308)
T cd06615         256 SGAFSDEFQDFVDKCLKKNPKERADLKELTKHPFIKRAELEE  297 (308)
T ss_pred             CcccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhhccccc
Confidence            123678899999999999999999999999999999865553

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=100.00  E-value=1.2e-38  Score=266.48  Aligned_cols=204  Identities=27%  Similarity=0.474  Sum_probs=168.8

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .+||||+.+++++...+..++||||+.+++|.+++. ....+++..+..++.|++.||.|||+.|++|||||        
T Consensus        54 ~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~-~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dik--------  124 (279)
T cd05633          54 GDCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHLS-QHGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLK--------  124 (279)
T ss_pred             CCCCcEeEEEEEEecCCeEEEEEecCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCC--------
Confidence            479999999999998899999999999999999887 45679999999999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc-cCCCCcch
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-EIGYDCVA  162 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~~~  162 (251)
                                               |+||+++.++.++++|||++......  ......++..|+|||.+. +..++.++
T Consensus       125 -------------------------p~Nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~  177 (279)
T cd05633         125 -------------------------PANILLDEHGHVRISDLGLACDFSKK--KPHASVGTHGYMAPEVLQKGTAYDSSA  177 (279)
T ss_pred             -------------------------HHHEEECCCCCEEEccCCcceecccc--CccCcCCCcCccCHHHhcCCCCCCchh
Confidence                                     88999998999999999998654332  122345788999999986 45678999


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCCCcchh--hhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcC
Q psy3253         163 DMWSLGITALEMAEGKPPYGDIHPMRA--IFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNH  235 (251)
Q Consensus       163 DvwslG~~l~~l~~g~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~h  235 (251)
                      |+||+||++|++++|..||........  .......  .....+..+++++.++|.+||+.||++|+     |++|+++|
T Consensus       178 Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         178 DWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLT--VNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             hhHHHHHHHHHHHhCCCCcCCCCCcCHHHHHHHhhc--CCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence            999999999999999999965432221  1111111  12233566899999999999999999999     69999999


Q ss_pred             hhhhhccCCC
Q psy3253         236 EFIQRHDTDP  245 (251)
Q Consensus       236 p~~~~~~~~~  245 (251)
                      |||+..+|..
T Consensus       256 ~~~~~~~~~~  265 (279)
T cd05633         256 VFFKGIDWQQ  265 (279)
T ss_pred             ccccCCCHhH
Confidence            9999977654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=100.00  E-value=6.6e-39  Score=267.41  Aligned_cols=208  Identities=58%  Similarity=1.047  Sum_probs=174.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...|+||||+.+++|.+++.  ...+++..+..++.|++.|+.|||++|++|+||+     
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~-----  128 (277)
T cd06642          56 LSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLK--PGPLEETYIATILREILKGLDYLHSERKIHRDIK-----  128 (277)
T ss_pred             HHcCCCCccHhhhcccccCCceEEEEEccCCCcHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCC-----
Confidence            357899999999999999999999999999999999885  4578999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++++|||++..............++..|+|||.+.+..++.
T Consensus       129 ----------------------------p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  180 (277)
T cd06642         129 ----------------------------AANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDF  180 (277)
T ss_pred             ----------------------------hheEEEeCCCCEEEccccccccccCcchhhhcccCcccccCHHHhCcCCCch
Confidence                                        8888888889999999999876543322333345678899999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++|+|||||++|++++|..||...........+.....+.  ....++.++.+++.+||+.+|++|||++|+++||||++
T Consensus       181 ~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~  258 (277)
T cd06642         181 KADIWSLGITAIELAKGEPPNSDLHPMRVLFLIPKNSPPT--LEGQYSKPFKEFVEACLNKDPRFRPTAKELLKHKFITR  258 (277)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCcccchhhHHhhhhcCCCCC--CCcccCHHHHHHHHHHccCCcccCcCHHHHHHhHHHHH
Confidence            9999999999999999999997655544443333332222  23456889999999999999999999999999999997


Q ss_pred             ccCCC
Q psy3253         241 HDTDP  245 (251)
Q Consensus       241 ~~~~~  245 (251)
                      ..+.+
T Consensus       259 ~~~~~  263 (277)
T cd06642         259 YTKKT  263 (277)
T ss_pred             HhhhH
Confidence            66543

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=100.00  E-value=1.6e-38  Score=266.48  Aligned_cols=207  Identities=40%  Similarity=0.808  Sum_probs=174.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++..++..++++||+.+++|.+++..  ..+++..+..++.|++.||.|||++|++||||+      
T Consensus        71 ~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~------  142 (285)
T cd06648          71 RDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIATVCLAVLKALSFLHAQGVIHRDIK------  142 (285)
T ss_pred             HHcCCCChheEEEEEEcCCeEEEEEeccCCCCHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC------
Confidence            467899999999999999999999999999999999874  678999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++++|||.+..............++..|+|||.+.+..++.+
T Consensus       143 ---------------------------p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  195 (285)
T cd06648         143 ---------------------------SDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTE  195 (285)
T ss_pred             ---------------------------hhhEEEcCCCcEEEcccccchhhccCCcccccccCCccccCHHHhcCCCCCCc
Confidence                                       88888888899999999988654433222333457888999999988889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +|+||+|+++|++++|..||...+.......+.....+....+..++..+.+++.+||+.+|++|||++++++||||+..
T Consensus       196 ~Dv~slGv~l~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~  275 (285)
T cd06648         196 VDIWSLGIMVIEMVDGEPPYFNEPPLQAMKRIRDNLPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLNHPFLAKA  275 (285)
T ss_pred             ccHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHcccChhhCcCHHHHccCcccccC
Confidence            99999999999999999999776655544444433333333344578999999999999999999999999999999876


Q ss_pred             cC
Q psy3253         242 DT  243 (251)
Q Consensus       242 ~~  243 (251)
                      ..
T Consensus       276 ~~  277 (285)
T cd06648         276 GP  277 (285)
T ss_pred             CC
Confidence            53

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=100.00  E-value=1.4e-38  Score=265.50  Aligned_cols=214  Identities=28%  Similarity=0.415  Sum_probs=174.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++......|+||||+++++|.+++.... ..+++..+..++.|++.||.|||+.|++||||+    
T Consensus        47 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~----  122 (277)
T cd05577          47 LEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLK----  122 (277)
T ss_pred             HHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC----
Confidence            457899999999999999999999999999999999987433 368999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||.+...... .......++..|+|||.+.+..++
T Consensus       123 -----------------------------p~Nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~  172 (277)
T cd05577         123 -----------------------------PENVLLDDHGNVRISDLGLAVELKGG-KKIKGRAGTPGYMAPEVLQGEVYD  172 (277)
T ss_pred             -----------------------------HHHEEECCCCCEEEccCcchhhhccC-CccccccCCCCcCCHHHhcCCCCC
Confidence                                         88999999999999999998654332 222334567789999999888899


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC-CCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEML  233 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl  233 (251)
                      .++|+||+|+++|++++|+.||...........+.. ........+..+++++.++|.+||+.||++||     ++++++
T Consensus       173 ~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll  252 (277)
T cd05577         173 FSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVR  252 (277)
T ss_pred             chhhhHHHHHHHHHHhhCCCCCCCCcccccHHHHHhccccccccCCccCCHHHHHHHHHHccCChhHccCCCcccHHHHH
Confidence            999999999999999999999965543111111111 11112223456799999999999999999999     888999


Q ss_pred             cChhhhhccCCCCCC
Q psy3253         234 NHEFIQRHDTDPSQN  248 (251)
Q Consensus       234 ~hp~~~~~~~~~~~~  248 (251)
                      +||||.+.+|...+.
T Consensus       253 ~h~~~~~~~~~~~~~  267 (277)
T cd05577         253 EHPLFKDLNWRRLEA  267 (277)
T ss_pred             hChhhhcCChhhhhc
Confidence            999999999966543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2e-38  Score=261.99  Aligned_cols=204  Identities=33%  Similarity=0.561  Sum_probs=171.5

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcc
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV   82 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~   82 (251)
                      +.+|||++++++++..+...|+|+||+.+++|.++++ ....+++..+..++.|++.||.|||+.|++||||+       
T Consensus        53 ~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~-------  124 (260)
T cd05611          53 QGESPYVAKLYYSFQSKDYLYLVMEYLNGGDCASLIK-TLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIK-------  124 (260)
T ss_pred             cCCCCCeeeeeeeEEcCCeEEEEEeccCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-------
Confidence            4689999999999999999999999999999999997 44678999999999999999999999999999988       


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcch
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA  162 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  162 (251)
                                                |+||+++.++.++|+|||++.....    .....++..|+|||.+.+..++.++
T Consensus       125 --------------------------p~nil~~~~~~~~l~dfg~~~~~~~----~~~~~~~~~y~~pe~~~~~~~~~~~  174 (260)
T cd05611         125 --------------------------PENLLIDQTGHLKLTDFGLSRNGLE----NKKFVGTPDYLAPETILGVGDDKMS  174 (260)
T ss_pred             --------------------------HHHeEECCCCcEEEeecccceeccc----cccCCCCcCccChhhhcCCCCcchh
Confidence                                      8899998899999999999865432    2234567889999999887789999


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccC---CHHHHhcChhh
Q psy3253         163 DMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERA---TASEMLNHEFI  238 (251)
Q Consensus       163 DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp---s~~evl~hp~~  238 (251)
                      |+||+|+++|++++|..||...+.......+.... .........+++++.+++.+||+.+|++||   +++|+++||||
T Consensus       175 Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~~~~~  254 (260)
T cd05611         175 DWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKSHPFF  254 (260)
T ss_pred             hhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccCCCCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHHcChHh
Confidence            99999999999999999997666554443332221 111122345789999999999999999999   55899999999


Q ss_pred             hhccCC
Q psy3253         239 QRHDTD  244 (251)
Q Consensus       239 ~~~~~~  244 (251)
                      ++.+|+
T Consensus       255 ~~~~~~  260 (260)
T cd05611         255 KSINWD  260 (260)
T ss_pred             hcCCCC
Confidence            998885

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=100.00  E-value=1.1e-38  Score=266.83  Aligned_cols=204  Identities=25%  Similarity=0.442  Sum_probs=162.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK--KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~--~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++.++...|+||||+. ++|.+++....  ..+++..++.++.|++.||.|||++|++|||||   
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~---  128 (285)
T cd07861          53 LKELQHPNIVCLQDVLMQESRLYLIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLK---  128 (285)
T ss_pred             HHhcCCCCEeeeEEEEeeCCeEEEEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCC---
Confidence            357899999999999999999999999996 58988886433  568999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IG  157 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~  157 (251)
                                                    |+||+++.++.++|+|||++..............+++.|+|||.+.+ ..
T Consensus       129 ------------------------------p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  178 (285)
T cd07861         129 ------------------------------PQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPR  178 (285)
T ss_pred             ------------------------------HHHEEEcCCCcEEECcccceeecCCCcccccCCcccccccChHHhcCCCC
Confidence                                          88999999999999999998654433222233456788999998865 45


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC------------------------C--CCCCCCCCCCCCHHH
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT------------------------K--PPPSFREPDVWTPEF  211 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~------------------------~--~~~~~~~~~~~~~~~  211 (251)
                      ++.++|+||+||++|++++|.+||.+............                        .  ..........+++++
T Consensus       179 ~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (285)
T cd07861         179 YSTPVDIWSIGTIFAEMATKKPLFHGDSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDG  258 (285)
T ss_pred             cCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCCCHHH
Confidence            78899999999999999999999975443221111000                        0  000001123478899


Q ss_pred             HHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         212 IDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       212 ~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .++|.+||..||++|||++++++||||
T Consensus       259 ~~li~~~l~~dP~~Rpt~~~ll~~~~~  285 (285)
T cd07861         259 LDLLEKMLIYDPAKRISAKKALNHPYF  285 (285)
T ss_pred             HHHHHHHhcCChhhCCCHHHHhcCCCC
Confidence            999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=100.00  E-value=8e-39  Score=268.37  Aligned_cols=208  Identities=25%  Similarity=0.402  Sum_probs=171.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++|+|++++++.+.++++.|+||||+.+++|.+++... ...+++..++.++.|++.||.|||+.|++|||||    
T Consensus        54 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dik----  129 (285)
T cd05630          54 LEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLK----  129 (285)
T ss_pred             HHhCCCCCeeeeeEEEecCCEEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCC----
Confidence            35789999999999999999999999999999999988633 3468999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||++....... ......++..|+|||.+.+..++
T Consensus       130 -----------------------------p~Nil~~~~~~~~l~Dfg~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~  179 (285)
T cd05630         130 -----------------------------PENILLDDHGHIRISDLGLAVHVPEGQ-TIKGRVGTVGYMAPEVVKNERYT  179 (285)
T ss_pred             -----------------------------HHHEEECCCCCEEEeeccceeecCCCc-cccCCCCCccccChHHHcCCCCC
Confidence                                         889999989999999999986543221 12234678899999999988899


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcch---hhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMR---AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASE  231 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~e  231 (251)
                      .++|+||+||++|+|++|..||.......   ..........  ...+..+++++.+++.+||+.||++|||     ++|
T Consensus       180 ~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~  257 (285)
T cd05630         180 FSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVQ--EEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGARE  257 (285)
T ss_pred             CccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhhhh--hhcCccCCHHHHHHHHHHhhcCHHHccCCCCCchHH
Confidence            99999999999999999999997543221   1111111111  1224567899999999999999999999     899


Q ss_pred             HhcChhhhhccCC
Q psy3253         232 MLNHEFIQRHDTD  244 (251)
Q Consensus       232 vl~hp~~~~~~~~  244 (251)
                      +++||||++.+|.
T Consensus       258 ~~~h~~~~~~~~~  270 (285)
T cd05630         258 VKEHPLFKQINFK  270 (285)
T ss_pred             HHcChhhhccCHH
Confidence            9999999987665

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=100.00  E-value=1.9e-38  Score=265.84  Aligned_cols=213  Identities=49%  Similarity=0.942  Sum_probs=178.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||++++++++......|+++||+++++|.+++......+++..+..++.|++.||.|||+.|++|+|++     
T Consensus        69 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~-----  143 (286)
T cd06614          69 MKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIK-----  143 (286)
T ss_pred             HHHCCCCCeeEEEEEEEECCEEEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC-----
Confidence            357899999999999999999999999999999999998544489999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||.+..............++..|+|||.+.+..++.
T Consensus       144 ----------------------------p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~  195 (286)
T cd06614         144 ----------------------------SDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGP  195 (286)
T ss_pred             ----------------------------hhhEEEcCCCCEEECccchhhhhccchhhhccccCCcccCCHhHhcCCCCCC
Confidence                                        8888998899999999998865443322223344677899999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++|+||+|+++|++++|..||...........+.............++..+.+++.+||+.+|.+|||+++++.|+||++
T Consensus       196 ~~Dv~slGvil~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~  275 (286)
T cd06614         196 KVDIWSLGIMCIEMAEGEPPYLREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHPFLKK  275 (286)
T ss_pred             ccccHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCcchhhCCHHHHHHHHHHhccChhhCcCHHHHhhChHhhc
Confidence            99999999999999999999977665544444433333333334457899999999999999999999999999999999


Q ss_pred             ccCCCC
Q psy3253         241 HDTDPS  246 (251)
Q Consensus       241 ~~~~~~  246 (251)
                      ..+..+
T Consensus       276 ~~~~~~  281 (286)
T cd06614         276 ACPKEE  281 (286)
T ss_pred             cCchHh
Confidence            666543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=100.00  E-value=2.7e-38  Score=263.78  Aligned_cols=206  Identities=58%  Similarity=1.045  Sum_probs=173.8

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...|+||||+.+++|.+++.  ...+++.++..++.|++.||.|||+.+++|+||+      
T Consensus        57 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~--~~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~------  128 (277)
T cd06640          57 SQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLR--AGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIK------  128 (277)
T ss_pred             HhCCCCCEeeEEEEEEECCEEEEEEecCCCCcHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCCccCcCCC------
Confidence            56899999999999999999999999999999999986  3578999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++++|||++..............++..|.|||.+.+..++.+
T Consensus       129 ---------------------------p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~  181 (277)
T cd06640         129 ---------------------------AANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSK  181 (277)
T ss_pred             ---------------------------hhhEEEcCCCCEEEcccccceeccCCccccccccCcccccCHhHhccCCCccH
Confidence                                       88888888899999999999765443222333456778999999988889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +|+|||||++|++++|.+||...........+.....+  ..+..++..+.+++.+||+.+|++||+++++++||||.+.
T Consensus       182 ~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  259 (277)
T cd06640         182 ADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPP--TLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKHKFIVKN  259 (277)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCcChHhHhhhhhcCCCC--CCchhhhHHHHHHHHHHcccCcccCcCHHHHHhChHhhhc
Confidence            99999999999999999999776655544433333222  2244568899999999999999999999999999999876


Q ss_pred             cCC
Q psy3253         242 DTD  244 (251)
Q Consensus       242 ~~~  244 (251)
                      ...
T Consensus       260 ~~~  262 (277)
T cd06640         260 AKK  262 (277)
T ss_pred             chh
Confidence            554

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=100.00  E-value=2.3e-38  Score=262.28  Aligned_cols=204  Identities=37%  Similarity=0.673  Sum_probs=169.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++......++++||+.+++|.+++. +...+++..+..++.|++.||.|||+.|++|+||+     
T Consensus        56 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----  129 (265)
T cd06631          56 LKSLKHVNIVQYLGTCLDDNTISIFMEFVPGGSISSILN-RFGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIK-----  129 (265)
T ss_pred             HHhcCCCCEeeEeeEeecCCeEEEEEecCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcC-----
Confidence            357899999999999999999999999999999999997 44678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc------cccccccccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT------MAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~------~~~~~~~~~~~~y~aPE~~~  154 (251)
                                                  |+||+++.++.++|+|||.+......      ........++..|+|||.+.
T Consensus       130 ----------------------------p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  181 (265)
T cd06631         130 ----------------------------GNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVIN  181 (265)
T ss_pred             ----------------------------HHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhc
Confidence                                        88888888899999999998654211      01112234677899999998


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +..++.++|+||+|+++|++++|..||...+.......+..........+..++.++.+++.+||..+|++||+++|+++
T Consensus       182 ~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         182 ESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLAAMFYIGAHRGLMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             CCCCcchhhHHHHHHHHHHHHhCCCccccCChHHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            88899999999999999999999999976554443333222211222235568999999999999999999999999999


Q ss_pred             Chhh
Q psy3253         235 HEFI  238 (251)
Q Consensus       235 hp~~  238 (251)
                      ||||
T Consensus       262 ~~~~  265 (265)
T cd06631         262 HDFL  265 (265)
T ss_pred             CCCC
Confidence            9997

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=100.00  E-value=2e-38  Score=266.94  Aligned_cols=208  Identities=42%  Similarity=0.838  Sum_probs=174.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++......|+|+||+++++|.+++.  ...+++.++..++.|++.||.|||++|++|+|+|     
T Consensus        70 l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~-----  142 (293)
T cd06647          70 MRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIK-----  142 (293)
T ss_pred             HhhcCCCCeeehhheeeeCCcEEEEEecCCCCcHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHhCCEeeccCC-----
Confidence            357899999999999999999999999999999999986  3468899999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++..............++..|+|||.+....++.
T Consensus       143 ----------------------------p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~  194 (293)
T cd06647         143 ----------------------------SDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGP  194 (293)
T ss_pred             ----------------------------HHHEEEcCCCCEEEccCcceecccccccccccccCChhhcCchhhccCCCCc
Confidence                                        8888888889999999998865543333333445778899999998888899


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++|+||+|+++|++++|..||...+.......+.....+....+..++..+.+++.+||..+|++||++++++.||||+.
T Consensus       195 ~~Dv~slG~ll~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h~~~~~  274 (293)
T cd06647         195 KVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHPFLKI  274 (293)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCChhhheeehhcCCCCCCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhc
Confidence            99999999999999999999976655444333333333334445567889999999999999999999999999999987


Q ss_pred             ccC
Q psy3253         241 HDT  243 (251)
Q Consensus       241 ~~~  243 (251)
                      ..-
T Consensus       275 ~~~  277 (293)
T cd06647         275 AKP  277 (293)
T ss_pred             Ccc
Confidence            663

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=100.00  E-value=2.3e-38  Score=263.11  Aligned_cols=202  Identities=50%  Similarity=0.949  Sum_probs=165.0

Q ss_pred             CC-CCCccceeeeeEeeC------CeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           3 QC-DSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~------~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      ++ +||||+++++++...      ...|++|||+.+++|.+++... ...+++..+..++.|++.||.|||++|++|+|+
T Consensus        58 ~~~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl  137 (272)
T cd06637          58 KYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDI  137 (272)
T ss_pred             HhcCCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCC
Confidence            44 799999999998753      4689999999999999998753 356899999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                      |                                 |+||+++.++.++|+|||++..............++..|+|||++.
T Consensus       138 ~---------------------------------~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~  184 (272)
T cd06637         138 K---------------------------------GQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIA  184 (272)
T ss_pred             C---------------------------------HHHEEECCCCCEEEccCCCceecccccccCCcccccccccCHhHhc
Confidence            8                                 8899999999999999999876543323334456788899999985


Q ss_pred             -----cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         155 -----EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       155 -----~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                           ...++.++|+||+||++|+|++|..||................... .....++.++.+++.+||..+|++|||+
T Consensus       185 ~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rpt~  263 (272)
T cd06637         185 CDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPR-LKSKKWSKKFQSFIESCLVKNHSQRPTT  263 (272)
T ss_pred             cccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHHHHHhcCCCCC-CCCCCcCHHHHHHHHHHcCCChhhCCCH
Confidence                 3457889999999999999999999997655444443332222111 2234578999999999999999999999


Q ss_pred             HHHhcChhh
Q psy3253         230 SEMLNHEFI  238 (251)
Q Consensus       230 ~evl~hp~~  238 (251)
                      +|++.||||
T Consensus       264 ~~il~~~~~  272 (272)
T cd06637         264 EQLMKHPFI  272 (272)
T ss_pred             HHHhhCCCC
Confidence            999999997

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=100.00  E-value=3e-38  Score=261.90  Aligned_cols=203  Identities=49%  Similarity=0.935  Sum_probs=165.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...++||||+.+++|.+++. ....+++..+..++.|++.||.|||+.|++|||+|     
T Consensus        60 l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----  133 (267)
T cd06646          60 VKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYH-VTGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIK-----  133 (267)
T ss_pred             HHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----
Confidence            357899999999999999999999999999999999986 45678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc---cCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---EIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~  157 (251)
                                                  |+||+++.++.++|+|||++..............++..|+|||.+.   ...
T Consensus       134 ----------------------------p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~  185 (267)
T cd06646         134 ----------------------------GANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGG  185 (267)
T ss_pred             ----------------------------HHHEEECCCCCEEECcCccceeecccccccCccccCccccCHhHcccccCCC
Confidence                                        8888888889999999999976543322333445778899999884   345


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC--CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++.++|+||+||++|+|++|..||...........+...  ..+.......++..+.+++.+||..+|++|||++++++|
T Consensus       186 ~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  265 (267)
T cd06646         186 YNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTH  265 (267)
T ss_pred             CcchhhHHHHHHHHHHHHhCCCCccccchhhhheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCcCHHHHhcC
Confidence            778999999999999999999999655433322222111  111222234578999999999999999999999999999


Q ss_pred             hh
Q psy3253         236 EF  237 (251)
Q Consensus       236 p~  237 (251)
                      +|
T Consensus       266 l~  267 (267)
T cd06646         266 LF  267 (267)
T ss_pred             CC
Confidence            87

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=1.2e-38  Score=267.00  Aligned_cols=202  Identities=27%  Similarity=0.391  Sum_probs=160.0

Q ss_pred             CCCCCCccceeeeeEee-----CCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           2 QQCDSPYVVKYYGSYFK-----NTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~-----~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      ++++||||+++++++..     ....+++|||+. ++|.+++.... ..+++..++.++.|++.||.|||++|++|||||
T Consensus        57 ~~~~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dik  135 (288)
T cd07863          57 EAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLK  135 (288)
T ss_pred             hhcCCCCeeeeeeeeccccCCCCceEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            35689999999998864     345899999996 48988886433 458999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.++|+|||++...... .......++..|+|||++.+
T Consensus       136 ---------------------------------p~Nili~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~  181 (288)
T cd07863         136 ---------------------------------PENILVTSGGQVKLADFGLARIYSCQ-MALTPVVVTLWYRAPEVLLQ  181 (288)
T ss_pred             ---------------------------------HHHEEECCCCCEEECccCccccccCc-ccCCCccccccccCchHhhC
Confidence                                             88999999999999999998755432 12223456888999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---C-----CC----------------CCCCCCCCCCHHH
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---K-----PP----------------PSFREPDVWTPEF  211 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~-----~~----------------~~~~~~~~~~~~~  211 (251)
                      ..++.++|+||+||++|+|++|.+||.+.........+..   .     .+                ........++..+
T Consensus       182 ~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (288)
T cd07863         182 STYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESG  261 (288)
T ss_pred             CCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHHH
Confidence            8899999999999999999999999965443322111100   0     00                0000123467889


Q ss_pred             HHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         212 IDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       212 ~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .+++.+||+.||++|||++|+++||||
T Consensus       262 ~~li~~~L~~dP~~R~t~~~~l~hp~f  288 (288)
T cd07863         262 AQLLLEMLTFNPHKRISAFRALQHPFF  288 (288)
T ss_pred             HHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=100.00  E-value=2.5e-38  Score=260.71  Aligned_cols=202  Identities=29%  Similarity=0.552  Sum_probs=168.4

Q ss_pred             CCCCCCccceeeeeEee-CCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFK-NTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~-~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      ++++|||++++++.+.. +...|++|||+.+++|.+++... ...+++.+++.++.+++.||.+||+.|++|||||    
T Consensus        54 ~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~----  129 (257)
T cd08223          54 SQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLK----  129 (257)
T ss_pred             HhCCCCCeeeeeeeecCCCCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC----
Confidence            57899999999998864 44689999999999999998753 3468999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||++..............+++.|+|||.+.+..++
T Consensus       130 -----------------------------p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  180 (257)
T cd08223         130 -----------------------------TQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYN  180 (257)
T ss_pred             -----------------------------chhEEEecCCcEEEecccceEEecccCCccccccCCcCccChhHhcCCCCC
Confidence                                         888888888999999999987654333333344578889999999988899


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .++|+||+|++++++++|..||...+.......+.....+.  .+..+++++.+++.+||+.||++|||+.|+++||||
T Consensus       181 ~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  257 (257)
T cd08223         181 YKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPP--MPKDYSPELGELIATMLSKRPEKRPSVKSILRQPYI  257 (257)
T ss_pred             chhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCC--CccccCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            99999999999999999999997665544433333322212  245678999999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-38  Score=263.67  Aligned_cols=203  Identities=53%  Similarity=1.005  Sum_probs=168.0

Q ss_pred             CC-CCCccceeeeeEeeCC------eEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy3253           3 QC-DSPYVVKYYGSYFKNT------DLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLHLRRKIHR   72 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~~------~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~   72 (251)
                      ++ +||||+++++++....      ..++||||+.+++|.++++..   +..+++..+..++.|++.||.|||+.|++|+
T Consensus        58 ~~~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~  137 (275)
T cd06608          58 KYSNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHR  137 (275)
T ss_pred             HhcCCCChheEEEEEEecCCCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence            45 7999999999997544      489999999999999998643   4678999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEV  152 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  152 (251)
                      ||+                                 |+||+++.++.++|+|||.+..............++..|+|||.
T Consensus       138 ~l~---------------------------------p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~  184 (275)
T cd06608         138 DIK---------------------------------GQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEV  184 (275)
T ss_pred             CCC---------------------------------HHHEEEccCCeEEECCCccceecccchhhhcCccccccccCHhH
Confidence            988                                 88999998999999999998755443333344567888999998


Q ss_pred             ccc-----CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC
Q psy3253         153 IQE-----IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA  227 (251)
Q Consensus       153 ~~~-----~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  227 (251)
                      +..     ..++.++||||+|+++|++++|..||...........+..........+..++.++.+++.+||..||++||
T Consensus       185 ~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp  264 (275)
T cd06608         185 IACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMRALFKIPRNPPPTLKSPENWSKKFNDFISECLIKNYEQRP  264 (275)
T ss_pred             hcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHHHHHHhhccCCCCCCchhhcCHHHHHHHHHHhhcChhhCc
Confidence            753     346778999999999999999999997665555444444444434444455788999999999999999999


Q ss_pred             CHHHHhcChhh
Q psy3253         228 TASEMLNHEFI  238 (251)
Q Consensus       228 s~~evl~hp~~  238 (251)
                      |++|+++|||+
T Consensus       265 t~~~ll~~~~~  275 (275)
T cd06608         265 FMEELLEHPFI  275 (275)
T ss_pred             CHHHHhcCCCC
Confidence            99999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=100.00  E-value=2.6e-38  Score=260.56  Aligned_cols=203  Identities=30%  Similarity=0.567  Sum_probs=172.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      +++++||||+++++++....+.++|+||+.+++|.+++.... ..+++.+++.++.|++.||.|||++|++|+||+    
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~----  128 (256)
T cd08218          53 LSNMKHPNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIK----  128 (256)
T ss_pred             HHhCCCCCeeeeEeeecCCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC----
Confidence            467899999999999999999999999999999999986433 468999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++++|||.+..............++..|+|||.+.+..++
T Consensus       129 -----------------------------~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~  179 (256)
T cd08218         129 -----------------------------SQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRPYN  179 (256)
T ss_pred             -----------------------------HHHEEEcCCCCEEEeeccceeecCcchhhhhhccCCccccCHHHhCCCCCC
Confidence                                         888888888899999999997654433223334567889999999888889


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .++|+||+||+++++++|..||...+.......+..+..+.  .+..++.++.+++.+||+.+|++||+++|+++||||
T Consensus       180 ~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~~~~~  256 (256)
T cd08218         180 NKSDIWALGCVLYEMCTLKHAFEAGNMKNLVLKIIRGSYPP--VSSHYSYDLRNLVSQLFKRNPRDRPSVNSILEKNFI  256 (256)
T ss_pred             CccchhHHHHHHHHHHcCCCCccCCCHHHHHHHHhcCCCCC--CcccCCHHHHHHHHHHhhCChhhCcCHHHHhhCcCC
Confidence            99999999999999999999997666555544443333222  355678999999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=100.00  E-value=3.7e-38  Score=261.61  Aligned_cols=204  Identities=35%  Similarity=0.547  Sum_probs=162.8

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL--SEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l--~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      ++++||||+++++++..+...++++||+.+++|.+++......+  ++..+..++.|++.||.|||++|++|||||    
T Consensus        60 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~----  135 (268)
T cd06624          60 SYLKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIK----  135 (268)
T ss_pred             HhcCCCCeeeeeeeeccCCEEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCC----
Confidence            57899999999999999999999999999999999997554556  888999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCC-CCCeEecccccccccCcccccccccccccccccccccccCC-
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-  157 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-  157 (251)
                                                   |+||+++. .+.++|+|||.+..............++..|+|||.+.+.. 
T Consensus       136 -----------------------------p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~  186 (268)
T cd06624         136 -----------------------------GDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPR  186 (268)
T ss_pred             -----------------------------HHHEEEcCCCCeEEEecchhheecccCCCccccCCCCccccChhhhccccc
Confidence                                         77777765 56899999999865433222222334678899999986543 


Q ss_pred             -CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         158 -YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       158 -~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                       ++.++|+||+|+++|++++|..||......................+..+++++.+++.+||+.+|++|||++|++.||
T Consensus       187 ~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~  266 (268)
T cd06624         187 GYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMFKIHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQDP  266 (268)
T ss_pred             cCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhhccCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHhCC
Confidence             7889999999999999999999996543322211111111111223556789999999999999999999999999999


Q ss_pred             hh
Q psy3253         237 FI  238 (251)
Q Consensus       237 ~~  238 (251)
                      ||
T Consensus       267 ~~  268 (268)
T cd06624         267 FL  268 (268)
T ss_pred             CC
Confidence            97

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=100.00  E-value=2.4e-38  Score=266.54  Aligned_cols=214  Identities=25%  Similarity=0.423  Sum_probs=170.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....++||||+ +++|.+++......+++..+..++.||+.||.|||++|++|+|||     
T Consensus        56 l~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~-----  129 (298)
T cd07841          56 LQELKHPNIIGLLDVFGHKSNINLVFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLK-----  129 (298)
T ss_pred             HhhcCCCCChhhhheeecCCEEEEEEccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCC-----
Confidence            35789999999999999999999999999 889999997443479999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.++|+|||++..............++..|+|||.+.+ ..++
T Consensus       130 ----------------------------p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  181 (298)
T cd07841         130 ----------------------------PNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYG  181 (298)
T ss_pred             ----------------------------hhhEEEcCCCCEEEccceeeeeccCCCccccccccceeeeCHHHHhCCCCCC
Confidence                                        88889988999999999999766543233333445778999998854 4578


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC---C----------------------CCCCCCCCCCCHHHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK---P----------------------PPSFREPDVWTPEFIDF  214 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~---~----------------------~~~~~~~~~~~~~~~~l  214 (251)
                      .++|+||+||++|++++|.++|.+.+.......+...   .                      ..........+..+.++
T Consensus       182 ~~~Dv~slG~il~e~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  261 (298)
T cd07841         182 VGVDMWSVGCIFAELLLRVPFLPGDSDIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDL  261 (298)
T ss_pred             cHHHHHHHHHHHHHHHcCCccccCCccHHHHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHHHHH
Confidence            8999999999999999998888655443222111000   0                      00000123346889999


Q ss_pred             HHHhhhcCcCccCCHHHHhcChhhhhccCCCCCC
Q psy3253         215 VSRCLVKNPEERATASEMLNHEFIQRHDTDPSQN  248 (251)
Q Consensus       215 i~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~~~  248 (251)
                      |.+||+++|++|||++|++.||||++...+.+++
T Consensus       262 i~~~l~~~P~~R~s~~e~l~~~~~~~~~~~~~~~  295 (298)
T cd07841         262 LQRLLTLNPNKRITARQALEHPYFSNDPAPTPPS  295 (298)
T ss_pred             HHHHhcCCcccCcCHHHHhhCccccCCCCCCCCC
Confidence            9999999999999999999999999877766543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=100.00  E-value=3.9e-38  Score=266.48  Aligned_cols=210  Identities=30%  Similarity=0.466  Sum_probs=171.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||+++++.+.++.+.++||||++|++|.+++. ....+++..+..++.|++.||.|||+.|++|||||      
T Consensus        56 ~~~~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~------  128 (305)
T cd05609          56 TFAENPFVVSMFCSFETKRHLCMVMEYVEGGDCATLLK-NIGALPVDMARMYFAETVLALEYLHNYGIVHRDLK------  128 (305)
T ss_pred             HhCCCCCeeeeEEEEecCCEEEEEEecCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCc------
Confidence            56899999999999999999999999999999999997 44679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---------------cccccccccc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---------------KRNTVIGTPF  146 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---------------~~~~~~~~~~  146 (251)
                                                 |+||+++.++.++++|||+++.......               ......++..
T Consensus       129 ---------------------------p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (305)
T cd05609         129 ---------------------------PDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPE  181 (305)
T ss_pred             ---------------------------hHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCcc
Confidence                                       8888998899999999998863211000               0111245678


Q ss_pred             cccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         147 WMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       147 y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      |+|||.+.+..++.++|+|||||++|++++|..||.+.+.....................++.++.++|.+||+.+|++|
T Consensus       182 y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R  261 (305)
T cd05609         182 YIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEGDEALPADAQDLISRLLRQNPLER  261 (305)
T ss_pred             ccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHhccChhhc
Confidence            99999998888999999999999999999999999776555444433322211112233578999999999999999999


Q ss_pred             CC---HHHHhcChhhhhccCCC
Q psy3253         227 AT---ASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       227 ps---~~evl~hp~~~~~~~~~  245 (251)
                      |+   +.|+++||||+..+|+.
T Consensus       262 ~~~~~~~~ll~~~~~~~~~~~~  283 (305)
T cd05609         262 LGTGGAFEVKQHRFFLGLDWNG  283 (305)
T ss_pred             cCccCHHHHHhCccccCCCHHH
Confidence            97   79999999998877754

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=100.00  E-value=3.2e-38  Score=264.19  Aligned_cols=203  Identities=53%  Similarity=1.007  Sum_probs=165.8

Q ss_pred             CC-CCCccceeeeeEe-----eCCeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccC
Q psy3253           3 QC-DSPYVVKYYGSYF-----KNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRD   73 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~-----~~~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~d   73 (251)
                      ++ +||||+++++++.     ++...++||||+++++|.+++..   ....+++..+..++.|++.||.|||+.+++|||
T Consensus        70 ~l~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~d  149 (286)
T cd06638          70 ALSDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRD  149 (286)
T ss_pred             HHhcCCCeeeeeeeeeecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccC
Confidence            45 7999999999884     34578999999999999998752   235688999999999999999999999999999


Q ss_pred             CCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccc
Q psy3253          74 IKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        74 ik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  153 (251)
                      ||                                 |+||+++.++.++|+|||.+..............++..|+|||.+
T Consensus       150 lk---------------------------------p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  196 (286)
T cd06638         150 VK---------------------------------GNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVI  196 (286)
T ss_pred             CC---------------------------------HHhEEECCCCCEEEccCCceeecccCCCccccccCCCcccChhhh
Confidence            88                                 889999889999999999987654433333445678899999988


Q ss_pred             cc-----CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC
Q psy3253         154 QE-----IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT  228 (251)
Q Consensus       154 ~~-----~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  228 (251)
                      ..     ..++.++|+||+||++|++++|..||......................+..++..+.+++.+||+.||++|||
T Consensus       197 ~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  276 (286)
T cd06638         197 ACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMRALFKIPRNPPPTLHQPELWSNEFNDFIRKCLTKDYEKRPT  276 (286)
T ss_pred             chhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhHHHhhccccCCCcccCCCCcCHHHHHHHHHHccCCcccCCC
Confidence            53     4478899999999999999999999976655444433333332333334556889999999999999999999


Q ss_pred             HHHHhcChhh
Q psy3253         229 ASEMLNHEFI  238 (251)
Q Consensus       229 ~~evl~hp~~  238 (251)
                      ++|+++|+||
T Consensus       277 ~~ell~~~~~  286 (286)
T cd06638         277 VSDLLQHVFI  286 (286)
T ss_pred             HHHHhhcccC
Confidence            9999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=100.00  E-value=4.2e-38  Score=263.03  Aligned_cols=209  Identities=26%  Similarity=0.445  Sum_probs=171.5

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcc
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV   82 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~   82 (251)
                      ..+||||+++++++......++||||+.|++|.+++. ....+++..++.++.|++.||.|||+.+++|||||       
T Consensus        53 ~~~~~~i~~~~~~~~~~~~~~~v~e~~~g~~L~~~l~-~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~-------  124 (278)
T cd05606          53 TGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS-QHGVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLK-------  124 (278)
T ss_pred             hCCCCcEeeeeeeeecCCEEEEEEecCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCC-------
Confidence            3579999999999999999999999999999999886 45679999999999999999999999999999988       


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCCcc
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDCV  161 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~  161 (251)
                                                |+||+++.++.++|+|||++......  ......++..|+|||.+.+ ..++.+
T Consensus       125 --------------------------p~nili~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~  176 (278)
T cd05606         125 --------------------------PANILLDEHGHVRISDLGLACDFSKK--KPHASVGTHGYMAPEVLQKGVAYDSS  176 (278)
T ss_pred             --------------------------HHHEEECCCCCEEEccCcCccccCcc--CCcCcCCCcCCcCcHHhcCCCCCCcc
Confidence                                      88999988999999999998654332  1223457889999999975 368899


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcCh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNHE  236 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~hp  236 (251)
                      +|+||+|+++|++++|..||......................+..++.++.+++.+||..+|++||     +++|+++||
T Consensus       177 ~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~~  256 (278)
T cd05606         177 ADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHP  256 (278)
T ss_pred             cchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhhccCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhCc
Confidence            999999999999999999997653221111111111112233556799999999999999999999     999999999


Q ss_pred             hhhhccCCCCC
Q psy3253         237 FIQRHDTDPSQ  247 (251)
Q Consensus       237 ~~~~~~~~~~~  247 (251)
                      ||+..+|....
T Consensus       257 ~~~~~~~~~~~  267 (278)
T cd05606         257 FFRSLDWQMVF  267 (278)
T ss_pred             cccCCCchHhh
Confidence            99999887643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=1.2e-38  Score=272.82  Aligned_cols=211  Identities=23%  Similarity=0.404  Sum_probs=172.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||+++++++.+++..|+||||+.||+|.+++......+++..++.++.|++.||+|||++|++|||||      
T Consensus        56 ~~~~~~~i~~l~~~~~~~~~~~lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlk------  129 (331)
T cd05624          56 VNGDCQWITTLHYAFQDENYLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIK------  129 (331)
T ss_pred             HhCCCCCEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCc------
Confidence            45789999999999999999999999999999999998656789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-ccccccccccccccccccc-----
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQE-----  155 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~-----  155 (251)
                                                 |+||+++.++.++|+|||++........ ......|++.|+|||++.+     
T Consensus       130 ---------------------------p~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  182 (331)
T cd05624         130 ---------------------------PDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGM  182 (331)
T ss_pred             ---------------------------hHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhccccCC
Confidence                                       8889998899999999999876543222 1223468999999999865     


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCC-CCCCCCCHHHHHHHHHhhhcCcCc--cCCHHH
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSF-REPDVWTPEFIDFVSRCLVKNPEE--RATASE  231 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~li~~~l~~~p~~--Rps~~e  231 (251)
                      ..++.++|+||+||++|+|++|+.||...+.......+.... ...+ .....+++++.+++.+||...+++  |+++++
T Consensus       183 ~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~  262 (331)
T cd05624         183 GKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFPSHITDVSEEAKDLIQRLICSRERRLGQNGIED  262 (331)
T ss_pred             CCCCCcccEEeeehhhhhhhhCCCCccCCCHHHHHHHHHcCCCcccCCCccccCCHHHHHHHHHHccCchhhcCCCCHHH
Confidence            457889999999999999999999997766554443333221 1111 112346899999999999876654  469999


Q ss_pred             HhcChhhhhccCCC
Q psy3253         232 MLNHEFIQRHDTDP  245 (251)
Q Consensus       232 vl~hp~~~~~~~~~  245 (251)
                      +++||||+..+|+.
T Consensus       263 ~~~h~~f~~~~~~~  276 (331)
T cd05624         263 FKKHAFFEGIDWEN  276 (331)
T ss_pred             HhcCCCcCCCCHHH
Confidence            99999999877654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.2e-38  Score=267.43  Aligned_cols=211  Identities=31%  Similarity=0.500  Sum_probs=174.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |+.++||||+++++.+.+....|+||||+.+++|.+++... ...+++..+..++.|++.||.|||+.|++|+|||    
T Consensus        55 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk----  130 (316)
T cd05574          55 LATLDHPFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLK----  130 (316)
T ss_pred             HHhCCCCCchhheeeeecCCEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCC----
Confidence            35688999999999999999999999999999999998743 3578999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-----------------------
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-----------------------  136 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-----------------------  136 (251)
                                                   |+||+++.++.++|+|||++........                       
T Consensus       131 -----------------------------p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (316)
T cd05574         131 -----------------------------PENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETF  181 (316)
T ss_pred             -----------------------------hHHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccchhhh
Confidence                                         8888888889999999999865432110                       


Q ss_pred             ------cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHH
Q psy3253         137 ------KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPE  210 (251)
Q Consensus       137 ------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (251)
                            ......|+..|+|||.+.+..++.++|+||||+++|++++|..||.+.+.......+.... .........+..
T Consensus       182 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  260 (316)
T cd05574         182 SEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDETFSNILKKE-VTFPGSPPVSSS  260 (316)
T ss_pred             cccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHhcCC-ccCCCccccCHH
Confidence                  1112356778999999988889999999999999999999999997766554444333222 122223337899


Q ss_pred             HHHHHHHhhhcCcCccCC----HHHHhcChhhhhccCCC
Q psy3253         211 FIDFVSRCLVKNPEERAT----ASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       211 ~~~li~~~l~~~p~~Rps----~~evl~hp~~~~~~~~~  245 (251)
                      +.+++.+||..||++|||    ++|+++||||+..+|..
T Consensus       261 ~~~li~~~l~~~p~~R~s~~~~~~~ll~~~~~~~~~~~~  299 (316)
T cd05574         261 ARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGVNWAL  299 (316)
T ss_pred             HHHHHHHHccCCHhHCCCchhhHHHHHcCchhhcCChhh
Confidence            999999999999999999    99999999999987754

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=100.00  E-value=1.7e-38  Score=265.62  Aligned_cols=204  Identities=26%  Similarity=0.443  Sum_probs=161.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....++++||++ ++|.+++......+++..++.++.||+.||.|||++|++|||||     
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~-----  126 (284)
T cd07839          53 LKELKHKNIVRLYDVLHSDKKLTLVFEYCD-QDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLK-----  126 (284)
T ss_pred             HHhcCCCCeeeHHHHhccCCceEEEEecCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC-----
Confidence            356899999999999999999999999996 58888886556789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccC-CCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~  159 (251)
                                                  |+||+++.++.++|+|||++..............++..|+|||.+.+. .++
T Consensus       127 ----------------------------~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  178 (284)
T cd07839         127 ----------------------------PQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYS  178 (284)
T ss_pred             ----------------------------HHHEEEcCCCcEEECccchhhccCCCCCCcCCCccccCCcChHHHhCCcccC
Confidence                                        888888889999999999997654332223334567889999998664 468


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCC-CCcchhhhhc------------------CC-CCCCCC-------CCCCCCCHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGD-IHPMRAIFMI------------------PT-KPPPSF-------REPDVWTPEFI  212 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~-~~~~~~~~~~------------------~~-~~~~~~-------~~~~~~~~~~~  212 (251)
                      .++|+||+||++|+|++|..|+.. .+.......+                  .. ......       .....+++++.
T Consensus       179 ~~~DiwslG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (284)
T cd07839         179 TSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGR  258 (284)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHH
Confidence            899999999999999998887633 2211111100                  00 000000       01234688999


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      ++|.+||+.||++|||++|+++||||
T Consensus       259 ~li~~~l~~~P~~R~t~~~il~h~~f  284 (284)
T cd07839         259 DLLQNLLVCNPVQRISAEEALQHPYF  284 (284)
T ss_pred             HHHHHHhcCChhhcCCHHHHhcCCCC
Confidence            99999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=100.00  E-value=7.1e-38  Score=257.97  Aligned_cols=203  Identities=29%  Similarity=0.562  Sum_probs=173.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.+....+++|||+.+++|.+++... ...+++..+..++.|++.||.|||+.|++|+||+    
T Consensus        53 l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~----  128 (256)
T cd08221          53 LSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIK----  128 (256)
T ss_pred             HHhCCCCCeeEEEeEEecCCeEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC----
Confidence            45789999999999999999999999999999999999744 4568999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.+||+|||.+..............+++.|.|||.+.+..++
T Consensus       129 -----------------------------p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~  179 (256)
T cd08221         129 -----------------------------TLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYN  179 (256)
T ss_pred             -----------------------------hHhEEEeCCCCEEECcCcceEEcccccccccccCCCccccCHhhcCCCCCC
Confidence                                         888888889999999999997654433233445678899999999888889


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .++|+||+|+++|+|++|..||...+.......+.......  .+..++.++.+++.+||..+|++||+++|+++|||+
T Consensus       180 ~~~Dv~slG~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~~l  256 (256)
T cd08221         180 FKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTP--VVSVYSSELISLVHSLLQQDPEKRPTADEVLDQPLL  256 (256)
T ss_pred             CcchhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCC--CccccCHHHHHHHHHHcccCcccCCCHHHHhhCcCC
Confidence            99999999999999999999997766555554444332222  235678999999999999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=100.00  E-value=4.7e-38  Score=262.72  Aligned_cols=204  Identities=34%  Similarity=0.696  Sum_probs=166.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++.+......++||||+++++|..+     ..+++..+..++.|++.||.|||+.|++|+|||     
T Consensus        53 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----  122 (279)
T cd06619          53 LYKCDSPYIIGFYGAFFVENRISICTEFMDGGSLDVY-----RKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVK-----  122 (279)
T ss_pred             HHhCCCCCeeeEEEEEEECCEEEEEEecCCCCChHHh-----hcCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCC-----
Confidence            3578999999999999999999999999999999654     357888999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++......  ......++..|+|||.+.+..++.
T Consensus       123 ----------------------------p~Nill~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~  172 (279)
T cd06619         123 ----------------------------PSNMLVNTRGQVKLCDFGVSTQLVNS--IAKTYVGTNAYMAPERISGEQYGI  172 (279)
T ss_pred             ----------------------------HHHEEECCCCCEEEeeCCcceecccc--cccCCCCChhhcCceeecCCCCCC
Confidence                                        88888888999999999999754332  223346788999999999888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcc-------hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPM-------RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      ++|+||+||++|++++|..||......       .....+........ .....++++.+++.+||..+|++||+++|++
T Consensus       173 ~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil  251 (279)
T cd06619         173 HSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVL-PVGQFSEKFVHFITQCMRKQPKERPAPENLM  251 (279)
T ss_pred             cchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCC-CCCcCCHHHHHHHHHHhhCChhhCCCHHHHh
Confidence            999999999999999999999543221       11111111111111 2344688999999999999999999999999


Q ss_pred             cChhhhhccCCC
Q psy3253         234 NHEFIQRHDTDP  245 (251)
Q Consensus       234 ~hp~~~~~~~~~  245 (251)
                      +||||+..+..+
T Consensus       252 ~~~~~~~~~~~~  263 (279)
T cd06619         252 DHPFIVQYNDGN  263 (279)
T ss_pred             cCcccccccCcc
Confidence            999998775543

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=100.00  E-value=5.8e-38  Score=264.11  Aligned_cols=208  Identities=38%  Similarity=0.777  Sum_probs=175.1

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||+++++.+...++.+++|||+++++|.+++.  ...+++..+..++.|++.||+|||+.|++||||+      
T Consensus        72 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~------  143 (292)
T cd06657          72 RDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVT--HTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIK------  143 (292)
T ss_pred             HhcCCcchhheeeEEEeCCEEEEEEecCCCCcHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC------
Confidence            46899999999999999999999999999999999875  4568999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||.+..............++..|+|||.+.+..++.+
T Consensus       144 ---------------------------p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~  196 (292)
T cd06657         144 ---------------------------SDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPE  196 (292)
T ss_pred             ---------------------------HHHEEECCCCCEEEcccccceecccccccccccccCccccCHHHhcCCCCCch
Confidence                                       88999999999999999998655433222333457888999999988888999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +|+||+|+++|++++|..||...........+....+........+++.+.+++.+||+.+|.+||+++++++||||.+.
T Consensus       197 ~Dv~slGvil~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~~~~~~~~  276 (292)
T cd06657         197 VDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPKLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKA  276 (292)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhhCCcccCCcccCCHHHHHHHHHHHhCCcccCcCHHHHhcChHHhcc
Confidence            99999999999999999999766554444333333333333445678999999999999999999999999999999887


Q ss_pred             cCC
Q psy3253         242 DTD  244 (251)
Q Consensus       242 ~~~  244 (251)
                      .-+
T Consensus       277 ~~~  279 (292)
T cd06657         277 GPP  279 (292)
T ss_pred             CCC
Confidence            643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=100.00  E-value=5.1e-38  Score=259.88  Aligned_cols=205  Identities=49%  Similarity=0.897  Sum_probs=170.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK--KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~--~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |+.++||||+++++.+..+...+++||++.+++|.++++...  ..+++..+..++.|++.||.+||+.|++|||||   
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~---  129 (267)
T cd06610          53 MSQCNHPNVVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIK---  129 (267)
T ss_pred             HHhcCCCCEEEEEEEEeeCCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC---
Confidence            356899999999999999999999999999999999997432  468999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc----ccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK----RNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~----~~~~~~~~~y~aPE~~~  154 (251)
                                                    |+||+++.++.++|+|||.+.........    .....++..|+|||.+.
T Consensus       130 ------------------------------p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~  179 (267)
T cd06610         130 ------------------------------AGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVME  179 (267)
T ss_pred             ------------------------------HHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHHc
Confidence                                          88999998999999999998765433221    12335678899999987


Q ss_pred             cC-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCC---CCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         155 EI-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREP---DVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       155 ~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      .. .++.++|+||+|+++|+|++|+.||................+......   ..+++++.+++.+||..||++|||++
T Consensus       180 ~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~  259 (267)
T cd06610         180 QVHGYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYKKYSKSFRKMISLCLQKDPSKRPTAE  259 (267)
T ss_pred             cccCcCcccchHhHhHHHHHHHhCCCCccccChhhhHHHHhcCCCCCcCCccccccccHHHHHHHHHHcCCChhhCcCHH
Confidence            76 788999999999999999999999977655544443333333222222   35789999999999999999999999


Q ss_pred             HHhcChhh
Q psy3253         231 EMLNHEFI  238 (251)
Q Consensus       231 evl~hp~~  238 (251)
                      |+++||||
T Consensus       260 ~ll~~p~~  267 (267)
T cd06610         260 ELLKHKFF  267 (267)
T ss_pred             HHhhCCCC
Confidence            99999997

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=100.00  E-value=3.2e-38  Score=263.89  Aligned_cols=204  Identities=26%  Similarity=0.531  Sum_probs=164.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...++||||+++++|..++. ....+++..++.++.|++.||.|||+.|++|||||     
T Consensus        54 l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~-~~~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~-----  127 (286)
T cd07847          54 LKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEK-NPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVK-----  127 (286)
T ss_pred             HHhCCCCCEeeeeeEEeeCCEEEEEEeccCccHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC-----
Confidence            357899999999999999999999999999988887765 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.++|+|||++..............++..|+|||.+.+ ..++
T Consensus       128 ----------------------------p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  179 (286)
T cd07847         128 ----------------------------PENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYG  179 (286)
T ss_pred             ----------------------------hhhEEEcCCCcEEECccccceecCCCcccccCcccccccCCHHHHhCCCCcC
Confidence                                        88889988999999999999766543322333456778999999865 5578


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC-----------------------CCCCCC-----CCCCCCCHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT-----------------------KPPPSF-----REPDVWTPEF  211 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~-----------------------~~~~~~-----~~~~~~~~~~  211 (251)
                      .++|+||+|+++|+|++|.+||.+.........+..                       ...+..     .....++..+
T Consensus       180 ~~~Di~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (286)
T cd07847         180 PPVDVWAIGCVFAELLTGQPLWPGKSDVDQLYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPA  259 (286)
T ss_pred             chhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhccCCHHH
Confidence            899999999999999999999976554322211100                       000000     0013457889


Q ss_pred             HHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         212 IDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       212 ~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .+++.+||+.+|++|||+.|++.||||
T Consensus       260 ~~li~~~l~~~p~~Rp~~~eil~~~~f  286 (286)
T cd07847         260 LSFLKGCLQMDPTERLSCEELLEHPYF  286 (286)
T ss_pred             HHHHHHHhcCCccccCCHHHHhcCCCC
Confidence            999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=4.5e-38  Score=269.76  Aligned_cols=198  Identities=28%  Similarity=0.521  Sum_probs=158.5

Q ss_pred             CCC-CCCccceeeeeEeeC-CeEEEEEEccCCCCHHHHHHHhC-------------------------------------
Q psy3253           2 QQC-DSPYVVKYYGSYFKN-TDLWIVMEYCGAGSVSDIMRLRK-------------------------------------   42 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~-~~~~lv~e~~~~gsL~~~~~~~~-------------------------------------   42 (251)
                      +++ +||||+++++++... ..++++|||+++|+|.++++...                                     
T Consensus        65 ~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (338)
T cd05102          65 IHIGNHLNVVNLLGACTKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASV  144 (338)
T ss_pred             HHhccCcceeeEEeEecCCCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCc
Confidence            345 899999999988754 46899999999999999996421                                     


Q ss_pred             ------------------------CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccch
Q psy3253          43 ------------------------KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITN   98 (251)
Q Consensus        43 ------------------------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~   98 (251)
                                              ..+++..+..++.||+.||.|||++|++|||||                       
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiK-----------------------  201 (338)
T cd05102         145 LFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLA-----------------------  201 (338)
T ss_pred             cccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCc-----------------------
Confidence                                    247788899999999999999999999999988                       


Q ss_pred             hhhhhhhhcccCceecCCCCCeEecccccccccCccc--ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHh
Q psy3253          99 QIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE  176 (251)
Q Consensus        99 ~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~  176 (251)
                                |+||+++.++.++|+|||+++......  .......++..|+|||++.+..++.++|||||||++|+|++
T Consensus       202 ----------p~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~  271 (338)
T cd05102         202 ----------ARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFS  271 (338)
T ss_pred             ----------cceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHh
Confidence                      888888888999999999997543221  11223345677999999988889999999999999999997


Q ss_pred             -CCCCCCCCCcchhh-hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         177 -GKPPYGDIHPMRAI-FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       177 -g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                       |..||.+....... ..+....  ....+..+++++.+++.+||+.||++|||++|+++
T Consensus       272 ~g~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~el~~  329 (338)
T cd05102         272 LGASPYPGVQINEEFCQRLKDGT--RMRAPENATPEIYRIMLACWQGDPKERPTFSALVE  329 (338)
T ss_pred             CCCCCCCCCCccHHHHHHHhcCC--CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence             99999765433222 2222222  22235667899999999999999999999999984

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=100.00  E-value=6.5e-38  Score=260.49  Aligned_cols=198  Identities=26%  Similarity=0.405  Sum_probs=164.2

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||||+++++.|...+..|+||||+.+++|.+++.. ...+++.++..++.|++.||.|||+.|++|||||         
T Consensus        67 ~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~-~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~---------  136 (267)
T PHA03390         67 DNPNFIKLYYSVTTLKGHVLIMDYIKDGDLFDLLKK-EGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIK---------  136 (267)
T ss_pred             cCCCEEEEEEEEecCCeeEEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC---------
Confidence            799999999999999999999999999999999974 3589999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCC-CeEecccccccccCcccccccccccccccccccccccCCCCcchh
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD  163 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  163 (251)
                                              |+||+++.++ .++|+|||.+......    ....++..|+|||.+.+..++.++|
T Consensus       137 ------------------------p~nil~~~~~~~~~l~dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~D  188 (267)
T PHA03390        137 ------------------------LENVLYDRAKDRIYLCDYGLCKIIGTP----SCYDGTLDYFSPEKIKGHNYDVSFD  188 (267)
T ss_pred             ------------------------HHHEEEeCCCCeEEEecCccceecCCC----ccCCCCCcccChhhhcCCCCCchhh
Confidence                                    7788888777 8999999998654322    2234678899999998888999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcchh-hhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-HHHHhcChhhhh
Q psy3253         164 MWSLGITALEMAEGKPPYGDIHPMRA-IFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-ASEMLNHEFIQR  240 (251)
Q Consensus       164 vwslG~~l~~l~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-~~evl~hp~~~~  240 (251)
                      +||+|+++|++++|..||........ ..............+..+++.+.++|.+||+.+|.+||+ ++|+++||||..
T Consensus       189 vwslG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~h~~~~~  267 (267)
T PHA03390        189 WWAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIKHPFLKI  267 (267)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCcchhhHHHHHHhhcccCCcccccCHHHHHHHHHHhccChhhCCchHHHHhcCCcccC
Confidence            99999999999999999975433221 111111111222334568999999999999999999996 699999999963

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=100.00  E-value=2.9e-38  Score=264.93  Aligned_cols=211  Identities=25%  Similarity=0.379  Sum_probs=173.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++|+||+++++.+..++..|++|||+.+++|.+++... ...+++..+..++.|++.||.|||+.|++|||||    
T Consensus        54 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dik----  129 (285)
T cd05632          54 LEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLK----  129 (285)
T ss_pred             HHHcCCcCceeEEEEEecCCEEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCC----
Confidence            45789999999999999999999999999999999888643 3469999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||++...... .......++..|+|||.+.+..++
T Consensus       130 -----------------------------p~Nili~~~~~~kl~Dfg~~~~~~~~-~~~~~~~g~~~~~aPE~~~~~~~~  179 (285)
T cd05632         130 -----------------------------PENILLDDYGHIRISDLGLAVKIPEG-ESIRGRVGTVGYMAPEVLNNQRYT  179 (285)
T ss_pred             -----------------------------HHHEEECCCCCEEEecCCcceecCCC-CcccCCCCCcCccChHHhcCCCCC
Confidence                                         88899988899999999998654322 122234578899999999888899


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEML  233 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl  233 (251)
                      .++|+||+||++|++++|..||...........+... .......+..+++++.+|+.+||+.||++||+     +++++
T Consensus       180 ~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~  259 (285)
T cd05632         180 LSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLETEEVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVK  259 (285)
T ss_pred             cccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhccccccCccCCHHHHHHHHHHccCCHhHcCCCcccChHHHH
Confidence            9999999999999999999999765443222111111 11111234567899999999999999999999     88999


Q ss_pred             cChhhhhccCCC
Q psy3253         234 NHEFIQRHDTDP  245 (251)
Q Consensus       234 ~hp~~~~~~~~~  245 (251)
                      +|+||+..++..
T Consensus       260 ~~~~~~~~~~~~  271 (285)
T cd05632         260 RHPFFRNMNFKR  271 (285)
T ss_pred             cChhhhcCCHHH
Confidence            999999887664

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=2.5e-38  Score=274.87  Aligned_cols=207  Identities=26%  Similarity=0.458  Sum_probs=164.5

Q ss_pred             CCCCCCCccceeeeeEeeCC-----eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT-----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~-----~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      |+.++||||+++++++....     ..|+||||+. ++|.+++. ....+++..++.++.||+.||.|||++|++|||||
T Consensus        53 l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~-~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlk  130 (372)
T cd07853          53 LCFFKHDNVLSALDILQPPHIDPFEEIYVVTELMQ-SDLHKIIV-SPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIK  130 (372)
T ss_pred             HHhCCCCCcCCHhheecCCCccccceEEEEeeccc-cCHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC
Confidence            35689999999999998766     7999999996 58888875 45679999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~  154 (251)
                                                       |+||+++.++.++|+|||++........ ......+++.|+|||.+.
T Consensus       131 ---------------------------------p~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~  177 (372)
T cd07853         131 ---------------------------------PGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILM  177 (372)
T ss_pred             ---------------------------------hHHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcCCHHHHc
Confidence                                             8889999999999999999975432211 122335688899999987


Q ss_pred             cC-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC-----------------------CC--CCCC----CCCC
Q psy3253         155 EI-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP-----------------------TK--PPPS----FREP  204 (251)
Q Consensus       155 ~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~-----------------------~~--~~~~----~~~~  204 (251)
                      +. .++.++||||+||++|+|++|+.||.+.+.......+.                       ..  .++.    ....
T Consensus       178 ~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (372)
T cd07853         178 GSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLS  257 (372)
T ss_pred             CCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccC
Confidence            64 47889999999999999999999997654432221110                       00  0000    1122


Q ss_pred             CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         205 DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       205 ~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                      ...++++.+||.+||+.||++|||++|+++||||+...
T Consensus       258 ~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~~  295 (372)
T cd07853         258 SQATHEAVHLLCRMLVFDPDKRISAADALAHPYLDEGR  295 (372)
T ss_pred             CCCCHHHHHHHHHhCCCChhhCcCHHHHhcCHhhCCCc
Confidence            34588999999999999999999999999999998743

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=2.1e-38  Score=269.33  Aligned_cols=204  Identities=22%  Similarity=0.472  Sum_probs=152.5

Q ss_pred             CCCCCCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHh--------CCCCCHHHHHHHHHHHHHHHHHHHhCCcc
Q psy3253           1 MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLR--------KKTLSEDEIATILCDTLKGLEYLHLRRKI   70 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~--------~~~l~~~~~~~~~~~i~~~l~~LH~~~ii   70 (251)
                      |++++||||+++++++..  +...|++|||+. ++|.+++...        ...+++..++.++.||+.||.|||++|++
T Consensus        52 l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~iv  130 (317)
T cd07868          52 LRELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVL  130 (317)
T ss_pred             HHhcCCCCCcceeeeEecCCCcEEEEEEeccC-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEE
Confidence            457899999999999854  457899999995 5898887522        12589999999999999999999999999


Q ss_pred             ccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceec----CCCCCeEecccccccccCcccc---ccccccc
Q psy3253          71 HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL----NTEGHAKLADFGVAGQLTDTMA---KRNTVIG  143 (251)
Q Consensus        71 H~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~----~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~  143 (251)
                      |||||                                 |+||++    +.++.+||+|||+++.......   ......+
T Consensus       131 HrDlk---------------------------------p~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~  177 (317)
T cd07868         131 HRDLK---------------------------------PANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVV  177 (317)
T ss_pred             cCCCC---------------------------------HHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccc
Confidence            99999                                 556665    3456799999999976543211   1233467


Q ss_pred             cccccccccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcch------------hhhhcCCCCC----------C-
Q psy3253         144 TPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMR------------AIFMIPTKPP----------P-  199 (251)
Q Consensus       144 ~~~y~aPE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~------------~~~~~~~~~~----------~-  199 (251)
                      |+.|+|||++.+ ..++.++|+||+||++|+|++|.+||.......            ..........          + 
T Consensus       178 t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (317)
T cd07868         178 TFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPE  257 (317)
T ss_pred             cccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccc
Confidence            889999999876 458889999999999999999999995332110            0000000000          0 


Q ss_pred             -----------CC----------CCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         200 -----------SF----------REPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       200 -----------~~----------~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                                 ..          ......+.++.++|.+||++||++|||++|+|+||||
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         258 HSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             hhhhhhhhhccccCcccccchHHhcCCCCChHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence                       00          0011234678999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0667|consensus

Probab=100.00  E-value=1.6e-38  Score=278.56  Aligned_cols=199  Identities=30%  Similarity=0.453  Sum_probs=158.9

Q ss_pred             CccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccc
Q psy3253           7 PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDR   85 (251)
Q Consensus         7 pniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~   85 (251)
                      =|+|+++++|...+|+|||+|.++ .+|++++++++ .+|+...++.++.||+.||.+||+.||||+||||||||+.-. 
T Consensus       248 ~n~Vrm~d~F~fr~HlciVfELL~-~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~-  325 (586)
T KOG0667|consen  248 YNIVRMLDYFYFRNHLCIVFELLS-TNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDP-  325 (586)
T ss_pred             eeEEEeeeccccccceeeeehhhh-hhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccC-
Confidence            389999999999999999999994 59999998554 679999999999999999999999999999999666666521 


Q ss_pred             cccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhHH
Q psy3253          86 LDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMW  165 (251)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvw  165 (251)
                                                    ....+||+|||+++.......   ....+..|+|||++.+.+|+.+.|||
T Consensus       326 ------------------------------~r~~vKVIDFGSSc~~~q~vy---tYiQSRfYRAPEVILGlpY~~~IDmW  372 (586)
T KOG0667|consen  326 ------------------------------KRSRIKVIDFGSSCFESQRVY---TYIQSRFYRAPEVILGLPYDTAIDMW  372 (586)
T ss_pred             ------------------------------CcCceeEEecccccccCCcce---eeeeccccccchhhccCCCCCcccee
Confidence                                          122599999999986654322   55678899999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CCC--------------------------------------------
Q psy3253         166 SLGITALEMAEGKPPYGDIHPMRAIFMIPT---KPP--------------------------------------------  198 (251)
Q Consensus       166 slG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~~--------------------------------------------  198 (251)
                      ||||++.||++|.+.|.+.+....+..+..   .++                                            
T Consensus       373 SLGCIlAEL~tG~PLfpG~ne~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~  452 (586)
T KOG0667|consen  373 SLGCILAELFTGEPLFPGDNEYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRK  452 (586)
T ss_pred             ehhhhHHhHhcCccccCCCCHHHHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeecccccccchhhhhhhhh
Confidence            999999999999999976544433332210   000                                            


Q ss_pred             --CCCCCC-----------CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         199 --PSFREP-----------DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       199 --~~~~~~-----------~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                        .....|           ..-...+.|++++||.+||.+|+|+.|+|+||||+.
T Consensus       453 ~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~~  507 (586)
T KOG0667|consen  453 ARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERITPAQALNHPFLTG  507 (586)
T ss_pred             hcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCCHHHHhcCccccc
Confidence              000001           011245899999999999999999999999999984

>KOG0690|consensus

Probab=100.00  E-value=1.7e-39  Score=264.15  Aligned_cols=208  Identities=29%  Similarity=0.530  Sum_probs=189.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+..+||.+..+..+|++.+++|.||||..||.|+-.+. +...|++..++.+..+|+.||.|||+++|++||+|     
T Consensus       222 L~~~~HPFLt~LKYsFQt~drlCFVMeyanGGeLf~HLs-rer~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlK-----  295 (516)
T KOG0690|consen  222 LQNCRHPFLTSLKYSFQTQDRLCFVMEYANGGELFFHLS-RERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLK-----  295 (516)
T ss_pred             HHhccCcHHHHhhhhhccCceEEEEEEEccCceEeeehh-hhhcccchhhhhhhHHHHHHhhhhhhCCeeeeech-----
Confidence            467799999999999999999999999999999988776 56789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  .+|.+++++|++||.|||+++.-........+..|||.|.|||++....|..
T Consensus       296 ----------------------------LENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgr  347 (516)
T KOG0690|consen  296 ----------------------------LENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGR  347 (516)
T ss_pred             ----------------------------hhhheeccCCceEeeecccchhcccccceeccccCChhhcCchhhccccccc
Confidence                                        7899999999999999999986655555667789999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~h  235 (251)
                      ++|-|.+|+++|+|++|+.||.+.+.......+...   ....|..++++...|+..+|..||++|.     .+.||.+|
T Consensus       348 aVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~e---d~kFPr~ls~eAktLLsGLL~kdP~kRLGgGpdDakEi~~h  424 (516)
T KOG0690|consen  348 AVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILME---DLKFPRTLSPEAKTLLSGLLKKDPKKRLGGGPDDAKEIMRH  424 (516)
T ss_pred             eeehhhhhHHHHHHHhccCcccccchhHHHHHHHhh---hccCCccCCHHHHHHHHHHhhcChHhhcCCCchhHHHHHhh
Confidence            999999999999999999999998888887766655   3344788999999999999999999995     68999999


Q ss_pred             hhhhhccCCC
Q psy3253         236 EFIQRHDTDP  245 (251)
Q Consensus       236 p~~~~~~~~~  245 (251)
                      +||...+|+.
T Consensus       425 ~FF~~v~W~~  434 (516)
T KOG0690|consen  425 RFFASVDWEA  434 (516)
T ss_pred             hhhccCCHHH
Confidence            9999999975

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=100.00  E-value=8.3e-38  Score=259.51  Aligned_cols=199  Identities=22%  Similarity=0.378  Sum_probs=165.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+.+.++||||+.+|+|.+++......+++..++.++.|++.||.|||++|++|||||     
T Consensus        60 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dik-----  134 (266)
T cd05064          60 LGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLA-----  134 (266)
T ss_pred             HhcCCCCCcCeEEEEEecCCCcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccc-----
Confidence            457899999999999999999999999999999999997556689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++++|||.+........ ......++..|+|||.+.+..++
T Consensus       135 ----------------------------p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  186 (266)
T cd05064         135 ----------------------------AHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFS  186 (266)
T ss_pred             ----------------------------HhhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCHHHHhhCCcc
Confidence                                        8888888899999999998754322111 11122345679999999888999


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .++||||+||++|++++ |..||.+.........+.....  .+.+..++..+.+++.+||+.+|++|||++|+++
T Consensus       187 ~~~Di~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~  260 (266)
T cd05064         187 SASDVWSFGIVMWEVMSYGERPYWDMSGQDVIKAVEDGFR--LPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHS  260 (266)
T ss_pred             chhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHH
Confidence            99999999999999775 9999987665554444433322  2335678999999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=100.00  E-value=2.9e-38  Score=261.43  Aligned_cols=205  Identities=42%  Similarity=0.823  Sum_probs=169.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni~   80 (251)
                      ++++||||+++++++..+...++++||+.+++|.+++......+++..+..++.|++.||.|||+ .|++|+|||     
T Consensus        54 ~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~-----  128 (265)
T cd06605          54 HKCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVK-----  128 (265)
T ss_pred             HHCCCCchhhhheeeecCCEEEEEEEecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCC-----
Confidence            46789999999999999999999999999999999997555789999999999999999999999 999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||.+.........  ...++..|+|||.+.+..++.
T Consensus       129 ----------------------------~~ni~~~~~~~~~l~d~g~~~~~~~~~~~--~~~~~~~y~~PE~~~~~~~~~  178 (265)
T cd06605         129 ----------------------------PSNILVNSRGQIKLCDFGVSGQLVNSLAK--TFVGTSSYMAPERIQGNDYSV  178 (265)
T ss_pred             ----------------------------HHHEEECCCCCEEEeecccchhhHHHHhh--cccCChhccCHHHHcCCCCCc
Confidence                                        88999999999999999998655432211  155778899999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCC-----cchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIH-----PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++|+||+|+++|++++|..||...+     .......+.....+... ...+++++.++|.+||..||++|||++|++.|
T Consensus       179 ~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  257 (265)
T cd06605         179 KSDIWSLGLSLIELATGRFPYPPENDPPDGIFELLQYIVNEPPPRLP-SGKFSPDFQDFVNLCLIKDPRERPSYKELLEH  257 (265)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCccccccccHHHHHHHHhcCCCCCCC-hhhcCHHHHHHHHHHcCCCchhCcCHHHHhhC
Confidence            9999999999999999999996542     11122222222222221 12278999999999999999999999999999


Q ss_pred             hhhhhcc
Q psy3253         236 EFIQRHD  242 (251)
Q Consensus       236 p~~~~~~  242 (251)
                      |||+++.
T Consensus       258 ~~~~~~~  264 (265)
T cd06605         258 PFIKKYE  264 (265)
T ss_pred             chhhccc
Confidence            9998753

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>PHA03211 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4.7e-38  Score=278.87  Aligned_cols=206  Identities=22%  Similarity=0.299  Sum_probs=161.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++..+...++|||++. ++|.+++......+++..++.++.|++.||.|||++||+|||||     
T Consensus       214 L~~L~HpnIv~l~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLK-----  287 (461)
T PHA03211        214 LRRLSHPAVLALLDVRVVGGLTCLVLPKYR-SDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIK-----  287 (461)
T ss_pred             HHHCCCCCCCcEEEEEEECCEEEEEEEccC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCC-----
Confidence            467899999999999999999999999995 69999887555679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.++|+|||+++.......  ......||..|+|||++.+..+
T Consensus       288 ----------------------------P~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~  339 (461)
T PHA03211        288 ----------------------------TENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPY  339 (461)
T ss_pred             ----------------------------HHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCCC
Confidence                                        8888888889999999999975432211  1223458999999999999899


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCc--------chhhhhcCCC------CC-------------------------C
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHP--------MRAIFMIPTK------PP-------------------------P  199 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~--------~~~~~~~~~~------~~-------------------------~  199 (251)
                      +.++|||||||++|+|++|..++.....        ......+...      .+                         .
T Consensus       340 ~~~sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  419 (461)
T PHA03211        340 TPSVDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPAYTRP  419 (461)
T ss_pred             CchHHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCccCCc
Confidence            9999999999999999998755422110        0111100000      00                         0


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         200 SFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       200 ~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      .+.....++..+.+||.+||+.||++|||++|+|+||||+.
T Consensus       420 ~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~hp~f~~  460 (461)
T PHA03211        420 AWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRLPLFQS  460 (461)
T ss_pred             chhhhccccchHHHHHHHHcccChhhCcCHHHHhhCcccCC
Confidence            00011134568999999999999999999999999999974

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=3.9e-38  Score=272.03  Aligned_cols=202  Identities=25%  Similarity=0.438  Sum_probs=159.2

Q ss_pred             CCCCCCccceeeeeEeeC------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      +.++||||+++++++...      ...|+||||+++ +|.+.+.   ..+++..+..++.|++.||.|||++|++|||||
T Consensus        71 ~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~---~~l~~~~~~~~~~qi~~aL~~LH~~givHrDik  146 (355)
T cd07874          71 KCVNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVIQ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK  146 (355)
T ss_pred             HHhCCCchhceeeeeeccccccccceeEEEhhhhcc-cHHHHHh---hcCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence            467999999999998643      357999999965 7777765   358899999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.++|+|||+++..... .......+++.|+|||++.+
T Consensus       147 ---------------------------------p~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~t~~y~aPE~~~~  192 (355)
T cd07874         147 ---------------------------------PSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVILG  192 (355)
T ss_pred             ---------------------------------hHHEEECCCCCEEEeeCcccccCCCc-cccCCccccCCccCHHHHcC
Confidence                                             88889988999999999999764432 22233467889999999998


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC-----------------------CCC---------------
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP-----------------------TKP---------------  197 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~-----------------------~~~---------------  197 (251)
                      ..++.++|+||+||++|+|++|+.||.+.+.........                       ...               
T Consensus       193 ~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (355)
T cd07874         193 MGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSL  272 (355)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccc
Confidence            889999999999999999999999997654322111000                       000               


Q ss_pred             -CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         198 -PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       198 -~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                       +.........+.++.++|.+||+.||++|||++|+++||||+..
T Consensus       273 ~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~hp~~~~~  317 (355)
T cd07874         273 FPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYINVW  317 (355)
T ss_pred             cccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcCcchhcc
Confidence             00000112235678999999999999999999999999999754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG0577|consensus

Probab=100.00  E-value=1.4e-39  Score=281.58  Aligned_cols=203  Identities=47%  Similarity=0.876  Sum_probs=185.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |.++.|||+|.+.|+|..+...+|||||| -||-++++.....++.+-++..++.+.+.||.|||+.+.||||||     
T Consensus        80 L~~l~HPntieYkgCyLre~TaWLVMEYC-lGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiK-----  153 (948)
T KOG0577|consen   80 LRQLRHPNTIEYKGCYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNRIHRDIK-----  153 (948)
T ss_pred             HHhccCCCcccccceeeccchHHHHHHHH-hccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhHHhhhcc-----
Confidence            46899999999999999999999999999 569999998888999999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc---cCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---EIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~  157 (251)
                                                  ..||+++..|.+||+|||.+....    ....++|||.|||||++.   .+.
T Consensus       154 ----------------------------AGNILLse~g~VKLaDFGSAsi~~----PAnsFvGTPywMAPEVILAMDEGq  201 (948)
T KOG0577|consen  154 ----------------------------AGNILLSEPGLVKLADFGSASIMA----PANSFVGTPYWMAPEVILAMDEGQ  201 (948)
T ss_pred             ----------------------------ccceEecCCCeeeeccccchhhcC----chhcccCCccccchhHheeccccc
Confidence                                        889999999999999999996544    345688999999999994   577


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      |+.++||||||+++.++...++|+.+.+.+...+-|..+.++.+. ...|+..|++|+..||+.-|++|||.++++.|+|
T Consensus       202 YdgkvDvWSLGITCIELAERkPPlFnMNAMSALYHIAQNesPtLq-s~eWS~~F~~Fvd~CLqKipqeRptse~ll~H~f  280 (948)
T KOG0577|consen  202 YDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTLQ-SNEWSDYFRNFVDSCLQKIPQERPTSEELLKHRF  280 (948)
T ss_pred             cCCccceeeccchhhhhhhcCCCccCchHHHHHHHHHhcCCCCCC-CchhHHHHHHHHHHHHhhCcccCCcHHHHhhcch
Confidence            999999999999999999999999999999999888888887775 5668999999999999999999999999999999


Q ss_pred             hhhcc
Q psy3253         238 IQRHD  242 (251)
Q Consensus       238 ~~~~~  242 (251)
                      +.+..
T Consensus       281 v~R~R  285 (948)
T KOG0577|consen  281 VLRER  285 (948)
T ss_pred             hccCC
Confidence            97643

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=100.00  E-value=6.2e-38  Score=281.31  Aligned_cols=205  Identities=29%  Similarity=0.463  Sum_probs=170.4

Q ss_pred             CCCCCCccceeeeeEeeCC--------eEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhCCcc
Q psy3253           2 QQCDSPYVVKYYGSYFKNT--------DLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLHLRRKI   70 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~--------~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH~~~ii   70 (251)
                      ..++|+|++++++.+....        .+++||||+.+|+|.+++...   ...+++..+..++.|++.||.|||++|++
T Consensus        86 ~~~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~Ii  165 (496)
T PTZ00283         86 LNCDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMI  165 (496)
T ss_pred             hcCCCCcEEEeecceecccccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEe
Confidence            4678999999998875432        378999999999999998633   35689999999999999999999999999


Q ss_pred             ccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc--cccccccccccccc
Q psy3253          71 HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT--MAKRNTVIGTPFWM  148 (251)
Q Consensus        71 H~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~~y~  148 (251)
                      |||||                                 |+||+++.++.+||+|||+++.....  ........||+.|+
T Consensus       166 HrDLK---------------------------------P~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~  212 (496)
T PTZ00283        166 HRDIK---------------------------------SANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYV  212 (496)
T ss_pred             cCCCC---------------------------------HHHEEEeCCCCEEEEecccCeeccccccccccccccCCccee
Confidence            99988                                 88999998999999999998755422  11223456889999


Q ss_pred             cccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC
Q psy3253         149 APEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT  228 (251)
Q Consensus       149 aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  228 (251)
                      |||.+.+..++.++|||||||++|+|++|..||.+.+.......+......  ..+..+++++.+++.+||..||++||+
T Consensus       213 aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~L~~dP~~RPs  290 (496)
T PTZ00283        213 APEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYD--PLPPSISPEMQEIVTALLSSDPKRRPS  290 (496)
T ss_pred             CHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCC--CCCCCCCHHHHHHHHHHcccChhhCcC
Confidence            999999989999999999999999999999999876655544444333222  235668999999999999999999999


Q ss_pred             HHHHhcChhhhhc
Q psy3253         229 ASEMLNHEFIQRH  241 (251)
Q Consensus       229 ~~evl~hp~~~~~  241 (251)
                      ++++++|||++..
T Consensus       291 ~~ell~~p~~~~~  303 (496)
T PTZ00283        291 SSKLLNMPICKLF  303 (496)
T ss_pred             HHHHHhCHHHHHh
Confidence            9999999998753

>KOG1095|consensus

Probab=100.00  E-value=1.8e-38  Score=293.88  Aligned_cols=199  Identities=24%  Similarity=0.488  Sum_probs=175.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh------CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR------KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~------~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |++++|||||++.|++......++++|||+||+|..|++..      ...++.++.+.++.+|++|.+||+++++|||||
T Consensus       749 m~~f~HpNiv~liGv~l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDL  828 (1025)
T KOG1095|consen  749 MSKFDHPNIVSLIGVCLDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDL  828 (1025)
T ss_pred             HhcCCCcceeeEEEeecCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcch
Confidence            67899999999999999999999999999999999999866      567999999999999999999999999999997


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc-cccc-cccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT-MAKR-NTVIGTPFWMAPEV  152 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~-~~~~-~~~~~~~~y~aPE~  152 (251)
                      .                                 .+|++++....+||+|||+|+.+... .... ........|||||.
T Consensus       829 A---------------------------------aRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEs  875 (1025)
T KOG1095|consen  829 A---------------------------------ARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPES  875 (1025)
T ss_pred             h---------------------------------hhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHH
Confidence            7                                 77778888889999999999854322 2222 22345678999999


Q ss_pred             cccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHH
Q psy3253         153 IQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE  231 (251)
Q Consensus       153 ~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  231 (251)
                      +....++.|+|||||||++||+++ |..||++.++.+.......+.  .+..|..|+..+.++|..||+.+|++||++..
T Consensus       876 l~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~gg--RL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~  953 (1025)
T KOG1095|consen  876 LKDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGG--RLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRT  953 (1025)
T ss_pred             HhhcccccccchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCC--ccCCCCCCChHHHHHHHHHccCChhhCccHHH
Confidence            999999999999999999999999 999999998888877444444  66779999999999999999999999999999


Q ss_pred             Hhc
Q psy3253         232 MLN  234 (251)
Q Consensus       232 vl~  234 (251)
                      +++
T Consensus       954 i~~  956 (1025)
T KOG1095|consen  954 IVE  956 (1025)
T ss_pred             HHh
Confidence            987

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=100.00  E-value=6.2e-38  Score=262.07  Aligned_cols=200  Identities=52%  Similarity=0.982  Sum_probs=163.3

Q ss_pred             CCCccceeeeeEee------CCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           5 DSPYVVKYYGSYFK------NTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         5 ~hpniv~l~~~~~~------~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      +||||+++++++..      ....|++|||+.+|+|.+++... ...+++..+..++.|++.||.|||+.|++|+|+|  
T Consensus        71 ~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~--  148 (282)
T cd06636          71 HHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIK--  148 (282)
T ss_pred             CCCcEEEEeeehhcccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC--
Confidence            79999999999853      45789999999999999998743 3568899999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc---
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---  154 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---  154 (251)
                                                     |+||+++.++.++|+|||.+..............++..|+|||.+.   
T Consensus       149 -------------------------------~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~  197 (282)
T cd06636         149 -------------------------------GQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDE  197 (282)
T ss_pred             -------------------------------HHHEEECCCCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCccc
Confidence                                           8889998899999999999875543222333456788899999885   


Q ss_pred             --cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         155 --EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       155 --~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                        ...++.++|+||+||++|++++|..||....+......+........ ....++.++.++|.+||+.||.+|||++|+
T Consensus       198 ~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~cl~~~p~~Rp~~~el  276 (282)
T cd06636         198 NPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKL-KSKKWSKKFIDFIEGCLVKNYLSRPSTEQL  276 (282)
T ss_pred             CcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHhhhhhHhhCCCCCC-cccccCHHHHHHHHHHhCCChhhCcCHHHH
Confidence              34577899999999999999999999976554444433322222221 234578999999999999999999999999


Q ss_pred             hcChhh
Q psy3253         233 LNHEFI  238 (251)
Q Consensus       233 l~hp~~  238 (251)
                      +.||||
T Consensus       277 l~~~~~  282 (282)
T cd06636         277 LKHPFI  282 (282)
T ss_pred             hcCCCC
Confidence            999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=5.7e-38  Score=271.91  Aligned_cols=202  Identities=25%  Similarity=0.426  Sum_probs=159.7

Q ss_pred             CCCCCCCccceeeeeEeeC------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |+.++||||+++++++...      ...|+||||+.+ +|.+++.   ..+++..+..++.|++.||.|||++|++||||
T Consensus        77 l~~l~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~---~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dl  152 (364)
T cd07875          77 MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA-NLCQVIQ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDL  152 (364)
T ss_pred             HHhcCCCCccccceeecccccccccCeEEEEEeCCCC-CHHHHHH---hcCCHHHHHHHHHHHHHHHHHHhhCCeecCCC
Confidence            3568999999999988543      357999999965 7877775   35889999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                      |                                 |+||+++.++.++|+|||+++..... .......++..|+|||++.
T Consensus       153 k---------------------------------p~NIll~~~~~~kL~DfG~a~~~~~~-~~~~~~~~t~~y~aPE~~~  198 (364)
T cd07875         153 K---------------------------------PSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVIL  198 (364)
T ss_pred             C---------------------------------HHHEEECCCCcEEEEeCCCccccCCC-CcccCCcccCCcCCHHHHh
Confidence            8                                 88999999999999999999754432 1223345788999999999


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC---------------------CC-------------
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP---------------------PS-------------  200 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~---------------------~~-------------  200 (251)
                      +..++.++|||||||++|+|++|+.||.+.+.......+.....                     +.             
T Consensus       199 ~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (364)
T cd07875         199 GMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDV  278 (364)
T ss_pred             CCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCccc
Confidence            98999999999999999999999999976544332221110000                     00             


Q ss_pred             -----CCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         201 -----FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       201 -----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                           .......+..+.++|.+||+.||++|||++|+|+||||..
T Consensus       279 ~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~hp~~~~  323 (364)
T cd07875         279 LFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV  323 (364)
T ss_pred             cccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcCccccc
Confidence                 0001123567899999999999999999999999999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.7e-37  Score=257.41  Aligned_cols=204  Identities=46%  Similarity=0.867  Sum_probs=170.8

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      .|||++++++++..+...|++|||+.+++|.++++.  ..+++..+..++.|++.||.|||+.|++|+||+         
T Consensus        60 ~~~~vi~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~---------  128 (277)
T cd06917          60 QPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKA--GPIAEKYISVIIREVLVALKYIHKVGVIHRDIK---------  128 (277)
T ss_pred             CCCCeeeEeeeeeeCCEEEEEEecCCCCcHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcC---------
Confidence            599999999999999999999999999999999863  478999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCCcchh
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDCVAD  163 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~~D  163 (251)
                                              |+||+++.++.++|+|||.+..............++..|+|||.+.+ ..++.++|
T Consensus       129 ------------------------p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  184 (277)
T cd06917         129 ------------------------AANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKAD  184 (277)
T ss_pred             ------------------------HHHEEEcCCCCEEEccCCceeecCCCccccccccCCcceeCHHHhccCCccccchh
Confidence                                    88889988999999999998766544333344567888999998864 45688999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       164 vwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                      +||+|+++|+|++|..||.+.........+.....+... ...++.++.+++.+||+.||++||+++|++.|+||++...
T Consensus       185 v~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~~~~~~~~~~  263 (277)
T cd06917         185 IWSLGITIYEMATGNPPYSDVDAFRAMMLIPKSKPPRLE-DNGYSKLLREFVAACLDEEPKERLSAEELLKSKWIKAHSK  263 (277)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCChhhhhhccccCCCCCCC-cccCCHHHHHHHHHHcCCCcccCcCHHHHhhChHhhcccc
Confidence            999999999999999999776655544433333222221 2237889999999999999999999999999999988664


Q ss_pred             C
Q psy3253         244 D  244 (251)
Q Consensus       244 ~  244 (251)
                      .
T Consensus       264 ~  264 (277)
T cd06917         264 T  264 (277)
T ss_pred             C
Confidence            3

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.7e-38  Score=270.89  Aligned_cols=205  Identities=24%  Similarity=0.478  Sum_probs=162.6

Q ss_pred             CCCCCCCccceeeeeEeeC------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |++++||||+++++++...      ...|++++++ +++|.+++.  ...+++..+..++.||+.||.|||++|++||||
T Consensus        68 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdi  144 (343)
T cd07878          68 LKHMKHENVIGLLDVFTPATSIENFNEVYLVTNLM-GADLNNIVK--CQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDL  144 (343)
T ss_pred             HHhcCCCchhhhhhhhcccccccccCcEEEEeecC-CCCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCeecccC
Confidence            4678999999999988543      3579999998 779988875  457999999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                      |                                 |+||+++.++.+||+|||++......   .....+++.|+|||++.
T Consensus       145 k---------------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~t~~y~aPE~~~  188 (343)
T cd07878         145 K---------------------------------PSNVAVNEDCELRILDFGLARQADDE---MTGYVATRWYRAPEIML  188 (343)
T ss_pred             C---------------------------------hhhEEECCCCCEEEcCCccceecCCC---cCCccccccccCchHhc
Confidence            8                                 88899988999999999999765432   23345788999999987


Q ss_pred             c-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CCC-------------------CCC------CCCC
Q psy3253         155 E-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KPP-------------------PSF------REPD  205 (251)
Q Consensus       155 ~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~~-------------------~~~------~~~~  205 (251)
                      + ..++.++||||+||++|+|++|..||.+.+.......+..   ...                   +..      ....
T Consensus       189 ~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T cd07878         189 NWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVGTPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFR  268 (343)
T ss_pred             CCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhcchhhHHHHhhccccccchhHHHhcc
Confidence            6 5688899999999999999999999976443222111100   000                   000      0012


Q ss_pred             CCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         206 VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       206 ~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      ..++.+.+|+.+||+.||++|||++|+++||||......
T Consensus       269 ~~~~~~~~li~~mL~~dp~~R~s~~ell~hp~~~~~~~~  307 (343)
T cd07878         269 GANPLAIDLLEKMLVLDSDKRISASEALAHPYFSQYHDP  307 (343)
T ss_pred             CCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhccCCC
Confidence            456788999999999999999999999999999876544

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=100.00  E-value=5.6e-38  Score=259.02  Aligned_cols=207  Identities=36%  Similarity=0.562  Sum_probs=173.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++.+..+...|+++||+.+++|.+++.. ...+++..+..++.|++.||.|||+.|++|+||+      
T Consensus        48 ~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~------  120 (265)
T cd05579          48 SQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDLASLLEN-VGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLK------  120 (265)
T ss_pred             HhCCCcchhHHHHheecCcEEEEEEecCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCC------
Confidence            467899999999999999999999999999999999973 4589999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--------ccccccccccccccccc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--------KRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--------~~~~~~~~~~y~aPE~~  153 (251)
                                                 |+||+++.++.++|+|||++........        ......++..|+|||..
T Consensus       121 ---------------------------~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~  173 (265)
T cd05579         121 ---------------------------PDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVI  173 (265)
T ss_pred             ---------------------------HHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHh
Confidence                                       8899999999999999999865432211        22234467789999999


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH---H
Q psy3253         154 QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA---S  230 (251)
Q Consensus       154 ~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~---~  230 (251)
                      .....+.++|+||||+++|++++|..||...........+..... ........+..+.+++.+||+.+|++|||+   .
T Consensus       174 ~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~  252 (265)
T cd05579         174 LGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKI-EWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIE  252 (265)
T ss_pred             cCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCc-CCCccccCCHHHHHHHHHHhcCCHhhcCCCccHH
Confidence            888889999999999999999999999977666555544433221 221122248999999999999999999999   9


Q ss_pred             HHhcChhhhhccC
Q psy3253         231 EMLNHEFIQRHDT  243 (251)
Q Consensus       231 evl~hp~~~~~~~  243 (251)
                      ++++||||+..+|
T Consensus       253 ~~l~~~~~~~~~~  265 (265)
T cd05579         253 EIKNHPFFKGIDW  265 (265)
T ss_pred             HHhcCccccCCCC
Confidence            9999999998877

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=100.00  E-value=1.5e-37  Score=255.76  Aligned_cols=202  Identities=27%  Similarity=0.509  Sum_probs=169.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++..+...++||||+.+++|.+++.... ..+++..+..++.+++.||+|||++|++|+|||    
T Consensus        53 l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~----  128 (256)
T cd08220          53 LKLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLK----  128 (256)
T ss_pred             HhhCCCCchhheeeeEecCCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC----
Confidence            467899999999999999999999999999999999997543 458999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCC-CCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.+ +.++++|||.+....... ......++..|+|||.+.+..+
T Consensus       129 -----------------------------~~nil~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~  178 (256)
T cd08220         129 -----------------------------TQNILLDKHKMVVKIGDFGISKILSSKS-KAYTVVGTPCYISPELCEGKPY  178 (256)
T ss_pred             -----------------------------HHHEEEcCCCCEEEEccCCCceecCCCc-cccccccCCcccCchhccCCCC
Confidence                                         778888644 457999999997654332 2223456788999999988888


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +.++|+||+|+++|++++|..||...+.......+......  ..+..+++++.+++.+||..+|++|||++|+++||||
T Consensus       179 ~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~~p~~  256 (256)
T cd08220         179 NQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGTFA--PISDRYSPDLRQLILSMLNLDPSKRPQLSQIMAQPIC  256 (256)
T ss_pred             CcccchHHHHHHHHHHHhCCCCcccCchHHHHHHHHhcCCC--CCCCCcCHHHHHHHHHHccCChhhCCCHHHHhhCCCC
Confidence            99999999999999999999999776655555444433222  2345679999999999999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=100.00  E-value=1e-38  Score=263.16  Aligned_cols=203  Identities=37%  Similarity=0.651  Sum_probs=167.1

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++......+++|||+.+++|.+++. ....+++.++..++.|++.||.+||+.|++|+|||      
T Consensus        53 ~~l~~~~i~~~~~~~~~~~~~~~v~~~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dik------  125 (260)
T PF00069_consen   53 RRLRHPNIVQILDVFQDDNYLYIVMEYCPGGSLQDYLQ-KNKPLSEEEILKIAYQILEALAYLHSKGIVHRDIK------  125 (260)
T ss_dssp             HHHTBTTBCHEEEEEEESSEEEEEEEEETTEBHHHHHH-HHSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBS------
T ss_pred             cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc------
Confidence            35689999999999999999999999999999999997 56789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc-cCCCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-EIGYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~  160 (251)
                                                 |+||+++.++.++|+|||.+..............++..|+|||.+. +..++.
T Consensus       126 ---------------------------p~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  178 (260)
T PF00069_consen  126 ---------------------------PENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQGKKYTR  178 (260)
T ss_dssp             ---------------------------GGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTTSSBST
T ss_pred             ---------------------------ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                       8999999999999999999975433333344556788999999998 788999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCC---cchhhhhcCC-CCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      ++|+||+|+++|+|++|..||....   .......... ............+.++.+++.+||+.||++|||++++++||
T Consensus       179 ~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~~~  258 (260)
T PF00069_consen  179 KSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQSREKSEELRDLIKKMLSKDPEQRPSAEELLKHP  258 (260)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHTSG
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhcccccccccccccchhHHHHHHHHHHHccCChhHCcCHHHHhcCC
Confidence            9999999999999999999998762   2222211111 10011111122248999999999999999999999999999


Q ss_pred             hh
Q psy3253         237 FI  238 (251)
Q Consensus       237 ~~  238 (251)
                      ||
T Consensus       259 ~~  260 (260)
T PF00069_consen  259 WF  260 (260)
T ss_dssp             GG
T ss_pred             CC
Confidence            98

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=100.00  E-value=1.6e-37  Score=263.21  Aligned_cols=211  Identities=25%  Similarity=0.420  Sum_probs=166.4

Q ss_pred             CCCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++.+.  ...++||||+. ++|.+++......+++.++..++.|++.||.|||+.|++|||||   
T Consensus        60 l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~---  135 (309)
T cd07845          60 LLNLRHPNIVELKEVVVGKHLDSIFLVMEYCE-QDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLK---  135 (309)
T ss_pred             HHhCCCCCCcceEEEEecCCCCeEEEEEecCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC---
Confidence            3578999999999999754  46899999996 48999887556789999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IG  157 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~  157 (251)
                                                    |+||+++.++.++|+|||.+..............++..|+|||.+.+ ..
T Consensus       136 ------------------------------p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  185 (309)
T cd07845         136 ------------------------------VSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTT  185 (309)
T ss_pred             ------------------------------HHHEEECCCCCEEECccceeeecCCccCCCCcccccccccChhhhcCCCC
Confidence                                          88999999999999999999765433222223345677999999865 55


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC---C---------------CCCCC---------CCCCCCHH
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK---P---------------PPSFR---------EPDVWTPE  210 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~---~---------------~~~~~---------~~~~~~~~  210 (251)
                      ++.++|+||+||++|++++|.+||.+.+.......+...   .               .....         .....+++
T Consensus       186 ~~~~~DvwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (309)
T cd07845         186 YTTAIDMWAVGCILAELLAHKPLLPGKSEIEQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEA  265 (309)
T ss_pred             cCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhccccCHH
Confidence            788999999999999999999999765544332211110   0               00000         01225788


Q ss_pred             HHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         211 FIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       211 ~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      +.++|.+||+.||++|||++|+++||||+......
T Consensus       266 ~~~li~~ml~~dp~~R~t~~~il~h~~f~~~~~~~  300 (309)
T cd07845         266 GLRLLNFLLMYDPKKRATAEEALESSYFKEKPLPC  300 (309)
T ss_pred             HHHHHHHHhcCChhhCcCHHHHhcChhhccCCCCC
Confidence            99999999999999999999999999998765543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=100.00  E-value=9.3e-38  Score=265.18  Aligned_cols=204  Identities=22%  Similarity=0.460  Sum_probs=152.3

Q ss_pred             CCCCCCCccceeeeeEe--eCCeEEEEEEccCCCCHHHHHHHh--------CCCCCHHHHHHHHHHHHHHHHHHHhCCcc
Q psy3253           1 MQQCDSPYVVKYYGSYF--KNTDLWIVMEYCGAGSVSDIMRLR--------KKTLSEDEIATILCDTLKGLEYLHLRRKI   70 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~--~~~~~~lv~e~~~~gsL~~~~~~~--------~~~l~~~~~~~~~~~i~~~l~~LH~~~ii   70 (251)
                      |++++||||+++++++.  .+...++||||+. ++|.+++...        ...+++..++.++.||+.||.|||++|++
T Consensus        52 l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~iv  130 (317)
T cd07867          52 LRELKHPNVIALQKVFLSHSDRKVWLLFDYAE-HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVL  130 (317)
T ss_pred             HHhCCCCCeeeEEEEEeccCCCeEEEEEeeeC-CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEE
Confidence            45789999999999885  3567899999996 5888887522        13588999999999999999999999999


Q ss_pred             ccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceec----CCCCCeEecccccccccCcccc---ccccccc
Q psy3253          71 HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL----NTEGHAKLADFGVAGQLTDTMA---KRNTVIG  143 (251)
Q Consensus        71 H~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~----~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~  143 (251)
                      |||||                                 |+||++    +.++.++|+|||+++.......   ......+
T Consensus       131 H~Dlk---------------------------------p~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~  177 (317)
T cd07867         131 HRDLK---------------------------------PANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVV  177 (317)
T ss_pred             cCCCC---------------------------------HHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCccee
Confidence            99999                                 666665    3456899999999976543211   1223457


Q ss_pred             cccccccccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh------------hhhcCCCCC----------CC
Q psy3253         144 TPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA------------IFMIPTKPP----------PS  200 (251)
Q Consensus       144 ~~~y~aPE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~------------~~~~~~~~~----------~~  200 (251)
                      |+.|+|||.+.+ ..++.++||||+||++|+|++|.+||........            .........          +.
T Consensus       178 t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (317)
T cd07867         178 TFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPE  257 (317)
T ss_pred             cccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhccc
Confidence            889999999876 4578999999999999999999999954321100            000000000          00


Q ss_pred             ----------------------CCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         201 ----------------------FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       201 ----------------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                                            .......+..+.+++.+||+.||++|||++|+|+||||
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         258 YPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             chhhhhhhcccccCCchhhhhhhcccCCCChHHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence                                  00011235678899999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=100.00  E-value=2.5e-37  Score=258.03  Aligned_cols=205  Identities=58%  Similarity=1.040  Sum_probs=173.1

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++..+...++||||+.+++|.+++.  ...+++..+..++.|++.|+.+||+.|++|+|||      
T Consensus        57 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~i~--~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~------  128 (277)
T cd06641          57 SQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE--PGPLDETQIATILREILKGLDYLHSEKKIHRDIK------  128 (277)
T ss_pred             HhcCCCCEeEEEEEEEeCCeEEEEEEeCCCCcHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHccCCeecCCCC------
Confidence            57899999999999999999999999999999999986  4578999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++++|||++..............++..|+|||.+.+..++.+
T Consensus       129 ---------------------------p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~  181 (277)
T cd06641         129 ---------------------------AANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSK  181 (277)
T ss_pred             ---------------------------HHhEEECCCCCEEEeecccceecccchhhhccccCCccccChhhhccCCCCch
Confidence                                       88999988999999999998655433222333456788999999988888999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +|+||+||++|++++|..||...........+.....+.  ....++.++.+++.+||+.+|++||+++++++||||.+.
T Consensus       182 ~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~~~~  259 (277)
T cd06641         182 ADIWSLGITAIELAKGEPPHSELHPMKVLFLIPKNNPPT--LEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFIVRF  259 (277)
T ss_pred             hhHHHHHHHHHHHHcCCCCCCccchHHHHHHHhcCCCCC--CCcccCHHHHHHHHHHccCChhhCcCHHHHHhCHHHhhh
Confidence            999999999999999999997665544444433332222  245578999999999999999999999999999999875


Q ss_pred             cC
Q psy3253         242 DT  243 (251)
Q Consensus       242 ~~  243 (251)
                      ..
T Consensus       260 ~~  261 (277)
T cd06641         260 AK  261 (277)
T ss_pred             hh
Confidence            43

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=100.00  E-value=2.5e-37  Score=255.39  Aligned_cols=205  Identities=45%  Similarity=0.803  Sum_probs=172.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni~   80 (251)
                      ++++||||+++++++..+...+++|||+.+++|.+++.. ...+++..+..++.|++.|+.|||+ .|++||||+     
T Consensus        54 ~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~-----  127 (264)
T cd06623          54 RSCESPYVVKCYGAFYKEGEISIVLEYMDGGSLADLLKK-VGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIK-----  127 (264)
T ss_pred             HhcCCCCeeeEEEEEccCCeEEEEEEecCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCC-----
Confidence            467899999999999999999999999999999999973 4789999999999999999999999 999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||.+..............++..|+|||.+....++.
T Consensus       128 ----------------------------~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~  179 (264)
T cd06623         128 ----------------------------PSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSY  179 (264)
T ss_pred             ----------------------------HHHEEECCCCCEEEccCccceecccCCCcccceeecccccCHhhhCCCCCCc
Confidence                                        8889998999999999999976654333333445778899999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCC---cchhhhhcCCCCCCCCCCCCC-CCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKPPPSFREPDV-WTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      ++|+||||+++|++++|..||...+   .......+.......  .+.. ++..+.+++.+||..+|++|||++|+++||
T Consensus       180 ~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~~  257 (264)
T cd06623         180 AADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAICDGPPPS--LPAEEFSPEFRDFISACLQKDPKKRPSAAELLQHP  257 (264)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHhcCCCCC--CCcccCCHHHHHHHHHHccCChhhCCCHHHHHhCH
Confidence            9999999999999999999997664   222233333322222  2334 789999999999999999999999999999


Q ss_pred             hhhhcc
Q psy3253         237 FIQRHD  242 (251)
Q Consensus       237 ~~~~~~  242 (251)
                      ||+..+
T Consensus       258 ~~~~~~  263 (264)
T cd06623         258 FIKKAD  263 (264)
T ss_pred             HHHhcc
Confidence            998765

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=100.00  E-value=2.4e-37  Score=259.53  Aligned_cols=208  Identities=23%  Similarity=0.397  Sum_probs=169.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------CCCCHHHHHHHHHHHHHHHHHHHhCCccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------KTLSEDEIATILCDTLKGLEYLHLRRKIH   71 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH   71 (251)
                      |+.++||||+++++++......|+||||+.+|+|.++++...         ..++...+..++.|++.||.|||++|++|
T Consensus        63 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H  142 (288)
T cd05061          63 MKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVH  142 (288)
T ss_pred             HHhCCCCCeeeEEEEEcCCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            356899999999999998889999999999999999997432         23466788999999999999999999999


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--cccccccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIGTPFWMA  149 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~a  149 (251)
                      ||||                                 |+||+++.++.++|+|||+++........  .....++..|+|
T Consensus       143 ~dik---------------------------------p~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~  189 (288)
T cd05061         143 RDLA---------------------------------ARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMA  189 (288)
T ss_pred             CCCC---------------------------------hheEEEcCCCcEEECcCCccccccccccccccCCCcccccccC
Confidence            9988                                 88888888899999999998754322111  112234567999


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC
Q psy3253         150 PEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT  228 (251)
Q Consensus       150 PE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  228 (251)
                      ||.+.+..++.++|+||+||++|++++ |..||.+.+.......+......  ..+...++.+.+++.+||+.||++|||
T Consensus       190 pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps  267 (288)
T cd05061         190 PESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYL--DQPDNCPERVTDLMRMCWQFNPKMRPT  267 (288)
T ss_pred             HHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcCCChhHCcC
Confidence            999988889999999999999999998 78899776655544443333222  224556899999999999999999999


Q ss_pred             HHHHhc------ChhhhhccC
Q psy3253         229 ASEMLN------HEFIQRHDT  243 (251)
Q Consensus       229 ~~evl~------hp~~~~~~~  243 (251)
                      +.++++      ||||+..+|
T Consensus       268 ~~~ll~~l~~~~~~~~~~~~~  288 (288)
T cd05061         268 FLEIVNLLKDDLHPSFPEVSF  288 (288)
T ss_pred             HHHHHHHHHhhcCCCCCCCCC
Confidence            999987      999998887

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=100.00  E-value=1.9e-37  Score=257.10  Aligned_cols=203  Identities=38%  Similarity=0.660  Sum_probs=165.3

Q ss_pred             CCCCCCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++.+  ....++++||+.+++|.+++. ....+++...+.++.|++.||.|||++|++|||||   
T Consensus        58 l~~l~h~~i~~~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~-~~~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~---  133 (266)
T cd06651          58 LKNLQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLK-AYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIK---  133 (266)
T ss_pred             HHHcCCCCeeeEEEEEEcCCCCEEEEEEeCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC---
Confidence            357899999999998875  357899999999999999987 44568999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---ccccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~  155 (251)
                                                    |+||+++.++.++|+|||++........   ......++..|+|||.+.+
T Consensus       134 ------------------------------p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  183 (266)
T cd06651         134 ------------------------------GANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISG  183 (266)
T ss_pred             ------------------------------HHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHhCC
Confidence                                          8888888889999999999865432111   1112346778999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ..++.++|+||+||++|++++|+.||...+............ .....+..+++.+.+++ +||..+|++||+++|+++|
T Consensus       184 ~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~h  261 (266)
T cd06651         184 EGYGRKADVWSLGCTVVEMLTEKPPWAEYEAMAAIFKIATQP-TNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLRH  261 (266)
T ss_pred             CCCCchhhhHHHHHHHHHHHHCCCCccccchHHHHHHHhcCC-CCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhcC
Confidence            889999999999999999999999997765554444332221 12223455788899999 6777899999999999999


Q ss_pred             hhhh
Q psy3253         236 EFIQ  239 (251)
Q Consensus       236 p~~~  239 (251)
                      |||+
T Consensus       262 p~~~  265 (266)
T cd06651         262 PFAQ  265 (266)
T ss_pred             cccc
Confidence            9997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>KOG0596|consensus

Probab=100.00  E-value=5e-38  Score=270.13  Aligned_cols=206  Identities=26%  Similarity=0.481  Sum_probs=160.9

Q ss_pred             CC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           3 QC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +| .|.+||+++++-..++.+||||||-+. +|...+++.......-.++.+..|++.|+++.|+.||||.|||      
T Consensus       415 KLkg~~~IIqL~DYEv~d~~lYmvmE~Gd~-DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLK------  487 (677)
T KOG0596|consen  415 KLKGHDKIIQLYDYEVTDGYLYMVMECGDI-DLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLK------  487 (677)
T ss_pred             HhcCCceEEEEeeeeccCceEEEEeecccc-cHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhceeecCCC------
Confidence            44 589999999999999999999999865 9999998766666656899999999999999999999999998      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccC---
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEI---  156 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~---  156 (251)
                                                 |.|+++- .|.+||+|||+|..+....+  ......||+.|||||.+...   
T Consensus       488 ---------------------------PANFLlV-kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~  539 (677)
T KOG0596|consen  488 ---------------------------PANFLLV-KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSS  539 (677)
T ss_pred             ---------------------------cccEEEE-eeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhcccc
Confidence                                       6666554 36699999999987654432  24456799999999999422   


Q ss_pred             --------CCCcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhcCCCCCCCCCCCCCCC-HHHHHHHHHhhhcCcCcc
Q psy3253         157 --------GYDCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFMIPTKPPPSFREPDVWT-PEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       157 --------~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~l~~~p~~R  226 (251)
                              +.++++||||+||++|+|+.|++||+..... ..+..+.. +.-..+.+..-+ .++.++++.||.+||++|
T Consensus       540 ~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~-P~~~Iefp~~~~~~~li~~mK~CL~rdPkkR  618 (677)
T KOG0596|consen  540 RENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITD-PNHEIEFPDIPENDELIDVMKCCLARDPKKR  618 (677)
T ss_pred             ccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcC-CCccccccCCCCchHHHHHHHHHHhcCcccC
Confidence                    2667899999999999999999999765432 22222222 211112222222 339999999999999999


Q ss_pred             CCHHHHhcChhhhhccCC
Q psy3253         227 ATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       227 ps~~evl~hp~~~~~~~~  244 (251)
                      ||+.|+|+|||.+...-.
T Consensus       619 ~si~eLLqhpFl~~~~i~  636 (677)
T KOG0596|consen  619 WSIPELLQHPFLQIQPIP  636 (677)
T ss_pred             CCcHHHhcCccccccccc
Confidence            999999999999875443

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=100.00  E-value=2.5e-37  Score=258.43  Aligned_cols=200  Identities=22%  Similarity=0.387  Sum_probs=166.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHH
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLH   65 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH   65 (251)
                      |++++||||+++++++.+....+++|||+++++|.+++....               ..+++..++.++.|++.||.|||
T Consensus        62 l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH  141 (283)
T cd05048          62 MSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLS  141 (283)
T ss_pred             HHhcCCcccceEEEEEcCCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            356899999999999998889999999999999999996431               45788999999999999999999


Q ss_pred             hCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--cccccccc
Q psy3253          66 LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIG  143 (251)
Q Consensus        66 ~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~  143 (251)
                      +.|++|||||                                 |+||+++.++.++|+|||++.......  .......+
T Consensus       142 ~~~i~H~dlk---------------------------------p~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~  188 (283)
T cd05048         142 SHHFVHRDLA---------------------------------ARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLL  188 (283)
T ss_pred             hCCeeccccc---------------------------------cceEEEcCCCcEEECCCcceeeccccccccccCCCcc
Confidence            9999999988                                 888899888999999999987543221  11223345


Q ss_pred             ccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcC
Q psy3253         144 TPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN  222 (251)
Q Consensus       144 ~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  222 (251)
                      ++.|+|||.+.+..++.++|+|||||++|++++ |..||.+.........+......  ..+..+++++.+++.+||+.|
T Consensus       189 ~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~l~~~c~~~~  266 (283)
T cd05048         189 PVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIEMIRSRQLL--PCPEDCPARVYALMIECWNEI  266 (283)
T ss_pred             cccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcC--CCcccCCHHHHHHHHHHccCC
Confidence            678999999988889999999999999999998 99999877666655554443322  235678999999999999999


Q ss_pred             cCccCCHHHHhcC
Q psy3253         223 PEERATASEMLNH  235 (251)
Q Consensus       223 p~~Rps~~evl~h  235 (251)
                      |.+||+++|++++
T Consensus       267 p~~Rp~~~~i~~~  279 (283)
T cd05048         267 PARRPRFKDIHTR  279 (283)
T ss_pred             hhhCcCHHHHHHH
Confidence            9999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=100.00  E-value=4e-37  Score=253.75  Aligned_cols=199  Identities=28%  Similarity=0.472  Sum_probs=166.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++......+++|||+.+|+|.+++......+++..++.++.|++.||.|||++|++|||||     
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~-----  127 (256)
T cd05114          53 MMKLSHPKLVQLYGVCTQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLA-----  127 (256)
T ss_pred             HHHCCCCCceeEEEEEccCCCEEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccC-----
Confidence            457899999999999999999999999999999999997555678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc-cccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR-NTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++++|||.+.......... ....++..|+|||.+.+..++
T Consensus       128 ----------------------------p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  179 (256)
T cd05114         128 ----------------------------ARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYS  179 (256)
T ss_pred             ----------------------------cceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChhhcccCccc
Confidence                                        888888888999999999987543322111 122244579999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .++|+||+|+++|++++ |+.||...+.......+......  ..+...+.++.+++.+||..+|++|||++|+++
T Consensus       180 ~~~Di~s~G~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~  253 (256)
T cd05114         180 SKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEMISRGFRL--YRPKLASMTVYEVMYSCWHEKPEGRPTFAELLR  253 (256)
T ss_pred             hhhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence            99999999999999999 89999777665555554443322  234557889999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG0194|consensus

Probab=100.00  E-value=2.1e-38  Score=275.54  Aligned_cols=199  Identities=32%  Similarity=0.522  Sum_probs=171.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++||+......+++|||+|.||+|.++++.....++..+...++.+.+.||+|||++++|||||-     
T Consensus       215 Mr~l~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIA-----  289 (474)
T KOG0194|consen  215 MRQLNHPNVVRFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIA-----  289 (474)
T ss_pred             HHhCCCCCEEEEEEEEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHh-----
Confidence            568999999999999999999999999999999999999776679999999999999999999999999999966     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  .+|++++.++.+||+|||+++.............-+..|+|||.+....++.
T Consensus       290 ----------------------------ARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~  341 (474)
T KOG0194|consen  290 ----------------------------ARNCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSF  341 (474)
T ss_pred             ----------------------------HHHheecCCCeEEeCccccccCCcceeeccccccCcceecChhhhccCcccc
Confidence                                        7788888888899999999976542222222333467899999999999999


Q ss_pred             chhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhc-CCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         161 VADMWSLGITALEMAE-GKPPYGDIHPMRAIFMI-PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++|||||||++||+++ |..||.+.........+ ..+.+  ...+...+.++..++.+||..+|++|||+.++.+
T Consensus       342 kTDV~sfGV~~~Eif~~g~~Py~g~~~~~v~~kI~~~~~r--~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~  415 (474)
T KOG0194|consen  342 KTDVWSFGVLLWEIFENGAEPYPGMKNYEVKAKIVKNGYR--MPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKK  415 (474)
T ss_pred             ccchhheeeeEEeeeccCCCCCCCCCHHHHHHHHHhcCcc--CCCCCCCHHHHHHHHHHhccCChhhccCHHHHHH
Confidence            9999999999999998 88899988887777666 33332  2345677899999999999999999999999864

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=1.4e-37  Score=277.87  Aligned_cols=220  Identities=19%  Similarity=0.312  Sum_probs=160.0

Q ss_pred             CCCCccceeeeeEeeC-CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCCCc
Q psy3253           4 CDSPYVVKYYGSYFKN-TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSGTL   81 (251)
Q Consensus         4 l~hpniv~l~~~~~~~-~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni~~   81 (251)
                      .+|+++++++++|..+ .+.|+|||++ +++|.+++. ..+.+++..+..++.||+.||.|||+ .||+||||||+|||+
T Consensus       188 ~~~~~i~~i~~~~~~~~~~~~iv~~~~-g~~l~~~l~-~~~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl  265 (467)
T PTZ00284        188 ADRFPLMKIQRYFQNETGHMCIVMPKY-GPCLLDWIM-KHGPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILM  265 (467)
T ss_pred             ccCcceeeeEEEEEcCCceEEEEEecc-CCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEE
Confidence            3567799999988764 5799999999 778998886 45689999999999999999999998 599999999888888


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                      ..........                 ....+-...+.+||+|||.+.....   ......+|+.|+|||++.+..++.+
T Consensus       266 ~~~~~~~~~~-----------------~~~~~~~~~~~vkl~DfG~~~~~~~---~~~~~~gt~~Y~APE~~~~~~~~~~  325 (467)
T PTZ00284        266 ETSDTVVDPV-----------------TNRALPPDPCRVRICDLGGCCDERH---SRTAIVSTRHYRSPEVVLGLGWMYS  325 (467)
T ss_pred             ecCCcccccc-----------------cccccCCCCceEEECCCCccccCcc---ccccccCCccccCcHHhhcCCCCcH
Confidence            6322100000                 0001112234699999998854322   2234568999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---CCCCC-----------------------CCCC-------------
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---PTKPP-----------------------PSFR-------------  202 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---~~~~~-----------------------~~~~-------------  202 (251)
                      +|||||||++|+|++|++||.+.+.......+   ....+                       +...             
T Consensus       326 ~DiwSlGvil~elltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (467)
T PTZ00284        326 TDMWSMGCIIYELYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPV  405 (467)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccch
Confidence            99999999999999999999765543322111   00000                       0000             


Q ss_pred             CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         203 EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       203 ~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      .....++.+.+||.+||++||++|||++|+|+||||++...+.
T Consensus       406 ~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~Hp~~~~~~~~~  448 (467)
T PTZ00284        406 REVIRDDLLCDLIYGLLHYDRQKRLNARQMTTHPYVLKYYPEC  448 (467)
T ss_pred             hhhhchHHHHHHHHHhCCcChhhCCCHHHHhcCccccccCCcc
Confidence            0001145678999999999999999999999999999865443

>KOG4279|consensus

Probab=100.00  E-value=1.1e-38  Score=280.26  Aligned_cols=211  Identities=33%  Similarity=0.556  Sum_probs=178.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL--SEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l--~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      ++|.|.|||++.|.+-+++++-+.||-+.||||+.+++..=+++  .+.++-.+.+||++||+|||++.|+|||||    
T Consensus       627 ~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIK----  702 (1226)
T KOG4279|consen  627 STLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIK----  702 (1226)
T ss_pred             HHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeecccc----
Confidence            36899999999999999999999999999999999998666777  788999999999999999999999999999    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecC-CCCCeEecccccccccCccccccccccccccccccccccc--C
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE--I  156 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~-~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--~  156 (251)
                                                   -+|++++ ..|.+||+|||-++..........++.||..|||||++..  .
T Consensus       703 -----------------------------GDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~R  753 (1226)
T KOG4279|consen  703 -----------------------------GDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPR  753 (1226)
T ss_pred             -----------------------------CCcEEEeeccceEEecccccchhhccCCccccccccchhhhChHhhccCCc
Confidence                                         7888884 6788999999999887766566677889999999999965  4


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         157 GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       157 ~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      .|..++|||||||++.||.||++||..........-...-.....+.|..++.++++||.+|+.+||.+||+++++|.+|
T Consensus       754 GYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmyKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~Dp  833 (1226)
T KOG4279|consen  754 GYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQDP  833 (1226)
T ss_pred             CCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhcceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhccCc
Confidence            58899999999999999999999996654443332111111223345677889999999999999999999999999999


Q ss_pred             hhhhccCCC
Q psy3253         237 FIQRHDTDP  245 (251)
Q Consensus       237 ~~~~~~~~~  245 (251)
                      |++..+..+
T Consensus       834 Flq~~~kk~  842 (1226)
T KOG4279|consen  834 FLQHNNKKP  842 (1226)
T ss_pred             ccccCCCCC
Confidence            998774433

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=1.9e-37  Score=259.64  Aligned_cols=207  Identities=35%  Similarity=0.646  Sum_probs=168.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR--KKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAG   77 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~--~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~   77 (251)
                      |++++||||+++++++......++||||+.+++|..++...  ...+++..+..++.|++.||.|||+ .|++|+|||  
T Consensus        53 l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~--  130 (286)
T cd06622          53 LHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVK--  130 (286)
T ss_pred             HHhcCCCcHHhhhhheecCCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCC--
Confidence            35689999999999999999999999999999999998743  2478999999999999999999997 599999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccC-
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-  156 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  156 (251)
                                                     |+||+++.++.++|+|||.+......  ......++..|+|||.+.+. 
T Consensus       131 -------------------------------p~nil~~~~~~~~l~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~  177 (286)
T cd06622         131 -------------------------------PTNVLVNGNGQVKLCDFGVSGNLVAS--LAKTNIGCQSYMAPERIKSGG  177 (286)
T ss_pred             -------------------------------HHHEEECCCCCEEEeecCCcccccCC--ccccCCCccCccCcchhcCCC
Confidence                                           88889888899999999998654322  12223467789999998543 


Q ss_pred             -----CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhh---hcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC
Q psy3253         157 -----GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIF---MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT  228 (251)
Q Consensus       157 -----~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  228 (251)
                           .++.++|+||+||++|++++|..||..........   .+......  ..+..+++++.++|.+||..+|++||+
T Consensus       178 ~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rp~  255 (286)
T cd06622         178 PNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGDPP--TLPSGYSDDAQDFVAKCLNKIPNRRPT  255 (286)
T ss_pred             CCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhhHHHHHHHHhhcCCC--CCCcccCHHHHHHHHHHcccCcccCCC
Confidence                 35789999999999999999999996544333222   12222222  234558999999999999999999999


Q ss_pred             HHHHhcChhhhhccCC
Q psy3253         229 ASEMLNHEFIQRHDTD  244 (251)
Q Consensus       229 ~~evl~hp~~~~~~~~  244 (251)
                      ++++++||||......
T Consensus       256 ~~~l~~~~~~~~~~~~  271 (286)
T cd06622         256 YAQLLEHPWLVKYKNA  271 (286)
T ss_pred             HHHHhcChhhhhccCC
Confidence            9999999999876544

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=100.00  E-value=2.7e-37  Score=254.49  Aligned_cols=199  Identities=30%  Similarity=0.548  Sum_probs=167.8

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      ++++||||+++++++..+...|++|||+++++|.+++... ...+++..++.++.|++.||.+||++|++|+|||     
T Consensus        53 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~-----  127 (255)
T cd08219          53 AKMKHPNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIK-----  127 (255)
T ss_pred             HhCCCCCcceEEEEEEECCEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC-----
Confidence            5689999999999999999999999999999999988643 3568999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++++|||.+..............++..|+|||++.+..++.
T Consensus       128 ----------------------------p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  179 (255)
T cd08219         128 ----------------------------SKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNN  179 (255)
T ss_pred             ----------------------------cceEEECCCCcEEEcccCcceeecccccccccccCCccccCHHHHccCCcCc
Confidence                                        8888888889999999999876543333333455788899999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++|+||+|+++|+|++|..||...+.......+.......  .+..++..+.+++.+||+.||++|||++|+++-
T Consensus       180 ~~Dv~slG~i~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         180 KSDIWSLGCILYELCTLKHPFQANSWKNLILKVCQGSYKP--LPSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             hhhhhhhchhheehhhccCCCCCCCHHHHHHHHhcCCCCC--CCcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence            9999999999999999999998766554444443332222  245678999999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-37  Score=258.98  Aligned_cols=204  Identities=26%  Similarity=0.436  Sum_probs=160.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++||||+.+ +|.+++......+++..++.++.|++.||.|||++|++|||||     
T Consensus        57 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~-----  130 (291)
T cd07844          57 LKDLKHANIVTLHDIIHTKKTLTLVFEYLDT-DLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLK-----  130 (291)
T ss_pred             HhhCCCcceeeEEEEEecCCeEEEEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCC-----
Confidence            4578999999999999999999999999974 9999987656688999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.++|+|||.+..............++..|+|||.+.+ ..++
T Consensus       131 ----------------------------p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  182 (291)
T cd07844         131 ----------------------------PQNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYS  182 (291)
T ss_pred             ----------------------------HHHEEEcCCCCEEECccccccccCCCCccccccccccccCCcHHhhcCcccC
Confidence                                        88999998999999999998654322222222345778999999865 5578


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCc-chhhh---hcCCCCC---------------CCC---------CCCCCCC--H
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHP-MRAIF---MIPTKPP---------------PSF---------REPDVWT--P  209 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~-~~~~~---~~~~~~~---------------~~~---------~~~~~~~--~  209 (251)
                      .++|+||+|+++|+|++|..||.+... .....   .......               ...         .....++  .
T Consensus       183 ~~~Dv~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (291)
T cd07844         183 TSLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRIP  262 (291)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCCCCch
Confidence            899999999999999999999965441 11110   0000000               000         0011233  7


Q ss_pred             HHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         210 EFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       210 ~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .+.+++.+||..+|++|||++|+++||||
T Consensus       263 ~~~~li~~~L~~~p~~Rps~~e~l~~~~f  291 (291)
T cd07844         263 HGEELALKFLQYEPKKRISAAEAMKHPYF  291 (291)
T ss_pred             hHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            88999999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=100.00  E-value=3.7e-37  Score=254.14  Aligned_cols=203  Identities=31%  Similarity=0.567  Sum_probs=170.6

Q ss_pred             CCCCCCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHH-----hCCcc
Q psy3253           1 MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLH-----LRRKI   70 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH-----~~~ii   70 (251)
                      |++++||||+++++.+..  +...+++|||+.+++|.+++...   ...+++..++.++.|++.||.|||     +.+++
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~  132 (265)
T cd08217          53 LRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVL  132 (265)
T ss_pred             HHhcCCCccceeeeeeecCCCCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcce
Confidence            357899999999997753  45689999999999999999643   467899999999999999999999     89999


Q ss_pred             ccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccc
Q psy3253          71 HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAP  150 (251)
Q Consensus        71 H~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  150 (251)
                      |+|||                                 |+||+++.++.++++|||++..............++..|+||
T Consensus       133 h~dl~---------------------------------p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~p  179 (265)
T cd08217         133 HRDLK---------------------------------PANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSP  179 (265)
T ss_pred             ecCCC---------------------------------HHHEEEecCCCEEEecccccccccCCcccccccccCCCccCh
Confidence            99988                                 888999889999999999997665443323345678899999


Q ss_pred             cccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         151 EVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       151 E~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      |.+.+..++.++|+||||+++|++++|..||...+.......+......  ..+..++..+.+++.+||+.+|++|||++
T Consensus       180 E~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~  257 (265)
T cd08217         180 EQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQLQLASKIKEGKFR--RIPYRYSSELNEVIKSMLNVDPDKRPSTE  257 (265)
T ss_pred             hhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHHHHHHHHhcCCCC--CCccccCHHHHHHHHHHccCCcccCCCHH
Confidence            9998888999999999999999999999999776654444444443322  23556789999999999999999999999


Q ss_pred             HHhcChhh
Q psy3253         231 EMLNHEFI  238 (251)
Q Consensus       231 evl~hp~~  238 (251)
                      |+++|||+
T Consensus       258 ~il~~~~~  265 (265)
T cd08217         258 ELLQLPLI  265 (265)
T ss_pred             HHhhCCCC
Confidence            99999995

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=100.00  E-value=2.4e-37  Score=258.62  Aligned_cols=204  Identities=28%  Similarity=0.535  Sum_probs=164.2

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++..+...++|+||+ +++|.+++......+++..++.++.||+.||.|||+.|++|+|||      
T Consensus        54 ~~~~~~~i~~~~~~~~~~~~~~~v~e~~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~------  126 (286)
T cd07832          54 QACQHPYVVKLLDVFPHGSGFVLVMEYM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLK------  126 (286)
T ss_pred             HhCCCCCCcceeeEEecCCeeEEEeccc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcC------
Confidence            5788999999999999999999999999 999999997666789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-ccccccccccccccccccc-CCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                 |+||+++.++.++++|||.+........ ......++..|+|||.+.+ ..++
T Consensus       127 ---------------------------p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  179 (286)
T cd07832         127 ---------------------------PANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYD  179 (286)
T ss_pred             ---------------------------HHHEEEcCCCcEEEeeeeecccccCCCCCccccccCcccccCceeeeccccCC
Confidence                                       8899998899999999999876543321 1233457888999999865 3468


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC---C---------------------CC--C-CCCCCCCCHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK---P---------------------PP--S-FREPDVWTPEFI  212 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~---~---------------------~~--~-~~~~~~~~~~~~  212 (251)
                      .++||||+||++|++++|.++|.+.........+...   .                     ..  . .......+.++.
T Consensus       180 ~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (286)
T cd07832         180 PGVDLWAVGCIFAELLNGSPLFPGENDIEQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEAL  259 (286)
T ss_pred             chhHHHHHHHHHHHHHcCCcCcCCCCHHHHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCCccHHHH
Confidence            8999999999999999998888655433222111000   0                     00  0 001134578899


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhhh
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFIQ  239 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~~  239 (251)
                      +++++||+.+|++|||++++++||||.
T Consensus       260 ~li~~~l~~~p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         260 DLLKGLLVYDPSKRLSAAEALRHPYFT  286 (286)
T ss_pred             HHHHHHhccChhhCCCHHHHhhCcCcC
Confidence            999999999999999999999999984

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=100.00  E-value=2.6e-37  Score=256.14  Aligned_cols=204  Identities=30%  Similarity=0.573  Sum_probs=166.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+.++||||+++++++.+.++.++||||+.+++|.+++. ....+++..+..++.|++.||.|||++|++|+|||     
T Consensus        57 l~~l~h~~iv~~~~~~~~~~~~~~v~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~-----  130 (268)
T cd06630          57 MARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLS-KYGAFKEAVIINYTEQLLRGLSYLHENQIIHRDVK-----  130 (268)
T ss_pred             HHHcCCCceehhhceeccCCeEEEEEeccCCCcHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----
Confidence            356899999999999999999999999999999999997 44678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCC-CeEecccccccccCccccc----cccccccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLADFGVAGQLTDTMAK----RNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~-~~kl~dfg~~~~~~~~~~~----~~~~~~~~~y~aPE~~~~  155 (251)
                                                  |+||+++.++ .++|+|||.+.........    .....++..|+|||.+.+
T Consensus       131 ----------------------------~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~  182 (268)
T cd06630         131 ----------------------------GANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRG  182 (268)
T ss_pred             ----------------------------HHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhHhcc
Confidence                                        7788887665 5899999998765432111    122356778999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhh---hcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIF---MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      ..++.++|+||+|+++|++++|..||..........   ...... .....+..+++++.+++.+||+.+|++|||+.|+
T Consensus       183 ~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~l  261 (268)
T cd06630         183 EQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFKIASAT-TAPSIPEHLSPGLRDVTLRCLELQPEDRPPSREL  261 (268)
T ss_pred             CCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHHHHHHHhccC-CCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHH
Confidence            888999999999999999999999996443222111   111111 1122345678999999999999999999999999


Q ss_pred             hcChhhh
Q psy3253         233 LNHEFIQ  239 (251)
Q Consensus       233 l~hp~~~  239 (251)
                      ++||||+
T Consensus       262 l~~~~~~  268 (268)
T cd06630         262 LKHPVFR  268 (268)
T ss_pred             hcCcccC
Confidence            9999985

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=100.00  E-value=2.4e-37  Score=262.48  Aligned_cols=209  Identities=30%  Similarity=0.565  Sum_probs=163.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.+....+++|||+.+|+|.+++... ...+++..+..++.|++.||.|||++|++|||||    
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk----  128 (314)
T cd08216          53 SRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVK----  128 (314)
T ss_pred             HHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC----
Confidence            35789999999999999999999999999999999999743 3568999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-------cccccccccccccccc
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-------KRNTVIGTPFWMAPEV  152 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-------~~~~~~~~~~y~aPE~  152 (251)
                                                   |+||+++.++.++++|||.+........       ......++..|+|||.
T Consensus       129 -----------------------------~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  179 (314)
T cd08216         129 -----------------------------ASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEV  179 (314)
T ss_pred             -----------------------------cceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHHH
Confidence                                         8888988889999999998864432111       1112235667999999


Q ss_pred             ccc--CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhh-hcCCCCC------------------------------C
Q psy3253         153 IQE--IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIF-MIPTKPP------------------------------P  199 (251)
Q Consensus       153 ~~~--~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~-~~~~~~~------------------------------~  199 (251)
                      +..  ..++.++|+||+||++|++++|..||.......... .+....+                              .
T Consensus       180 ~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (314)
T cd08216         180 LQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSV  259 (314)
T ss_pred             hcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhh
Confidence            865  457889999999999999999999997543322111 1100000                              0


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         200 SFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       200 ~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                      .......++.++.+++.+||.+||++|||++|+++||||+...
T Consensus       260 ~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~p~~~~~~  302 (314)
T cd08216         260 DHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHSFFKQCK  302 (314)
T ss_pred             hcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcCchHhhhc
Confidence            0000122346789999999999999999999999999999775

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=100.00  E-value=1.2e-37  Score=256.92  Aligned_cols=201  Identities=32%  Similarity=0.603  Sum_probs=170.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++|+||+.+++|.+++.. ...+++..+..++.|++.||.|||++|++|+||+     
T Consensus        54 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~-----  127 (258)
T cd05578          54 LQELNHPFLVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQ-KVKFSEEQVKFWICEIVLALEYLHSKGIIHRDIK-----  127 (258)
T ss_pred             HHhCCCCChHHHHHhhcCCCeEEEEEeCCCCCCHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-----
Confidence            3578999999999999999999999999999999999874 3689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||.+....... ......++..|+|||.+.+..++.
T Consensus       128 ----------------------------~~nil~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~y~~PE~~~~~~~~~  178 (258)
T cd05578         128 ----------------------------PDNILLDEQGHVHITDFNIATKVTPDT-LTTSTSGTPGYMAPEVLCRQGYSV  178 (258)
T ss_pred             ----------------------------HHHeEEcCCCCEEEeecccccccCCCc-cccccCCChhhcCHHHHcccCCCC
Confidence                                        889999999999999999987654332 223345778899999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCc--chhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH--HHHhcCh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA--SEMLNHE  236 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~--~evl~hp  236 (251)
                      ++|+||+|+++|++++|..||.....  ..........  .....+..++..+.++|.+||+.||.+||++  +|+++||
T Consensus       179 ~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~~~~  256 (258)
T cd05578         179 AVDWWSLGVTAYECLRGKRPYRGHSRTIRDQIRAKQET--ADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDLKNHP  256 (258)
T ss_pred             cccchhhHHHHHHHHhCCCCCCCCCccHHHHHHHHhcc--ccccCcccCcHHHHHHHHHHccCChhHcCCccHHHHhcCC
Confidence            99999999999999999999976653  1211111111  2233456678999999999999999999999  9999999


Q ss_pred             hh
Q psy3253         237 FI  238 (251)
Q Consensus       237 ~~  238 (251)
                      ||
T Consensus       257 ~~  258 (258)
T cd05578         257 YF  258 (258)
T ss_pred             CC
Confidence            98

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=100.00  E-value=7.5e-38  Score=258.99  Aligned_cols=198  Identities=29%  Similarity=0.556  Sum_probs=161.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      ++++||||++++|++.+....++|+||+.+|+|.+++... ...+++..+..++.||+.||.|||+++++|++|+     
T Consensus        56 ~~l~h~ni~~~~g~~~~~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~-----  130 (259)
T PF07714_consen   56 RKLRHPNIVKLYGFCIENEPLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLS-----  130 (259)
T ss_dssp             HTHSBTTBE-EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-S-----
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----
Confidence            4679999999999999888899999999999999999865 5789999999999999999999999999999987     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc--cccccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT--MAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  ++||+++.++.+||+|||++......  ............|+|||.+.+..+
T Consensus       131 ----------------------------~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~  182 (259)
T PF07714_consen  131 ----------------------------PSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEY  182 (259)
T ss_dssp             ----------------------------GGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEE
T ss_pred             ----------------------------cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                        89999999999999999999765221  112233345667999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++||||||+++|++++ |..||.+.+.......+.....  ...+..++..+.+++.+||..+|++|||++|+++
T Consensus       183 ~~ksDVysfG~~l~ei~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~  257 (259)
T PF07714_consen  183 TKKSDVYSFGMLLYEILTLGKFPFSDYDNEEIIEKLKQGQR--LPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQ  257 (259)
T ss_dssp             SHHHHHHHHHHHHHHHHTTSSGTTTTSCHHHHHHHHHTTEE--TTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc--ceeccchhHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence            999999999999999999 7899988776665555533332  2346678999999999999999999999999974

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=100.00  E-value=5.7e-37  Score=252.41  Aligned_cols=202  Identities=40%  Similarity=0.721  Sum_probs=168.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++++||+++++|.+++. +...+++..+..++.|++.||.|||+.|++|+||+     
T Consensus        56 l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~-----  129 (258)
T cd06632          56 LSKLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLK-KYGSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIK-----  129 (258)
T ss_pred             HHhcCCCCchheeeeEecCCeEEEEEEecCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----
Confidence            356899999999999999999999999999999999997 44578999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC-CC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~  159 (251)
                                                  |+||+++.++.++|+|||.+....... ......++..|+|||.+.... ++
T Consensus       130 ----------------------------~~ni~~~~~~~~kl~d~~~~~~~~~~~-~~~~~~~~~~y~~pe~~~~~~~~~  180 (258)
T cd06632         130 ----------------------------GANILVDTNGVVKLADFGMAKQVVEFS-FAKSFKGSPYWMAPEVIAQQGGYG  180 (258)
T ss_pred             ----------------------------HHHEEECCCCCEEEccCccceeccccc-cccccCCCcceeCHHHhcCCCCCC
Confidence                                        888999889999999999987654332 223345788899999987666 88


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .++|+||+|+++|++++|..||...........+..... ....+..+++.+.+++.+||+.+|++||++++++.|||+
T Consensus       181 ~~~D~~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  258 (258)
T cd06632         181 LAADIWSLGCTVLEMATGKPPWSQLEGVAAVFKIGRSKE-LPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLEHPFV  258 (258)
T ss_pred             chhhhHHHHHHHHHHHhCCCCcccCcHHHHHHHHHhccc-CCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhcCCCC
Confidence            999999999999999999999976654443333322111 112345678999999999999999999999999999996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>KOG0584|consensus

Probab=100.00  E-value=8e-38  Score=272.52  Aligned_cols=202  Identities=30%  Similarity=0.570  Sum_probs=169.3

Q ss_pred             CCCCCCCccceeeeeEeeCCe--EEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR--KIHRDIKA   76 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~--~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~--iiH~dik~   76 (251)
                      |+.|+|||||++|++|.+...  +.+|+|.+.+|+|..|.+ +.+..+.+.++.|++||+.||.|||++.  ||||||| 
T Consensus        95 LKsL~H~NIirfy~SW~d~~n~~in~iTEL~TSGtLr~Y~k-k~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLK-  172 (632)
T KOG0584|consen   95 LKSLKHPNIIRFYDSWVDTDNKTINFITELFTSGTLREYRK-KHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLK-  172 (632)
T ss_pred             HccCCCCceeeeeeheecCCCceeeeeeecccCCcHHHHHH-HhccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccc-
Confidence            678999999999999986544  889999999999999997 6688999999999999999999999986  9999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCC-CCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                      .+||+++. .|.+||+|+|+|........+.  ..|||.|||||... 
T Consensus       173 --------------------------------CDNIFinG~~G~VKIGDLGLAtl~r~s~aks--vIGTPEFMAPEmYE-  217 (632)
T KOG0584|consen  173 --------------------------------CDNIFVNGNLGEVKIGDLGLATLLRKSHAKS--VIGTPEFMAPEMYE-  217 (632)
T ss_pred             --------------------------------cceEEEcCCcCceeecchhHHHHhhccccce--eccCccccChHHHh-
Confidence                                            67777754 4789999999997665443332  67999999999996 


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhh-hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAI-FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ..|...+||||||+++.||+|+..||........+ ..+..+..+. .....-.+++++||.+||.. .+.|+|+.|+|.
T Consensus       218 E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~-sl~kV~dPevr~fIekCl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  218 ENYNELVDVYAFGMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPA-ALSKVKDPEVREFIEKCLAT-KSERLSAKELLK  295 (632)
T ss_pred             hhcchhhhhhhhhHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHH-HhhccCCHHHHHHHHHHhcC-chhccCHHHHhh
Confidence            68999999999999999999999999766554444 4444443322 11233479999999999999 999999999999


Q ss_pred             Chhhhhc
Q psy3253         235 HEFIQRH  241 (251)
Q Consensus       235 hp~~~~~  241 (251)
                      ||||+..
T Consensus       296 d~Ff~~d  302 (632)
T KOG0584|consen  296 DPFFDED  302 (632)
T ss_pred             Chhhccc
Confidence            9999875

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=100.00  E-value=2.1e-37  Score=258.98  Aligned_cols=204  Identities=27%  Similarity=0.442  Sum_probs=161.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.++...++||||+. ++|.+++... ...+++..++.++.|++.||.|||+.|++|+||+    
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~----  127 (284)
T cd07860          53 LKELNHPNIVKLLDVIHTENKLYLVFEFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLK----  127 (284)
T ss_pred             HHhcCCCCCcchhhhcccCCcEEEEeeccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC----
Confidence            357899999999999999999999999995 5899888643 3568999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC-C
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-Y  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~  158 (251)
                                                   |+||+++.++.++|+|||.+..............++..|+|||.+.+.. +
T Consensus       128 -----------------------------p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  178 (284)
T cd07860         128 -----------------------------PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY  178 (284)
T ss_pred             -----------------------------HHHEEECCCCCEEEeeccchhhcccCccccccccccccccCCeEEecCCCC
Confidence                                         8899999999999999999875543322223334577899999886544 5


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CC----------------------C-CCCCCCCCCCHHHH
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KP----------------------P-PSFREPDVWTPEFI  212 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~----------------------~-~~~~~~~~~~~~~~  212 (251)
                      +.++|+||||+++|++++|..||...+.......+..   ..                      . ........+++++.
T Consensus       179 ~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (284)
T cd07860         179 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGR  258 (284)
T ss_pred             CcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCCHHHH
Confidence            8889999999999999999999965443222111100   00                      0 00001234678899


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      ++|.+||+.||++|||++|+++||||
T Consensus       259 ~li~~~l~~~P~~Rpt~~~~l~~~~f  284 (284)
T cd07860         259 DLLSQMLHYDPNKRISAKAALAHPFF  284 (284)
T ss_pred             HHHHHhcCCCcccCCCHHHHhcCCCC
Confidence            99999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=100.00  E-value=8.7e-37  Score=252.28  Aligned_cols=204  Identities=38%  Similarity=0.693  Sum_probs=167.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+.++||||+++++++.+....++|+||+.+++|.+++. ....+++..+..++.+++.||.|||+.|++|+||+     
T Consensus        53 ~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~-----  126 (264)
T cd06626          53 LELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLE-HGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIK-----  126 (264)
T ss_pred             HHhCCCCChhheeeeEecCCEEEEEEecCCCCcHHHHHh-hcCCCChHHHHHHHHHHHHHHHHHHHCCcccCCCC-----
Confidence            357899999999999999999999999999999999987 44568999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccc----ccccccccccccccccC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN----TVIGTPFWMAPEVIQEI  156 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~----~~~~~~~y~aPE~~~~~  156 (251)
                                                  |+||+++.++.++|+|||.+...........    ...++..|+|||.+.+.
T Consensus       127 ----------------------------~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~  178 (264)
T cd06626         127 ----------------------------PANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGG  178 (264)
T ss_pred             ----------------------------HHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCC
Confidence                                        8889998899999999999876543322211    23467789999999776


Q ss_pred             C---CCcchhHHHHHHHHHHHHhCCCCCCCCCc-chhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         157 G---YDCVADMWSLGITALEMAEGKPPYGDIHP-MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       157 ~---~~~~~DvwslG~~l~~l~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      .   .+.++||||+|+++|++++|..||...+. ......+.....+..+....++..+.+++.+||+.+|++|||++|+
T Consensus       179 ~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i  258 (264)
T cd06626         179 KGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQIMFHVGAGHKPPIPDSLQLSPEGKDFLDRCLESDPKKRPTASEL  258 (264)
T ss_pred             CCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHHHHHHhcCCCCCCCcccccCHHHHHHHHHHccCCcccCCCHHHH
Confidence            5   78899999999999999999999965532 2222223333333333334458999999999999999999999999


Q ss_pred             hcChhh
Q psy3253         233 LNHEFI  238 (251)
Q Consensus       233 l~hp~~  238 (251)
                      +.|||+
T Consensus       259 ~~~~~~  264 (264)
T cd06626         259 LQHPFV  264 (264)
T ss_pred             hcCCCC
Confidence            999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=100.00  E-value=7e-37  Score=250.22  Aligned_cols=203  Identities=56%  Similarity=1.072  Sum_probs=171.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...++++||+.+++|.+++......+++..+..++.|++.||.+||+.|++||||+     
T Consensus        51 l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~-----  125 (253)
T cd05122          51 LKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIK-----  125 (253)
T ss_pred             HHhCCCCCEeEEEEEEecCCeEEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCC-----
Confidence            357889999999999999999999999999999999997554689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||.+........ .....++..|+|||.+.+..++.
T Consensus       126 ----------------------------p~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~~PE~~~~~~~~~  176 (253)
T cd05122         126 ----------------------------AANILLTSDGEVKLIDFGLSAQLSDTKA-RNTMVGTPYWMAPEVINGKPYDY  176 (253)
T ss_pred             ----------------------------HHHEEEccCCeEEEeecccccccccccc-ccceecCCcccCHHHHcCCCCCc
Confidence                                        8888998899999999999876554321 23445778899999998888899


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      ++|+||+|+++|++++|..||...+.....................++..+.+++.+||+.||++|||++|+++|||
T Consensus       177 ~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~~~~  253 (253)
T cd05122         177 KADIWSLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLKHPF  253 (253)
T ss_pred             cccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcCCCCcCcccccCHHHHHHHHHHccCChhhCCCHHHHhcCCC
Confidence            99999999999999999999977644444433333333333334445899999999999999999999999999998

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=100.00  E-value=8e-37  Score=252.24  Aligned_cols=200  Identities=24%  Similarity=0.431  Sum_probs=165.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++......+++|||+.+|+|.+++......+++..+..++.|++.||.|||+.|++|+|||     
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~-----  127 (256)
T cd05113          53 MMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLA-----  127 (256)
T ss_pred             HhcCCCCCeeeEEEEEccCCCcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccC-----
Confidence            467899999999999998888999999999999999997555678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-ccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++|+|||.+......... .....++..|+|||.+.+..++
T Consensus       128 ----------------------------p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~  179 (256)
T cd05113         128 ----------------------------ARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFS  179 (256)
T ss_pred             ----------------------------cceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhcCccc
Confidence                                        88888888899999999998654332111 1122345679999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++|+||||+++|++++ |..||...........+......  ..+...+..+.+++.+||+.+|++|||+.+++.+
T Consensus       180 ~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~  254 (256)
T cd05113         180 SKSDVWAFGVLMWEVYSLGKMPYERFNNSETVEKVSQGLRL--YRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSS  254 (256)
T ss_pred             chhHHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHhcCCCC--CCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHh
Confidence            99999999999999998 99999766554444434333222  2245568999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=100.00  E-value=8.6e-37  Score=251.06  Aligned_cols=199  Identities=25%  Similarity=0.428  Sum_probs=162.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++......++||||+.+++|.+++......+++..++.++.|++.||.|||++|++|||||     
T Consensus        47 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~-----  121 (252)
T cd05084          47 LKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLA-----  121 (252)
T ss_pred             HHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccc-----
Confidence            457899999999999999999999999999999999997555678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--ccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.++|+|||.+.........  ......+..|+|||.+.+..+
T Consensus       122 ----------------------------p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  173 (252)
T cd05084         122 ----------------------------ARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRY  173 (252)
T ss_pred             ----------------------------hheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCC
Confidence                                        88888888889999999998653321111  011122346999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|+||+||++|++++ |..||...........+......  ..+..++..+.+++.+||+.+|++|||++|+++
T Consensus       174 ~~~~Dv~slG~il~e~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  248 (252)
T cd05084         174 SSESDVWSFGILLWEAFSLGAVPYANLSNQQTREAIEQGVRL--PCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQ  248 (252)
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCC--CCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            999999999999999997 88999765554433333332222  235567899999999999999999999999974

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=100.00  E-value=4.5e-37  Score=256.76  Aligned_cols=207  Identities=39%  Similarity=0.743  Sum_probs=165.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLHLR-RKIHRDIKAG   77 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH~~-~iiH~dik~~   77 (251)
                      +.++||||+++++++..+...|++|||++ |+|.+++...   ...+++..+..++.|++.||.|||++ +++|||||  
T Consensus        55 ~~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlk--  131 (283)
T cd06617          55 RSVDCPYTVTFYGALFREGDVWICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVK--  131 (283)
T ss_pred             HHcCCCCeeeeeEEEecCCcEEEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCC--
Confidence            45689999999999999999999999996 6898887632   35689999999999999999999997 99999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc--
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE--  155 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--  155 (251)
                                                     |+||+++.++.++|+|||.+....... ......++..|+|||.+.+  
T Consensus       132 -------------------------------p~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~  179 (283)
T cd06617         132 -------------------------------PSNVLINRNGQVKLCDFGISGYLVDSV-AKTIDAGCKPYMAPERINPEL  179 (283)
T ss_pred             -------------------------------HHHEEECCCCCEEEeeccccccccccc-ccccccCCccccChhhcCCcc
Confidence                                           888899889999999999987654321 1222456778999998854  


Q ss_pred             --CCCCcchhHHHHHHHHHHHHhCCCCCCCCCc-chhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         156 --IGYDCVADMWSLGITALEMAEGKPPYGDIHP-MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       156 --~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                        ..++.++|+||+||++|++++|+.||..... ............... ....++.++.+++.+||..+|++||+++++
T Consensus       180 ~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~Rp~~~~i  258 (283)
T cd06617         180 NQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQQLKQVVEEPSPQL-PAEKFSPEFQDFVNKCLKKNYKERPNYPEL  258 (283)
T ss_pred             cccccCccccchhhHHHHHHHHhCCCCCCccccCHHHHHHHHhcCCCCC-CccccCHHHHHHHHHHccCChhhCcCHHHH
Confidence              4568899999999999999999999965332 122222222222222 123478999999999999999999999999


Q ss_pred             hcChhhhhccCC
Q psy3253         233 LNHEFIQRHDTD  244 (251)
Q Consensus       233 l~hp~~~~~~~~  244 (251)
                      ++||||+.....
T Consensus       259 l~~~~~~~~~~~  270 (283)
T cd06617         259 LQHPFFELHLSK  270 (283)
T ss_pred             hcCchhhhcccc
Confidence            999999986644

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=100.00  E-value=8.7e-37  Score=256.20  Aligned_cols=198  Identities=24%  Similarity=0.427  Sum_probs=164.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC------------CCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK------------KTLSEDEIATILCDTLKGLEYLHLRR   68 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~------------~~l~~~~~~~~~~~i~~~l~~LH~~~   68 (251)
                      |++++||||+++++++......+++|||+.+++|.+++....            ..+++..++.++.|++.||.|||++|
T Consensus        61 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~  140 (288)
T cd05093          61 LTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQH  140 (288)
T ss_pred             HHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            357899999999999999999999999999999999996332            24899999999999999999999999


Q ss_pred             ccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccc
Q psy3253          69 KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPF  146 (251)
Q Consensus        69 iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~  146 (251)
                      ++|||||                                 |+||+++.++.++|+|||++........  ......++..
T Consensus       141 i~H~dlk---------------------------------p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~  187 (288)
T cd05093         141 FVHRDLA---------------------------------TRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIR  187 (288)
T ss_pred             eeecccC---------------------------------cceEEEccCCcEEeccCCccccccCCceeecCCCCCcccc
Confidence            9999988                                 8888888899999999999975432211  1222334667


Q ss_pred             cccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCc
Q psy3253         147 WMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEE  225 (251)
Q Consensus       147 y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  225 (251)
                      |+|||.+.+..++.++|+|||||++|+|++ |.+||...........+......  ..+..+++++.+++.+||+.||.+
T Consensus       188 y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~~~~~i~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~  265 (288)
T cd05093         188 WMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVL--QRPRTCPKEVYDLMLGCWQREPHM  265 (288)
T ss_pred             ccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCcC--CCCCCCCHHHHHHHHHHccCChhh
Confidence            999999988889999999999999999998 99999776655544444433222  234567899999999999999999


Q ss_pred             cCCHHHHh
Q psy3253         226 RATASEML  233 (251)
Q Consensus       226 Rps~~evl  233 (251)
                      |||++|++
T Consensus       266 Rpt~~~v~  273 (288)
T cd05093         266 RLNIKEIH  273 (288)
T ss_pred             CCCHHHHH
Confidence            99999996

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG0983|consensus

Probab=100.00  E-value=4.7e-38  Score=250.30  Aligned_cols=208  Identities=35%  Similarity=0.641  Sum_probs=175.5

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCCCc
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSGTL   81 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni~~   81 (251)
                      ..++|+||++||+|..+....+.||.|. .-+..+++.-.++++|..+-.+...++.||.||-+ +||+|||+|      
T Consensus       147 s~dcpyIV~c~GyFi~n~dV~IcMelMs-~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvK------  219 (391)
T KOG0983|consen  147 SHDCPYIVQCFGYFITNTDVFICMELMS-TCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVK------  219 (391)
T ss_pred             ccCCCeeeeeeeEEeeCchHHHHHHHHH-HHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccC------
Confidence            4568999999999999999999999994 46777777667889999999999999999999997 589999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc---cCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---EIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~  158 (251)
                                                 |+||+++..|.+|+||||++....+.... ....|.+.|||||.+.   +..|
T Consensus       220 ---------------------------PSNILlDe~GniKlCDFGIsGrlvdSkAh-trsAGC~~YMaPERidp~~~~kY  271 (391)
T KOG0983|consen  220 ---------------------------PSNILLDERGNIKLCDFGISGRLVDSKAH-TRSAGCAAYMAPERIDPPDKPKY  271 (391)
T ss_pred             ---------------------------ccceEEccCCCEEeecccccceeeccccc-ccccCCccccCccccCCCCCCcc
Confidence                                       89999999999999999999776554333 2334677899999994   4568


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +..+||||||+.+++|.||+.||.+.+.. +....+....++.+..-..+++.+.+|+..||+.|+.+||...++|+|||
T Consensus       272 DiRaDVWSlGITlveLaTg~yPy~~c~tdFe~ltkvln~ePP~L~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h~F  351 (391)
T KOG0983|consen  272 DIRADVWSLGITLVELATGQYPYKGCKTDFEVLTKVLNEEPPLLPGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLLEHPF  351 (391)
T ss_pred             chhhhhhhhccchhhhhcccCCCCCCCccHHHHHHHHhcCCCCCCcccCcCHHHHHHHHHHhhcCcccCcchHHHhcCcc
Confidence            88999999999999999999999775443 34445555666666666669999999999999999999999999999999


Q ss_pred             hhhccCCC
Q psy3253         238 IQRHDTDP  245 (251)
Q Consensus       238 ~~~~~~~~  245 (251)
                      +..++...
T Consensus       352 i~~ye~a~  359 (391)
T KOG0983|consen  352 IKRYETAE  359 (391)
T ss_pred             eeecchhh
Confidence            98876543

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=100.00  E-value=1e-36  Score=253.28  Aligned_cols=204  Identities=34%  Similarity=0.621  Sum_probs=166.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||++++++++......++||||+.+++|.++++. ...+++..++.++.|++.||.|||++|++|||||     
T Consensus        62 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----  135 (272)
T cd06629          62 LKDLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRT-YGRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLK-----  135 (272)
T ss_pred             HHhcCCCCcceEEEEeccCCceEEEEecCCCCcHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCC-----
Confidence            4578999999999999999999999999999999999974 4679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--ccccccccccccccccccccCC-
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPEVIQEIG-  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~-  157 (251)
                                                  |+||+++.++.++++|||.+.......  .......++..|+|||.+.... 
T Consensus       136 ----------------------------~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  187 (272)
T cd06629         136 ----------------------------ADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQ  187 (272)
T ss_pred             ----------------------------hhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhccccC
Confidence                                        888888889999999999987543211  1122234677899999987654 


Q ss_pred             -CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-C--CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         158 -YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-P--PSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       158 -~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                       ++.++|+||+|+++|++++|..||...........+.... .  ........++..+.+++.+||..+|++|||++|++
T Consensus       188 ~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il  267 (272)
T cd06629         188 GYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARELL  267 (272)
T ss_pred             CCCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHHh
Confidence             7889999999999999999999997655443332222111 1  11112235689999999999999999999999999


Q ss_pred             cChhh
Q psy3253         234 NHEFI  238 (251)
Q Consensus       234 ~hp~~  238 (251)
                      +||||
T Consensus       268 ~~~~~  272 (272)
T cd06629         268 QHPFI  272 (272)
T ss_pred             hCCCC
Confidence            99997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=100.00  E-value=8.5e-37  Score=250.84  Aligned_cols=202  Identities=34%  Similarity=0.630  Sum_probs=173.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      ++++|||++++.+.+..+...++++||+++++|.+++...   ...+++..+..++.+++.||.+||+.|++|+||+   
T Consensus        54 ~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~---  130 (258)
T cd08215          54 KKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIK---  130 (258)
T ss_pred             HhcCCCChhheEEEEecCCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCC---
Confidence            5678999999999999999999999999999999999754   3789999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                    |+||+++.++.++|+|||.+..............+++.|+|||...+..+
T Consensus       131 ------------------------------~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~  180 (258)
T cd08215         131 ------------------------------PQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPY  180 (258)
T ss_pred             ------------------------------hHHeEEcCCCcEEECCccceeecccCcceecceeeeecccChhHhccCCC
Confidence                                          88888888899999999999766544323344567888999999988889


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +.++|+||+|++++++++|..||...+...............  .+..++.++.+++.+||..+|++|||++|+++||||
T Consensus       181 ~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  258 (258)
T cd08215         181 NYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQYPP--IPSQYSSELRNLVSSLLQKDPEERPSIAQILQSPFI  258 (258)
T ss_pred             CccccHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHhcCCCCC--CCCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCCCC
Confidence            999999999999999999999997766555554444333222  244678999999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=100.00  E-value=5.7e-37  Score=252.42  Aligned_cols=203  Identities=31%  Similarity=0.578  Sum_probs=168.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      +++++||||+++++.+......++++||+.+++|.+++.... ..+++..++.++.|++.||.|||+.+++|+|||    
T Consensus        53 l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~----  128 (257)
T cd08225          53 LAKMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIK----  128 (257)
T ss_pred             HHhCCCCChhhhhheeccCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCC----
Confidence            356899999999999999999999999999999999986433 358999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCC-eEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH-AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~-~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++. ++++|||.+..............++..|+|||.+.+..+
T Consensus       129 -----------------------------~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~  179 (257)
T cd08225         129 -----------------------------SQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPY  179 (257)
T ss_pred             -----------------------------HHHEEEcCCCCeEEecccccchhccCCcccccccCCCccccCHHHHcCCCC
Confidence                                         78888877754 699999998765543322333457888999999988889


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +.++|+||+|+++|++++|..||...+.......+......  ......+.++.+++.+||..+|++|||++|+++||||
T Consensus       180 ~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~~~~  257 (257)
T cd08225         180 NNKTDIWSLGCVLYELCTLKHPFEGNNLHQLVLKICQGYFA--PISPNFSRDLRSLISQLFKVSPRDRPSITSILKRPFL  257 (257)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhcccCC--CCCCCCCHHHHHHHHHHhccChhhCcCHHHHhhCCCC
Confidence            99999999999999999999999766554444433332211  2234578899999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=100.00  E-value=1e-36  Score=251.42  Aligned_cols=200  Identities=26%  Similarity=0.460  Sum_probs=165.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++......|+||||+++++|.+++......+++..+..++.|++.||.|||++|++|||||     
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~-----  127 (256)
T cd05059          53 MMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLA-----  127 (256)
T ss_pred             HHhCCCCCEEEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCccccccc-----
Confidence            357899999999999999999999999999999999997656678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc-cccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR-NTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++|+|||.+.......... ....++..|+|||.+.+..++
T Consensus       128 ----------------------------p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~  179 (256)
T cd05059         128 ----------------------------ARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFS  179 (256)
T ss_pred             ----------------------------HhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHHHhccCCCC
Confidence                                        888999889999999999986543221111 111223469999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++|+||+|+++|++++ |..||...+.......+.....  ...+..++.++.+++.+||..+|++|||++|+++.
T Consensus       180 ~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~  254 (256)
T cd05059         180 SKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVESVSAGYR--LYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQ  254 (256)
T ss_pred             chhhHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcCCc--CCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence            99999999999999998 8999976655554444433322  22345689999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=100.00  E-value=1.1e-36  Score=257.76  Aligned_cols=202  Identities=48%  Similarity=0.871  Sum_probs=168.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||+++++++..+...|+||||+. |+|.+++......+++..+..++.|++.||.|||+.|++||||+      
T Consensus        70 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~-g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~------  142 (307)
T cd06607          70 QQLRHPNTIEYKGCYLREHTAWLVMEYCL-GSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIK------  142 (307)
T ss_pred             HhCCCCCEEEEEEEEEeCCeEEEEHHhhC-CCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC------
Confidence            56899999999999999999999999996 58888876556779999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc---cCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---EIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~  158 (251)
                                                 |+||+++.++.++|+|||++......    ....++..|+|||.+.   ...+
T Consensus       143 ---------------------------p~nIl~~~~~~~kL~dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~  191 (307)
T cd06607         143 ---------------------------AGNILLTEPGTVKLADFGSASLVSPA----NSFVGTPYWMAPEVILAMDEGQY  191 (307)
T ss_pred             ---------------------------cccEEECCCCCEEEeecCcceecCCC----CCccCCccccCceeeeccCCCCC
Confidence                                       88999999999999999998654322    2345677899999884   3568


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +.++||||||+++|++++|.+||.+.+.......+.....+.. ....++..+.+++.+||..+|++||++.+++.||||
T Consensus       192 ~~~sDv~s~G~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  270 (307)
T cd06607         192 DGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTL-SSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKHRFV  270 (307)
T ss_pred             CcccchHHHHHHHHHHHcCCCCCCCccHHHHHHHHhcCCCCCC-CchhhCHHHHHHHHHHhcCChhhCcCHHHHhcChhh
Confidence            8899999999999999999999977665554444433322222 234578899999999999999999999999999999


Q ss_pred             hhcc
Q psy3253         239 QRHD  242 (251)
Q Consensus       239 ~~~~  242 (251)
                      .+..
T Consensus       271 ~~~~  274 (307)
T cd06607         271 LRER  274 (307)
T ss_pred             cccC
Confidence            8754

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=1.2e-36  Score=257.12  Aligned_cols=200  Identities=20%  Similarity=0.374  Sum_probs=159.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC------------------CCCCHHHHHHHHHHHHHHHH
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK------------------KTLSEDEIATILCDTLKGLE   62 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~------------------~~l~~~~~~~~~~~i~~~l~   62 (251)
                      |++++||||+++++++.+....++||||+.+|+|.+++....                  ..+++..+..++.||+.||.
T Consensus        73 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~  152 (304)
T cd05096          73 LSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMK  152 (304)
T ss_pred             HhhcCCCCeeEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHH
Confidence            457899999999999999899999999999999999986321                  23677889999999999999


Q ss_pred             HHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccc
Q psy3253          63 YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNT  140 (251)
Q Consensus        63 ~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~  140 (251)
                      |||+.|++|||||                                 |+||+++.++.+||+|||++........  ....
T Consensus       153 ~lH~~~ivH~dlk---------------------------------p~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~  199 (304)
T cd05096         153 YLSSLNFVHRDLA---------------------------------TRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGR  199 (304)
T ss_pred             HHHHCCccccCcc---------------------------------hhheEEcCCccEEECCCccceecccCceeEecCc
Confidence            9999999999988                                 8888998899999999999975432211  1222


Q ss_pred             cccccccccccccccCCCCcchhHHHHHHHHHHHHh--CCCCCCCCCcchhhhhcC----C-CCCCCCCCCCCCCHHHHH
Q psy3253         141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE--GKPPYGDIHPMRAIFMIP----T-KPPPSFREPDVWTPEFID  213 (251)
Q Consensus       141 ~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~--g~~p~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~  213 (251)
                      ..++..|+|||.+....++.++|||||||++|+|++  +..||.............    . ........+..++..+.+
T Consensus       200 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (304)
T cd05096         200 AVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTDEQVIENAGEFFRDQGRQVYLFRPPPCPQGLYE  279 (304)
T ss_pred             CCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCHHHHHHHHHHHhhhccccccccCCCCCCHHHHH
Confidence            344678999999988889999999999999999986  567886654433322110    0 111112234567899999


Q ss_pred             HHHHhhhcCcCccCCHHHHh
Q psy3253         214 FVSRCLVKNPEERATASEML  233 (251)
Q Consensus       214 li~~~l~~~p~~Rps~~evl  233 (251)
                      ++.+||+.||++|||++|+.
T Consensus       280 li~~cl~~~p~~RPs~~~i~  299 (304)
T cd05096         280 LMLQCWSRDCRERPSFSDIH  299 (304)
T ss_pred             HHHHHccCCchhCcCHHHHH
Confidence            99999999999999999995

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=1.1e-36  Score=253.95  Aligned_cols=201  Identities=23%  Similarity=0.324  Sum_probs=155.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...++||||+++|+|..++......+++..+..++.|++.||.|||++|++||||||+||+
T Consensus        70 ~~~l~h~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nil  149 (274)
T cd05076          70 MSQVSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNIL  149 (274)
T ss_pred             HhcCCCCCeeeEEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEE
Confidence            45789999999999999999999999999999999999755678999999999999999999999999999999955555


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                      +..                          ....-.....++++|||.+......    ....++..|+|||.+.+ ..++
T Consensus       150 l~~--------------------------~~~~~~~~~~~kl~d~g~~~~~~~~----~~~~~~~~~~aPe~~~~~~~~~  199 (274)
T cd05076         150 LAR--------------------------LGLAEGTSPFIKLSDPGVSFTALSR----EERVERIPWIAPECVPGGNSLS  199 (274)
T ss_pred             Eec--------------------------cCcccCccceeeecCCccccccccc----cccccCCcccCchhhcCCCCCC
Confidence            441                          1111112234899999987543221    12345777999998865 5688


Q ss_pred             cchhHHHHHHHHHHHH-hCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMA-EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~-~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++|+|||||++|+++ +|..||...............    ...+...++.+.++|.+||+.+|++|||+++++++
T Consensus       200 ~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~  272 (274)
T cd05076         200 TAADKWSFGTTLLEICFDGEVPLKERTPSEKERFYEKK----HRLPEPSCKELATLISQCLTYEPTQRPSFRTILRD  272 (274)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCccccChHHHHHHHHhc----cCCCCCCChHHHHHHHHHcccChhhCcCHHHHHHh
Confidence            9999999999999985 699999765443332221111    11233456789999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=100.00  E-value=3.8e-37  Score=258.76  Aligned_cols=203  Identities=25%  Similarity=0.438  Sum_probs=162.6

Q ss_pred             CCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      ++++||||+++++++...  ...|+||||+. ++|.+++......+++..++.++.|++.||.|||++|++|+|||    
T Consensus        59 ~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~----  133 (293)
T cd07843          59 LKLQHPNIVTVKEVVVGSNLDKIYMVMEYVE-HDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLK----  133 (293)
T ss_pred             HhcCCCCEEEEEEEEEecCCCcEEEEehhcC-cCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCC----
Confidence            468899999999999877  88999999996 59999987555679999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccC-CC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~  158 (251)
                                                   |+||+++.++.++|+|||.+..............++..|+|||.+.+. .+
T Consensus       134 -----------------------------p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~  184 (293)
T cd07843         134 -----------------------------TSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEY  184 (293)
T ss_pred             -----------------------------HHHEEECCCCcEEEeecCceeeccCCccccccccccccccCchhhcCCccc
Confidence                                         889999999999999999997665432333334567889999998654 46


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC------------------C----------CCCCCCCCC-CCH
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK------------------P----------PPSFREPDV-WTP  209 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~------------------~----------~~~~~~~~~-~~~  209 (251)
                      +.++|+||+|+++|+|++|.+||...........+...                  .          ......+.. +++
T Consensus       185 ~~~~Di~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (293)
T cd07843         185 STAIDMWSVGCIFAELLTKKPLFPGKSEIDQLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSD  264 (293)
T ss_pred             cchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhccccccCCCh
Confidence            88999999999999999999999755433222111000                  0          000001122 588


Q ss_pred             HHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         210 EFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       210 ~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .+.++|.+||+.+|++|||++|++.||||
T Consensus       265 ~~~~li~~~l~~~p~~R~t~~ell~~~~f  293 (293)
T cd07843         265 NGFDLLNRLLTYDPAKRISAEDALKHPYF  293 (293)
T ss_pred             HHHHHHHHHhccCccccCCHHHHhcCCCC
Confidence            89999999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=100.00  E-value=1.3e-36  Score=251.26  Aligned_cols=198  Identities=26%  Similarity=0.459  Sum_probs=163.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++. ....++||||+.+++|.+++......+++..++.++.|++.||.|||++|++|||||     
T Consensus        49 l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk-----  122 (257)
T cd05115          49 MHQLDNPYIVRMIGVCE-AEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLA-----  122 (257)
T ss_pred             HHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccc-----
Confidence            46789999999999885 457899999999999999997656789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc---ccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.++|+|||++.........   .....++..|+|||.+.+..
T Consensus       123 ----------------------------p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  174 (257)
T cd05115         123 ----------------------------ARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRK  174 (257)
T ss_pred             ----------------------------hheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCC
Confidence                                        88888888899999999998754322111   11112246799999998888


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++.++|+|||||++|++++ |..||.+.........+......  ..+..+++++.+++.+||..+|++||+++++.+
T Consensus       175 ~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~  250 (257)
T cd05115         175 FSSRSDVWSYGITMWEAFSYGQKPYKKMKGPEVMSFIEQGKRL--DCPAECPPEMYALMKDCWIYKWEDRPNFAKVEE  250 (257)
T ss_pred             CCchhhHHHHHHHHHHHhcCCCCCcCcCCHHHHHHHHHCCCCC--CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            9999999999999999996 99999877665555444443322  235667999999999999999999999999964

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=100.00  E-value=1.5e-36  Score=255.12  Aligned_cols=199  Identities=24%  Similarity=0.421  Sum_probs=165.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHH
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLH   65 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH   65 (251)
                      |++++||||+++++++.+....++||||+.+++|.+++....               ..+++..++.++.||+.||.|||
T Consensus        61 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH  140 (291)
T cd05094          61 LTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLA  140 (291)
T ss_pred             HhcCCCCCcceEEEEEccCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999997432               34789999999999999999999


Q ss_pred             hCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccc
Q psy3253          66 LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIG  143 (251)
Q Consensus        66 ~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~  143 (251)
                      ++|++|||||                                 |+||+++.++.++|+|||++........  ......+
T Consensus       141 ~~~i~H~dlk---------------------------------p~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~  187 (291)
T cd05094         141 SQHFVHRDLA---------------------------------TRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTML  187 (291)
T ss_pred             hCCeeecccC---------------------------------cceEEEccCCcEEECCCCcccccCCCceeecCCCCCc
Confidence            9999999988                                 8899999999999999999975433211  1223345


Q ss_pred             ccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcC
Q psy3253         144 TPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN  222 (251)
Q Consensus       144 ~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  222 (251)
                      +..|+|||.+.+..++.++|+|||||++|+|++ |..||...+.......+......  ..+..++..+.+++.+||+.+
T Consensus       188 ~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~  265 (291)
T cd05094         188 PIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVL--ERPRVCPKEVYDIMLGCWQRE  265 (291)
T ss_pred             ceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhCCCCC--CCCccCCHHHHHHHHHHcccC
Confidence            678999999988889999999999999999998 99999776655544443333222  224557899999999999999


Q ss_pred             cCccCCHHHHhc
Q psy3253         223 PEERATASEMLN  234 (251)
Q Consensus       223 p~~Rps~~evl~  234 (251)
                      |++|||++++++
T Consensus       266 P~~Rpt~~~v~~  277 (291)
T cd05094         266 PQQRLNIKEIYK  277 (291)
T ss_pred             hhhCcCHHHHHH
Confidence            999999999974

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=100.00  E-value=1.2e-36  Score=253.83  Aligned_cols=200  Identities=21%  Similarity=0.395  Sum_probs=162.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------CCCCHHHHHHHHHHHHHHHHHHHhCCccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------KTLSEDEIATILCDTLKGLEYLHLRRKIH   71 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH   71 (251)
                      |+.++||||+++++++..+...++||||+.+++|.+++....         ..++...+..++.|++.||.|||+.|++|
T Consensus        63 l~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH  142 (277)
T cd05062          63 MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVH  142 (277)
T ss_pred             HHhCCCCCeeeEEEEEcCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCccc
Confidence            356899999999999998899999999999999999996432         23577888999999999999999999999


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--cccccccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIGTPFWMA  149 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~a  149 (251)
                      ||||                                 |+||+++.++.++++|||++.........  .....++..|+|
T Consensus       143 ~dlk---------------------------------p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  189 (277)
T cd05062         143 RDLA---------------------------------ARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMS  189 (277)
T ss_pred             CCcc---------------------------------hheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcC
Confidence            9988                                 88889988999999999998654322111  112234667999


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC
Q psy3253         150 PEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT  228 (251)
Q Consensus       150 PE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  228 (251)
                      ||.+.+..++.++|+|||||++|++++ |..||.+.........+......  ..+..++..+.+++.+||+.||++|||
T Consensus       190 PE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps  267 (277)
T cd05062         190 PESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNEQVLRFVMEGGLL--DKPDNCPDMLFELMRMCWQYNPKMRPS  267 (277)
T ss_pred             hhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcC--CCCCCCCHHHHHHHHHHcCCChhhCcC
Confidence            999988889999999999999999998 78899776655444433333221  234567899999999999999999999


Q ss_pred             HHHHhcC
Q psy3253         229 ASEMLNH  235 (251)
Q Consensus       229 ~~evl~h  235 (251)
                      +.|++++
T Consensus       268 ~~e~l~~  274 (277)
T cd05062         268 FLEIISS  274 (277)
T ss_pred             HHHHHHH
Confidence            9999864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=100.00  E-value=1.6e-36  Score=249.75  Aligned_cols=199  Identities=27%  Similarity=0.497  Sum_probs=169.2

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh--------CCCCCHHHHHHHHHHHHHHHHHHHhCCccccC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR--------KKTLSEDEIATILCDTLKGLEYLHLRRKIHRD   73 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~--------~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~d   73 (251)
                      +.++||||+++++++.++...+++|||+.+++|.+++...        ...+++..+..++.|++.||.|||++|++|+|
T Consensus        51 ~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~d  130 (262)
T cd00192          51 KKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRD  130 (262)
T ss_pred             hhcCCCChheeeeeecCCCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCc
Confidence            5678999999999999999999999999999999999854        47899999999999999999999999999999


Q ss_pred             CCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--cccccccccccccccc
Q psy3253          74 IKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPE  151 (251)
Q Consensus        74 ik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE  151 (251)
                      ||                                 |+||+++.++.++|+|||.+.......  .......++..|+|||
T Consensus       131 i~---------------------------------p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  177 (262)
T cd00192         131 LA---------------------------------ARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPE  177 (262)
T ss_pred             cC---------------------------------cceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHH
Confidence            88                                 889999999999999999997654322  1223344677899999


Q ss_pred             ccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         152 VIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       152 ~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      .+....++.++|+||+|+++|++++ |..||...........+....  ....+..+++++.+++.+||..+|++|||++
T Consensus       178 ~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  255 (262)
T cd00192         178 SLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEEVLEYLRKGY--RLPKPEYCPDELYELMLSCWQLDPEDRPTFS  255 (262)
T ss_pred             HhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC--CCCCCccCChHHHHHHHHHccCCcccCcCHH
Confidence            9988889999999999999999999 699998776555554444432  2334566799999999999999999999999


Q ss_pred             HHhcC
Q psy3253         231 EMLNH  235 (251)
Q Consensus       231 evl~h  235 (251)
                      |++++
T Consensus       256 ~l~~~  260 (262)
T cd00192         256 ELVER  260 (262)
T ss_pred             HHHHh
Confidence            99864

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=100.00  E-value=1.7e-36  Score=251.28  Aligned_cols=200  Identities=27%  Similarity=0.454  Sum_probs=167.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....+++|||+.+++|.+++......+++..+..++.|++.||.|||++|++|||||     
T Consensus        59 l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~-----  133 (266)
T cd05033          59 MGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLA-----  133 (266)
T ss_pred             HHhCCCCCcceEeEEEecCCceEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----
Confidence            357899999999999999999999999999999999997666689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.++|+|||++........  ......++..|+|||.+.+..+
T Consensus       134 ----------------------------p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~  185 (266)
T cd05033         134 ----------------------------ARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKF  185 (266)
T ss_pred             ----------------------------cceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCC
Confidence                                        8899999999999999999976642111  1111223567999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      +.++|+||||+++|++++ |..||...........+.....  ...+..++..+.+++.+||+.+|++||+++|++++
T Consensus       186 ~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~  261 (266)
T cd05033         186 TSASDVWSFGIVMWEVMSYGERPYWDMSNQDVIKAVEDGYR--LPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVST  261 (266)
T ss_pred             ccccchHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCC--CCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            999999999999999998 9999977665555444433322  12345678999999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=100.00  E-value=1.8e-36  Score=254.43  Aligned_cols=204  Identities=24%  Similarity=0.415  Sum_probs=159.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...|+||||+. ++|.+++......+.+..+..++.|++.||.|||+.|++|+|||     
T Consensus        57 l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlk-----  130 (291)
T cd07870          57 LKGLKHANIVLLHDIIHTKETLTFVFEYMH-TDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLK-----  130 (291)
T ss_pred             HHhcCCCCEeEEEEEEecCCeEEEEEeccc-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----
Confidence            357899999999999999999999999995 68877776555678889999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.++|+|||++..............++..|+|||.+.+ ..++
T Consensus       131 ----------------------------p~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  182 (291)
T cd07870         131 ----------------------------PQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYS  182 (291)
T ss_pred             ----------------------------hHHEEEcCCCcEEEeccccccccCCCCCCCCCccccccccCCceeecCCCCC
Confidence                                        88888888899999999998754332222233456788999999865 4578


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchh-hhhc------------------CC-------CC-CCCC---CCCCCCCH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRA-IFMI------------------PT-------KP-PPSF---REPDVWTP  209 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~-~~~~------------------~~-------~~-~~~~---~~~~~~~~  209 (251)
                      .++|+||+|+++|++++|..||........ ....                  ..       .. +...   ......++
T Consensus       183 ~~~Dv~slG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (291)
T cd07870         183 SALDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRPP  262 (291)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhccccCCCh
Confidence            899999999999999999999965432111 0000                  00       00 0000   00011367


Q ss_pred             HHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         210 EFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       210 ~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      ++.+++.+|+..||++|||++|++.||||
T Consensus       263 ~~~~ll~~~l~~dp~~R~t~~~~l~h~~~  291 (291)
T cd07870         263 KAEDLASQMLMMFPKDRISAQDALLHPYF  291 (291)
T ss_pred             HHHHHHHHHhCcCcccCcCHHHHhcCCCC
Confidence            89999999999999999999999999997

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=100.00  E-value=7.3e-37  Score=261.36  Aligned_cols=211  Identities=28%  Similarity=0.555  Sum_probs=162.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +.++||||++++++|..+...++||||+.+++|.+++.+. ...+++..+..++.|++.||.|||+.|++|||||     
T Consensus        54 ~~l~h~niv~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlk-----  128 (328)
T cd08226          54 HFFRHPNIMTSWTVFTTGSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIK-----  128 (328)
T ss_pred             HhCCCCCcceEeeeEecCCceEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----
Confidence            4589999999999999999999999999999999998743 2468999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-------cccccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-------RNTVIGTPFWMAPEVI  153 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~~y~aPE~~  153 (251)
                                                  |+||+++.++.++++||+.+.........       .....++..|+|||.+
T Consensus       129 ----------------------------p~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (328)
T cd08226         129 ----------------------------ASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELL  180 (328)
T ss_pred             ----------------------------HHHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCccCccChhhh
Confidence                                        88888888889999999765322111000       0111234569999999


Q ss_pred             cc--CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC---------------------------------
Q psy3253         154 QE--IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP---------------------------------  198 (251)
Q Consensus       154 ~~--~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~---------------------------------  198 (251)
                      .+  ..++.++||||+||++|++++|..||.................                                 
T Consensus       181 ~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (328)
T cd08226         181 RQDLYGYNVKSDIYSVGITACELATGRVPFQDMLRTQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVA  260 (328)
T ss_pred             cCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcChHHHHHHHhcCCCCCCccccccchhhhhhccchhhhhcccccchhc
Confidence            65  4478899999999999999999999976543222211111000                                 


Q ss_pred             -----------CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         199 -----------PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       199 -----------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                                 ........+++.+.+|+.+||..||++|||++|+++||||+......
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~~~~~~~~  318 (328)
T cd08226         261 AGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQVKEQT  318 (328)
T ss_pred             cccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHHHHHHHHhc
Confidence                       00011233567899999999999999999999999999998876543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=100.00  E-value=1.6e-36  Score=251.12  Aligned_cols=199  Identities=23%  Similarity=0.421  Sum_probs=165.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++..+...+++|||+.+++|.+++.... ..+++..++.++.|++.||.|||+.|++|||||    
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlk----  131 (263)
T cd05052          56 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLA----  131 (263)
T ss_pred             HHhCCCCChhheEEEEcCCCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccC----
Confidence            357899999999999999999999999999999999986433 468999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-ccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.++|+|||.+......... .....++..|+|||.+.+..+
T Consensus       132 -----------------------------p~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  182 (263)
T cd05052         132 -----------------------------ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKF  182 (263)
T ss_pred             -----------------------------cceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCHHHhccCCC
Confidence                                         88888888999999999998765432111 112223557999999988899


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|||||||++|+|++ |..||.+.+.......+.....  ...+..+++++.+++.+||+.||++|||++|+++
T Consensus       183 ~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~  257 (263)
T cd05052         183 SIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKGYR--MERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQ  257 (263)
T ss_pred             CchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence            999999999999999998 9999977665554444433322  2335668999999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=100.00  E-value=1.5e-36  Score=253.22  Aligned_cols=199  Identities=23%  Similarity=0.411  Sum_probs=165.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-------------CCCCHHHHHHHHHHHHHHHHHHHhC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-------------KTLSEDEIATILCDTLKGLEYLHLR   67 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-------------~~l~~~~~~~~~~~i~~~l~~LH~~   67 (251)
                      |+.++||||+++++++......+++|||+.+++|.++++..+             ..+++..+..++.|++.||.+||++
T Consensus        62 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~  141 (280)
T cd05049          62 LTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ  141 (280)
T ss_pred             HHhcCCCCchheeeEEecCCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC
Confidence            357899999999999999999999999999999999997432             3478889999999999999999999


Q ss_pred             CccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccc
Q psy3253          68 RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTP  145 (251)
Q Consensus        68 ~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~  145 (251)
                      |++|||||                                 |+||+++.++.++|+|||++........  ......++.
T Consensus       142 ~i~h~dlk---------------------------------p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~  188 (280)
T cd05049         142 HFVHRDLA---------------------------------TRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPI  188 (280)
T ss_pred             Ceeccccc---------------------------------cceEEEcCCCeEEECCcccceecccCcceecCCCCcccc
Confidence            99999988                                 8888998899999999999865432211  112233467


Q ss_pred             ccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcC
Q psy3253         146 FWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE  224 (251)
Q Consensus       146 ~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  224 (251)
                      .|+|||.+.+..++.++||||+||++|++++ |..||...+.......+.......  .+..++..+.+++.+||+.||+
T Consensus       189 ~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~  266 (280)
T cd05049         189 RWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEEVIECITQGRLLQ--RPRTCPSEVYDIMLGCWKRDPQ  266 (280)
T ss_pred             eecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCcCC--CCCCCCHHHHHHHHHHcCCCcc
Confidence            7999999999899999999999999999998 999997766666555544333222  2456789999999999999999


Q ss_pred             ccCCHHHHhc
Q psy3253         225 ERATASEMLN  234 (251)
Q Consensus       225 ~Rps~~evl~  234 (251)
                      +||+++|+++
T Consensus       267 ~Rp~~~eil~  276 (280)
T cd05049         267 QRINIKDIHE  276 (280)
T ss_pred             cCCCHHHHHH
Confidence            9999999984

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>KOG0671|consensus

Probab=100.00  E-value=5.5e-38  Score=259.55  Aligned_cols=217  Identities=24%  Similarity=0.300  Sum_probs=165.4

Q ss_pred             cceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccc
Q psy3253           9 VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD   87 (251)
Q Consensus         9 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~   87 (251)
                      +|++.+.|.-.++.|+|+|.+ |.|+++++..+ ..+++...++.++.|++.+++|||+.+++|.|+|||||+|+-+...
T Consensus       153 cv~m~~wFdyrghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~  231 (415)
T KOG0671|consen  153 CVQMRDWFDYRGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYF  231 (415)
T ss_pred             EEeeehhhhccCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceE
Confidence            567777888899999999999 66999999753 3679999999999999999999999999999999999999954332


Q ss_pred             cccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhHHHH
Q psy3253          88 YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSL  167 (251)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvwsl  167 (251)
                      --...       +..      ..-+-..++..++++|||.|....   ......+.|..|+|||++.+.+|+.++||||+
T Consensus       232 ~~~~~-------k~~------~~~~r~~ks~~I~vIDFGsAtf~~---e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSi  295 (415)
T KOG0671|consen  232 KTYNP-------KKK------VCFIRPLKSTAIKVIDFGSATFDH---EHHSTIVSTRHYRAPEVILGLGWSQPCDVWSI  295 (415)
T ss_pred             EEecc-------CCc------cceeccCCCcceEEEecCCcceec---cCcceeeeccccCCchheeccCcCCccCceee
Confidence            10000       000      011233456679999999995433   23466778999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCcchhhh---hcCCCCCCCCCC---------------C-------------------------
Q psy3253         168 GITALEMAEGKPPYGDIHPMRAIF---MIPTKPPPSFRE---------------P-------------------------  204 (251)
Q Consensus       168 G~~l~~l~~g~~p~~~~~~~~~~~---~~~~~~~~~~~~---------------~-------------------------  204 (251)
                      ||+|+|+++|...|++.++.+...   .+.+..+.....               +                         
T Consensus       296 GCIL~ElytG~~LFqtHen~EHLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~  375 (415)
T KOG0671|consen  296 GCILVELYTGETLFQTHENLEHLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQD  375 (415)
T ss_pred             eeEEEEeeccceecccCCcHHHHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccC
Confidence            999999999999998766555332   232211110000               0                         


Q ss_pred             CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         205 DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       205 ~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                      +.-..+++||+++||.+||.+|+|+.|+|.||||.+..
T Consensus       376 d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~HpFF~~~~  413 (415)
T KOG0671|consen  376 DLEHVQLFDLLRRMLEFDPARRITLREALSHPFFARLT  413 (415)
T ss_pred             cHHHhHHHHHHHHHHccCccccccHHHHhcCHHhhcCC
Confidence            00024489999999999999999999999999998754

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=100.00  E-value=1.1e-36  Score=284.34  Aligned_cols=225  Identities=25%  Similarity=0.423  Sum_probs=169.0

Q ss_pred             CCCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhC-------C
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLHLR-------R   68 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH~~-------~   68 (251)
                      |++++|||||+++++|.+.  ..+|+||||+.+|+|.+++...   ...+++..++.++.||+.||.|||+.       +
T Consensus        66 L~~L~HPNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~  145 (1021)
T PTZ00266         66 MRELKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGER  145 (1021)
T ss_pred             HHHcCCCCcCeEEEEEEecCCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence            4578999999999998653  5699999999999999999632   35799999999999999999999984       4


Q ss_pred             ccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccc
Q psy3253          69 KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWM  148 (251)
Q Consensus        69 iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~  148 (251)
                      |+||||||+||||........                .+.......+..+.+||+|||++....... ......+|+.|+
T Consensus       146 IVHRDLKPeNILL~s~~~~lg----------------~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s-~~~s~vGTp~Ym  208 (1021)
T PTZ00266        146 VLHRDLKPQNIFLSTGIRHIG----------------KITAQANNLNGRPIAKIGDFGLSKNIGIES-MAHSCVGTPYYW  208 (1021)
T ss_pred             ceeccCcHHHeEeecCccccc----------------cccccccccCCCCceEEccCCccccccccc-cccccCCCcccc
Confidence            999999999888863210000                000011112344569999999997654321 223346899999


Q ss_pred             ccccccc--CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         149 APEVIQE--IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       149 aPE~~~~--~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      |||++.+  ..++.++|||||||++|+|++|..||................+ .. .....+.++.+||.+||..+|.+|
T Consensus       209 APEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~~qli~~lk~~p-~l-pi~~~S~eL~dLI~~~L~~dPeeR  286 (1021)
T PTZ00266        209 SPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNFSQLISELKRGP-DL-PIKGKSKELNILIKNLLNLSAKER  286 (1021)
T ss_pred             CHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcHHHHHHHHhcCC-CC-CcCCCCHHHHHHHHHHhcCChhHC
Confidence            9999854  4578899999999999999999999976544333322222211 11 124568999999999999999999


Q ss_pred             CCHHHHhcChhhhhccCC
Q psy3253         227 ATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       227 ps~~evl~hp~~~~~~~~  244 (251)
                      |++.|+|.|||++.....
T Consensus       287 PSa~QlL~h~~ik~i~~p  304 (1021)
T PTZ00266        287 PSALQCLGYQIIKNVGPP  304 (1021)
T ss_pred             cCHHHHhccHHHhhcCCC
Confidence            999999999999876554

>KOG0986|consensus

Probab=100.00  E-value=7.3e-38  Score=263.74  Aligned_cols=209  Identities=26%  Similarity=0.403  Sum_probs=178.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++.|.||.+-.+|++++.+|+||..|+||+|.-.+.+. +..|++..++.++.+|+.||.+||..+|++||+|    
T Consensus       239 L~kV~s~FiVslaYAfeTkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLK----  314 (591)
T KOG0986|consen  239 LEKVSSPFIVSLAYAFETKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLK----  314 (591)
T ss_pred             HHHhccCcEEEEeeeecCCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCC----
Confidence            45788999999999999999999999999999998766532 3589999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.+|+++|+|+|+|..+..... .....||..|||||++.+..|+
T Consensus       315 -----------------------------PeNILLDd~GhvRISDLGLAvei~~g~~-~~~rvGT~GYMAPEvl~ne~Y~  364 (591)
T KOG0986|consen  315 -----------------------------PENILLDDHGHVRISDLGLAVEIPEGKP-IRGRVGTVGYMAPEVLQNEVYD  364 (591)
T ss_pred             -----------------------------hhheeeccCCCeEeeccceEEecCCCCc-cccccCcccccCHHHHcCCccc
Confidence                                         9999999999999999999988765533 3345899999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---CCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASE  231 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~e  231 (251)
                      ...|-||+||++|+|+.|+.||...........+   ....  ....+..++++++++...+|..||++|.     .+++
T Consensus       365 ~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~--~~ey~~kFS~eakslc~~LL~Kdp~~RLGcrg~ga~e  442 (591)
T KOG0986|consen  365 FSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLED--PEEYSDKFSEEAKSLCEGLLTKDPEKRLGCRGEGAQE  442 (591)
T ss_pred             CCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcc--hhhcccccCHHHHHHHHHHHccCHHHhccCCCcCcch
Confidence            9999999999999999999999654333222111   1122  2233578899999999999999999996     6789


Q ss_pred             HhcChhhhhccCCC
Q psy3253         232 MLNHEFIQRHDTDP  245 (251)
Q Consensus       232 vl~hp~~~~~~~~~  245 (251)
                      |-+||||+..+|.-
T Consensus       443 vk~HpfFk~lnw~r  456 (591)
T KOG0986|consen  443 VKEHPFFKDLNWRR  456 (591)
T ss_pred             hhhCcccccCCHhH
Confidence            99999999998853

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=100.00  E-value=3.4e-37  Score=257.89  Aligned_cols=204  Identities=26%  Similarity=0.502  Sum_probs=163.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+.++||||+++++++..+...|+||||+++++|..+.. ....+++..++.++.|++.||.|||+.|++|+|++     
T Consensus        54 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~-~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~-----  127 (286)
T cd07846          54 LKQLRHENLVNLIEVFRRKKRLYLVFEFVDHTVLDDLEK-YPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIK-----  127 (286)
T ss_pred             HHhcCCcchhhHHHhcccCCeEEEEEecCCccHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC-----
Confidence            356899999999999999999999999999989888765 44569999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.++|+|||++..............++..|+|||.+.+ ..++
T Consensus       128 ----------------------------p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  179 (286)
T cd07846         128 ----------------------------PENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYG  179 (286)
T ss_pred             ----------------------------HHHEEECCCCcEEEEeeeeeeeccCCccccCcccceeeccCcHHhccccccC
Confidence                                        88999999999999999998765433222233456788999999865 4467


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---------------------CCCCC-------CCCCCCCCHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---------------------KPPPS-------FREPDVWTPEF  211 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---------------------~~~~~-------~~~~~~~~~~~  211 (251)
                      .++||||+|+++|++++|.+||...........+..                     ...+.       ......++..+
T Consensus       180 ~~~Dv~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (286)
T cd07846         180 RAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLV  259 (286)
T ss_pred             chHhHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCCcCHHH
Confidence            889999999999999999999965443221111000                     00000       01123568889


Q ss_pred             HHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         212 IDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       212 ~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .+++.+||+.+|++||+++|+++||||
T Consensus       260 ~~li~~~l~~~P~~Rp~~~~il~~~~~  286 (286)
T cd07846         260 LDLAKQCLRIDPDDRPSSSQLLHHEFF  286 (286)
T ss_pred             HHHHHHHhcCCcccchhHHHHhcCCCC
Confidence            999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=100.00  E-value=5.9e-37  Score=266.51  Aligned_cols=199  Identities=27%  Similarity=0.484  Sum_probs=160.1

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC--------------------------------------
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK--------------------------------------   42 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~--------------------------------------   42 (251)
                      +.+ +||||+++++++......++||||+.+|+|.++++...                                      
T Consensus        96 ~~l~~h~nIv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (374)
T cd05106          96 SHLGQHKNIVNLLGACTHGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSS  175 (374)
T ss_pred             HhhccCCceeeEeeEecCCCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccc
Confidence            456 89999999999999999999999999999999986321                                      


Q ss_pred             -------------------------------CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccc
Q psy3253          43 -------------------------------KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSI   91 (251)
Q Consensus        43 -------------------------------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~   91 (251)
                                                     ..+++..++.++.||+.||.|||++|++|||||                
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLk----------------  239 (374)
T cd05106         176 QGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVA----------------  239 (374)
T ss_pred             cccccccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCc----------------
Confidence                                           246788899999999999999999999999988                


Q ss_pred             cccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCCCCcchhHHHHHH
Q psy3253          92 KCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGI  169 (251)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~  169 (251)
                                       |+||+++.++.++|+|||++........  ......++..|+|||++.+..++.++||||+||
T Consensus       240 -----------------p~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGv  302 (374)
T cd05106         240 -----------------ARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGI  302 (374)
T ss_pred             -----------------hheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHH
Confidence                             8888888888999999999975433211  112223456799999998888999999999999


Q ss_pred             HHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         170 TALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       170 ~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++|+|++ |..||................ .....+...++++.+++.+||+.||++|||++|+++
T Consensus       303 il~ellt~G~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~  367 (374)
T cd05106         303 LLWEIFSLGKSPYPGILVNSKFYKMVKRG-YQMSRPDFAPPEIYSIMKMCWNLEPTERPTFSQISQ  367 (374)
T ss_pred             HHHHHHhCCCCCCccccccHHHHHHHHcc-cCccCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            9999997 999997654433332222211 122234556899999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=100.00  E-value=2e-36  Score=249.80  Aligned_cols=197  Identities=27%  Similarity=0.466  Sum_probs=162.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+.++||||+++++++. ....++||||+.+|+|.+++. ....+++..+..++.|++.||.|||++|++|||||     
T Consensus        50 l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlk-----  122 (257)
T cd05116          50 MQQLDNPYIVRMIGICE-AESWMLVMELAELGPLNKFLQ-KNKHVTEKNITELVHQVSMGMKYLEETNFVHRDLA-----  122 (257)
T ss_pred             HHhCCCCCcceEEEEEc-CCCcEEEEecCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccc-----
Confidence            35689999999999885 456799999999999999996 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc---ccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.++|+|||++.........   .....++..|+|||.+.+..
T Consensus       123 ----------------------------p~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  174 (257)
T cd05116         123 ----------------------------ARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYK  174 (257)
T ss_pred             ----------------------------hhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCC
Confidence                                        88888888889999999999765432211   11122346799999998888


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++.++|+|||||++|++++ |..||...........+.....  ...+..+++++.++|.+||+.||++||++++|..
T Consensus       175 ~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~i~~~~~--~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~  250 (257)
T cd05116         175 FSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNEVTQMIESGER--MECPQRCPPEMYDLMKLCWTYGVDERPGFAVVEL  250 (257)
T ss_pred             cCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHH
Confidence            8999999999999999998 9999987666555555544332  2345678999999999999999999999999964

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=100.00  E-value=1.7e-36  Score=251.16  Aligned_cols=203  Identities=36%  Similarity=0.623  Sum_probs=164.9

Q ss_pred             CCCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++.+.  ..++++|||+.+++|.+++. +...+++..++.++.|++.||.|||++|++|+|||   
T Consensus        58 l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~---  133 (265)
T cd06652          58 LKNLLHERIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLK-SYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIK---  133 (265)
T ss_pred             HHhcCCCCeeeEEeEeccCCCceEEEEEEecCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC---
Confidence            3578999999999998763  46889999999999999987 44678999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---ccccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~  155 (251)
                                                    |+||+++.++.++|+|||.+........   ......++..|+|||.+.+
T Consensus       134 ------------------------------p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  183 (265)
T cd06652         134 ------------------------------GANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISG  183 (265)
T ss_pred             ------------------------------HHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhhcC
Confidence                                          8888888889999999999875432111   1122346778999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ..++.++|+|||||++|++++|+.||................ .....+...+..+.+++.+|+. +|++||+++|+++|
T Consensus       184 ~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~  261 (265)
T cd06652         184 EGYGRKADIWSVGCTVVEMLTEKPPWAEFEAMAAIFKIATQP-TNPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLRH  261 (265)
T ss_pred             CCCCcchhHHHHHHHHHHHhhCCCCCCccchHHHHHHHhcCC-CCCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhcC
Confidence            889999999999999999999999997655444443333221 1222355678889999999995 99999999999999


Q ss_pred             hhhh
Q psy3253         236 EFIQ  239 (251)
Q Consensus       236 p~~~  239 (251)
                      ||++
T Consensus       262 ~~~~  265 (265)
T cd06652         262 TFVH  265 (265)
T ss_pred             cccC
Confidence            9984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=100.00  E-value=1.6e-36  Score=253.10  Aligned_cols=200  Identities=25%  Similarity=0.420  Sum_probs=161.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC------CCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK------KTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |++++||||+++++++.+....++||||+.+++|.+++....      ..+++..++.++.||+.||.|||++|++||||
T Consensus        63 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dl  142 (277)
T cd05036          63 MSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDI  142 (277)
T ss_pred             HHhCCCCCEeeEEEEEccCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeeccc
Confidence            357899999999999998889999999999999999997443      25899999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCC---CeEecccccccccCccccc--cccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG---HAKLADFGVAGQLTDTMAK--RNTVIGTPFWMA  149 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~---~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~a  149 (251)
                      |                                 |+||+++.++   .++|+|||+++........  ......+..|+|
T Consensus       143 k---------------------------------p~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  189 (277)
T cd05036         143 A---------------------------------ARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMP  189 (277)
T ss_pred             c---------------------------------hheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCC
Confidence            8                                 6666665443   5899999999765322111  112223457999


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC
Q psy3253         150 PEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT  228 (251)
Q Consensus       150 PE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  228 (251)
                      ||++.+..++.++|||||||++|+|++ |..||.+.+.......+......  ..+..++..+.+++.+||+.+|++|||
T Consensus       190 PE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~cl~~~p~~Rps  267 (277)
T cd05036         190 PEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQEVMEFVTGGGRL--DPPKGCPGPVYRIMTDCWQHTPEDRPN  267 (277)
T ss_pred             HHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcC--CCCCCCCHHHHHHHHHHcCCCcccCcC
Confidence            999988889999999999999999997 99999876655554444333222  235667899999999999999999999


Q ss_pred             HHHHhcC
Q psy3253         229 ASEMLNH  235 (251)
Q Consensus       229 ~~evl~h  235 (251)
                      ++++++|
T Consensus       268 ~~~vl~~  274 (277)
T cd05036         268 FATILER  274 (277)
T ss_pred             HHHHHHH
Confidence            9999975

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2e-36  Score=253.93  Aligned_cols=208  Identities=41%  Similarity=0.783  Sum_probs=164.4

Q ss_pred             CCCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      |++++||||++++++|...  ..+|+||||+++++|.+++..   ....+++..+..++.|++.||.|||+.|++|+||+
T Consensus        53 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~  132 (287)
T cd06621          53 NKSCKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIK  132 (287)
T ss_pred             HHhCCCCCeeeeeeEEEccCCCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            4578999999999998643  468999999999999988752   34568999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.++|+|||++.......  .....++..|+|||.+.+
T Consensus       133 ---------------------------------~~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~y~~pE~~~~  177 (287)
T cd06621         133 ---------------------------------PSNILLTRKGQVKLCDFGVSGELVNSL--AGTFTGTSFYMAPERIQG  177 (287)
T ss_pred             ---------------------------------HHHEEEecCCeEEEeeccccccccccc--cccccCCccccCHHHhcC
Confidence                                             888888888899999999986543221  122346778999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCc-----chhhhhcCCCCCCCCCC----CCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKPPPSFRE----PDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      ..++.++|+||+||++|+|++|..||.....     ......+.....+....    ...+++++.+++.+||..+|++|
T Consensus       178 ~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  257 (287)
T cd06621         178 KPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPLGPIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRR  257 (287)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCCChHHHHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcCCCcccC
Confidence            8899999999999999999999999965421     12222222211111111    12356789999999999999999


Q ss_pred             CCHHHHhcChhhhhccC
Q psy3253         227 ATASEMLNHEFIQRHDT  243 (251)
Q Consensus       227 ps~~evl~hp~~~~~~~  243 (251)
                      ||+.|++.||||+....
T Consensus       258 pt~~eil~~~~~~~~~~  274 (287)
T cd06621         258 PTPWDMLEHPWIKAQMK  274 (287)
T ss_pred             CCHHHHHhCcccccccc
Confidence            99999999999965543

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=100.00  E-value=2.3e-36  Score=253.03  Aligned_cols=206  Identities=34%  Similarity=0.656  Sum_probs=167.8

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni~   80 (251)
                      +.++||||+++++++......++||||+.+++|.+++. ..+.+++..+..++.+++.||.|||+ .|++|||||     
T Consensus        58 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~-----  131 (284)
T cd06620          58 HECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYK-KGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIK-----  131 (284)
T ss_pred             HHcCCCCcceEeeeEecCCEEEEEEecCCCCCHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCC-----
Confidence            46899999999999999999999999999999999886 45679999999999999999999997 689999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++......  ......++..|+|||.+.+..++.
T Consensus       132 ----------------------------p~nil~~~~~~~~l~d~gl~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~  181 (284)
T cd06620         132 ----------------------------PSNILVNSRGQIKLCDFGVSGELINS--IADTFVGTSTYMSPERIQGGKYTV  181 (284)
T ss_pred             ----------------------------HHHEEECCCCcEEEccCCcccchhhh--ccCccccCcccCCHHHHccCCCCc
Confidence                                        88889988999999999998654322  122346788999999998888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcc-----------hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPM-----------RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                      ++|+||+||++|++++|..||......           .....+.....+... ...++.++.+++.+||+.||++|||+
T Consensus       182 ~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~l~~dp~~Rpt~  260 (284)
T cd06620         182 KSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLP-SSDFPEDLRDFVDACLLKDPTERPTP  260 (284)
T ss_pred             cchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccCCCCC-chhcCHHHHHHHHHHhcCCcccCcCH
Confidence            999999999999999999999654331           111112112111211 22368899999999999999999999


Q ss_pred             HHHhcChhhhhccCC
Q psy3253         230 SEMLNHEFIQRHDTD  244 (251)
Q Consensus       230 ~evl~hp~~~~~~~~  244 (251)
                      +|+++|+||.+...+
T Consensus       261 ~e~~~~~~~~~~~~~  275 (284)
T cd06620         261 QQLCAMPPFIQALRA  275 (284)
T ss_pred             HHHhcCccccccccc
Confidence            999999999765433

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=100.00  E-value=7.6e-37  Score=252.49  Aligned_cols=201  Identities=32%  Similarity=0.600  Sum_probs=167.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      ++++||||+++++.+.+....++|+||+.+++|.+++..   ....+++..++.++.|++.||.|||+.|++|+|+|   
T Consensus        57 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~---  133 (260)
T cd08222          57 SKLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLK---  133 (260)
T ss_pred             HhCCCCcHHHHHHHHhcCCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCC---
Confidence            567999999999999988899999999999999998863   34578999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                    |+||+++. +.++++|||.+..............++..|+|||.+.+..+
T Consensus       134 ------------------------------~~nili~~-~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~  182 (260)
T cd08222         134 ------------------------------AKNIFLKN-NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGY  182 (260)
T ss_pred             ------------------------------hhheEeec-CCEeecccCceeecCCCcccccCCCCCcCccCHHHHccCCC
Confidence                                          66777654 45999999998765433333334456788999999988888


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +.++|+||+|+++|++++|..||...........+.....+.  .+..++.++.++|.+||+.+|++||+++|+++||||
T Consensus       183 ~~~~Dv~slG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  260 (260)
T cd08222         183 DSKSDIWSLGCILYEMCCLAHAFEGQNFLSVVLRIVEGPTPS--LPETYSRQLNSIMQSMLNKDPSLRPSAAEILRNPFI  260 (260)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCC--CcchhcHHHHHHHHHHhcCChhhCcCHHHHhhCCCC
Confidence            999999999999999999999997655544444433332222  245678999999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=100.00  E-value=2e-36  Score=250.00  Aligned_cols=199  Identities=23%  Similarity=0.405  Sum_probs=166.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.+....++||||+.+++|.+++... ...+++..+..++.|++.||.|||++|++|+|||    
T Consensus        56 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~----  131 (261)
T cd05148          56 LKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLA----  131 (261)
T ss_pred             HhcCCCcchhheeeeEecCCCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccC----
Confidence            46789999999999999999999999999999999999743 3568999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||.+..............++..|+|||.+....++
T Consensus       132 -----------------------------~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~  182 (261)
T cd05148         132 -----------------------------ARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFS  182 (261)
T ss_pred             -----------------------------cceEEEcCCceEEEccccchhhcCCccccccCCCCceEecCHHHHccCCCC
Confidence                                         888888889999999999997654332222233345679999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .++|+||||+++|++++ |..||...........+....  ....+..+++.+.+++.+||+.||++|||++++++
T Consensus       183 ~~~DiwslG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~  256 (261)
T cd05148         183 TKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYDQITAGY--RMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALRE  256 (261)
T ss_pred             chhhHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHhCC--cCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence            99999999999999998 899997766555444443332  22335677899999999999999999999999974

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=100.00  E-value=1.2e-36  Score=255.78  Aligned_cols=210  Identities=26%  Similarity=0.433  Sum_probs=162.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.++...|+||||+. ++|.+++.... ..+++..+..++.||+.||.|||++|++|+||+    
T Consensus        55 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~----  129 (294)
T PLN00009         55 LKEMQHGNIVRLQDVVHSEKRLYLVFEYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLK----  129 (294)
T ss_pred             HHhccCCCEeeEEEEEecCCeEEEEEeccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC----
Confidence            357899999999999999999999999995 58888775333 236888899999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCC-CCCeEecccccccccCccccccccccccccccccccccc-CC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IG  157 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~  157 (251)
                                                   |+||+++. ++.+||+|||++..............++..|+|||.+.+ ..
T Consensus       130 -----------------------------p~nill~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  180 (294)
T PLN00009        130 -----------------------------PQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRH  180 (294)
T ss_pred             -----------------------------cceEEEECCCCEEEEcccccccccCCCccccccCceeecccCHHHHhCCCC
Confidence                                         77888764 456899999999654332222223345778999998865 45


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CCCC-----------------CCC------CCCCCCCHHH
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TKPP-----------------PSF------REPDVWTPEF  211 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~~~-----------------~~~------~~~~~~~~~~  211 (251)
                      ++.++|+||+|+++|++++|.+||...+.......+.   ....                 +.+      ......++++
T Consensus       181 ~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (294)
T PLN00009        181 YSTPVDIWSVGCIFAEMVNQKPLFPGDSEIDELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAG  260 (294)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCCChHH
Confidence            7889999999999999999999997654432222110   0000                 000      0123467889


Q ss_pred             HHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         212 IDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       212 ~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      .+++.+||+.+|++||+++++++||||++.+..
T Consensus       261 ~~~i~~~l~~~P~~Rps~~~~l~~~~~~~~~~~  293 (294)
T PLN00009        261 VDLLSKMLRLDPSKRITARAALEHEYFKDLGDA  293 (294)
T ss_pred             HHHHHHHccCChhhCcCHHHHhcCchHhHHhcC
Confidence            999999999999999999999999999987654

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=100.00  E-value=1e-36  Score=265.11  Aligned_cols=199  Identities=25%  Similarity=0.460  Sum_probs=159.4

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC--------------------------------------
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK--------------------------------------   42 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~--------------------------------------   42 (251)
                      +++ +||||+++++++..+...++||||+.+|+|.++++...                                      
T Consensus        93 ~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  172 (375)
T cd05104          93 SYLGNHINIVNLLGACTVGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMK  172 (375)
T ss_pred             HHhcCCcceeeeeeeeccCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcC
Confidence            346 89999999999999999999999999999999986432                                      


Q ss_pred             ------------------------------------CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccccc
Q psy3253          43 ------------------------------------KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRL   86 (251)
Q Consensus        43 ------------------------------------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~   86 (251)
                                                          ..+++..+..++.||+.||.|||+.|++|||||           
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk-----------  241 (375)
T cd05104         173 PGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLA-----------  241 (375)
T ss_pred             CCcccccccccccccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCc-----------
Confidence                                                146788899999999999999999999999988           


Q ss_pred             ccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCCCCcchhH
Q psy3253          87 DYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGYDCVADM  164 (251)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  164 (251)
                                            |+||+++.++.++|+|||++........  ......++..|+|||.+.+..++.++||
T Consensus       242 ----------------------p~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi  299 (375)
T cd05104         242 ----------------------ARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDV  299 (375)
T ss_pred             ----------------------hhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCH
Confidence                                  8888888888899999999975543211  1122234567999999998899999999


Q ss_pred             HHHHHHHHHHHh-CCCCCCCCCcchhhh-hcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         165 WSLGITALEMAE-GKPPYGDIHPMRAIF-MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       165 wslG~~l~~l~~-g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      |||||++|++++ |..||.......... .+....  ....+...+.++.+++.+||+.||++|||++|+++.
T Consensus       300 ~slG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~  370 (375)
T cd05104         300 WSYGILLWEIFSLGSSPYPGMPVDSKFYKMIKEGY--RMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQL  370 (375)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHhCc--cCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence            999999999998 889997654333222 222221  112245568899999999999999999999999853

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=100.00  E-value=1.6e-36  Score=253.23  Aligned_cols=201  Identities=25%  Similarity=0.396  Sum_probs=159.1

Q ss_pred             CCC-CCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           2 QQC-DSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      +++ +|||++++++++.++  ...++||||+. ++|.+++......+++..+..++.|++.||.|||+.|++|||||   
T Consensus        52 ~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~---  127 (282)
T cd07831          52 RRLSPHPNILRLIEVLFDRKTGRLALVFELMD-MNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIK---  127 (282)
T ss_pred             hhcCCCCCccceEEEEecCCCCcEEEEEecCC-ccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCceecccC---
Confidence            345 599999999999877  88999999996 58888887555679999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IG  157 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~  157 (251)
                                                    |+||+++. +.++|+|||.+........ .....++..|+|||.+.. ..
T Consensus       128 ------------------------------p~ni~l~~-~~~kl~dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~  175 (282)
T cd07831         128 ------------------------------PENILIKD-DILKLADFGSCRGIYSKPP-YTEYISTRWYRAPECLLTDGY  175 (282)
T ss_pred             ------------------------------HHHEEEcC-CCeEEEecccccccccCCC-cCCCCCCcccCChhHhhcCCC
Confidence                                          88888888 8999999999976543221 122346788999997744 55


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---C------------CCCCCCCC-----------CCCCCHHH
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---T------------KPPPSFRE-----------PDVWTPEF  211 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~------------~~~~~~~~-----------~~~~~~~~  211 (251)
                      ++.++|+||+||++|+|++|.+||.+.+.......+.   .            .....+..           ...++.++
T Consensus       176 ~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (282)
T cd07831         176 YGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEG  255 (282)
T ss_pred             CCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHcccccHHH
Confidence            7889999999999999999999997654432221110   0            00000000           12457899


Q ss_pred             HHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         212 IDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       212 ~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .++|.+||+.+|++|||++++++||||
T Consensus       256 ~~li~~~l~~~P~~R~~~~~~l~~~~~  282 (282)
T cd07831         256 LDLLKKLLAYDPDERITAKQALRHPYF  282 (282)
T ss_pred             HHHHHHHhccCcccccCHHHHhhCCCC
Confidence            999999999999999999999999997

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=100.00  E-value=5.9e-37  Score=261.85  Aligned_cols=213  Identities=25%  Similarity=0.423  Sum_probs=170.3

Q ss_pred             CCCCCCCccceeeeeEeeCC-----eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT-----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~-----~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      |++++||||+++++++....     ..|++|||+. ++|.+++. +...+++..++.++.|++.||.+||+.|++|||||
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~-~~~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlk  130 (330)
T cd07834          53 LRHLRHENIIGLLDILRPPSPEDFNDVYIVTELME-TDLHKVIK-SPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLK  130 (330)
T ss_pred             HHhcCCcchhhhhhhhcccCcccccceEEEecchh-hhHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            35789999999999997765     7999999996 58999886 44589999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc---ccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM---AKRNTVIGTPFWMAPEV  152 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~~y~aPE~  152 (251)
                                                       |+||+++.++.++|+|||.+.......   .......++..|+|||.
T Consensus       131 ---------------------------------p~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  177 (330)
T cd07834         131 ---------------------------------PSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPEL  177 (330)
T ss_pred             ---------------------------------HHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCcee
Confidence                                             889999999999999999997655432   12233456788999999


Q ss_pred             cccC-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC---C------------------------CC-CCC
Q psy3253         153 IQEI-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP---P------------------------PS-FRE  203 (251)
Q Consensus       153 ~~~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~---~------------------------~~-~~~  203 (251)
                      +.+. .++.++|+||+|+++|++++|.+||.+.+.......+....   .                        .. ...
T Consensus       178 ~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (330)
T cd07834         178 LLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKL  257 (330)
T ss_pred             eecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHh
Confidence            9877 78999999999999999999999997654432221111100   0                        00 001


Q ss_pred             CCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCCCC
Q psy3253         204 PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQN  248 (251)
Q Consensus       204 ~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~~~  248 (251)
                      ....+.++.+++.+||+.+|++|||++++++||||++...++.+.
T Consensus       258 ~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~~~~~  302 (330)
T cd07834         258 FPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDPEDEP  302 (330)
T ss_pred             cccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcccccCC
Confidence            233678899999999999999999999999999999877765443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=100.00  E-value=3.7e-36  Score=246.94  Aligned_cols=202  Identities=42%  Similarity=0.739  Sum_probs=169.5

Q ss_pred             CCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      ++++||||+++++.+...  ...++++||+.+++|.+++... ..+++..+..++.|++.||.|||+.|++|+||+    
T Consensus        54 ~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~----  128 (260)
T cd06606          54 SSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKF-GKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIK----  128 (260)
T ss_pred             HHcCCCCEeeEEEEEecCCCCeEEEEEEecCCCcHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC----
Confidence            578999999999999888  8899999999999999999743 489999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                   |+||+++.++.++|+|||.+........  ......++..|.|||.+....
T Consensus       129 -----------------------------p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~  179 (260)
T cd06606         129 -----------------------------GANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEE  179 (260)
T ss_pred             -----------------------------HHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCC
Confidence                                         8888988899999999999976654422  123345778899999998888


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCC-cchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIH-PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      .+.++|+||+|++++++++|..||...+ .......+.. .......+...+..+.+++.+||..+|++||++.|++.||
T Consensus       180 ~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~~~  258 (260)
T cd06606         180 YGRAADIWSLGCTVIEMATGKPPWSELGNPMAALYKIGS-SGEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQHP  258 (260)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHhccc-cCCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhhCC
Confidence            9999999999999999999999997665 2222222222 1122234566789999999999999999999999999999


Q ss_pred             hh
Q psy3253         237 FI  238 (251)
Q Consensus       237 ~~  238 (251)
                      ||
T Consensus       259 ~~  260 (260)
T cd06606         259 FL  260 (260)
T ss_pred             CC
Confidence            97

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=100.00  E-value=3e-36  Score=251.91  Aligned_cols=199  Identities=23%  Similarity=0.433  Sum_probs=164.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC--------------CCCCHHHHHHHHHHHHHHHHHHHh
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK--------------KTLSEDEIATILCDTLKGLEYLHL   66 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~--------------~~l~~~~~~~~~~~i~~~l~~LH~   66 (251)
                      |+.++||||+++++++.++...+++|||+.+++|.+++....              ..+++..++.++.|++.||.|||+
T Consensus        61 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~  140 (280)
T cd05092          61 LTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLAS  140 (280)
T ss_pred             HhcCCCCCCceEEEEEecCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999997432              247899999999999999999999


Q ss_pred             CCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccc
Q psy3253          67 RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGT  144 (251)
Q Consensus        67 ~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~  144 (251)
                      .|++|||||                                 |+||+++.++.++|+|||++........  ......++
T Consensus       141 ~~i~H~dlk---------------------------------p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~  187 (280)
T cd05092         141 LHFVHRDLA---------------------------------TRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLP  187 (280)
T ss_pred             CCeeccccc---------------------------------HhhEEEcCCCCEEECCCCceeEcCCCceeecCCCcccc
Confidence            999999988                                 8888888889999999999865432211  11222346


Q ss_pred             cccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCc
Q psy3253         145 PFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP  223 (251)
Q Consensus       145 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  223 (251)
                      ..|+|||.+.+..++.++|||||||++|++++ |.+||...........+.....  ...+..+++.+.+++.+||+.||
T Consensus       188 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~~P  265 (280)
T cd05092         188 IRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQGRE--LERPRTCPPEVYAIMQGCWQREP  265 (280)
T ss_pred             ccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHHHHHHHHcCcc--CCCCCCCCHHHHHHHHHHccCCh
Confidence            67999999988889999999999999999998 9999976655554444433322  23356789999999999999999


Q ss_pred             CccCCHHHHhc
Q psy3253         224 EERATASEMLN  234 (251)
Q Consensus       224 ~~Rps~~evl~  234 (251)
                      ++||+++|+++
T Consensus       266 ~~Rp~~~~l~~  276 (280)
T cd05092         266 QQRMVIKDIHS  276 (280)
T ss_pred             hhCCCHHHHHH
Confidence            99999999974

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.9e-36  Score=246.67  Aligned_cols=201  Identities=43%  Similarity=0.783  Sum_probs=171.1

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++|||++++++++.++...+++|||+++++|.+++. ....+++..+..++.|++.||.+||+.|++|||||      
T Consensus        54 ~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~-~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~------  126 (254)
T cd06627          54 KNLKHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIK-KFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIK------  126 (254)
T ss_pred             HhCCCCCccEEEEEEEeCCEEEEEEecCCCCcHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC------
Confidence            57899999999999999999999999999999999987 34789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||.+..............++..|+|||...+..++.+
T Consensus       127 ---------------------------p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~  179 (254)
T cd06627         127 ---------------------------AANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTA  179 (254)
T ss_pred             ---------------------------HHHEEECCCCCEEEeccccceecCCCcccccccccchhhcCHhhhcCCCCCcc
Confidence                                       88888888899999999999766543332333456788999999988778899


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +|+||+|+++|++++|..||..................  ..+..++..+.+++.+||+.+|++|||++|++.||||
T Consensus       180 ~Dv~~lG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~~  254 (254)
T cd06627         180 SDIWSLGCTVIELLTGNPPYYDLNPMAALFRIVQDDHP--PLPEGISPELKDFLMQCFQKDPNLRPTAKQLLKHPWI  254 (254)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHhccCCC--CCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhcCCCC
Confidence            99999999999999999999766554444333322222  2355678999999999999999999999999999997

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=100.00  E-value=1.3e-36  Score=248.29  Aligned_cols=192  Identities=22%  Similarity=0.308  Sum_probs=159.8

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcc
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV   82 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~   82 (251)
                      ...||||+++++++.+....+++|||+.+|+|.+++. ....+++..+..++.|++.||.|||++|++|||||       
T Consensus        41 ~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlk-------  112 (237)
T cd05576          41 PHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHIS-KFLNIPEECVKRWAAEMVVALDALHREGIVCRDLN-------  112 (237)
T ss_pred             hcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-------
Confidence            3469999999999999999999999999999999986 34569999999999999999999999999999988       


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcch
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA  162 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  162 (251)
                                                |+||+++.++.++++|||.+......   .....++..|+|||.+.+..++.++
T Consensus       113 --------------------------p~Nil~~~~~~~~l~df~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~  163 (237)
T cd05576         113 --------------------------PNNILLDDRGHIQLTYFSRWSEVEDS---CDGEAVENMYCAPEVGGISEETEAC  163 (237)
T ss_pred             --------------------------HHHEEEcCCCCEEEecccchhccccc---cccCCcCccccCCcccCCCCCCchh
Confidence                                      88999998999999999987654332   1223346679999999888889999


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH-----HHHhcChh
Q psy3253         163 DMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA-----SEMLNHEF  237 (251)
Q Consensus       163 DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~-----~evl~hp~  237 (251)
                      |+||+|+++|++++|..|+......     +..  ......+..+++.+.+++.+||+.||++|+++     +|+++|||
T Consensus       164 DvwslG~il~el~~g~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h~~  236 (237)
T cd05576         164 DWWSLGAILFELLTGKTLVECHPSG-----INT--HTTLNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPF  236 (237)
T ss_pred             hHHHHHHHHHHHHHCcchhhcCchh-----ccc--ccccCCcccCCHHHHHHHHHHccCCHHHhcCCCccchHHHHcCCC
Confidence            9999999999999999887532111     000  01122345678999999999999999999986     99999999


Q ss_pred             h
Q psy3253         238 I  238 (251)
Q Consensus       238 ~  238 (251)
                      |
T Consensus       237 ~  237 (237)
T cd05576         237 F  237 (237)
T ss_pred             C
Confidence            7

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=100.00  E-value=3.1e-36  Score=252.04  Aligned_cols=200  Identities=22%  Similarity=0.431  Sum_probs=164.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC----------------CCCCHHHHHHHHHHHHHHHHHH
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK----------------KTLSEDEIATILCDTLKGLEYL   64 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~----------------~~l~~~~~~~~~~~i~~~l~~L   64 (251)
                      |++++||||+++++++..+...|++|||+.+++|.+++....                ..+++..+..++.|++.||.||
T Consensus        61 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~l  140 (283)
T cd05090          61 MAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYL  140 (283)
T ss_pred             HhhCCCCCeeeEEEEEecCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999985321                2478889999999999999999


Q ss_pred             HhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccc
Q psy3253          65 HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVI  142 (251)
Q Consensus        65 H~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~  142 (251)
                      |++|++|||||                                 |+||+++.++.++|+|||++........  ......
T Consensus       141 H~~~i~H~dlk---------------------------------p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  187 (283)
T cd05090         141 SSHFFVHKDLA---------------------------------ARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSL  187 (283)
T ss_pred             HhcCeehhccc---------------------------------cceEEEcCCCcEEeccccccccccCCcceecccCCC
Confidence            99999999988                                 8888888888999999999976532211  122233


Q ss_pred             cccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhc
Q psy3253         143 GTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVK  221 (251)
Q Consensus       143 ~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  221 (251)
                      ++..|+|||.+.+..++.++|+||||+++|+|++ |..||.+.........+.....  ...+..+++.+.+++.+||+.
T Consensus       188 ~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~  265 (283)
T cd05090         188 LPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQEVIEMVRKRQL--LPCSEDCPPRMYSLMTECWQE  265 (283)
T ss_pred             ccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCc--CCCCCCCCHHHHHHHHHHccc
Confidence            4567999999988889999999999999999998 9999977655444444433322  223566899999999999999


Q ss_pred             CcCccCCHHHHhcC
Q psy3253         222 NPEERATASEMLNH  235 (251)
Q Consensus       222 ~p~~Rps~~evl~h  235 (251)
                      ||++||++++++++
T Consensus       266 ~p~~Rp~~~~i~~~  279 (283)
T cd05090         266 GPSRRPRFKDIHTR  279 (283)
T ss_pred             CcccCcCHHHHHHH
Confidence            99999999999764

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=2.7e-36  Score=250.02  Aligned_cols=200  Identities=19%  Similarity=0.281  Sum_probs=153.8

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++..+...+++|||+++|+|..++......+++..++.++.||+.||.|||++|++||||||+|||+
T Consensus        59 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill  138 (262)
T cd05077          59 RQVSHKHIVLLYGVCVRDVENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNILL  138 (262)
T ss_pred             HhCCCCCEeeEEEEEecCCCCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEE
Confidence            57899999999999999889999999999999999987556779999999999999999999999999999999555554


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc-cCCCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-EIGYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~~~  160 (251)
                      .                          ..+.-......++++|||.+......    ....++..|+|||.+. +..++.
T Consensus       139 ~--------------------------~~~~~~~~~~~~~l~d~g~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~  188 (262)
T cd05077         139 A--------------------------REGIDGECGPFIKLSDPGIPITVLSR----QECVERIPWIAPECVEDSKNLSI  188 (262)
T ss_pred             e--------------------------cCCccCCCCceeEeCCCCCCccccCc----ccccccccccChhhhcCCCCCCc
Confidence            3                          11111111223899999998654322    2234677899999986 466888


Q ss_pred             chhHHHHHHHHHHHH-hCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         161 VADMWSLGITALEMA-EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~-~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++|||||||++|+++ +|..||........... ...   ........+.++.+++.+||+.||++||++++++++
T Consensus       189 ~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~  260 (262)
T cd05077         189 AADKWSFGTTLWEICYNGEIPLKDKTLAEKERF-YEG---QCMLVTPSCKELADLMTHCMNYDPNQRPFFRAIMRD  260 (262)
T ss_pred             hhHHHHHHHHHHHHHhCCCCCCCCcchhHHHHH-Hhc---CccCCCCChHHHHHHHHHHcCCChhhCcCHHHHHHh
Confidence            999999999999997 58888865543322211 111   111123346789999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>KOG0603|consensus

Probab=100.00  E-value=9.3e-37  Score=266.61  Aligned_cols=197  Identities=29%  Similarity=0.454  Sum_probs=165.2

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      -+||||+++++++.++.+.|+|||.+.|+-|.+-+. ....+. .++..|+.+|+.|+.|||++|++|||+|        
T Consensus       373 ~~h~niv~~~~v~~~~~~~~~v~e~l~g~ell~ri~-~~~~~~-~e~~~w~~~lv~Av~~LH~~gvvhRDLk--------  442 (612)
T KOG0603|consen  373 RDHPNIVKSHDVYEDGKEIYLVMELLDGGELLRRIR-SKPEFC-SEASQWAAELVSAVDYLHEQGVVHRDLK--------  442 (612)
T ss_pred             cCCCcceeecceecCCceeeeeehhccccHHHHHHH-hcchhH-HHHHHHHHHHHHHHHHHHhcCeeecCCC--------
Confidence            479999999999999999999999999998887776 233444 8888999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceec-CCCCCeEecccccccccCcccccccccccccccccccccccCCCCcch
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILL-NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA  162 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~-~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  162 (251)
                                               |+||++ +..++++|+|||.++.....   .....-|..|.|||++...++++++
T Consensus       443 -------------------------p~NIL~~~~~g~lrltyFG~a~~~~~~---~~tp~~t~~y~APEvl~~~~yt~ac  494 (612)
T KOG0603|consen  443 -------------------------PGNILLDGSAGHLRLTYFGFWSELERS---CDTPALTLQYVAPEVLAIQEYTEAC  494 (612)
T ss_pred             -------------------------hhheeecCCCCcEEEEEechhhhCchh---hcccchhhcccChhhhccCCCCcch
Confidence                                     888888 58889999999999765543   2233457789999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         163 DMWSLGITALEMAEGKPPYGDIHPM-RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       163 DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      |+||||+++|+|++|..||...... .....+...   .+  ...+|.++++|+.+||+.||.+|++++|+..||||-..
T Consensus       495 D~WSLGvlLy~ML~G~tp~~~~P~~~ei~~~i~~~---~~--s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~~~~  569 (612)
T KOG0603|consen  495 DWWSLGVLLYEMLTGRTLFAAHPAGIEIHTRIQMP---KF--SECVSDEAKDLLQQLLQVDPALRLGADEIGAHPWFLSH  569 (612)
T ss_pred             hhHHHHHHHHHHHhCCCccccCCchHHHHHhhcCC---cc--ccccCHHHHHHHHHhccCChhhCcChhhhccCcchhcC
Confidence            9999999999999999999665544 333333222   22  26789999999999999999999999999999999444


Q ss_pred             cC
Q psy3253         242 DT  243 (251)
Q Consensus       242 ~~  243 (251)
                      +.
T Consensus       570 ~t  571 (612)
T KOG0603|consen  570 PT  571 (612)
T ss_pred             CC
Confidence            44

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=100.00  E-value=4.8e-36  Score=250.64  Aligned_cols=198  Identities=28%  Similarity=0.441  Sum_probs=162.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +++++||||+++++++. +...++++||+.+|+|.+++......+++..+..++.|++.||.|||++|++|||||     
T Consensus        63 l~~l~h~~iv~~~~~~~-~~~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlk-----  136 (279)
T cd05111          63 MGSLDHAYIVRLLGICP-GASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLA-----  136 (279)
T ss_pred             HhcCCCCCcceEEEEEC-CCccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccC-----
Confidence            35789999999999885 455789999999999999998666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.++|+|||.++.......  ......++..|+|||.+.+..+
T Consensus       137 ----------------------------p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~  188 (279)
T cd05111         137 ----------------------------ARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRY  188 (279)
T ss_pred             ----------------------------cceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCc
Confidence                                        8888998889999999999975532211  1122345667999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|||||||++|++++ |..||.+.........+....  ....+..++.++.+++.+||..||++|||++|+++
T Consensus       189 ~~~~Dv~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~  263 (279)
T cd05111         189 THQSDVWSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEKGE--RLAQPQICTIDVYMVMVKCWMIDENVRPTFKELAN  263 (279)
T ss_pred             CchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCC--cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence            999999999999999998 999997765544333333222  22234557889999999999999999999999986

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=100.00  E-value=1.9e-36  Score=253.43  Aligned_cols=204  Identities=27%  Similarity=0.492  Sum_probs=162.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...+++|||+.++.+..+.. +...+++..+..++.|++.||.|||++|++|+|++     
T Consensus        54 l~~l~~~~i~~~~~~~~~~~~~~iv~e~~~~~~l~~~~~-~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~-----  127 (288)
T cd07833          54 LRQLRHENIVNLKEAFRRKGRLYLVFEYVERTLLELLEA-SPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIK-----  127 (288)
T ss_pred             HHhcCCCCeeehhheEEECCEEEEEEecCCCCHHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----
Confidence            357889999999999999999999999998866665554 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccC-CC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEI-GY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~-~~  158 (251)
                                                  |+||+++.++.++|+|||.+........ ......++..|+|||.+.+. .+
T Consensus       128 ----------------------------~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~  179 (288)
T cd07833         128 ----------------------------PENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNY  179 (288)
T ss_pred             ----------------------------HHHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcCCchhcCCCCc
Confidence                                        8899999999999999999876544322 22234567789999999877 78


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC--------------------C-CCCC--------CCCCCCCCH
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT--------------------K-PPPS--------FREPDVWTP  209 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~--------------------~-~~~~--------~~~~~~~~~  209 (251)
                      +.++|+||+|+++|++++|.+||.+.........+..                    . ....        ...+..++.
T Consensus       180 ~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (288)
T cd07833         180 GKPVDVWAIGCIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSS  259 (288)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcCCccch
Confidence            8999999999999999999999965433221111000                    0 0000        001233588


Q ss_pred             HHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         210 EFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       210 ~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      ++.++|.+||..+|++|||++++++||||
T Consensus       260 ~~~~li~~~l~~~p~~Rps~~~il~~~~f  288 (288)
T cd07833         260 PALDFLKACLRMDPKERLTCDELLQHPYF  288 (288)
T ss_pred             HHHHHHHHHhccCchhcccHHHHhcCCCC
Confidence            89999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>PHA03210 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=1.6e-36  Score=272.69  Aligned_cols=209  Identities=21%  Similarity=0.269  Sum_probs=158.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK----KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~----~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      |++++||||+++++++...+..|++++++. ++|.+++....    .......++.++.||+.||.|||++||+||||| 
T Consensus       217 l~~l~HpnIv~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLK-  294 (501)
T PHA03210        217 LGRLNHENILKIEEILRSEANTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIK-  294 (501)
T ss_pred             HHhCCCCCcCcEeEEEEECCeeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCC-
Confidence            357899999999999999999999999995 57877775221    223466788899999999999999999999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-ccccccccccccccccccc
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~  155 (251)
                                                      |+||+++.++.+||+|||+++....... ......|+..|+|||++.+
T Consensus       295 --------------------------------P~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~  342 (501)
T PHA03210        295 --------------------------------LENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAG  342 (501)
T ss_pred             --------------------------------HHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcC
Confidence                                            8899999999999999999976543221 2233568999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCC-CCCCCcc--hhhhh-cC--CCCCCC--------------------------CCC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPP-YGDIHPM--RAIFM-IP--TKPPPS--------------------------FRE  203 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p-~~~~~~~--~~~~~-~~--~~~~~~--------------------------~~~  203 (251)
                      ..++.++|||||||++|+|++|..+ +......  ..... +.  ......                          ...
T Consensus       343 ~~~~~~~DiwSlGvil~ell~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~  422 (501)
T PHA03210        343 DGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIR  422 (501)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCccCCCCCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHH
Confidence            8999999999999999999998754 4322111  11100 00  000000                          000


Q ss_pred             CCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         204 PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       204 ~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                      ...++.++.++|.+||++||++|||++|+|+||||.....
T Consensus       423 ~~~~~~~~~~li~kmL~~DP~~Rpsa~elL~hp~f~~~~~  462 (501)
T PHA03210        423 NLGLPADFEYPLVKMLTFDWHLRPGAAELLALPLFSAEEE  462 (501)
T ss_pred             hcCCChHHHHHHHHHhccCcccCcCHHHHhhChhhhcCCc
Confidence            1234677889999999999999999999999999987543

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=100.00  E-value=1.7e-36  Score=261.57  Aligned_cols=206  Identities=25%  Similarity=0.452  Sum_probs=161.2

Q ss_pred             CCCCCCCccceeeeeEeeC------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |++++||||++++++|...      .+.|+||||+. ++|.+.+..   .+++..+..++.|++.||.|||++|++||||
T Consensus        69 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~---~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dl  144 (353)
T cd07850          69 MKLVNHKNIIGLLNVFTPQKSLEEFQDVYLVMELMD-ANLCQVIQM---DLDHERMSYLLYQMLCGIKHLHSAGIIHRDL  144 (353)
T ss_pred             HHhcCCCCCcceeeeeccCCCccccCcEEEEEeccC-CCHHHHHhh---cCCHHHHHHHHHHHHHHHHHHHhCCeeeCCC
Confidence            3578999999999988643      35799999995 588888752   3899999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                      |                                 |+||+++.++.++|+|||.+...... .......++..|+|||.+.
T Consensus       145 k---------------------------------p~Nil~~~~~~~kL~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~  190 (353)
T cd07850         145 K---------------------------------PSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVIL  190 (353)
T ss_pred             C---------------------------------HHHEEECCCCCEEEccCccceeCCCC-CCCCCCcccccccCHHHHh
Confidence            8                                 88999999999999999999765432 1222345678899999999


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC-----------------------CCC---CCC-------
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT-----------------------KPP---PSF-------  201 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~-----------------------~~~---~~~-------  201 (251)
                      +..++.++|+||+||++|+|++|..||...+.......+..                       ...   ..+       
T Consensus       191 ~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (353)
T cd07850         191 GMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDV  270 (353)
T ss_pred             CCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCccc
Confidence            98999999999999999999999999965543221111100                       000   000       


Q ss_pred             -------CCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         202 -------REPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       202 -------~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                             ......++++.++|.+||+.||++|||++|+|.||||+...++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~~~~~~~~~~  320 (353)
T cd07850         271 LFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYINVWYDP  320 (353)
T ss_pred             ccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcChhHhhccCC
Confidence                   0012346678999999999999999999999999999865443

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=100.00  E-value=5.7e-36  Score=254.33  Aligned_cols=203  Identities=48%  Similarity=0.878  Sum_probs=168.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||++++++++.+....|+||||+. |+|.+++......+++.++..++.|++.||.|||++|++|+||+     
T Consensus        75 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~-----  148 (313)
T cd06633          75 LQQLKHPNTIEYKGCYLKEHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIK-----  148 (313)
T ss_pred             HHhCCCCCCccEEEEEEeCCEEEEEEecCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----
Confidence            357899999999999999999999999995 58888887666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc---cCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---EIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~  157 (251)
                                                  |+||+++.++.++|+|||++.....    .....++..|+|||.+.   ...
T Consensus       149 ----------------------------p~nili~~~~~~kL~dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~  196 (313)
T cd06633         149 ----------------------------AGNILLTEPGQVKLADFGSASKSSP----ANSFVGTPYWMAPEVILAMDEGQ  196 (313)
T ss_pred             ----------------------------hhhEEECCCCCEEEeecCCCcccCC----CCCccccccccChhhccccCCCC
Confidence                                        8888888889999999999854322    22345788899999984   356


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      ++.++|+||+|+++|++++|..||...+.......+.....+.. ....++..+.+++.+||+.+|++||+++++++|||
T Consensus       197 ~~~~sDv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~~~  275 (313)
T cd06633         197 YDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTL-QSNEWTDSFRGFVDYCLQKIPQERPASAELLRHDF  275 (313)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCC-CccccCHHHHHHHHHHccCChhhCcCHHHHhcCcc
Confidence            78899999999999999999999977665444443333222222 23456788999999999999999999999999999


Q ss_pred             hhhcc
Q psy3253         238 IQRHD  242 (251)
Q Consensus       238 ~~~~~  242 (251)
                      |+..+
T Consensus       276 ~~~~~  280 (313)
T cd06633         276 VRRDR  280 (313)
T ss_pred             cCCCc
Confidence            98754

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=100.00  E-value=2e-36  Score=248.20  Aligned_cols=200  Identities=34%  Similarity=0.582  Sum_probs=170.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++.+..+...|++|||+.+++|.+++. ....+++..+..++.|++.||.|||+.+++|+||+      
T Consensus        48 ~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~-~~~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~------  120 (250)
T cd05123          48 SRINHPFIVKLHYAFQTEEKLYLVLEYAPGGELFSHLS-KEGRFSEERARFYAAEIVLALEYLHSLGIIYRDLK------  120 (250)
T ss_pred             HHcCCCcHHHHHHHeecCCeeEEEEecCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC------
Confidence            56889999999999999999999999999999999997 34578999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||.+..............++..|+|||...+...+.+
T Consensus       121 ---------------------------p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~  173 (250)
T cd05123         121 ---------------------------PENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKA  173 (250)
T ss_pred             ---------------------------cceEEEcCCCcEEEeecCcceecccCCCcccCCcCCccccChHHhCCCCCCch
Confidence                                       88888888899999999998765433223334456778999999988888999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH---HHHhcChhh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA---SEMLNHEFI  238 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~---~evl~hp~~  238 (251)
                      +|+||||+++|++++|..||...+.......+...   ....+...+..+.+++.+||..||++||++   +++++||||
T Consensus       174 ~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~~~~l~~~~~f  250 (250)
T cd05123         174 VDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKILKD---PLRFPEFLSPEARDLISGLLQKDPTKRLGSGGAEEIKAHPFF  250 (250)
T ss_pred             hhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcC---CCCCCCCCCHHHHHHHHHHhcCCHhhCCCcccHHHHHhCCCC
Confidence            99999999999999999999766654433333332   333456678999999999999999999999   999999998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=100.00  E-value=5e-36  Score=246.11  Aligned_cols=199  Identities=27%  Similarity=0.437  Sum_probs=164.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++......++||||+.+++|.+++......+++..+..++.+++.||.|+|++|++|||||     
T Consensus        46 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~-----  120 (250)
T cd05085          46 LKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLA-----  120 (250)
T ss_pred             HHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccC-----
Confidence            356899999999999999999999999999999999997556678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc-cccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR-NTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++++|||++.......... ....++..|+|||.+.+..++
T Consensus       121 ----------------------------p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  172 (250)
T cd05085         121 ----------------------------ARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYS  172 (250)
T ss_pred             ----------------------------hheEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCHHHhccCCCC
Confidence                                        888888888899999999986543221111 112234569999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .++|+||+|+++|++++ |..||...........+.....  ...+..++..+.+++.+||..+|++||+++|+++
T Consensus       173 ~~~Di~slG~ll~~~~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  246 (250)
T cd05085         173 SESDVWSYGILLWETFSLGVCPYPGMTNQQAREQVEKGYR--MSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQK  246 (250)
T ss_pred             chhHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCCC--CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence            99999999999999998 9999976655444443333322  2235567899999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=100.00  E-value=1.8e-36  Score=254.63  Aligned_cols=203  Identities=25%  Similarity=0.459  Sum_probs=157.6

Q ss_pred             CC-CCCccceeeeeEeeCCe-----EEEEEEccCCCCHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy3253           3 QC-DSPYVVKYYGSYFKNTD-----LWIVMEYCGAGSVSDIMRLRK----KTLSEDEIATILCDTLKGLEYLHLRRKIHR   72 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~~~-----~~lv~e~~~~gsL~~~~~~~~----~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~   72 (251)
                      ++ +||||+++++++.....     .|+||||+.+ +|.+++....    ..+++..++.++.||+.||.|||++|++||
T Consensus        56 ~l~~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~  134 (295)
T cd07837          56 MLSESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHR  134 (295)
T ss_pred             HccCCCCccceeeeEeecCCCCCceEEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeec
Confidence            45 57999999999987665     8999999975 8988886432    358999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCC-CCCeEecccccccccCccccccccccccccccccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPE  151 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  151 (251)
                      |||                                 |+||+++. ++.++|+|||.+..............+++.|+|||
T Consensus       135 dl~---------------------------------~~nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE  181 (295)
T cd07837         135 DLK---------------------------------PQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPE  181 (295)
T ss_pred             CCC---------------------------------hHHEEEecCCCeEEEeecccceecCCCccccCCcccccCCCChH
Confidence            988                                 77888887 78899999999875543222222334577899999


Q ss_pred             cccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC----CCC---------------CCC------CCCC
Q psy3253         152 VIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT----KPP---------------PSF------REPD  205 (251)
Q Consensus       152 ~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~----~~~---------------~~~------~~~~  205 (251)
                      .+.+ ..++.++|+||+|+++|+|++|..||.+.+.......+..    ...               +..      ....
T Consensus       182 ~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (295)
T cd07837         182 VLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVP  261 (295)
T ss_pred             HhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhcc
Confidence            8854 4578899999999999999999999976544332211100    000               000      0013


Q ss_pred             CCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhh
Q psy3253         206 VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ  239 (251)
Q Consensus       206 ~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~  239 (251)
                      .++.++.++|.+||+.||++||+++|++.||||+
T Consensus       262 ~~~~~~~~~i~~~l~~~P~~R~~~~eil~~~~~~  295 (295)
T cd07837         262 DLSPEGLDLLQKMLRYDPAKRISAKAALTHPYFD  295 (295)
T ss_pred             ccCHHHHHHHHHHccCChhhcCCHHHHhcCCCcC
Confidence            4688899999999999999999999999999985

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=100.00  E-value=2.9e-36  Score=252.73  Aligned_cols=208  Identities=38%  Similarity=0.723  Sum_probs=163.0

Q ss_pred             CC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHH----HhCCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCC
Q psy3253           3 QC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR----LRKKTLSEDEIATILCDTLKGLEYLHLR-RKIHRDIKA   76 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~----~~~~~l~~~~~~~~~~~i~~~l~~LH~~-~iiH~dik~   76 (251)
                      ++ +||||+++++++..+...+++|||+. ++|.++..    .....+++..+..++.|++.||+|||+. |++||||| 
T Consensus        58 ~~~~~~~iv~~~~~~~~~~~~~~~~e~~~-~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlk-  135 (288)
T cd06616          58 RSSDCPYIVKFYGALFREGDCWICMELMD-ISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVK-  135 (288)
T ss_pred             HhcCCCCEeeeeeEEecCCcEEEEEeccc-CCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCC-
Confidence            44 49999999999999889999999995 46665442    1246799999999999999999999974 99999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccC
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI  156 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  156 (251)
                                                      |+||+++.++.++|+|||++....... ......++..|+|||.+.+.
T Consensus       136 --------------------------------p~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~  182 (288)
T cd06616         136 --------------------------------PSNILLDRNGNIKLCDFGISGQLVDSI-AKTRDAGCRPYMAPERIDPS  182 (288)
T ss_pred             --------------------------------HHHEEEccCCcEEEeecchhHHhccCC-ccccccCccCccCHHHhccc
Confidence                                            888888888899999999986544321 12233567889999999765


Q ss_pred             ---CCCcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhcCCCCCCCC--CCCCCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         157 ---GYDCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFMIPTKPPPSF--REPDVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       157 ---~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                         .++.++|+||+||++|++++|+.||...... ...........+..  ..+..++.++.+|+.+||+.+|++|||++
T Consensus       183 ~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~  262 (288)
T cd06616         183 ARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYK  262 (288)
T ss_pred             cccCCcchhhhhHHHHHHHHHHhCCCCchhcchHHHHHhhhcCCCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHH
Confidence               6889999999999999999999999655421 11122222211111  12235789999999999999999999999


Q ss_pred             HHhcChhhhhccCCC
Q psy3253         231 EMLNHEFIQRHDTDP  245 (251)
Q Consensus       231 evl~hp~~~~~~~~~  245 (251)
                      |+++||||+...+..
T Consensus       263 ~i~~~~~~~~~~~~~  277 (288)
T cd06616         263 ELLEHPFIKDYEERN  277 (288)
T ss_pred             HHhcChhhhchhhcc
Confidence            999999998866543

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=100.00  E-value=1.8e-36  Score=253.23  Aligned_cols=203  Identities=26%  Similarity=0.442  Sum_probs=161.5

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      ++++|||++++++++.++...|++|||++ ++|.+++.... ..+++..++.++.|++.||.|||+++++||||+     
T Consensus        53 ~~l~~~~iv~~~~~~~~~~~~~iv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~-----  126 (283)
T cd07835          53 KELNHPNIVRLLDVVHSENKLYLVFEFLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLK-----  126 (283)
T ss_pred             HhcCCCCccCHhheeccCCeEEEEEeccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCC-----
Confidence            56799999999999999999999999995 69999986433 368999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccC-CCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~  159 (251)
                                                  |+||+++.++.++|+|||.+..............++..|+|||.+.+. .++
T Consensus       127 ----------------------------p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  178 (283)
T cd07835         127 ----------------------------PQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQYS  178 (283)
T ss_pred             ----------------------------HHHEEEcCCCcEEEeecccccccCCCccccCccccccCCCCCceeecCcccC
Confidence                                        889999889999999999997554322222233457789999988653 568


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC-------------------------CCC-CCCCCCCCCCCHHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP-------------------------TKP-PPSFREPDVWTPEFID  213 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~-------------------------~~~-~~~~~~~~~~~~~~~~  213 (251)
                      .++|+||+|+++|++++|.+||...+.......+.                         ... .........++.++.+
T Consensus       179 ~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (283)
T cd07835         179 TPVDIWSIGCIFAEMVNRRPLFPGDSEIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLD  258 (283)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCHHHHH
Confidence            89999999999999999999996554322111100                         000 0001113456789999


Q ss_pred             HHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         214 FVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       214 li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      ++.+||+.+|++|||++|++.||||
T Consensus       259 li~~~l~~~P~~Rpt~~~il~~~~~  283 (283)
T cd07835         259 LLSKMLVYDPAKRISAKAALQHPYF  283 (283)
T ss_pred             HHHHHhcCChhhCcCHHHHhcCCCC
Confidence            9999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG0196|consensus

Probab=100.00  E-value=8.8e-38  Score=277.40  Aligned_cols=200  Identities=27%  Similarity=0.451  Sum_probs=178.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |-|++||||++|.|+.......++|.|||++|+|+.|++++.+.|+.-+...+++-|+.|++||-++|++||||-     
T Consensus       684 MGQFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLA-----  758 (996)
T KOG0196|consen  684 MGQFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLA-----  758 (996)
T ss_pred             cccCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhh-----
Confidence            679999999999999999999999999999999999999999999999999999999999999999999999966     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc-ccccc--ccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR-NTVIG--TPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~--~~~y~aPE~~~~~~  157 (251)
                                                  .+||+++.+..+|++|||+++...++.... ....|  +.+|.|||.+...+
T Consensus       759 ----------------------------ARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RK  810 (996)
T KOG0196|consen  759 ----------------------------ARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRK  810 (996)
T ss_pred             ----------------------------hhheeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcc
Confidence                                        889999999999999999998665443211 11212  46799999999999


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++.++||||+|+++||.++ |..||++..+-+.+..+..+.  .++.|..+|..+.+|+..||++|..+||.++|++++
T Consensus       811 FTsASDVWSyGIVmWEVmSyGERPYWdmSNQdVIkaIe~gy--RLPpPmDCP~aL~qLMldCWqkdR~~RP~F~qiV~~  887 (996)
T KOG0196|consen  811 FTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEQGY--RLPPPMDCPAALYQLMLDCWQKDRNRRPKFAQIVST  887 (996)
T ss_pred             cCchhhccccceEEEEecccCCCcccccchHHHHHHHHhcc--CCCCCCCCcHHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence            9999999999999999876 999999999988888877765  445688899999999999999999999999999864

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=100.00  E-value=8.4e-36  Score=246.40  Aligned_cols=199  Identities=25%  Similarity=0.448  Sum_probs=159.8

Q ss_pred             CCCCCCCccceeeeeEe-eCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYF-KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~-~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |+.++||||+++++++. .+...+++|||+.+|+|.++++.....+.+..+..++.|++.||.|||+.|++|||||    
T Consensus        50 l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk----  125 (262)
T cd05058          50 MKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLA----  125 (262)
T ss_pred             HccCCCCCcceEEEEeecCCCCcEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccC----
Confidence            46789999999999775 4556899999999999999997555667888889999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc----ccccccccccccccccccc
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA----KRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~  155 (251)
                                                   |+||+++.++.++|+|||+++.......    ......++..|+|||.+.+
T Consensus       126 -----------------------------~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  176 (262)
T cd05058         126 -----------------------------ARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQT  176 (262)
T ss_pred             -----------------------------cceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhcc
Confidence                                         8888888889999999999875432111    1112234567999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         156 IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ..++.++|||||||++|++++ |.+||...+.......+......  ..+..+++.+.+++.+||..+|++||+++|++.
T Consensus       177 ~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~  254 (262)
T cd05058         177 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDITVYLLQGRRL--LQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVS  254 (262)
T ss_pred             CccchHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCCC--CCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            889999999999999999999 56777665554444333333222  224556889999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=100.00  E-value=2.2e-36  Score=252.77  Aligned_cols=204  Identities=28%  Similarity=0.468  Sum_probs=162.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK--KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~--~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++...+..++||||+.+ +|.+++....  ..+++..+..++.|++.||.|||+.|++|||||   
T Consensus        52 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~---  127 (284)
T cd07836          52 MKELKHENIVRLHDVIHTENKLMLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLK---  127 (284)
T ss_pred             HHhhcCCCEeeeeeeEeeCCcEEEEEecCCc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC---
Confidence            3578999999999999999999999999975 8988886443  468999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IG  157 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~  157 (251)
                                                    |+||+++.++.++++|||.+..............++..|+|||.+.+ ..
T Consensus       128 ------------------------------p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  177 (284)
T cd07836         128 ------------------------------PQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRT  177 (284)
T ss_pred             ------------------------------HHHEEECCCCcEEEeecchhhhhcCCccccccccccccccChHHhcCCCC
Confidence                                          88999998999999999999754433222233456788999998865 45


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---------------CC--CCCC---------CCCCCCCHHH
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---------------KP--PPSF---------REPDVWTPEF  211 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---------------~~--~~~~---------~~~~~~~~~~  211 (251)
                      ++.++|+||+|+++|++++|.+||.+.+.......+..               ..  ....         ......+..+
T Consensus       178 ~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (284)
T cd07836         178 YSTSIDIWSVGCIMAEMITGRPLFPGTNNEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLG  257 (284)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhcCcHH
Confidence            68899999999999999999999976544322211100               00  0000         0012357889


Q ss_pred             HHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         212 IDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       212 ~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .+++.+||+.||.+||+++|+++||||
T Consensus       258 ~~~i~~~l~~~p~~R~~~~~~l~~~~f  284 (284)
T cd07836         258 IDLLHRLLQLNPELRISAHDALQHPWF  284 (284)
T ss_pred             HHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence            999999999999999999999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>KOG4257|consensus

Probab=100.00  E-value=1.5e-36  Score=264.26  Aligned_cols=197  Identities=27%  Similarity=0.485  Sum_probs=172.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++|+|.+. ..++|||++..|.|.+|++++...++......++.||+.||.|||+.+++||||-     
T Consensus       445 MrnfdHphIikLIGv~~e~-P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIA-----  518 (974)
T KOG4257|consen  445 MRNFDHPHIIKLIGVCVEQ-PMWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESKRFVHRDIA-----  518 (974)
T ss_pred             HHhCCCcchhheeeeeecc-ceeEEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhchhhhhhh-----
Confidence            6899999999999999654 5899999999999999999888999999999999999999999999999999977     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccc-cccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT-VIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~-~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  .+||++.....+|++|||+++-......-... ...+.-|+|||.+....++
T Consensus       519 ----------------------------aRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFT  570 (974)
T KOG4257|consen  519 ----------------------------ARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFT  570 (974)
T ss_pred             ----------------------------hhheeecCcceeeecccchhhhccccchhhccccccceeecCccccchhccc
Confidence                                        77788877788999999999877654333322 2335569999999999999


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      .++|||.||+++||+++ |..||.+-.+...+..+..+.  .++.|+.||+.+..|+.+||.++|.+||++.|+.
T Consensus       571 tASDVWMFgVCmWEIl~lGvkPfqgvkNsDVI~~iEnGe--RlP~P~nCPp~LYslmskcWayeP~kRPrftei~  643 (974)
T KOG4257|consen  571 TASDVWMFGVCMWEILSLGVKPFQGVKNSDVIGHIENGE--RLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEIK  643 (974)
T ss_pred             chhhHHHHHHHHHHHHHhcCCccccccccceEEEecCCC--CCCCCCCCChHHHHHHHHHhccCcccCCcHHHHH
Confidence            99999999999999876 999999888888777776665  4456899999999999999999999999998874

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=100.00  E-value=5.7e-36  Score=252.38  Aligned_cols=198  Identities=24%  Similarity=0.427  Sum_probs=161.7

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHH
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLH   65 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH   65 (251)
                      +++ +||||+++++++......+++|||+.+++|.+++....               ..+++..++.++.|++.||+|||
T Consensus        57 ~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH  136 (297)
T cd05089          57 CKLGHHPNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLS  136 (297)
T ss_pred             HhhcCCCchhheEEEEccCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            355 79999999999998889999999999999999996432               24888999999999999999999


Q ss_pred             hCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccc
Q psy3253          66 LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTP  145 (251)
Q Consensus        66 ~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  145 (251)
                      ++|++|||||                                 |+||+++.++.++|+|||++...... ........+.
T Consensus       137 ~~~ivH~dlk---------------------------------p~Nill~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~  182 (297)
T cd05089         137 EKQFIHRDLA---------------------------------ARNVLVGENLASKIADFGLSRGEEVY-VKKTMGRLPV  182 (297)
T ss_pred             HCCcccCcCC---------------------------------cceEEECCCCeEEECCcCCCccccce-eccCCCCcCc
Confidence            9999999988                                 88888888899999999998543211 1111122245


Q ss_pred             ccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcC
Q psy3253         146 FWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE  224 (251)
Q Consensus       146 ~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  224 (251)
                      .|+|||...+..++.++|||||||++|+|++ |..||.+.........+.....  ...+..++.++.+++.+||+.+|.
T Consensus       183 ~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~  260 (297)
T cd05089         183 RWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYR--MEKPRNCDDEVYELMRQCWRDRPY  260 (297)
T ss_pred             cccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCC--CCCCCCCCHHHHHHHHHHcCCChh
Confidence            6999999988889999999999999999997 9999977666555444433322  223456889999999999999999


Q ss_pred             ccCCHHHHhcC
Q psy3253         225 ERATASEMLNH  235 (251)
Q Consensus       225 ~Rps~~evl~h  235 (251)
                      +|||++++++.
T Consensus       261 ~Rp~~~~i~~~  271 (297)
T cd05089         261 ERPPFAQISVQ  271 (297)
T ss_pred             hCcCHHHHHHH
Confidence            99999999765

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=100.00  E-value=2.7e-36  Score=255.14  Aligned_cols=198  Identities=26%  Similarity=0.448  Sum_probs=161.7

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHH
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLH   65 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH   65 (251)
                      +++ +||||+++++++..+...|+||||+.+++|.++++...               ..+++..++.++.|++.||+|||
T Consensus        62 ~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH  141 (303)
T cd05088          62 CKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS  141 (303)
T ss_pred             HHhcCCCCcceEEEEECCCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHH
Confidence            456 89999999999999999999999999999999996432               25789999999999999999999


Q ss_pred             hCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccc
Q psy3253          66 LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTP  145 (251)
Q Consensus        66 ~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  145 (251)
                      ++|++|||||                                 |+||+++.++.++|+|||++...... ........+.
T Consensus       142 ~~gi~H~dlk---------------------------------p~Nili~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~  187 (303)
T cd05088         142 QKQFIHRDLA---------------------------------ARNILVGENYVAKIADFGLSRGQEVY-VKKTMGRLPV  187 (303)
T ss_pred             hCCccccccc---------------------------------hheEEecCCCcEEeCccccCcccchh-hhcccCCCcc
Confidence            9999999988                                 88888888899999999998533211 1111122355


Q ss_pred             ccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcC
Q psy3253         146 FWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE  224 (251)
Q Consensus       146 ~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  224 (251)
                      .|+|||.+.+..++.++|||||||++|++++ |..||...+.......+....  ....+..+++++.+++.+||+.+|+
T Consensus       188 ~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~  265 (303)
T cd05088         188 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGY--RLEKPLNCDDEVYDLMRQCWREKPY  265 (303)
T ss_pred             cccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCChHHHHHHHhcCC--cCCCCCCCCHHHHHHHHHHcCCChh
Confidence            6999999988888999999999999999998 999997665555444443322  2223455789999999999999999


Q ss_pred             ccCCHHHHhcC
Q psy3253         225 ERATASEMLNH  235 (251)
Q Consensus       225 ~Rps~~evl~h  235 (251)
                      +||++++++.+
T Consensus       266 ~Rp~~~~il~~  276 (303)
T cd05088         266 ERPSFAQILVS  276 (303)
T ss_pred             hCcCHHHHHHH
Confidence            99999999875

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=100.00  E-value=3.8e-36  Score=255.61  Aligned_cols=199  Identities=25%  Similarity=0.434  Sum_probs=163.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++... ..++++||+.+|+|.+++......++...+..++.||+.||+|||++|++|||||     
T Consensus        63 l~~l~h~niv~~~g~~~~~-~~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlk-----  136 (316)
T cd05108          63 MASVDNPHVCRLLGICLTS-TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLA-----  136 (316)
T ss_pred             HHhCCCCCCCeEEEEEcCC-CceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCeeccccc-----
Confidence            4678999999999999765 4789999999999999998666678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--ccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.++|+|||+++........  ......+..|+|||.+.+..+
T Consensus       137 ----------------------------p~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~  188 (316)
T cd05108         137 ----------------------------ARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIY  188 (316)
T ss_pred             ----------------------------hhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCC
Confidence                                        88888888899999999999765432211  111223567999999998899


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      +.++|||||||++|++++ |..||.+.........+....  ....+..++.++.+++.+||..+|++|||+.+++.+
T Consensus       189 ~~~~Di~slGv~l~el~t~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~  264 (316)
T cd05108         189 THQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGE--RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  264 (316)
T ss_pred             CchhhhHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhCCC--CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            999999999999999997 999997765444333222222  223345678999999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=5.1e-36  Score=249.64  Aligned_cols=199  Identities=23%  Similarity=0.432  Sum_probs=164.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------CCCCHHHHHHHHHHHHHHHHHHHhCCccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------KTLSEDEIATILCDTLKGLEYLHLRRKIH   71 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH   71 (251)
                      |+.++||||+++++++......++||||+.+|+|.+++....         ..+++..+..++.|++.||.|||+.|++|
T Consensus        63 l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H  142 (277)
T cd05032          63 MKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVH  142 (277)
T ss_pred             HHhCCCCceeEEEEEEcCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            356899999999999999999999999999999999996322         24678899999999999999999999999


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMA  149 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~a  149 (251)
                      ||||                                 |+||+++.++.++|+|||+++.......  ......++..|+|
T Consensus       143 ~di~---------------------------------p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  189 (277)
T cd05032         143 RDLA---------------------------------ARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMA  189 (277)
T ss_pred             cccC---------------------------------hheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccC
Confidence            9988                                 8889999999999999999875433211  1222345678999


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC
Q psy3253         150 PEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT  228 (251)
Q Consensus       150 PE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  228 (251)
                      ||.+.+..++.++|+|||||++|++++ |..||...+.......+....  ....+..++.++.+++.+||+.+|++|||
T Consensus       190 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rpt  267 (277)
T cd05032         190 PESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGG--HLDLPENCPDKLLELMRMCWQYNPKMRPT  267 (277)
T ss_pred             HHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCHHHHHHHHhcCC--CCCCCCCCCHHHHHHHHHHcCCChhhCCC
Confidence            999988889999999999999999998 999997766655554444332  22335667999999999999999999999


Q ss_pred             HHHHhc
Q psy3253         229 ASEMLN  234 (251)
Q Consensus       229 ~~evl~  234 (251)
                      ++|+++
T Consensus       268 ~~~l~~  273 (277)
T cd05032         268 FLEIVS  273 (277)
T ss_pred             HHHHHH
Confidence            999985

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=100.00  E-value=6.8e-36  Score=249.86  Aligned_cols=199  Identities=22%  Similarity=0.391  Sum_probs=164.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh---------------CCCCCHHHHHHHHHHHHHHHHHHHh
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---------------KKTLSEDEIATILCDTLKGLEYLHL   66 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~---------------~~~l~~~~~~~~~~~i~~~l~~LH~   66 (251)
                      ++++||||+++++++......++++||+.+++|.+++...               ...+++..+..++.|++.||.|||+
T Consensus        63 ~~l~h~~iv~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~  142 (283)
T cd05091          63 SRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSS  142 (283)
T ss_pred             hcCCCCCcCeEEEEEcCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999998522               1347888899999999999999999


Q ss_pred             CCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccc
Q psy3253          67 RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGT  144 (251)
Q Consensus        67 ~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~  144 (251)
                      +|++|||||                                 |+||+++.++.+||+|||+++.......  ......++
T Consensus       143 ~gi~H~dlk---------------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~  189 (283)
T cd05091         143 HHVVHKDLA---------------------------------TRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLP  189 (283)
T ss_pred             cCccccccc---------------------------------hhheEecCCCceEecccccccccccchheeeccCccCC
Confidence            999999988                                 8888888888999999999875432211  11223346


Q ss_pred             cccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCc
Q psy3253         145 PFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP  223 (251)
Q Consensus       145 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  223 (251)
                      +.|+|||.+.+..++.++||||+||++|+|++ |..||.+.........+......  ..+..++..+.+++.+||+.+|
T Consensus       190 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~li~~cl~~~p  267 (283)
T cd05091         190 IRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMIRNRQVL--PCPDDCPAWVYTLMLECWNEFP  267 (283)
T ss_pred             ccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCcC--CCCCCCCHHHHHHHHHHhCCCc
Confidence            78999999988889999999999999999998 88899777666555554444322  2356789999999999999999


Q ss_pred             CccCCHHHHhcC
Q psy3253         224 EERATASEMLNH  235 (251)
Q Consensus       224 ~~Rps~~evl~h  235 (251)
                      ++||+++|+++.
T Consensus       268 ~~RP~~~~i~~~  279 (283)
T cd05091         268 SRRPRFKDIHSR  279 (283)
T ss_pred             ccCCCHHHHHHH
Confidence            999999999853

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.9e-36  Score=246.67  Aligned_cols=199  Identities=23%  Similarity=0.419  Sum_probs=164.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++......|++|||+.+++|.+++.... ..+++..+..++.|++.||.+||+.|++|||||    
T Consensus        55 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~----  130 (261)
T cd05068          55 MKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLA----  130 (261)
T ss_pred             HHHCCCCCccceeEEEecCCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCC----
Confidence            357899999999999999999999999999999999997443 468999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-ccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.++|+|||++......... ......+..|+|||.+.+..+
T Consensus       131 -----------------------------p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  181 (261)
T cd05068         131 -----------------------------ARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRF  181 (261)
T ss_pred             -----------------------------cceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCccccccCCC
Confidence                                         88888888999999999999765432111 111122346999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|+||||+++|++++ |+.||.+.........+.....  ...+..++..+.+++.+||+.+|++||++++++.
T Consensus       182 ~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~  256 (261)
T cd05068         182 SIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQVDQGYR--MPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQW  256 (261)
T ss_pred             CchhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC--CCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence            999999999999999999 9999987666555544433322  2234567899999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=100.00  E-value=5.2e-36  Score=256.71  Aligned_cols=209  Identities=27%  Similarity=0.422  Sum_probs=165.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...+++|||+. |+|.+++. ....+++..+..++.|++.||.|||+.|++|||||     
T Consensus        74 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~-~~~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~-----  146 (335)
T PTZ00024         74 MNEIKHENIMGLVDVYVEGDFINLVMDIMA-SDLKKVVD-RKIRLTESQVKCILLQILNGLNVLHKWYFMHRDLS-----  146 (335)
T ss_pred             HHhCCCcceeeeeEEEecCCcEEEEEeccc-cCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccc-----
Confidence            357899999999999999999999999996 59999886 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc--------------cccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT--------------MAKRNTVIGTPF  146 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~--------------~~~~~~~~~~~~  146 (251)
                                                  |+||+++.++.++|+|||.+......              ........++..
T Consensus       147 ----------------------------~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (335)
T PTZ00024        147 ----------------------------PANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLW  198 (335)
T ss_pred             ----------------------------HHHeEECCCCCEEECCccceeecccccccccccccccccccccccccccccC
Confidence                                        88889988999999999998754411              111112235678


Q ss_pred             cccccccccC-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CCCCCC----------------------
Q psy3253         147 WMAPEVIQEI-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TKPPPS----------------------  200 (251)
Q Consensus       147 y~aPE~~~~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~~~~~----------------------  200 (251)
                      |+|||.+.+. .++.++|+||+||++|++++|.+||.+.+.......+.   ......                      
T Consensus       199 y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (335)
T PTZ00024        199 YRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGENEIDQLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDL  278 (335)
T ss_pred             CCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCchhhCcchhhcccccccCcCCcccH
Confidence            9999998653 46889999999999999999999997665433222110   000000                      


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         201 FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       201 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      .......+.++.+++.+||+.+|++|||++|++.||||+...-.
T Consensus       279 ~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~~~~~~~~~~  322 (335)
T PTZ00024        279 KTIFPNASDDAIDLLQSLLKLNPLERISAKEALKHEYFKSDPLP  322 (335)
T ss_pred             HHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcCcccCCCCCC
Confidence            00113457889999999999999999999999999999865443

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=7.6e-36  Score=246.25  Aligned_cols=197  Identities=27%  Similarity=0.471  Sum_probs=162.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++. ....+++|||+.+|+|.+++.. ...+++..+..++.|++.||.|||+.|++|||||     
T Consensus        50 l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~-----  122 (257)
T cd05060          50 MAQLDHPCIVRLIGVCK-GEPLMLVMELAPLGPLLKYLKK-RREIPVSDLKELAHQVAMGMAYLESKHFVHRDLA-----  122 (257)
T ss_pred             HHhcCCCCeeeEEEEEc-CCceEEEEEeCCCCcHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHhhcCeeccCcc-----
Confidence            45789999999999875 4568999999999999999973 4579999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc---cccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR---NTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.++|+|||.++.........   ....++..|+|||.+.+..
T Consensus       123 ----------------------------p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  174 (257)
T cd05060         123 ----------------------------ARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGK  174 (257)
T ss_pred             ----------------------------cceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCC
Confidence                                        888888889999999999997654322111   1112235699999998888


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++.++|+||||+++|++++ |.+||...+.......+....  ....+..+++.+.+++.+||..+|++|||+.++++
T Consensus       175 ~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~  250 (257)
T cd05060         175 FSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAMLESGE--RLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELES  250 (257)
T ss_pred             CCccchHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCC--cCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            9999999999999999998 999997766555444443332  22345678899999999999999999999999973

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=100.00  E-value=2e-36  Score=252.07  Aligned_cols=200  Identities=29%  Similarity=0.537  Sum_probs=168.8

Q ss_pred             CCCC-CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCD-SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~-hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      ++++ ||||+++++++.++...+++|||+.+++|.+++. ....+++..+..++.|++.||.+||+.|++|+|||     
T Consensus        56 ~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~-----  129 (280)
T cd05581          56 TRLNGHPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIR-KYGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLK-----  129 (280)
T ss_pred             HhcccCCCchhHHHHhcCCceEEEEEcCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-----
Confidence            3566 9999999999999999999999999999999997 44589999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--------------------ccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--------------------AKRNT  140 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--------------------~~~~~  140 (251)
                                                  |+||+++.++.++++|||.+.......                    .....
T Consensus       130 ----------------------------~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (280)
T cd05581         130 ----------------------------PENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFAS  181 (280)
T ss_pred             ----------------------------HHHeEECCCCCEEecCCccccccCCccccccCCCCCcccccccccccccccc
Confidence                                        888899888999999999987654322                    11222


Q ss_pred             cccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhh
Q psy3253         141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLV  220 (251)
Q Consensus       141 ~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  220 (251)
                      ..++..|+|||......++.++|+||+|++++++++|..||...+.......+...   ....+..+++.+.+++.+||+
T Consensus       182 ~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~  258 (280)
T cd05581         182 FVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYLTFQKILKL---EYSFPPNFPPDAKDLIEKLLV  258 (280)
T ss_pred             ccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhc---CCCCCCccCHHHHHHHHHHhc
Confidence            34677899999998888899999999999999999999999776544433332221   223356679999999999999


Q ss_pred             cCcCccCCH----HHHhcChhh
Q psy3253         221 KNPEERATA----SEMLNHEFI  238 (251)
Q Consensus       221 ~~p~~Rps~----~evl~hp~~  238 (251)
                      .+|++|||+    +++++||||
T Consensus       259 ~~p~~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         259 LDPQDRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             CCHhhCCCcccCHHHHhcCCCC
Confidence            999999999    999999997

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=100.00  E-value=1e-35  Score=246.77  Aligned_cols=199  Identities=24%  Similarity=0.387  Sum_probs=165.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||++++++++......++||||+.+++|.+++......+++..+..++.|++.||.|||+.|++|||||     
T Consensus        60 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlk-----  134 (268)
T cd05063          60 MGQFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLA-----  134 (268)
T ss_pred             HhcCCCCCeeEEEEEEccCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccc-----
Confidence            457899999999999999999999999999999999997666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccc---ccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN---TVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~---~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.++++|||++...........   ....+..|+|||.+.+..
T Consensus       135 ----------------------------p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  186 (268)
T cd05063         135 ----------------------------ARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRK  186 (268)
T ss_pred             ----------------------------hhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCC
Confidence                                        8888888888999999999875543211111   111234699999998888


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++.++|+||+||++|++++ |..||...........+....  ....+..++.++.+++.+||+.+|++||+++++++
T Consensus       187 ~~~~~Dv~slG~il~ell~~g~~p~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~  262 (268)
T cd05063         187 FTSASDVWSFGIVMWEVMSFGERPYWDMSNHEVMKAINDGF--RLPAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVN  262 (268)
T ss_pred             cChHhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhcCC--CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence            8999999999999999987 999997666555554444332  22234567899999999999999999999999984

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=100.00  E-value=6.2e-36  Score=247.87  Aligned_cols=200  Identities=28%  Similarity=0.560  Sum_probs=162.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      |+.++||||+++++++......++++||+.+++|.+++..   ....+++..+..++.|++.||.|||++|++|+|||  
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~--  133 (267)
T cd08228          56 LKQLNHPNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIK--  133 (267)
T ss_pred             HHhCCCcceeeeeeeEEECCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCC--
Confidence            3578999999999999999999999999999999988852   23458999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                     |+||+++.++.++|+|||.+..............++..|+|||.+.+..
T Consensus       134 -------------------------------~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  182 (267)
T cd08228         134 -------------------------------PANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENG  182 (267)
T ss_pred             -------------------------------HHHEEEcCCCCEEECccccceeccchhHHHhcCCCCccccChhhhccCC
Confidence                                           8888888889999999999876543322223345778899999998888


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCc--chhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++.++|+||+|+++|++++|..||.....  ......+.....+.. .....+..+.+++.+||..+|++||+++|+++
T Consensus       183 ~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~  260 (267)
T cd08228         183 YNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQCDYPPL-PTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQ  260 (267)
T ss_pred             CCchhhHHHHHHHHHHHhcCCCCCccccccHHHHHHHHhcCCCCCC-ChhhcCHHHHHHHHHHCCCCcccCcCHHHHHH
Confidence            89999999999999999999999854432  222222222222121 12356789999999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>KOG0696|consensus

Probab=100.00  E-value=4.9e-37  Score=256.61  Aligned_cols=204  Identities=27%  Similarity=0.459  Sum_probs=182.4

Q ss_pred             CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccc
Q psy3253           6 SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDR   85 (251)
Q Consensus         6 hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~   85 (251)
                      -|.+++++..|++-+++|.||||+.||+|.-.++ .-+.|.+..+..++.+|+.||-|||++|||+||+|          
T Consensus       409 ppFL~qlHScFQTmDRLyFVMEyvnGGDLMyhiQ-Q~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLK----------  477 (683)
T KOG0696|consen  409 PPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYHIQ-QVGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLK----------  477 (683)
T ss_pred             CchHHHHHHHhhhhhheeeEEEEecCchhhhHHH-HhcccCCchhhhhhHHHHHHhhhhhcCCeeeeecc----------
Confidence            4789999999999999999999999999988886 56789999999999999999999999999999988          


Q ss_pred             cccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhHH
Q psy3253          86 LDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMW  165 (251)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvw  165 (251)
                                             .+|++++..|++||.|||+++.-.-......+..|||.|+|||++...+|+.++|-|
T Consensus       478 -----------------------LDNvmLd~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWW  534 (683)
T KOG0696|consen  478 -----------------------LDNVMLDSEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWW  534 (683)
T ss_pred             -----------------------ccceEeccCCceEeeecccccccccCCcceeeecCCCcccccceEEecccccchhHH
Confidence                                   889999999999999999998654444445667899999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH-----HHHhcChhhhh
Q psy3253         166 SLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA-----SEMLNHEFIQR  240 (251)
Q Consensus       166 slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~-----~evl~hp~~~~  240 (251)
                      |+|+++|||+.|++||.+.+..+....+....   ...|..+|.+..++.+..|...|.+|...     .+|-.|||||+
T Consensus       535 a~GVLLyEmlaGQpPFdGeDE~elF~aI~ehn---vsyPKslSkEAv~ickg~ltK~P~kRLGcg~~ge~di~~H~FFR~  611 (683)
T KOG0696|consen  535 AFGVLLYEMLAGQPPFDGEDEDELFQAIMEHN---VSYPKSLSKEAVAICKGLLTKHPGKRLGCGPEGERDIREHPFFRR  611 (683)
T ss_pred             HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHcc---CcCcccccHHHHHHHHHHhhcCCccccCCCCccccchhhCcchhh
Confidence            99999999999999999999888887766542   23467789999999999999999999643     67999999999


Q ss_pred             ccCCCC
Q psy3253         241 HDTDPS  246 (251)
Q Consensus       241 ~~~~~~  246 (251)
                      .+|+.-
T Consensus       612 iDWek~  617 (683)
T KOG0696|consen  612 IDWEKL  617 (683)
T ss_pred             ccHHHH
Confidence            999863

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=100.00  E-value=3.8e-36  Score=253.22  Aligned_cols=207  Identities=36%  Similarity=0.685  Sum_probs=165.8

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCCCcc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSGTLV   82 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni~~~   82 (251)
                      .+||||+++++++.++...|++|||+. ++|.+++......+++..+..++.|++.||.|||+ .|++||||+       
T Consensus        71 ~~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~-------  142 (296)
T cd06618          71 HDCPYIVKCYGYFITDSDVFICMELMS-TCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVK-------  142 (296)
T ss_pred             cCCCchHhhheeeecCCeEEEEeeccC-cCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCc-------
Confidence            369999999999999999999999994 58888877556789999999999999999999997 599999988       


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC----C
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG----Y  158 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~  158 (251)
                                                |+||+++.++.++|+|||.+........ .....++..|+|||.+.+..    +
T Consensus       143 --------------------------p~nill~~~~~~kL~dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~  195 (296)
T cd06618         143 --------------------------PSNILLDASGNVKLCDFGISGRLVDSKA-KTRSAGCAAYMAPERIDPPDPNPKY  195 (296)
T ss_pred             --------------------------HHHEEEcCCCCEEECccccchhccCCCc-ccCCCCCccccCHhhcCCCCCcccc
Confidence                                      8899999899999999999875543221 12234567899999986543    7


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++|+||||+++|+|++|+.||...... .....+.............++.++.+++.+||..||++||+++++++|||
T Consensus       196 ~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~  275 (296)
T cd06618         196 DIRADVWSLGISLVELATGQFPYKNCKTEFEVLTKILQEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQHPF  275 (296)
T ss_pred             ccchhHHHHHHHHHHHHhCCCCCCcchhHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcChh
Confidence            88999999999999999999999653322 22222222222222223357899999999999999999999999999999


Q ss_pred             hhhccCCC
Q psy3253         238 IQRHDTDP  245 (251)
Q Consensus       238 ~~~~~~~~  245 (251)
                      |+......
T Consensus       276 ~~~~~~~~  283 (296)
T cd06618         276 IRRYETAE  283 (296)
T ss_pred             hhccchhH
Confidence            99765443

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=100.00  E-value=9.4e-36  Score=245.45  Aligned_cols=199  Identities=24%  Similarity=0.465  Sum_probs=164.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.. ...+++|||+++++|.+++.... ..+++..+..++.|++.||.|||++|++|+|||    
T Consensus        50 l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~----  124 (257)
T cd05040          50 MHSLDHENLIRLYGVVLT-HPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLA----  124 (257)
T ss_pred             HhhcCCCCccceeEEEcC-CeEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccC----
Confidence            467899999999999988 88999999999999999997554 578999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---cccccccccccccccccccC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQEI  156 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~  156 (251)
                                                   |+||+++.++.++|+|||.+........   ......++..|+|||.+.+.
T Consensus       125 -----------------------------p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~  175 (257)
T cd05040         125 -----------------------------ARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTR  175 (257)
T ss_pred             -----------------------------cccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhccc
Confidence                                         8888888889999999999976543211   11123356679999999888


Q ss_pred             CCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         157 GYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       157 ~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .++.++|+||+||++|+|++ |..||...........+... ......+...+..+.+++.+||..+|++|||++|+++
T Consensus       176 ~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  253 (257)
T cd05040         176 TFSHASDVWMFGVTLWEMFTYGEEPWAGLSGSQILKKIDKE-GERLERPEACPQDIYNVMLQCWAHNPADRPTFAALRE  253 (257)
T ss_pred             CcCchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhc-CCcCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHH
Confidence            89999999999999999998 99999766555444333321 1223335567899999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=100.00  E-value=8.4e-36  Score=247.42  Aligned_cols=199  Identities=26%  Similarity=0.416  Sum_probs=164.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...|+||||+++++|.+++......+++.++..++.|++.||.+||+.|++|||||     
T Consensus        59 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlk-----  133 (267)
T cd05066          59 MGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLA-----  133 (267)
T ss_pred             HHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhc-----
Confidence            357899999999999999999999999999999999998656678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc---cccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR---NTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.++++|||.+..........   ....++..|+|||.+.+..
T Consensus       134 ----------------------------p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~  185 (267)
T cd05066         134 ----------------------------ARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRK  185 (267)
T ss_pred             ----------------------------hhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCc
Confidence                                        888888888999999999997654321111   1112245799999998888


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++.++|+||+||++|++++ |..||.+.........+....  ....+..+++.+.+++.+||+.+|++||+++++++
T Consensus       186 ~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  261 (267)
T cd05066         186 FTSASDVWSYGIVMWEVMSYGERPYWEMSNQDVIKAIEEGY--RLPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVS  261 (267)
T ss_pred             cCchhhhHHHHHHHHHHhcCCCCCcccCCHHHHHHHHhCCC--cCCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHH
Confidence            9999999999999999886 999997765544444443332  22234567899999999999999999999999974

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=100.00  E-value=4.6e-36  Score=253.63  Aligned_cols=204  Identities=26%  Similarity=0.461  Sum_probs=157.5

Q ss_pred             CCCCCCCccceeeeeEeeCC--------eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT--------DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR   72 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~--------~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~   72 (251)
                      |++++||||+++++++....        ..++||||+. ++|.+++......+++.+++.++.|++.||.|||++|++|+
T Consensus        65 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~  143 (310)
T cd07865          65 LQLLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCE-HDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKILHR  143 (310)
T ss_pred             HHhCCCCCccceEEEEecccccccCCCceEEEEEcCCC-cCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecc
Confidence            35789999999999986543        4699999995 58988887555679999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc----ccccccccccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK----RNTVIGTPFWM  148 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~----~~~~~~~~~y~  148 (251)
                      |||                                 |+||+++.++.++|+|||.+.........    .....++..|+
T Consensus       144 dl~---------------------------------p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~  190 (310)
T cd07865         144 DMK---------------------------------AANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYR  190 (310)
T ss_pred             CCC---------------------------------HHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCcccc
Confidence            988                                 88999998999999999999755322111    12234577899


Q ss_pred             cccccccC-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhh---cCCCCCCC---------------C--------
Q psy3253         149 APEVIQEI-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM---IPTKPPPS---------------F--------  201 (251)
Q Consensus       149 aPE~~~~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~---~~~~~~~~---------------~--------  201 (251)
                      |||.+.+. .++.++|+||+|+++|+|++|.+||.+.+.......   +....+..               .        
T Consensus       191 aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (310)
T cd07865         191 PPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNTEQHQLTLISQLCGSITPEVWPGVDKLELFKKMELPQGQKRKV  270 (310)
T ss_pred             CcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhcccccchhhhhhccCCCccchhh
Confidence            99988654 468899999999999999999999966543221111   00000000               0        


Q ss_pred             ---CCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         202 ---REPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       202 ---~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                         ......++.+.++|.+||..||++|||++|+++||||
T Consensus       271 ~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h~~f  310 (310)
T cd07865         271 KERLKPYVKDPHALDLIDKLLVLDPAKRIDADTALNHDFF  310 (310)
T ss_pred             HHhcccccCCHHHHHHHHHHhcCChhhccCHHHHhcCCCC
Confidence               0011235678899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=7.9e-36  Score=246.46  Aligned_cols=202  Identities=19%  Similarity=0.308  Sum_probs=155.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...++||||+.+|+|.++++.....+++..++.++.||+.||.|||++|++||||||+||+
T Consensus        53 l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nil  132 (258)
T cd05078          53 MSQLSHKHLVLNYGVCVCGDESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVL  132 (258)
T ss_pred             HHhCCCCChhheeeEEEeCCCcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEE
Confidence            35789999999999999989999999999999999999865667899999999999999999999999999999955554


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                      +.-+.                         .......+.++++|||.+......    ....++..|+|||.+.+ ..++
T Consensus       133 i~~~~-------------------------~~~~~~~~~~~l~d~g~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~  183 (258)
T cd05078         133 LIREE-------------------------DRKTGNPPFIKLSDPGISITVLPK----EILLERIPWVPPECIENPQNLS  183 (258)
T ss_pred             Eeccc-------------------------ccccCCCceEEecccccccccCCc----hhccccCCccCchhccCCCCCC
Confidence            44110                         000112223799999998654322    22346778999999976 4578


Q ss_pred             cchhHHHHHHHHHHHHhC-CCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMAEG-KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++|+||+|+++|++++| .+||...+..........    ....+...+.++.+++.+||+.||++|||++++++.
T Consensus       184 ~~~DiwslG~~l~~l~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  256 (258)
T cd05078         184 LAADKWSFGTTLWEIFSGGDKPLSALDSQKKLQFYED----RHQLPAPKWTELANLINQCMDYEPDFRPSFRAIIRD  256 (258)
T ss_pred             chhhHHHHHHHHHHHHcCCCCChhhccHHHHHHHHHc----cccCCCCCcHHHHHHHHHHhccChhhCCCHHHHHHh
Confidence            899999999999999998 466655544333222111    112244567889999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-36  Score=252.97  Aligned_cols=204  Identities=27%  Similarity=0.497  Sum_probs=164.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...++|+||+.+ +|.+++......+++..+..++.|++.||.|||+.|++|+|||     
T Consensus        52 l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~-----  125 (283)
T cd05118          52 LKELNHPNIIKLLDVFRHKGDLYLVFEFMDT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLK-----  125 (283)
T ss_pred             HHHhcCCCcchHHHhhccCCCEEEEEeccCC-CHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcC-----
Confidence            3567899999999999999999999999965 8998887656789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccC-CCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~  159 (251)
                                                  |+||+++.++.++|+|||.+..............++..|+|||.+.+. .++
T Consensus       126 ----------------------------p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~  177 (283)
T cd05118         126 ----------------------------PENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYS  177 (283)
T ss_pred             ----------------------------HHHEEECCCCcEEEeeeeeeEecCCCcccccCccCcccccCcHHHhcCCCCC
Confidence                                        889999999999999999997665443222234467789999998776 788


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC----C----------------------CCC-CCCCCCCCHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK----P----------------------PPS-FREPDVWTPEFI  212 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~----~----------------------~~~-~~~~~~~~~~~~  212 (251)
                      .++|+||+|+++|++++|+.||...+.......+...    .                      ... ......++.++.
T Consensus       178 ~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (283)
T cd05118         178 TPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQAL  257 (283)
T ss_pred             chhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHH
Confidence            9999999999999999999999655443222111000    0                      000 001234678899


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      ++|.+||+.||.+||+++|+++||||
T Consensus       258 ~~i~~~l~~~P~~Rp~~~~ll~~~~~  283 (283)
T cd05118         258 DLLSQMLHYDPHKRITAEQALAHPYF  283 (283)
T ss_pred             HHHHHHhccCcccCcCHHHHhhCCCC
Confidence            99999999999999999999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG1989|consensus

Probab=100.00  E-value=1.1e-36  Score=274.37  Aligned_cols=197  Identities=27%  Similarity=0.457  Sum_probs=160.1

Q ss_pred             CCCCC-CCccceeeeeE-ee------CCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCC--c
Q psy3253           1 MQQCD-SPYVVKYYGSY-FK------NTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRR--K   69 (251)
Q Consensus         1 l~~l~-hpniv~l~~~~-~~------~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~--i   69 (251)
                      ||+|. |||||.+++.. ..      ...+.|+||||.||+|-++|+++ ...|++.++++|+.+++.|+.+||...  |
T Consensus        88 MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPi  167 (738)
T KOG1989|consen   88 MKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPI  167 (738)
T ss_pred             HHHhcCCCceeeEeccccccccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            56775 99999999933 21      13488999999999999999743 245999999999999999999999987  9


Q ss_pred             cccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---------cccc
Q psy3253          70 IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---------KRNT  140 (251)
Q Consensus        70 iH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---------~~~~  140 (251)
                      ||||||                                 .+|+|+..++++||||||.+.......+         ....
T Consensus       168 IHRDLK---------------------------------iENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~  214 (738)
T KOG1989|consen  168 IHRDLK---------------------------------IENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIE  214 (738)
T ss_pred             chhhhh---------------------------------hhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHH
Confidence            999988                                 7788999999999999999975433221         1122


Q ss_pred             ccccccccccccc---ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHH
Q psy3253         141 VIGTPFWMAPEVI---QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSR  217 (251)
Q Consensus       141 ~~~~~~y~aPE~~---~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  217 (251)
                      ..-|+.|+|||.+   .+.+.+.|+|||+|||+||.|+....||.+.....+....     -.++....++..+.+||..
T Consensus       215 k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~laIlng~-----Y~~P~~p~ys~~l~~LI~~  289 (738)
T KOG1989|consen  215 KYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLAILNGN-----YSFPPFPNYSDRLKDLIRT  289 (738)
T ss_pred             hhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcceeEEecc-----ccCCCCccHHHHHHHHHHH
Confidence            3468899999988   4678999999999999999999999999876554443221     1223345789999999999


Q ss_pred             hhhcCcCccCCHHHHhcC
Q psy3253         218 CLVKNPEERATASEMLNH  235 (251)
Q Consensus       218 ~l~~~p~~Rps~~evl~h  235 (251)
                      ||+.||.+||++-|++.+
T Consensus       290 mL~~nP~~RPnI~Qv~~~  307 (738)
T KOG1989|consen  290 MLQPNPDERPNIYQVLEE  307 (738)
T ss_pred             HhccCcccCCCHHHHHHH
Confidence            999999999999999865

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=100.00  E-value=4.8e-36  Score=251.96  Aligned_cols=199  Identities=25%  Similarity=0.481  Sum_probs=163.5

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh---------------CCCCCHHHHHHHHHHHHHHHHHHH
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---------------KKTLSEDEIATILCDTLKGLEYLH   65 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~---------------~~~l~~~~~~~~~~~i~~~l~~LH   65 (251)
                      +++ +||||+++++++..+...+++|||+.+|+|.++++..               ...+++..++.++.|++.||.|||
T Consensus        70 ~~l~~h~~i~~~~~~~~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH  149 (293)
T cd05053          70 KMIGKHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLA  149 (293)
T ss_pred             HhhcCCCCeeeEEEEEcCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence            356 7999999999999999999999999999999999632               246889999999999999999999


Q ss_pred             hCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--cccccc
Q psy3253          66 LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIG  143 (251)
Q Consensus        66 ~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~  143 (251)
                      +.|++|||||                                 |+||+++.++.++|+|||.++........  .....+
T Consensus       150 ~~~ivH~dlk---------------------------------p~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~  196 (293)
T cd05053         150 SKKCIHRDLA---------------------------------ARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRL  196 (293)
T ss_pred             HCCccccccc---------------------------------eeeEEEcCCCeEEeCccccccccccccceeccCCCCC
Confidence            9999999988                                 88888888999999999999755432111  111223


Q ss_pred             ccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcC
Q psy3253         144 TPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN  222 (251)
Q Consensus       144 ~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  222 (251)
                      +..|+|||.+.+..++.++|||||||++|++++ |..||.+.........+.....  ...+...+..+.+++.+||+.|
T Consensus       197 ~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~  274 (293)
T cd05053         197 PVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGYR--MEKPQNCTQELYHLMRDCWHEV  274 (293)
T ss_pred             CccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHHHHHHHHcCCc--CCCCCCCCHHHHHHHHHHcccC
Confidence            456999999988889999999999999999997 9999977665554444433322  2235567899999999999999


Q ss_pred             cCccCCHHHHhcC
Q psy3253         223 PEERATASEMLNH  235 (251)
Q Consensus       223 p~~Rps~~evl~h  235 (251)
                      |++|||++|++++
T Consensus       275 p~~Rps~~eil~~  287 (293)
T cd05053         275 PSQRPTFKQLVED  287 (293)
T ss_pred             cccCcCHHHHHHH
Confidence            9999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=100.00  E-value=8.3e-36  Score=247.93  Aligned_cols=197  Identities=26%  Similarity=0.449  Sum_probs=160.1

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHH
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLH   65 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH   65 (251)
                      +++ +||||+++++++......+++|||+.+|+|.+++....               ..+++..++.++.|++.||+|||
T Consensus        50 ~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH  129 (270)
T cd05047          50 CKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS  129 (270)
T ss_pred             HhhccCCCeeeEEEEEecCCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            456 79999999999999889999999999999999996432               24789999999999999999999


Q ss_pred             hCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccc
Q psy3253          66 LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTP  145 (251)
Q Consensus        66 ~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  145 (251)
                      +.|++|||||                                 |+||+++.++.++++|||++...... ........+.
T Consensus       130 ~~~i~H~dik---------------------------------p~nili~~~~~~kl~dfgl~~~~~~~-~~~~~~~~~~  175 (270)
T cd05047         130 QKQFIHRDLA---------------------------------ARNILVGENYVAKIADFGLSRGQEVY-VKKTMGRLPV  175 (270)
T ss_pred             HCCEeecccc---------------------------------cceEEEcCCCeEEECCCCCccccchh-hhccCCCCcc
Confidence            9999999988                                 88888888999999999998532211 1111122345


Q ss_pred             ccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcC
Q psy3253         146 FWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE  224 (251)
Q Consensus       146 ~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  224 (251)
                      .|+|||++....++.++|+|||||++|+|++ |..||.+.+.......+.....  ...+..++.++.+++.+||..||.
T Consensus       176 ~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~  253 (270)
T cd05047         176 RWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYR--LEKPLNCDDEVYDLMRQCWREKPY  253 (270)
T ss_pred             ccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHHHHHHHhCCCC--CCCCCcCCHHHHHHHHHHcccChh
Confidence            6999999988889999999999999999997 9999976655444444433322  223455788999999999999999


Q ss_pred             ccCCHHHHhc
Q psy3253         225 ERATASEMLN  234 (251)
Q Consensus       225 ~Rps~~evl~  234 (251)
                      +|||++|++.
T Consensus       254 ~Rps~~~il~  263 (270)
T cd05047         254 ERPSFAQILV  263 (270)
T ss_pred             hCCCHHHHHH
Confidence            9999999975

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=100.00  E-value=9.7e-36  Score=246.01  Aligned_cols=199  Identities=25%  Similarity=0.423  Sum_probs=164.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++......+++|||+.+++|.+++... ...++...+..++.|++.||.|||+.|++|||||    
T Consensus        55 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~----  130 (261)
T cd05072          55 MKTLQHDKLVRLYAVVTKEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLR----  130 (261)
T ss_pred             HHhCCCCCeeeEEEEEcCCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccc----
Confidence            35789999999999999999999999999999999999643 4568899999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-ccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.++|+|||.+......... .....++..|+|||.+.+..+
T Consensus       131 -----------------------------p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  181 (261)
T cd05072         131 -----------------------------AANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSF  181 (261)
T ss_pred             -----------------------------hhhEEecCCCcEEECCCccceecCCCceeccCCCccceecCCHHHhccCCC
Confidence                                         88888888899999999999765432111 112234567999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|+||+||++|++++ |..||...........+.....  ......++.++.+++.+||..+|++|||++++++
T Consensus       182 ~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  256 (261)
T cd05072         182 TIKSDVWSFGILLYEIVTYGKIPYPGMSNSDVMSALQRGYR--MPRMENCPDELYDIMKTCWKEKAEERPTFDYLQS  256 (261)
T ss_pred             ChhhhhhhhHHHHHHHHccCCCCCCCCCHHHHHHHHHcCCC--CCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence            999999999999999998 9999977655554444433322  2234567899999999999999999999999973

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.3e-35  Score=243.74  Aligned_cols=199  Identities=28%  Similarity=0.469  Sum_probs=164.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +++++||||+++++++.+....++||||+.+++|.+++......+++..+..++.+++.||.|||++|++|||||     
T Consensus        46 l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~-----  120 (251)
T cd05041          46 LKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLA-----  120 (251)
T ss_pred             HHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcC-----
Confidence            357899999999999999999999999999999999997656678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc--cccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.++|+|||.+..........  .....+..|+|||.+.+..+
T Consensus       121 ----------------------------p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  172 (251)
T cd05041         121 ----------------------------ARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRY  172 (251)
T ss_pred             ----------------------------cceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCC
Confidence                                        888899889999999999987543211111  11223456999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|+||+|+++|++++ |..||...........+....  ....+..++.++.+++.+||..+|++|||++|+++
T Consensus       173 ~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~  247 (251)
T cd05041         173 TSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIESGY--RMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYN  247 (251)
T ss_pred             CcchhHHHHHHHHHHHHhccCCCCccCCHHHHHHHHhcCC--CCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence            999999999999999998 889997766544444433322  22235667899999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>KOG0614|consensus

Probab=100.00  E-value=2e-37  Score=264.25  Aligned_cols=209  Identities=30%  Similarity=0.546  Sum_probs=190.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |.++.+|.||++|..|.+....||+||-|-||.|+..++ .++.|++..++.++.-+++|+.|||.+|||+||+|     
T Consensus       474 m~~~~s~fIvrLYrTfrd~kyvYmLmEaClGGElWTiLr-dRg~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLK-----  547 (732)
T KOG0614|consen  474 MMECRSDFIVRLYRTFRDSKYVYMLMEACLGGELWTILR-DRGSFDDYTARFYVACVLEAFEYLHRKGIIYRDLK-----  547 (732)
T ss_pred             HHhcCchHHHHHHHHhccchhhhhhHHhhcCchhhhhhh-hcCCcccchhhhhHHHHHHHHHHHHhcCceeccCC-----
Confidence            346789999999999999999999999999999999998 67899999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+|.+++.+|-+||.|||+|+.+... .+..++.||+.|.|||++.+...+.
T Consensus       548 ----------------------------PENllLd~~Gy~KLVDFGFAKki~~g-~KTwTFcGTpEYVAPEIILnKGHD~  598 (732)
T KOG0614|consen  548 ----------------------------PENLLLDNRGYLKLVDFGFAKKIGSG-RKTWTFCGTPEYVAPEIILNKGHDR  598 (732)
T ss_pred             ----------------------------hhheeeccCCceEEeehhhHHHhccC-CceeeecCCcccccchhhhccCcch
Confidence                                        88999999999999999999988765 4566788999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl~h  235 (251)
                      ++|.||||+++|||++|.+||.+.+++..+..+..+.. .+..|..++....++|.++...+|.+|..     +.++-+|
T Consensus       599 avDyWaLGIli~ELL~G~pPFs~~dpmktYn~ILkGid-~i~~Pr~I~k~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH  677 (732)
T KOG0614|consen  599 AVDYWALGILIYELLTGSPPFSGVDPMKTYNLILKGID-KIEFPRRITKTATDLIKKLCRDNPTERLGYQKGGINDIKKH  677 (732)
T ss_pred             hhHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHHhhhh-hhhcccccchhHHHHHHHHHhcCcHhhhccccCChHHHHhh
Confidence            99999999999999999999999999988887776643 34457788999999999999999999974     8999999


Q ss_pred             hhhhhccCCC
Q psy3253         236 EFIQRHDTDP  245 (251)
Q Consensus       236 p~~~~~~~~~  245 (251)
                      .||...+|+-
T Consensus       678 ~Wf~gfdweg  687 (732)
T KOG0614|consen  678 RWFEGFDWEG  687 (732)
T ss_pred             hhhhcCChhh
Confidence            9999999974

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=100.00  E-value=1.4e-35  Score=250.76  Aligned_cols=199  Identities=24%  Similarity=0.455  Sum_probs=161.2

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      +++ +||||+++++++...+..+++|||+.+|+|.++++... ..+++.++..++.|++.||.|||++|++|+|||    
T Consensus        93 ~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlk----  168 (302)
T cd05055          93 SHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLA----  168 (302)
T ss_pred             HhccCCCCcceEEEEEecCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhc----
Confidence            467 79999999999999999999999999999999997433 348999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                   |+||+++.++.++++|||++........  ......++..|+|||.+.+..
T Consensus       169 -----------------------------p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  219 (302)
T cd05055         169 -----------------------------ARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCV  219 (302)
T ss_pred             -----------------------------cceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCC
Confidence                                         8888888888899999999975543211  112223466799999998888


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++.++||||+||++|++++ |..||................ .....+...++++.+++.+||+.+|++|||++|+++
T Consensus       220 ~~~~~DiwslGvil~el~t~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~  296 (302)
T cd05055         220 YTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLIKEG-YRMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQ  296 (302)
T ss_pred             CCcHhHHHHHHHHHHHHHhCCCCCcCCCCchHHHHHHHHcC-CcCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence            9999999999999999998 999997655443332222111 111224456899999999999999999999999984

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=100.00  E-value=1.7e-35  Score=244.08  Aligned_cols=196  Identities=28%  Similarity=0.463  Sum_probs=161.4

Q ss_pred             CCCCCCCccceeeeeEe-eCCeEEEEEEccCCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYF-KNTDLWIVMEYCGAGSVSDIMRLRKK-TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~-~~~~~~lv~e~~~~gsL~~~~~~~~~-~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++|||++++++++. ++...+++|||+.+++|.++++.... .+++..+..++.|++.||.|||++|++|||||   
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk---  129 (256)
T cd05082          53 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLA---  129 (256)
T ss_pred             HHhCCCCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccc---
Confidence            35789999999999764 55679999999999999999975443 48899999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                    |+||+++.++.++++|||++.......   .....+..|+|||.+.+..+
T Consensus       130 ------------------------------p~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~  176 (256)
T cd05082         130 ------------------------------ARNVLVSEDNVAKVSDFGLTKEASSTQ---DTGKLPVKWTAPEALREKKF  176 (256)
T ss_pred             ------------------------------hheEEEcCCCcEEecCCccceeccccC---CCCccceeecCHHHHccCCC
Confidence                                          888899889999999999986543221   12233557999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++||||+||++|++++ |..||...+.......+......  ..+..+++.+.+++.+||+.+|++|||++++++
T Consensus       177 ~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  251 (256)
T cd05082         177 STKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKM--DAPDGCPPVVYDVMKQCWHLDAATRPSFLQLRE  251 (256)
T ss_pred             CchhhhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCC--CCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            999999999999999997 99999766555444444333222  235667999999999999999999999999974

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=100.00  E-value=1.6e-35  Score=248.67  Aligned_cols=199  Identities=26%  Similarity=0.516  Sum_probs=163.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-----------------------CCCCHHHHHHHHHHH
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-----------------------KTLSEDEIATILCDT   57 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-----------------------~~l~~~~~~~~~~~i   57 (251)
                      |+.++||||+++++.+......++++||+.+++|.+++....                       ..+++..+..++.|+
T Consensus        57 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i  136 (290)
T cd05045          57 LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQI  136 (290)
T ss_pred             HhhCCCCCEeeEEEEEecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHH
Confidence            357899999999999999999999999999999999986321                       247888999999999


Q ss_pred             HHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-
Q psy3253          58 LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-  136 (251)
Q Consensus        58 ~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-  136 (251)
                      +.||.|||+.|++|||||                                 |+||+++.++.++|+|||+++....... 
T Consensus       137 ~~~l~~LH~~~ivH~dik---------------------------------p~nill~~~~~~kl~dfg~~~~~~~~~~~  183 (290)
T cd05045         137 SRGMQYLAEMKLVHRDLA---------------------------------ARNVLVAEGRKMKISDFGLSRDVYEEDSY  183 (290)
T ss_pred             HHHHHHHHHCCeehhhhh---------------------------------hheEEEcCCCcEEeccccccccccCccch
Confidence            999999999999999988                                 8888888888999999999875432211 


Q ss_pred             -cccccccccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHH
Q psy3253         137 -KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDF  214 (251)
Q Consensus       137 -~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  214 (251)
                       ......++..|+|||.+.+..++.++||||||+++|+|++ |..||.+.........+....  ....+..++.++.++
T Consensus       184 ~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  261 (290)
T cd05045         184 VKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGY--RMERPENCSEEMYNL  261 (290)
T ss_pred             hcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCC--CCCCCCCCCHHHHHH
Confidence             1122234567999999988889999999999999999998 999997766555444333322  223356678999999


Q ss_pred             HHHhhhcCcCccCCHHHHhc
Q psy3253         215 VSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       215 i~~~l~~~p~~Rps~~evl~  234 (251)
                      +.+||+.+|++||+++|+++
T Consensus       262 i~~cl~~~P~~Rp~~~~i~~  281 (290)
T cd05045         262 MLTCWKQEPDKRPTFADISK  281 (290)
T ss_pred             HHHHccCCcccCCCHHHHHH
Confidence            99999999999999999974

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=100.00  E-value=1.6e-35  Score=251.54  Aligned_cols=198  Identities=26%  Similarity=0.479  Sum_probs=161.8

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHH
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLH   65 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH   65 (251)
                      +++ +||||+++++++......+++|||+.+|+|.+++....               ..+++.++..++.|++.||.|||
T Consensus        72 ~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH  151 (314)
T cd05099          72 KLIGKHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLE  151 (314)
T ss_pred             HhccCCCCeeeEEEEEccCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence            345 69999999999998889999999999999999997432               34788999999999999999999


Q ss_pred             hCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--cccccc
Q psy3253          66 LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIG  143 (251)
Q Consensus        66 ~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~  143 (251)
                      ++|++|||||                                 |+||+++.++.++|+|||.++........  .....+
T Consensus       152 ~~gi~H~dlk---------------------------------p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~  198 (314)
T cd05099         152 SRRCIHRDLA---------------------------------ARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRL  198 (314)
T ss_pred             HCCeeecccc---------------------------------ceeEEEcCCCcEEEccccccccccccccccccccCCC
Confidence            9999999988                                 88888888899999999999755422111  111123


Q ss_pred             ccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcC
Q psy3253         144 TPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN  222 (251)
Q Consensus       144 ~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  222 (251)
                      +..|+|||.+.+..++.++|+||||+++|++++ |..||.+.........+.....  ...+..++.++.+++.+||+.+
T Consensus       199 ~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~cl~~~  276 (314)
T cd05099         199 PVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEELFKLLREGHR--MDKPSNCTHELYMLMRECWHAV  276 (314)
T ss_pred             CccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC--CCCCCCCCHHHHHHHHHHcCCC
Confidence            456999999988889999999999999999998 8899977665554444433322  2235667889999999999999


Q ss_pred             cCccCCHHHHhc
Q psy3253         223 PEERATASEMLN  234 (251)
Q Consensus       223 p~~Rps~~evl~  234 (251)
                      |++|||++|+++
T Consensus       277 p~~Rps~~~ll~  288 (314)
T cd05099         277 PTQRPTFKQLVE  288 (314)
T ss_pred             cccCcCHHHHHH
Confidence            999999999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=100.00  E-value=1.4e-35  Score=245.71  Aligned_cols=199  Identities=30%  Similarity=0.573  Sum_probs=161.5

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      ++++||||+++++++..+...+++|||+.+++|.+++..   ....+++..+..++.|++.||.|||++|++|+|||   
T Consensus        57 ~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~---  133 (267)
T cd08229          57 KQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIK---  133 (267)
T ss_pred             HHccCCchhhhhheeEeCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC---
Confidence            568999999999999999999999999999999998863   23568999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                    |+||+++.++.++++|||.+..............++..|+|||.+.+..+
T Consensus       134 ------------------------------p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~  183 (267)
T cd08229         134 ------------------------------PANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGY  183 (267)
T ss_pred             ------------------------------HHHEEEcCCCCEEECcchhhhccccCCcccccccCCcCccCHHHhcCCCc
Confidence                                          88888888899999999998755433222233457788999999988889


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcc--hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPM--RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|+||+|+++|++++|..||.+....  .....+.....+.. .+..++.++.+++.+||+.||++|||+++|++
T Consensus       184 ~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~  260 (267)
T cd08229         184 NFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPL-PSDHYSEELRQLVNMCINPDPEKRPDITYVYD  260 (267)
T ss_pred             cchhhHHHHHHHHHHHHhCCCCcccccchHHHHhhhhhcCCCCCC-CcccccHHHHHHHHHhcCCCcccCCCHHHHHH
Confidence            99999999999999999999999644322  11122222111111 23457889999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=100.00  E-value=1.6e-35  Score=245.99  Aligned_cols=200  Identities=22%  Similarity=0.423  Sum_probs=160.5

Q ss_pred             CCCCCCCccceeeeeEeeC------CeEEEEEEccCCCCHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHhCCc
Q psy3253           1 MQQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLR-----KKTLSEDEIATILCDTLKGLEYLHLRRK   69 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~------~~~~lv~e~~~~gsL~~~~~~~-----~~~l~~~~~~~~~~~i~~~l~~LH~~~i   69 (251)
                      |++++||||+++++++...      ...+++|||+.+|+|.+++...     ...+++..+..++.|++.||.|||++|+
T Consensus        54 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i  133 (272)
T cd05075          54 MKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSF  133 (272)
T ss_pred             HHhCCCCCcceEEEEEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCe
Confidence            3578999999999977432      2578999999999999987422     2357899999999999999999999999


Q ss_pred             cccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccc
Q psy3253          70 IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFW  147 (251)
Q Consensus        70 iH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y  147 (251)
                      +|||||                                 |+||+++.++.++|+|||+++.......  ......+++.|
T Consensus       134 ~H~dlk---------------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~  180 (272)
T cd05075         134 IHRDLA---------------------------------ARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKW  180 (272)
T ss_pred             eccccc---------------------------------hhheEEcCCCCEEECCCCcccccCcccceecCCcccCCccc
Confidence            999988                                 8888888889999999999976543211  11222346679


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         148 MAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       148 ~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      +|||...+..++.++|+|||||++|++++ |..||.+.........+......  ..+..++..+.+++.+||..||++|
T Consensus       181 ~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~R  258 (272)
T cd05075         181 IAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENSEIYDYLRQGNRL--KQPPDCLDGLYSLMSSCWLLNPKDR  258 (272)
T ss_pred             CCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcCCCcccC
Confidence            99999988889999999999999999999 88999776655544444333222  2345678999999999999999999


Q ss_pred             CCHHHHhcC
Q psy3253         227 ATASEMLNH  235 (251)
Q Consensus       227 ps~~evl~h  235 (251)
                      ||++|++++
T Consensus       259 ps~~~l~~~  267 (272)
T cd05075         259 PSFETLRCE  267 (272)
T ss_pred             cCHHHHHHH
Confidence            999999864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=100.00  E-value=1.8e-35  Score=245.39  Aligned_cols=199  Identities=26%  Similarity=0.478  Sum_probs=161.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh------CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR------KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~------~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |++++||||+++++++......+++|||+.+++|.+++...      ...+++.+++.++.|++.||.|||+.+++|+||
T Consensus        53 l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl  132 (269)
T cd05044          53 MSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDL  132 (269)
T ss_pred             HHhcCCCCeeeEeeeecCCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            46789999999999999888999999999999999999632      234788999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCC-----CeEecccccccccCcccc--ccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-----HAKLADFGVAGQLTDTMA--KRNTVIGTPFW  147 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~-----~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y  147 (251)
                      |                                 |+||+++.++     .++++|||++........  ......++..|
T Consensus       133 ~---------------------------------p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y  179 (269)
T cd05044         133 A---------------------------------ARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRW  179 (269)
T ss_pred             C---------------------------------hheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccc
Confidence            8                                 6666666555     799999999865432211  11223446779


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         148 MAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       148 ~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      +|||.+.+..++.++|||||||++|++++ |..||...+.......+....  ....+..++..+.+++.+||..+|++|
T Consensus       180 ~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~R  257 (269)
T cd05044         180 MAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVLQHVTAGG--RLQKPENCPDKIYQLMTNCWAQDPSER  257 (269)
T ss_pred             cCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhcCC--ccCCcccchHHHHHHHHHHcCCCcccC
Confidence            99999988889999999999999999998 999997665554444333322  223355678999999999999999999


Q ss_pred             CCHHHHhc
Q psy3253         227 ATASEMLN  234 (251)
Q Consensus       227 ps~~evl~  234 (251)
                      |+++++++
T Consensus       258 p~~~~i~~  265 (269)
T cd05044         258 PTFDRIQE  265 (269)
T ss_pred             CCHHHHHH
Confidence            99999874

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=100.00  E-value=3.4e-35  Score=249.96  Aligned_cols=204  Identities=47%  Similarity=0.856  Sum_probs=168.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||++++++++.++...++||||+. |+|.+++......+++.++..++.|++.||.|||+.|++||||+     
T Consensus        79 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~-----  152 (317)
T cd06635          79 LQRIKHPNSIEYKGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIK-----  152 (317)
T ss_pred             HHhCCCCCEEEEEEEEeeCCeEEEEEeCCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----
Confidence            356899999999999999999999999996 58888876566789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc---cCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---EIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~  157 (251)
                                                  |+||+++.++.++|+|||++......    ....++..|+|||.+.   ...
T Consensus       153 ----------------------------p~Nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~  200 (317)
T cd06635         153 ----------------------------AGNILLTEPGQVKLADFGSASIASPA----NSFVGTPYWMAPEVILAMDEGQ  200 (317)
T ss_pred             ----------------------------cccEEECCCCCEEEecCCCccccCCc----ccccCCccccChhhhhcCCCCC
Confidence                                        88888888899999999988643322    2345678899999974   356


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      ++.++|+||+||++|+|++|..||...+.......+........ ....+++.+.+++.+||+.+|++||+++++++|+|
T Consensus       201 ~~~~~Dv~slGvil~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~  279 (317)
T cd06635         201 YDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPTL-QSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMF  279 (317)
T ss_pred             CCccccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhccCCCC-CCccccHHHHHHHHHHccCCcccCcCHHHHHhChh
Confidence            78899999999999999999999977655444443333322222 23457889999999999999999999999999999


Q ss_pred             hhhccC
Q psy3253         238 IQRHDT  243 (251)
Q Consensus       238 ~~~~~~  243 (251)
                      +....-
T Consensus       280 ~~~~~~  285 (317)
T cd06635         280 VLRERP  285 (317)
T ss_pred             hhccCc
Confidence            965443

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=100.00  E-value=2e-35  Score=243.33  Aligned_cols=200  Identities=25%  Similarity=0.457  Sum_probs=165.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||++++++++......+++|||+.+++|.+++......+++..+..++.|++.||.+||+.|++|+|||     
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~-----  127 (256)
T cd05112          53 MMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLA-----  127 (256)
T ss_pred             HHhCCCCCeeeEEEEEccCCceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccc-----
Confidence            357899999999999999999999999999999999997656678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-ccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++|+|||.+......... .....++..|+|||.+.+..++
T Consensus       128 ----------------------------p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~  179 (256)
T cd05112         128 ----------------------------ARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYS  179 (256)
T ss_pred             ----------------------------cceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHhHhccCCcC
Confidence                                        88888888889999999998654322111 1122245679999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++|+||+|+++|++++ |..||...........+......  ..+...+.++.+++.+||..+|++|||++|++++
T Consensus       180 ~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~  254 (256)
T cd05112         180 SKSDVWSFGVLMWEVFSEGKTPYENRSNSEVVETINAGFRL--YKPRLASQSVYELMQHCWKERPEDRPSFSLLLHQ  254 (256)
T ss_pred             hHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHhCCCCC--CCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHh
Confidence            99999999999999998 99999776655555444333221  2245568999999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=100.00  E-value=3.3e-36  Score=257.97  Aligned_cols=210  Identities=25%  Similarity=0.454  Sum_probs=163.9

Q ss_pred             CCCCCCCccceeeeeEee----CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~----~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      |++++||||+++++++..    ....++||||+. ++|.+++. ....+++..+..++.|++.||.|||++|++||||| 
T Consensus        58 l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk-  134 (334)
T cd07855          58 LRHFKHDNIIAIRDILRPPGADFKDVYVVMDLME-SDLHHIIH-SDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLK-  134 (334)
T ss_pred             HHhcCCCCccCHHHhccccCCCCceEEEEEehhh-hhHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-
Confidence            457899999999998863    356899999995 58999886 45669999999999999999999999999999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc----ccccccccccccccc
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK----RNTVIGTPFWMAPEV  152 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~----~~~~~~~~~y~aPE~  152 (251)
                                                      |+||+++.++.++|+|||.+.........    .....++..|+|||.
T Consensus       135 --------------------------------p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~  182 (334)
T cd07855         135 --------------------------------PSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPEL  182 (334)
T ss_pred             --------------------------------HHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHH
Confidence                                            88999999999999999998654332111    123357788999999


Q ss_pred             ccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---CCC--------------------CC--CCC---CC
Q psy3253         153 IQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---PTK--------------------PP--PSF---RE  203 (251)
Q Consensus       153 ~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---~~~--------------------~~--~~~---~~  203 (251)
                      +.+ ..++.++|+||+||++|+|++|.+||.+.+.......+   ...                    .+  ...   ..
T Consensus       183 ~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (334)
T cd07855         183 LLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKI  262 (334)
T ss_pred             hcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHH
Confidence            865 45788999999999999999999999655432211100   000                    00  000   01


Q ss_pred             CCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         204 PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       204 ~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      ....+.++.++|++||+.+|++|||+++++.||||++.....
T Consensus       263 ~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~~~~  304 (334)
T cd07855         263 FPKASPEALDLLSQMLQFDPEERITVEQALQHPFLAQYHDPD  304 (334)
T ss_pred             cccCCHHHHHHHHHHccCChhhCcCHHHHHhChhhhhccCCc
Confidence            134688999999999999999999999999999998765544

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=100.00  E-value=1.9e-35  Score=246.78  Aligned_cols=197  Identities=25%  Similarity=0.427  Sum_probs=161.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||+++++++.+. ..++++||+.+|+|.++++.....+++..++.++.|++.||.|||++|++|||||      
T Consensus        64 ~~~~~~~i~~~~~~~~~~-~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlk------  136 (279)
T cd05109          64 AGVGSPYVCRLLGICLTS-TVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLA------  136 (279)
T ss_pred             HhcCCCCCceEEEEEcCC-CcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccc------
Confidence            467899999999999754 4789999999999999997656679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--ccccccccccccccccccCCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                 |+||+++.++.++|+|||+++........  .....++..|+|||...+..++
T Consensus       137 ---------------------------p~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~  189 (279)
T cd05109         137 ---------------------------ARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFT  189 (279)
T ss_pred             ---------------------------cceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCC
Confidence                                       88888888888999999999765422111  1112235679999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .++|||||||++|++++ |..||...........+......  ..+..++.++.+++.+||..||++||++.|++.
T Consensus       190 ~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~  263 (279)
T cd05109         190 HQSDVWSYGVTVWELMTFGAKPYDGIPAREIPDLLEKGERL--PQPPICTIDVYMIMVKCWMIDSECRPRFRELVD  263 (279)
T ss_pred             chhHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHCCCcC--CCCccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            99999999999999998 99999766554444333332222  224567899999999999999999999999983

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=100.00  E-value=1.1e-35  Score=244.35  Aligned_cols=201  Identities=30%  Similarity=0.553  Sum_probs=169.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      |++++||||+++++++.++...++||||+++++|.+++...   ...+++..+..++.|++.||.|||+.|++|+||+  
T Consensus        53 l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~--  130 (256)
T cd08530          53 LASVNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLK--  130 (256)
T ss_pred             HHhCCCCCchhhhhhhccCCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCC--
Confidence            35789999999999999999999999999999999998642   3568999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                     |.||+++.++.++++|||++......  ......++..|+|||.+.+..
T Consensus       131 -------------------------------~~ni~~~~~~~~kl~d~g~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~  177 (256)
T cd08530         131 -------------------------------SANILLVANDLVKIGDLGISKVLKKN--MAKTQIGTPHYMAPEVWKGRP  177 (256)
T ss_pred             -------------------------------cceEEEecCCcEEEeeccchhhhccC--CcccccCCccccCHHHHCCCC
Confidence                                           88888888889999999999765543  222245678899999998888


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      ++.++|+||+|+++|++++|..||...+.......+.......  .+..++.++.+++.+||..+|++|||++|+++||+
T Consensus       178 ~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~p~  255 (256)
T cd08530         178 YSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPP--IPPIYSQDLQNFIRSMLQVKPKLRPNCDKILASPA  255 (256)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCC--CchhhCHHHHHHHHHHcCCCcccCCCHHHHhcCCC
Confidence            9999999999999999999999998776654444443333222  23467899999999999999999999999999997


Q ss_pred             h
Q psy3253         238 I  238 (251)
Q Consensus       238 ~  238 (251)
                      +
T Consensus       256 ~  256 (256)
T cd08530         256 V  256 (256)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=100.00  E-value=1.6e-35  Score=250.82  Aligned_cols=198  Identities=24%  Similarity=0.467  Sum_probs=161.8

Q ss_pred             CC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHHh
Q psy3253           3 QC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLHL   66 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH~   66 (251)
                      .+ +||||+++++++......|+||||+.+|+|.+++....               ..+++.+++.++.|++.||+|||+
T Consensus        79 ~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~  158 (307)
T cd05098          79 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLAS  158 (307)
T ss_pred             HhcCCCCEeeEEEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            45 79999999999999999999999999999999997432               247889999999999999999999


Q ss_pred             CCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc--cccccc
Q psy3253          67 RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR--NTVIGT  144 (251)
Q Consensus        67 ~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~--~~~~~~  144 (251)
                      .|++|||||                                 |+||+++.++.++|+|||.+..........  ....++
T Consensus       159 ~gi~H~dlk---------------------------------p~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~  205 (307)
T cd05098         159 KKCIHRDLA---------------------------------ARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP  205 (307)
T ss_pred             CCccccccc---------------------------------HHheEEcCCCcEEECCCcccccccccchhhccccCCCc
Confidence            999999988                                 888888888999999999986543221111  112234


Q ss_pred             cccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCc
Q psy3253         145 PFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP  223 (251)
Q Consensus       145 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  223 (251)
                      ..|+|||.+.+..++.++|+||+||++|+|++ |..||.+.........+.....  ...+..++.++.+++.+||..+|
T Consensus       206 ~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p  283 (307)
T cd05098         206 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHR--MDKPSNCTNELYMMMRDCWHAVP  283 (307)
T ss_pred             cceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHHHcCCC--CCCCCcCCHHHHHHHHHHcccCh
Confidence            57999999988889999999999999999998 8889876655444443333322  22355678999999999999999


Q ss_pred             CccCCHHHHhcC
Q psy3253         224 EERATASEMLNH  235 (251)
Q Consensus       224 ~~Rps~~evl~h  235 (251)
                      ++|||++|++++
T Consensus       284 ~~Rps~~evl~~  295 (307)
T cd05098         284 SQRPTFKQLVED  295 (307)
T ss_pred             hhCcCHHHHHHH
Confidence            999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=5.7e-36  Score=256.82  Aligned_cols=209  Identities=28%  Similarity=0.452  Sum_probs=163.4

Q ss_pred             CCCCCCccceeeeeEeeC-----CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKN-----TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~-----~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      +.++||||+++++++...     ...|+++||+. ++|.+++. ....+++..+..++.|++.||.|||++|++||||| 
T Consensus        59 ~~l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlk-  135 (337)
T cd07858          59 RHLDHENVIAIKDIMPPPHREAFNDVYIVYELMD-TDLHQIIR-SSQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLK-  135 (337)
T ss_pred             HhcCCCCccchHHheecccccccCcEEEEEeCCC-CCHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC-
Confidence            467999999999988643     35899999995 68998886 45679999999999999999999999999999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-  155 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  155 (251)
                                                      |+||+++.++.++|+|||++..............++..|+|||.+.. 
T Consensus       136 --------------------------------p~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  183 (337)
T cd07858         136 --------------------------------PSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNC  183 (337)
T ss_pred             --------------------------------HHHEEEcCCCCEEECcCccccccCCCcccccccccccCccChHHHhcC
Confidence                                            88888888899999999999765433222233456788999998864 


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---------------------------CCCCCCC-CCCCCCC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---------------------------PTKPPPS-FREPDVW  207 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---------------------------~~~~~~~-~~~~~~~  207 (251)
                      ..++.++|+||+||++|+|++|.+||.+.+.......+                           ....... ......+
T Consensus       184 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (337)
T cd07858         184 SEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHA  263 (337)
T ss_pred             CCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccC
Confidence            46889999999999999999999999654321111000                           0000000 0112357


Q ss_pred             CHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         208 TPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       208 ~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      ++++.++|.+||+.+|++|||++|+++||||.......
T Consensus       264 ~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~~  301 (337)
T cd07858         264 NPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDPS  301 (337)
T ss_pred             CHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcCcc
Confidence            88999999999999999999999999999998754443

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=100.00  E-value=7.5e-36  Score=253.12  Aligned_cols=204  Identities=21%  Similarity=0.420  Sum_probs=156.7

Q ss_pred             CCCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHh----CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLR----KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~----~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |++++||||+++++++.+.  ...++||||+++ +|.+++...    ...+++..++.++.|++.||.|||+.|++||||
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dl  134 (316)
T cd07842          56 LRELKHENVVSLVEVFLEHADKSVYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDL  134 (316)
T ss_pred             HHhcCCCCccceEEEEeCCCCceEEEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCC
Confidence            3578999999999999887  789999999965 777776422    136899999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCC----CCCeEecccccccccCcccc---ccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT----EGHAKLADFGVAGQLTDTMA---KRNTVIGTPFW  147 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~----~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y  147 (251)
                      |                                 |+||+++.    ++.++|+|||++........   ......++..|
T Consensus       135 k---------------------------------p~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y  181 (316)
T cd07842         135 K---------------------------------PANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWY  181 (316)
T ss_pred             C---------------------------------HHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccc
Confidence            8                                 77777777    88899999999876543221   12233467889


Q ss_pred             cccccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh-------------hhhcC-------------------
Q psy3253         148 MAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA-------------IFMIP-------------------  194 (251)
Q Consensus       148 ~aPE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~-------------~~~~~-------------------  194 (251)
                      +|||.+.+ ..++.++|+|||||++|+|++|.+||.+......             ...+.                   
T Consensus       182 ~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  261 (316)
T cd07842         182 RAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTL  261 (316)
T ss_pred             cCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhh
Confidence            99998865 4578899999999999999999999965433220             00000                   


Q ss_pred             --CCCCCCCC---------CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         195 --TKPPPSFR---------EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       195 --~~~~~~~~---------~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                        ........         .....+.++.+++.+||++||++|||++|+++||||
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         262 MKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             hhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcCCCC
Confidence              00000000         011456789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=100.00  E-value=2.1e-35  Score=245.14  Aligned_cols=199  Identities=22%  Similarity=0.441  Sum_probs=155.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK----KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~----~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      +.++||||+++++.+.+....++||||+.+|+|.+++....    ..+++..++.++.||+.||.|||++|++|||||  
T Consensus        50 ~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk--  127 (269)
T cd05042          50 RELNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLA--  127 (269)
T ss_pred             HhCCCCCcceEEEEECCCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEeccccc--
Confidence            46799999999999999999999999999999999997433    234677889999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~  155 (251)
                                                     |+||+++.++.++|+|||++........  ......++..|+|||++..
T Consensus       128 -------------------------------p~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  176 (269)
T cd05042         128 -------------------------------LRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEI  176 (269)
T ss_pred             -------------------------------HhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhh
Confidence                                           8899999999999999999864322111  1122234567999998742


Q ss_pred             -------CCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCC---CCCCCCCCCCHHHHHHHHHhhhcCcC
Q psy3253         156 -------IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPP---PSFREPDVWTPEFIDFVSRCLVKNPE  224 (251)
Q Consensus       156 -------~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~p~  224 (251)
                             ..++.++||||+||++|+|++ |..||.................   +....+..++..+.+++..|+ .||+
T Consensus       177 ~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dp~  255 (269)
T cd05042         177 RGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LDPE  255 (269)
T ss_pred             ccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-cCcc
Confidence                   346789999999999999999 7888876654443332222211   111224467889999999998 5999


Q ss_pred             ccCCHHHHhc
Q psy3253         225 ERATASEMLN  234 (251)
Q Consensus       225 ~Rps~~evl~  234 (251)
                      +|||++||++
T Consensus       256 ~Rpt~~~v~~  265 (269)
T cd05042         256 TRPTAEEVHE  265 (269)
T ss_pred             cccCHHHHHH
Confidence            9999999975

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=2.4e-35  Score=242.98  Aligned_cols=192  Identities=24%  Similarity=0.392  Sum_probs=153.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.. ...++||||+.+|+|.+++......+++..+..++.||+.||.|||++|++|||||     
T Consensus        55 l~~l~h~~i~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlk-----  128 (259)
T cd05037          55 MSQLSHKHLVKLYGVCVR-DENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVC-----  128 (259)
T ss_pred             HHcCCCcchhheeeEEec-CCcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCc-----
Confidence            467899999999999988 77899999999999999998555579999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCC-------CeEecccccccccCccccccccccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-------HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~-------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  153 (251)
                                                  |+||+++.++       .++++|||.+.....    .....++..|+|||.+
T Consensus       129 ----------------------------p~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~----~~~~~~~~~y~aPE~~  176 (259)
T cd05037         129 ----------------------------GKNILVARYGLNEGYVPFIKLSDPGIPITVLS----REERVERIPWIAPECI  176 (259)
T ss_pred             ----------------------------cceEEEecCccccCCceeEEeCCCCccccccc----ccccccCCCccChhhh
Confidence                                        5666665555       699999999875433    1223456679999999


Q ss_pred             ccC--CCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         154 QEI--GYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       154 ~~~--~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      .+.  .++.++|+||+|+++|++++ |..||...+............  .  .+.....++.+++.+||..+|++|||+.
T Consensus       177 ~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~li~~~l~~~p~~Rpt~~  252 (259)
T cd05037         177 RNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSEKERFYQDQH--R--LPMPDCAELANLINQCWTYDPTKRPSFR  252 (259)
T ss_pred             cCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchhHHHHHhcCC--C--CCCCCchHHHHHHHHHhccChhhCCCHH
Confidence            776  78899999999999999999 578886654332222111111  1  1222348899999999999999999999


Q ss_pred             HHhc
Q psy3253         231 EMLN  234 (251)
Q Consensus       231 evl~  234 (251)
                      |+++
T Consensus       253 ~il~  256 (259)
T cd05037         253 AILR  256 (259)
T ss_pred             HHHH
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=100.00  E-value=2e-35  Score=245.29  Aligned_cols=200  Identities=23%  Similarity=0.439  Sum_probs=162.5

Q ss_pred             CCCCCCCccceeeeeEeeCCe------EEEEEEccCCCCHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHhCCc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTD------LWIVMEYCGAGSVSDIMRLR-----KKTLSEDEIATILCDTLKGLEYLHLRRK   69 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~------~~lv~e~~~~gsL~~~~~~~-----~~~l~~~~~~~~~~~i~~~l~~LH~~~i   69 (251)
                      |++++||||+++++++.....      .+++|||+.+|+|..++...     ...+++..+..++.|++.||.|||++|+
T Consensus        55 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i  134 (273)
T cd05035          55 MKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNF  134 (273)
T ss_pred             HHhCCCCCeeeEEeeeccCCccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence            356899999999998865443      79999999999999988532     2368999999999999999999999999


Q ss_pred             cccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--cccccccccc
Q psy3253          70 IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIGTPFW  147 (251)
Q Consensus        70 iH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y  147 (251)
                      +|||||                                 |+||+++.++.++|+|||.++........  .....++..|
T Consensus       135 ~H~dlk---------------------------------p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~  181 (273)
T cd05035         135 IHRDLA---------------------------------ARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKW  181 (273)
T ss_pred             eccccc---------------------------------hheEEECCCCeEEECCccceeeccccccccccccccCCccc
Confidence            999988                                 88888888899999999998755332211  1112245679


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         148 MAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       148 ~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      +|||.+.+..++.++||||+||++|++++ |.+||.+.........+.....  ...+..++..+.+++.+||+.||++|
T Consensus       182 ~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~R  259 (273)
T cd05035         182 IAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENHEIYDYLRHGNR--LKQPEDCLDELYDLMYSCWRADPKDR  259 (273)
T ss_pred             cCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC--CCCCcCCCHHHHHHHHHHcCCChhhC
Confidence            99999988889999999999999999999 8999977665555544443332  23356789999999999999999999


Q ss_pred             CCHHHHhcC
Q psy3253         227 ATASEMLNH  235 (251)
Q Consensus       227 ps~~evl~h  235 (251)
                      ||+.|++.+
T Consensus       260 p~~~e~~~~  268 (273)
T cd05035         260 PTFTKLREV  268 (273)
T ss_pred             cCHHHHHHH
Confidence            999999854

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.5e-35  Score=242.05  Aligned_cols=196  Identities=27%  Similarity=0.476  Sum_probs=163.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.+....++||||+.+++|.+++.... ..+++..+..++.|++.||.|||+.|++|+|||    
T Consensus        54 l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~----  129 (256)
T cd05039          54 MTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLA----  129 (256)
T ss_pred             HHhcCCcceeeeEEEEcCCCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcc----
Confidence            357899999999999998889999999999999999997443 368999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||.+........   ....+..|+|||.+....++
T Consensus       130 -----------------------------p~Nili~~~~~~~l~d~g~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~  177 (256)
T cd05039         130 -----------------------------ARNVLVSEDLVAKVSDFGLAKEASQGQD---SGKLPVKWTAPEALREKKFS  177 (256)
T ss_pred             -----------------------------cceEEEeCCCCEEEcccccccccccccc---cCCCcccccCchhhcCCcCC
Confidence                                         8889998899999999999976532211   22345569999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .++|+||+|+++|++++ |..||...........+.....  ...+..+++++.+++.+||..+|++|||++|+++
T Consensus       178 ~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  251 (256)
T cd05039         178 TKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPHVEKGYR--MEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLRE  251 (256)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhcCCC--CCCccCCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence            99999999999999997 9999976655544433333322  2234567899999999999999999999999984

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=100.00  E-value=3.4e-35  Score=244.02  Aligned_cols=200  Identities=23%  Similarity=0.403  Sum_probs=154.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK----KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~----~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      |++++||||+++++++.+....++||||+.+|+|.++++...    ..+++..++.++.|++.||.|||+.|++|+||| 
T Consensus        49 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlk-  127 (269)
T cd05087          49 YRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLA-  127 (269)
T ss_pred             HHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccC-
Confidence            357899999999999998889999999999999999996432    245677888999999999999999999999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccc
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~  154 (251)
                                                      |+||+++.+++++|+|||.+........  ......++..|+|||++.
T Consensus       128 --------------------------------p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  175 (269)
T cd05087         128 --------------------------------LRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVD  175 (269)
T ss_pred             --------------------------------cceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhc
Confidence                                            7888888888999999999864332211  112234567799999985


Q ss_pred             cC-------CCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCC---CCCCCCCHHHHHHHHHhhhcCc
Q psy3253         155 EI-------GYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSF---REPDVWTPEFIDFVSRCLVKNP  223 (251)
Q Consensus       155 ~~-------~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~li~~~l~~~p  223 (251)
                      +.       .++.++|+||+|+++|++++ |..||....................   ......++.+.+++++|+ .+|
T Consensus       176 ~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P  254 (269)
T cd05087         176 EVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQVLTYTVREQQLKLPKPRLKLPLSDRWYEVMQFCW-LQP  254 (269)
T ss_pred             cccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHHHHHHHhhcccCCCCCCccCCCCChHHHHHHHHHh-cCc
Confidence            42       35789999999999999996 9999976554443322111111111   112346788999999998 689


Q ss_pred             CccCCHHHHhc
Q psy3253         224 EERATASEMLN  234 (251)
Q Consensus       224 ~~Rps~~evl~  234 (251)
                      ++|||++|++.
T Consensus       255 ~~Rpt~~~l~~  265 (269)
T cd05087         255 EQRPSAEEVHL  265 (269)
T ss_pred             ccCCCHHHHHH
Confidence            99999999974

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=100.00  E-value=2.6e-35  Score=249.04  Aligned_cols=199  Identities=23%  Similarity=0.457  Sum_probs=163.6

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHH
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLH   65 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH   65 (251)
                      +.+ +||||+++++++......+++|||+.+|+|.+++....               ..++...+..++.||+.||.|||
T Consensus        75 ~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH  154 (304)
T cd05101          75 KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLA  154 (304)
T ss_pred             HhhccCCCchheeEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            356 79999999999999999999999999999999997432               24678889999999999999999


Q ss_pred             hCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--cccccc
Q psy3253          66 LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIG  143 (251)
Q Consensus        66 ~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~  143 (251)
                      ++|++|||||                                 |+||+++.++.++|+|||.++........  .....+
T Consensus       155 ~~givH~dlk---------------------------------p~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~  201 (304)
T cd05101         155 SQKCIHRDLA---------------------------------ARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRL  201 (304)
T ss_pred             HCCeeecccc---------------------------------cceEEEcCCCcEEECCCccceecccccccccccCCCC
Confidence            9999999988                                 88888888899999999999765432211  122234


Q ss_pred             ccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcC
Q psy3253         144 TPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN  222 (251)
Q Consensus       144 ~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  222 (251)
                      +..|+|||.+.+..++.++||||||+++|++++ |..||.+.........+.....  ...+..++.++.+++.+||..+
T Consensus       202 ~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~cl~~~  279 (304)
T cd05101         202 PVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHR--MDKPANCTNELYMMMRDCWHAI  279 (304)
T ss_pred             CceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCc--CCCCCCCCHHHHHHHHHHcccC
Confidence            567999999988889999999999999999998 7888877666555544433322  2235567899999999999999


Q ss_pred             cCccCCHHHHhcC
Q psy3253         223 PEERATASEMLNH  235 (251)
Q Consensus       223 p~~Rps~~evl~h  235 (251)
                      |++|||+.|+++.
T Consensus       280 p~~Rps~~e~l~~  292 (304)
T cd05101         280 PSHRPTFKQLVED  292 (304)
T ss_pred             hhhCCCHHHHHHH
Confidence            9999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0612|consensus

Probab=100.00  E-value=1.9e-36  Score=277.71  Aligned_cols=206  Identities=29%  Similarity=0.448  Sum_probs=177.2

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +++=|++++.+|++..++||||||+.||+|-.++.... .+++..++.++..|+.||..+|+.|+||||||         
T Consensus       133 ns~Wiv~LhyAFQD~~~LYlVMdY~pGGDlltLlSk~~-~~pE~~ArFY~aEiVlAldslH~mgyVHRDiK---------  202 (1317)
T KOG0612|consen  133 NSEWIVQLHYAFQDERYLYLVMDYMPGGDLLTLLSKFD-RLPEDWARFYTAEIVLALDSLHSMGYVHRDIK---------  202 (1317)
T ss_pred             CcHHHHHHHHHhcCccceEEEEecccCchHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHHhccceeccCC---------
Confidence            56779999999999999999999999999999998444 89999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccC-cccccccccccccccccccccc----c-CCC
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT-DTMAKRNTVIGTPFWMAPEVIQ----E-IGY  158 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~-~~~~~~~~~~~~~~y~aPE~~~----~-~~~  158 (251)
                                              |+||+++..|++||+|||.|.... +........+|||-|.|||++.    + +.|
T Consensus       203 ------------------------PDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~y  258 (1317)
T KOG0612|consen  203 ------------------------PDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEY  258 (1317)
T ss_pred             ------------------------cceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCcccc
Confidence                                    999999999999999999998776 4445567789999999999994    2 568


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC---HHHHhc
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERAT---ASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps---~~evl~  234 (251)
                      ++.+|-||+||++|+|+.|..||....-...+..|..- ....++....+|.+..+||.+++. +|+.|..   ++++-+
T Consensus       259 G~ecDwWSlGV~~YEMlyG~TPFYadslveTY~KIm~hk~~l~FP~~~~VSeeakdLI~~ll~-~~e~RLgrngiedik~  337 (1317)
T KOG0612|consen  259 GRECDWWSLGVFMYEMLYGETPFYADSLVETYGKIMNHKESLSFPDETDVSEEAKDLIEALLC-DREVRLGRNGIEDIKN  337 (1317)
T ss_pred             CCccchhhhHHHHHHHHcCCCcchHHHHHHHHHHHhchhhhcCCCcccccCHHHHHHHHHHhc-ChhhhcccccHHHHHh
Confidence            88999999999999999999999766555555544432 233333335589999999999876 4889988   999999


Q ss_pred             ChhhhhccCCC
Q psy3253         235 HEFIQRHDTDP  245 (251)
Q Consensus       235 hp~~~~~~~~~  245 (251)
                      ||||.+.+|+.
T Consensus       338 HpFF~g~~W~~  348 (1317)
T KOG0612|consen  338 HPFFEGIDWDN  348 (1317)
T ss_pred             CccccCCChhh
Confidence            99999999954

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=100.00  E-value=3.1e-35  Score=249.20  Aligned_cols=202  Identities=45%  Similarity=0.843  Sum_probs=166.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||++++++++......++||||+. |+|.+++......+++.++..++.|++.||.|||+.|++|||||     
T Consensus        69 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~-----  142 (308)
T cd06634          69 LQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVK-----  142 (308)
T ss_pred             HHhCCCCCcccEEEEEEcCCeeEEEEEccC-CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC-----
Confidence            356899999999999999999999999996 58888876556779999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc---cCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---EIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~  157 (251)
                                                  |+||+++.++.++++|||++......    ....++..|+|||.+.   ...
T Consensus       143 ----------------------------p~nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~  190 (308)
T cd06634         143 ----------------------------AGNILLSEPGLVKLGDFGSASIMAPA----NXFVGTPYWMAPEVILAMDEGQ  190 (308)
T ss_pred             ----------------------------HHhEEECCCCcEEECCcccceeecCc----ccccCCccccCHHHHhhcccCC
Confidence                                        88889888899999999998654322    2235678899999974   345


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      ++.++||||+||++|++++|..||...+.......+.....+.. ....++..+.++|.+||..+|++||+++++++|||
T Consensus       191 ~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~  269 (308)
T cd06634         191 YDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPAL-QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRF  269 (308)
T ss_pred             CCcccchHHHHHHHHHHHcCCCCCccccHHHHHHHHhhcCCCCc-CcccccHHHHHHHHHHhhCCcccCCCHHHHhhCcc
Confidence            78899999999999999999999976654443333333322221 23457889999999999999999999999999999


Q ss_pred             hhhc
Q psy3253         238 IQRH  241 (251)
Q Consensus       238 ~~~~  241 (251)
                      +...
T Consensus       270 ~~~~  273 (308)
T cd06634         270 VLRE  273 (308)
T ss_pred             cccc
Confidence            9764

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0586|consensus

Probab=100.00  E-value=2.7e-36  Score=262.50  Aligned_cols=205  Identities=26%  Similarity=0.461  Sum_probs=177.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+.++|||||+++++......+|+||||+.+|.+++++. +.+...+..+..++.|++.|++|||+++|+|||||     
T Consensus       109 mk~l~HPnIvkl~~v~~t~~~lylV~eya~~ge~~~yl~-~~gr~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk-----  182 (596)
T KOG0586|consen  109 MKSLNHPNIVKLFSVIETEATLYLVMEYASGGELFDYLV-KHGRMKEKEARAKFRQIVSAVEYCHSKNIVHRDLK-----  182 (596)
T ss_pred             HHhcCCcceeeeeeeeeecceeEEEEEeccCchhHHHHH-hcccchhhhhhhhhHHHHHHHHHHhhcceeccccc-----
Confidence            578999999999999999999999999999999999998 56677779999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC-
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD-  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-  159 (251)
                                                  .+|++++.+..+||+|||++..+... .......|++.|.|||++.+.++. 
T Consensus       183 ----------------------------~eNilL~~~mnikIaDfgfS~~~~~~-~~lqt~cgsppyAaPEl~~g~~y~g  233 (596)
T KOG0586|consen  183 ----------------------------AENILLDENMNIKIADFGFSTFFDYG-LMLQTFCGSPPYAAPELFNGKKYDG  233 (596)
T ss_pred             ----------------------------hhhcccccccceeeeccccceeeccc-ccccccCCCCCccChHhhcCcccCC
Confidence                                        77889999999999999999766533 344566789999999999987764 


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ  239 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~  239 (251)
                      +.+|+||+|+++|.++.|..||.+.+-..........   .+..+..++.++.++|.++|.++|.+|+++++++.|.|..
T Consensus       234 pe~D~Wslgvvly~LV~GsLPFDG~~lk~Lr~rvl~g---k~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim~~~W~n  310 (596)
T KOG0586|consen  234 PEVDIWSLGVVLYALVEGSLPFDGQNLKELRPRVLRG---KYRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKDRWRN  310 (596)
T ss_pred             cceehhhhhhhheeeeecccccCCcccccccchheee---eecccceeechhHHHHHHhhccCccccCCHHHhhhhcccc
Confidence            5799999999999999999999876555444333332   4455777899999999999999999999999999999986


Q ss_pred             hccC
Q psy3253         240 RHDT  243 (251)
Q Consensus       240 ~~~~  243 (251)
                      ....
T Consensus       311 ~~~~  314 (596)
T KOG0586|consen  311 DLLE  314 (596)
T ss_pred             hhhh
Confidence            5433

>KOG0587|consensus

Probab=100.00  E-value=5.1e-36  Score=269.09  Aligned_cols=206  Identities=50%  Similarity=0.964  Sum_probs=190.0

Q ss_pred             CCCCCccceeeeeEe-----eCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           3 QCDSPYVVKYYGSYF-----KNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         3 ~l~hpniv~l~~~~~-----~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      ..+|||++.+|++|.     .++.++||||||.|||..++++.. +..+.|..+.-++..++.|+.+||...++||||| 
T Consensus        72 ~~~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDik-  150 (953)
T KOG0587|consen   72 YSHHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIK-  150 (953)
T ss_pred             ccCCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeeccc-
Confidence            348999999999996     456799999999999999999733 4678899999999999999999999999999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccC
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI  156 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  156 (251)
                                                      -.||+++.++.+|+.|||.+.+.+....+..+..||++|||||++...
T Consensus       151 --------------------------------G~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~  198 (953)
T KOG0587|consen  151 --------------------------------GQNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACD  198 (953)
T ss_pred             --------------------------------CceEEEeccCcEEEeeeeeeeeeecccccccCcCCCcccccceeeecc
Confidence                                            889999999999999999999988887888999999999999999643


Q ss_pred             -----CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHH
Q psy3253         157 -----GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE  231 (251)
Q Consensus       157 -----~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  231 (251)
                           .|+..+|+||||++..+|..|.+|+.+.-+....+.+..++++.+..+..++.+|.++|..||..|.++||+..+
T Consensus       199 e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmraLF~IpRNPPPkLkrp~kWs~~FndFIs~cL~Kd~e~RP~~~~  278 (953)
T KOG0587|consen  199 ESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPKLKRPKKWSKKFNDFISTCLVKDYEQRPSTEE  278 (953)
T ss_pred             cCCCCCcccccchhhccceeehhcCCCCCccCcchhhhhccCCCCCCccccchhhHHHHHHHHHHHHHhhccccCcchhh
Confidence                 367789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcChhhhhc
Q psy3253         232 MLNHEFIQRH  241 (251)
Q Consensus       232 vl~hp~~~~~  241 (251)
                      +|.|||.++.
T Consensus       279 ll~hpFi~e~  288 (953)
T KOG0587|consen  279 LLKHPFITEQ  288 (953)
T ss_pred             hccCCccccc
Confidence            9999999843

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=100.00  E-value=1.5e-35  Score=248.67  Aligned_cols=208  Identities=27%  Similarity=0.469  Sum_probs=168.5

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +++ +||||+++++.+..+...|+||||+.+++|.+++. ....+++..+..++.|++.||.|||+.|++|||||     
T Consensus        59 ~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~-----  132 (290)
T cd05613          59 EHIRQSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLS-QRERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIK-----  132 (290)
T ss_pred             HhcccCCChhceeeEeecCCeEEEEEecCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-----
Confidence            355 69999999999999999999999999999999997 34678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-ccccccccccccccccccc--CC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQE--IG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~--~~  157 (251)
                                                  |+||+++.++.++|+|||++........ ......++..|+|||.+.+  ..
T Consensus       133 ----------------------------p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  184 (290)
T cd05613         133 ----------------------------LENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGG  184 (290)
T ss_pred             ----------------------------HHHeEECCCCCEEEeeCccceecccccccccccccCCcccCChhhccCCCCC
Confidence                                        8899998899999999999875433211 1223446788999999865  34


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcc----hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----C
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPM----RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----T  228 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s  228 (251)
                      ++.++|+||+|+++|++++|..||......    .....+.... .  ..+..+++.+.+++.+||+.||++||     +
T Consensus       185 ~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~  261 (290)
T cd05613         185 HDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSE-P--PYPQEMSALAKDIIQRLLMKDPKKRLGCGPSD  261 (290)
T ss_pred             CCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHHhhccC-C--CCCccCCHHHHHHHHHHhcCCHHHhcCCCCCC
Confidence            678899999999999999999999643221    1111121221 1  22455789999999999999999997     8


Q ss_pred             HHHHhcChhhhhccCCCC
Q psy3253         229 ASEMLNHEFIQRHDTDPS  246 (251)
Q Consensus       229 ~~evl~hp~~~~~~~~~~  246 (251)
                      +++++.||||++.+|+..
T Consensus       262 ~~~l~~~~~~~~~~~~~~  279 (290)
T cd05613         262 ADEIKKHPFFQKINWDDL  279 (290)
T ss_pred             HHHHHcCcccccCCHHHH
Confidence            999999999999998653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=7e-36  Score=249.14  Aligned_cols=203  Identities=33%  Similarity=0.550  Sum_probs=163.1

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++|||++++++++......++|+||+. ++|.+++......+++..+..++.|++.||.+||++|++||||+      
T Consensus        53 ~~~~~~~i~~~~~~~~~~~~~~~v~e~~~-~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~------  125 (282)
T cd07829          53 KELKHPNIVKLLDVIHTERKLYLVFEYCD-MDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLK------  125 (282)
T ss_pred             HhcCCCCHHHHHhhhhcCCceEEEecCcC-cCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC------
Confidence            56789999999999999999999999997 59999998554689999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccC-CCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~  160 (251)
                                                 |+||+++.++.++|+|||.+...............+..|+|||.+.+. .++.
T Consensus       126 ---------------------------~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~  178 (282)
T cd07829         126 ---------------------------PQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYST  178 (282)
T ss_pred             ---------------------------hheEEEcCCCCEEEecCCcccccCCCccccCccccCcCcCChHHhcCCcCCCc
Confidence                                       889999999999999999987654332222233456779999998765 7889


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC--------------------CCCCCC------CCCCCCCHHHHHH
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT--------------------KPPPSF------REPDVWTPEFIDF  214 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~--------------------~~~~~~------~~~~~~~~~~~~l  214 (251)
                      ++|+||+|+++|++++|.+||...........+..                    ...+..      ......+..+.++
T Consensus       179 ~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (282)
T cd07829         179 AVDIWSVGCIFAEMITGKPLFPGDSEIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDL  258 (282)
T ss_pred             cccHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcccccHHHHHH
Confidence            99999999999999999999966543222111100                    000000      0112347889999


Q ss_pred             HHHhhhcCcCccCCHHHHhcChhh
Q psy3253         215 VSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       215 i~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +.+||..||++||+++++++||||
T Consensus       259 i~~~l~~~P~~Rp~~~~~l~~p~~  282 (282)
T cd07829         259 LSKMLQYNPAKRISAKEALKHPYF  282 (282)
T ss_pred             HHHhhccCcccCCCHHHHhhCcCC
Confidence            999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=100.00  E-value=2.9e-35  Score=244.30  Aligned_cols=199  Identities=25%  Similarity=0.428  Sum_probs=163.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++||||+.+++|.+++....+.+++.+++.++.|++.||.|||++|++|+|||     
T Consensus        59 l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~-----  133 (269)
T cd05065          59 MGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLA-----  133 (269)
T ss_pred             HHhCCCcCcceEEEEECCCCceEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccC-----
Confidence            357899999999999999999999999999999999998666779999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc---ccccc--ccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK---RNTVI--GTPFWMAPEVIQE  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~--~~~~y~aPE~~~~  155 (251)
                                                  |+||+++.++.++++|||.+.........   .....  .+..|+|||.+.+
T Consensus       134 ----------------------------p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~  185 (269)
T cd05065         134 ----------------------------ARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAY  185 (269)
T ss_pred             ----------------------------hheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhcc
Confidence                                        88999988899999999998654322111   11111  1346999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         156 IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ..++.++||||+||++|++++ |..||...+.......+....  ....+..++..+.+++.+||..+|++||++++++.
T Consensus       186 ~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  263 (269)
T cd05065         186 RKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVINAIEQDY--RLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVS  263 (269)
T ss_pred             CcccchhhhhhhHHHHHHHhcCCCCCCCCCCHHHHHHHHHcCC--cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            889999999999999999886 999997765554444443322  22234567899999999999999999999999985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=100.00  E-value=4.1e-35  Score=242.68  Aligned_cols=200  Identities=33%  Similarity=0.585  Sum_probs=161.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      |++++|+|++++++++..+...+++|||+.+++|.+++...   ...+++..+..++.+++.||.|||+.|++|||||  
T Consensus        56 l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~--  133 (267)
T cd08224          56 LKQLDHPNVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIK--  133 (267)
T ss_pred             HHhCCCCCeeeeeeeeecCCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcC--
Confidence            35789999999999999999999999999999999998632   3568999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                     |+||+++.++.++++|||.+..............++..|.|||.+.+..
T Consensus       134 -------------------------------p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~  182 (267)
T cd08224         134 -------------------------------PANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENG  182 (267)
T ss_pred             -------------------------------hhhEEECCCCcEEEeccceeeeccCCCcccceecCCccccCHHHhccCC
Confidence                                           8899998899999999999865443322233345778899999998888


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCc--chhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++.++|+||+|+++|++++|..||.....  ......+........ ....++..+.++|.+||..+|++|||+.++++
T Consensus       183 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~  260 (267)
T cd08224         183 YNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPPL-PADHYSEELRDLVSRCINPDPEKRPDISYVLQ  260 (267)
T ss_pred             CCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCCCCCC-ChhhcCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence            99999999999999999999999954322  112222222211111 12256889999999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=100.00  E-value=3.2e-35  Score=247.21  Aligned_cols=201  Identities=21%  Similarity=0.360  Sum_probs=160.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC----------CCCCHHHHHHHHHHHHHHHHHHHhCCcc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK----------KTLSEDEIATILCDTLKGLEYLHLRRKI   70 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~----------~~l~~~~~~~~~~~i~~~l~~LH~~~ii   70 (251)
                      |++++||||+++++++..+...+++|||+.+++|.+++....          ..+++..+..++.|++.||.|||+.|++
T Consensus        73 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~  152 (296)
T cd05051          73 LSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFV  152 (296)
T ss_pred             HHhcCCCCEeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            357899999999999999999999999999999999997433          2689999999999999999999999999


Q ss_pred             ccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--ccccccccccccc
Q psy3253          71 HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWM  148 (251)
Q Consensus        71 H~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~  148 (251)
                      |||||                                 |+||+++.++.++|+|||.+.......  .......++..|+
T Consensus       153 H~dlk---------------------------------p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~  199 (296)
T cd05051         153 HRDLA---------------------------------TRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWM  199 (296)
T ss_pred             ccccc---------------------------------hhceeecCCCceEEccccceeecccCcceeecCcCCCCceec
Confidence            99988                                 888888888999999999986543221  1122334566799


Q ss_pred             cccccccCCCCcchhHHHHHHHHHHHHh--CCCCCCCCCcchhhhhcCC-----CCCCCCCCCCCCCHHHHHHHHHhhhc
Q psy3253         149 APEVIQEIGYDCVADMWSLGITALEMAE--GKPPYGDIHPMRAIFMIPT-----KPPPSFREPDVWTPEFIDFVSRCLVK  221 (251)
Q Consensus       149 aPE~~~~~~~~~~~DvwslG~~l~~l~~--g~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~li~~~l~~  221 (251)
                      |||.+.+..++.++|||||||++|++++  +..||..............     ........+..++.++.+++.+||+.
T Consensus       200 aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~  279 (296)
T cd05051         200 AWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQVIENAGHFFRDDGRQIYLPRPPNCPKDIYELMLECWRR  279 (296)
T ss_pred             CHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChHHHHHHHHhccccccccccCCCccCCCHHHHHHHHHHhcc
Confidence            9999988889999999999999999998  7788865544333222211     11112223455688999999999999


Q ss_pred             CcCccCCHHHHhc
Q psy3253         222 NPEERATASEMLN  234 (251)
Q Consensus       222 ~p~~Rps~~evl~  234 (251)
                      ||++|||++|+++
T Consensus       280 ~p~~Rpt~~el~~  292 (296)
T cd05051         280 DEEDRPTFREIHL  292 (296)
T ss_pred             ChhcCCCHHHHHH
Confidence            9999999999963

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=100.00  E-value=8.5e-36  Score=249.99  Aligned_cols=207  Identities=29%  Similarity=0.474  Sum_probs=167.8

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +++ +||||+++++.+..+...|+||||+.+|+|.+++. ....+++..++.++.|++.||.|||+.|++|||||     
T Consensus        59 ~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~-----  132 (288)
T cd05583          59 EAVRRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLY-QREHFTESEVRVYIAEIVLALDHLHQLGIIYRDIK-----  132 (288)
T ss_pred             HhccCCcchhhhheeeecCCEEEEEEecCCCCcHHHHHh-hcCCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----
Confidence            356 69999999999999999999999999999999986 34678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCC--
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIG--  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~--  157 (251)
                                                  |+||+++.++.++++|||++........ ......++..|+|||.+.+..  
T Consensus       133 ----------------------------p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  184 (288)
T cd05583         133 ----------------------------LENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGG  184 (288)
T ss_pred             ----------------------------HHHeEECCCCCEEEEECccccccccccccccccccCCccccCHHHhcCCCCC
Confidence                                        8899998889999999999876443221 122234678899999987654  


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcc----hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC---HH
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPM----RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT---AS  230 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps---~~  230 (251)
                      .+.++|+||+|+++|+|++|..||......    .....+...   ....+..++..+.+++.+||+.||++|||   +.
T Consensus       185 ~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~  261 (288)
T cd05583         185 HDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKS---KPPFPKTMSAEARDFIQKLLEKDPKKRLGANGAD  261 (288)
T ss_pred             CcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHcc---CCCCCcccCHHHHHHHHHHhcCCHhhccCcchHH
Confidence            788999999999999999999999543221    111111122   12234567899999999999999999998   56


Q ss_pred             HHhcChhhhhccCCC
Q psy3253         231 EMLNHEFIQRHDTDP  245 (251)
Q Consensus       231 evl~hp~~~~~~~~~  245 (251)
                      ++++||||+..+|+.
T Consensus       262 ~~l~~~~~~~~~~~~  276 (288)
T cd05583         262 EIKNHPFFQGIDWDD  276 (288)
T ss_pred             HHhcCcccccCCHHH
Confidence            779999999999874

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=100.00  E-value=1.3e-35  Score=254.50  Aligned_cols=210  Identities=26%  Similarity=0.485  Sum_probs=162.0

Q ss_pred             CCCCCCCccceeeeeEeeC-----CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN-----TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~-----~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      |++++||||+++++++...     .+.|+++||+. ++|.+++.  ...+++..+..++.|++.||.|||+.|++|||||
T Consensus        57 l~~l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~--~~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlk  133 (336)
T cd07849          57 LRRFKHENIIGILDIIRPPSFESFNDVYIVQELME-TDLYKLIK--TQHLSNDHIQYFLYQILRGLKYIHSANVLHRDLK  133 (336)
T ss_pred             HHhCCCCCcCchhheeecccccccceEEEEehhcc-cCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC
Confidence            3578999999999987543     35899999996 58888775  4679999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc---ccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEV  152 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~~y~aPE~  152 (251)
                                                       |+||+++.++.++|+|||++.........   .....++..|+|||.
T Consensus       134 ---------------------------------p~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  180 (336)
T cd07849         134 ---------------------------------PSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEI  180 (336)
T ss_pred             ---------------------------------HHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChHH
Confidence                                             88999999999999999998765432111   122356888999998


Q ss_pred             ccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---CCCC--------------------C--CCC---CC
Q psy3253         153 IQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---PTKP--------------------P--PSF---RE  203 (251)
Q Consensus       153 ~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---~~~~--------------------~--~~~---~~  203 (251)
                      +.+ ..++.++|+||+||++|+|++|++||.+.+.......+   ....                    +  ...   ..
T Consensus       181 ~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (336)
T cd07849         181 MLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKL  260 (336)
T ss_pred             hhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHH
Confidence            754 56888999999999999999999999654322211100   0000                    0  000   00


Q ss_pred             CCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCC
Q psy3253         204 PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPS  246 (251)
Q Consensus       204 ~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~  246 (251)
                      ....++++.+++.+||+.+|++|||++|+++||||+....+..
T Consensus       261 ~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~~~~~  303 (336)
T cd07849         261 FPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYHDPSD  303 (336)
T ss_pred             hcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccCCCCC
Confidence            1235788999999999999999999999999999987765543

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=100.00  E-value=3.1e-35  Score=245.84  Aligned_cols=202  Identities=27%  Similarity=0.435  Sum_probs=160.7

Q ss_pred             CCCCCCccceeeeeEeeCCe-----EEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTD-----LWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~-----~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      ++++||||+++++++.....     .+++|||+. ++|.+++.... ..+++..++.++.|++.||.|||+.|++|+||+
T Consensus        56 ~~~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~  134 (287)
T cd07838          56 ESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLK  134 (287)
T ss_pred             hccCCCCcceEEEEEeeccCCCCceeEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCC
Confidence            35679999999999987766     999999996 48999886433 368999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.++|+|||.+....... ......++..|+|||.+.+
T Consensus       135 ---------------------------------~~nili~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~PE~~~~  180 (287)
T cd07838         135 ---------------------------------PQNILVTSDGQVKIADFGLARIYSFEM-ALTSVVVTLWYRAPEVLLQ  180 (287)
T ss_pred             ---------------------------------hhhEEEccCCCEEEeccCcceeccCCc-ccccccccccccChHHhcc
Confidence                                             889999999999999999987654332 2223346778999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-----------------------CCCC-CCCCCCCCHHH
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-----------------------PPPS-FREPDVWTPEF  211 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-----------------------~~~~-~~~~~~~~~~~  211 (251)
                      ..++.++|+||+||++|+|++|.+||.+.........+...                       .... .......++.+
T Consensus       181 ~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (287)
T cd07838         181 SSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEG  260 (287)
T ss_pred             CCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHHH
Confidence            88999999999999999999999999765443322111100                       0000 00012345778


Q ss_pred             HHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         212 IDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       212 ~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .+++.+||+.||++||+++|+++||||
T Consensus       261 ~~li~~~l~~dp~~Rp~~~~il~~~~~  287 (287)
T cd07838         261 LDLLKKMLTFNPHKRISAFEALQHPYF  287 (287)
T ss_pred             HHHHHHHhccCCccCCCHHHHhcCcCC
Confidence            999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=100.00  E-value=3.9e-35  Score=242.29  Aligned_cols=198  Identities=28%  Similarity=0.456  Sum_probs=164.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++......+++|||+++++|.+++.... ..+++..+..++.|++.||.|||++|++|+|||    
T Consensus        55 l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~----  130 (261)
T cd05034          55 MKKLRHDKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLA----  130 (261)
T ss_pred             HhhCCCCCEeeeeeeeecCCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcc----
Confidence            357899999999999998889999999999999999997433 468999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-ccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.++++|||.+......... .....++..|+|||.+.+..+
T Consensus       131 -----------------------------p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  181 (261)
T cd05034         131 -----------------------------ARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRF  181 (261)
T ss_pred             -----------------------------hheEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCHHHhccCCc
Confidence                                         88889988999999999998765432111 111223557999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      +.++|+||+|+++|++++ |+.||.+.+.......+.....  ...+...+.++.+++.+||+.+|++||+++|++
T Consensus       182 ~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~  255 (261)
T cd05034         182 TIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQVERGYR--MPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQ  255 (261)
T ss_pred             CchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC--CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHH
Confidence            999999999999999998 9999977665554444433322  223455689999999999999999999999997

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=100.00  E-value=3.7e-35  Score=246.08  Aligned_cols=199  Identities=25%  Similarity=0.420  Sum_probs=161.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------------CCCCHHHHHHHHHHHHH
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------------KTLSEDEIATILCDTLK   59 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------------~~l~~~~~~~~~~~i~~   59 (251)
                      |++++||||+++++++..+.+.+++|||+.+|+|.+++....                     ..+++..++.++.|++.
T Consensus        62 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~  141 (288)
T cd05050          62 MAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAA  141 (288)
T ss_pred             HHhcCCCchheEEEEEcCCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999996322                     24678889999999999


Q ss_pred             HHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--c
Q psy3253          60 GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--K  137 (251)
Q Consensus        60 ~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~  137 (251)
                      ||.|||++|++|||||                                 |+||+++.++.++|+|||.+........  .
T Consensus       142 aL~~lH~~~i~H~dl~---------------------------------p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~  188 (288)
T cd05050         142 GMAYLSERKFVHRDLA---------------------------------TRNCLVGENMVVKIADFGLSRNIYSADYYKA  188 (288)
T ss_pred             HHHHHHhCCeeccccc---------------------------------HhheEecCCCceEECccccceecccCccccc
Confidence            9999999999999988                                 8888888889999999999865432211  1


Q ss_pred             ccccccccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHH
Q psy3253         138 RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVS  216 (251)
Q Consensus       138 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  216 (251)
                      ......+..|+|||.+.+..++.++|||||||++|+|++ |..||.+.........+......  ..+..++.++.+++.
T Consensus       189 ~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~  266 (288)
T cd05050         189 SENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHEEVIYYVRDGNVL--SCPDNCPLELYNLMR  266 (288)
T ss_pred             cCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCC--CCCCCCCHHHHHHHH
Confidence            112234567999999988889999999999999999997 88888766555544444333221  234567899999999


Q ss_pred             HhhhcCcCccCCHHHHhc
Q psy3253         217 RCLVKNPEERATASEMLN  234 (251)
Q Consensus       217 ~~l~~~p~~Rps~~evl~  234 (251)
                      +||+.+|++|||++|+++
T Consensus       267 ~~l~~~p~~Rpt~~el~~  284 (288)
T cd05050         267 LCWSKLPSDRPSFASINR  284 (288)
T ss_pred             HHcccCcccCCCHHHHHH
Confidence            999999999999999874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=100.00  E-value=4.2e-35  Score=243.51  Aligned_cols=199  Identities=27%  Similarity=0.452  Sum_probs=162.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+ ...++||||+.+++|.+++......+++..+..++.|++.||+|||+.|++|||||     
T Consensus        61 l~~~~h~~i~~~~~~~~~-~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~-----  134 (270)
T cd05056          61 MRQFDHPHIVKLIGVITE-NPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIA-----  134 (270)
T ss_pred             HHhCCCCchhceeEEEcC-CCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccC-----
Confidence            357899999999999865 45789999999999999997555678999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-ccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++++|||++......... .....++..|+|||.+.+..++
T Consensus       135 ----------------------------p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  186 (270)
T cd05056         135 ----------------------------ARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFT  186 (270)
T ss_pred             ----------------------------hheEEEecCCCeEEccCceeeecccccceecCCCCccccccChhhhccCCCC
Confidence                                        88888888889999999998755432111 1112234569999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++||||||+++|++++ |..||...........+......  ..+..++.++.+++.+||..+|++|||+++++..
T Consensus       187 ~~~Di~slG~il~el~~~g~~pf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~  261 (270)
T cd05056         187 SASDVWMFGVCMWEILMLGVKPFQGVKNNDVIGRIENGERL--PMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQ  261 (270)
T ss_pred             chhhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCcC--CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            99999999999999986 99999776655544444333222  2356778999999999999999999999998853

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=100.00  E-value=2.8e-35  Score=257.72  Aligned_cols=198  Identities=25%  Similarity=0.479  Sum_probs=159.2

Q ss_pred             CCCC-CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC--------------------------------------
Q psy3253           2 QQCD-SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK--------------------------------------   42 (251)
Q Consensus         2 ~~l~-hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~--------------------------------------   42 (251)
                      +++. ||||+++++++......|+|||||.+|+|.+++..+.                                      
T Consensus        95 ~~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (400)
T cd05105          95 THLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENK  174 (400)
T ss_pred             HhcCCCCCeeeEEEEEccCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhccc
Confidence            4564 9999999999999999999999999999999986431                                      


Q ss_pred             ---------------------------------------------------------CCCCHHHHHHHHHHHHHHHHHHH
Q psy3253          43 ---------------------------------------------------------KTLSEDEIATILCDTLKGLEYLH   65 (251)
Q Consensus        43 ---------------------------------------------------------~~l~~~~~~~~~~~i~~~l~~LH   65 (251)
                                                                               ..+++..+..++.|++.||.|||
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH  254 (400)
T cd05105         175 GDYMDMKQADTTQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLA  254 (400)
T ss_pred             ccccccccccccccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence                                                                     24677888999999999999999


Q ss_pred             hCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccc
Q psy3253          66 LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIG  143 (251)
Q Consensus        66 ~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~  143 (251)
                      +.|++|||||                                 |+||+++.++.++|+|||++........  ......+
T Consensus       255 ~~~ivH~dik---------------------------------p~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~  301 (400)
T cd05105         255 SKNCVHRDLA---------------------------------ARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFL  301 (400)
T ss_pred             hCCeeCCCCC---------------------------------hHhEEEeCCCEEEEEeCCcceeccccccccccCCcCC
Confidence            9999999988                                 8888888888999999999875432211  1222345


Q ss_pred             ccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhh-hcCCCCCCCCCCCCCCCHHHHHHHHHhhhc
Q psy3253         144 TPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIF-MIPTKPPPSFREPDVWTPEFIDFVSRCLVK  221 (251)
Q Consensus       144 ~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  221 (251)
                      +..|+|||.+.+..++.++|||||||++|++++ |..||.......... .+....  ....+..++.++.+++.+||+.
T Consensus       302 ~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~  379 (400)
T cd05105         302 PVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTFYNKIKSGY--RMAKPDHATQEVYDIMVKCWNS  379 (400)
T ss_pred             CcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhHHHHHHHhcCC--CCCCCccCCHHHHHHHHHHCcc
Confidence            677999999988889999999999999999997 889987654332222 222221  2233566789999999999999


Q ss_pred             CcCccCCHHHHhc
Q psy3253         222 NPEERATASEMLN  234 (251)
Q Consensus       222 ~p~~Rps~~evl~  234 (251)
                      ||++|||+.++.+
T Consensus       380 dP~~RPt~~~l~~  392 (400)
T cd05105         380 EPEKRPSFLHLSD  392 (400)
T ss_pred             CHhHCcCHHHHHH
Confidence            9999999999874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=100.00  E-value=5.4e-35  Score=241.53  Aligned_cols=197  Identities=25%  Similarity=0.418  Sum_probs=161.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++|||++++++++. ....+++|||+.+++|.+++... ...+++..++.++.|++.||.|||+.|++|||||    
T Consensus        55 l~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~----  129 (260)
T cd05070          55 MKKLRHDKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLR----  129 (260)
T ss_pred             HHhcCCCceEEEEeEEC-CCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCc----
Confidence            45789999999999885 45689999999999999998743 3458999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-ccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.++|+|||.+......... .....++..|+|||...+..+
T Consensus       130 -----------------------------p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  180 (260)
T cd05070         130 -----------------------------SANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRF  180 (260)
T ss_pred             -----------------------------cceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccChHHHhcCCC
Confidence                                         88888888889999999999654322111 112234556999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      +.++|+||||+++|++++ |.+||.+.+.......+.....  ...+...+..+.+++.+||..+|++|||++++.
T Consensus       181 ~~~~Di~slG~~l~~l~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~  254 (260)
T cd05070         181 TIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYR--MPCPQDCPISLHELMLQCWKKDPEERPTFEYLQ  254 (260)
T ss_pred             cchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC--CCCCCcCCHHHHHHHHHHcccCcccCcCHHHHH
Confidence            999999999999999999 8999977666555554443322  223556789999999999999999999999997

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>KOG2345|consensus

Probab=100.00  E-value=5.2e-36  Score=235.36  Aligned_cols=200  Identities=26%  Similarity=0.397  Sum_probs=158.0

Q ss_pred             CCCCCCccceeeeeEeeC-----CeEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhCC--ccc
Q psy3253           2 QQCDSPYVVKYYGSYFKN-----TDLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLHLRR--KIH   71 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~-----~~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH~~~--iiH   71 (251)
                      ++++||||+++++....+     ...|++++|...|||.+.++..   +..+++.+++.++.+++.||++||+..  +.|
T Consensus        73 rkf~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH  152 (302)
T KOG2345|consen   73 RKFNSPNVLRLVDHQLREEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAH  152 (302)
T ss_pred             HhhCCcchHHHHHHHHHhhccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccc
Confidence            478999999998877533     3499999999999999999633   346899999999999999999999998  999


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc---------cccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---------MAKRNTVI  142 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~---------~~~~~~~~  142 (251)
                      ||||                                 |.||+++..+.+++.|||.+....-.         -..+....
T Consensus       153 ~DiK---------------------------------P~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~  199 (302)
T KOG2345|consen  153 RDIK---------------------------------PANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEER  199 (302)
T ss_pred             cCCC---------------------------------cceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHh
Confidence            9988                                 88899988999999999999765321         11233456


Q ss_pred             ccccccccccccc---CCCCcchhHHHHHHHHHHHHhCCCCCCCCCc--chhhhhcCCCCCCCCCCCCCCCHHHHHHHHH
Q psy3253         143 GTPFWMAPEVIQE---IGYDCVADMWSLGITALEMAEGKPPYGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSR  217 (251)
Q Consensus       143 ~~~~y~aPE~~~~---~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  217 (251)
                      +|..|+|||.+.-   ...+.++|||||||++|.|+.|..||.....  ......+. +....++....++..+.++|++
T Consensus       200 Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~-n~q~s~P~~~~yse~l~~lik~  278 (302)
T KOG2345|consen  200 CTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQ-NAQISIPNSSRYSEALHQLIKS  278 (302)
T ss_pred             CCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeee-ccccccCCCCCccHHHHHHHHH
Confidence            7899999999953   4578899999999999999999999943221  11111111 1122233334489999999999


Q ss_pred             hhhcCcCccCCHHHHhcC
Q psy3253         218 CLVKNPEERATASEMLNH  235 (251)
Q Consensus       218 ~l~~~p~~Rps~~evl~h  235 (251)
                      ||+.||.+||++.|++.+
T Consensus       279 mlqvdP~qRP~i~~ll~~  296 (302)
T KOG2345|consen  279 MLQVDPNQRPTIPELLSK  296 (302)
T ss_pred             HhcCCcccCCCHHHHHHH
Confidence            999999999999999864

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=100.00  E-value=5.5e-35  Score=240.41  Aligned_cols=198  Identities=28%  Similarity=0.503  Sum_probs=164.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~-l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      ++++||||+++++++.+....+++|||+.+++|.+++...... +++..+..++.|++.||.+||+.|++|+|||     
T Consensus        56 ~~l~~~~i~~~~~~~~~~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~-----  130 (258)
T smart00219       56 RKLDHPNIVKLLGVCTEEEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLA-----  130 (258)
T ss_pred             HhcCCCchheEEEEEcCCCeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccc-----
Confidence            5679999999999999989999999999999999999744444 9999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccc-ccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN-TVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~-~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++++|||.+........... ...++..|+|||.+.+..++
T Consensus       131 ----------------------------~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~  182 (258)
T smart00219      131 ----------------------------ARNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFT  182 (258)
T ss_pred             ----------------------------cceEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHhccCCCC
Confidence                                        8888998899999999999976543311111 12356789999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .++|+||+|+++|++++ |.+||...+.......+......  ..+..++.++.+++.+||+.+|++|||++|+++
T Consensus       183 ~~~Di~slG~i~~~l~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  256 (258)
T smart00219      183 SKSDVWSFGVLLWEIFTLGESPYPGMSNEEVLEYLKKGYRL--PKPENCPPEIYKLMLQCWAEDPEDRPTFSELVE  256 (258)
T ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCC--CCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHh
Confidence            99999999999999998 88998766555544444333322  234557999999999999999999999999985

Phosphotransferases. Tyrosine-specific kinase subfamily.

>KOG4645|consensus

Probab=100.00  E-value=2.7e-37  Score=286.33  Aligned_cols=207  Identities=35%  Similarity=0.642  Sum_probs=175.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      .-++|||+|++||+=.+.+..++.||||++|+|.++++ .+...++...+.+..|++.|+.|||++||||||||      
T Consensus      1289 E~lnHpNlV~YyGVEvHRekv~IFMEyC~~GsLa~ll~-~gri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK------ 1361 (1509)
T KOG4645|consen 1289 EGLNHPNLVRYYGVEVHREKVYIFMEYCEGGSLASLLE-HGRIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIK------ 1361 (1509)
T ss_pred             HhccCccccccCceeecHHHHHHHHHHhccCcHHHHHH-hcchhhhhHHHHHHHHHHHHHHHHHhcCceecCCC------
Confidence            45799999999999999999999999999999999997 56778999999999999999999999999999999      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc----cccccccccccccccccccc--
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM----AKRNTVIGTPFWMAPEVIQE--  155 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~--  155 (251)
                                                 |.||+++.+|.+|++|||.|..+....    ..-....||+.|||||++.+  
T Consensus      1362 ---------------------------~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~ 1414 (1509)
T KOG4645|consen 1362 ---------------------------PANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTK 1414 (1509)
T ss_pred             ---------------------------ccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccc
Confidence                                       889999999999999999998765432    12234579999999999965  


Q ss_pred             -CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         156 -IGYDCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       156 -~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                       .+-..++||||+||++.||+||+.||...+.. ..++.+..+..++.  |..++++-++||..||..||++|-++.|++
T Consensus      1415 ~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~--P~~ls~~g~dFle~Cl~~dP~~Rw~~~qll 1492 (1509)
T KOG4645|consen 1415 GKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAGHKPQI--PERLSSEGRDFLEHCLEQDPKMRWTASQLL 1492 (1509)
T ss_pred             cCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhccCCCCC--chhhhHhHHHHHHHHHhcCchhhhHHHHHH
Confidence             34556899999999999999999999766554 33444444444444  566999999999999999999999999999


Q ss_pred             cChhhhhccCC
Q psy3253         234 NHEFIQRHDTD  244 (251)
Q Consensus       234 ~hp~~~~~~~~  244 (251)
                      +|-|-+....+
T Consensus      1493 e~~f~~~~~d~ 1503 (1509)
T KOG4645|consen 1493 EHAFGKSCTDE 1503 (1509)
T ss_pred             Hhhcccccccc
Confidence            99998755443

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.6e-35  Score=241.30  Aligned_cols=202  Identities=36%  Similarity=0.624  Sum_probs=166.0

Q ss_pred             CCCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++.+.+.  ..+++++||+.+++|.+++. ....+++..++.++.|++.||.|||++|++|+|||   
T Consensus        58 l~~l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~-~~~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~---  133 (264)
T cd06653          58 LKNLRHDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLK-AYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIK---  133 (264)
T ss_pred             HHHcCCCCcceEEEEEEcCCCCEEEEEEEeCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC---
Confidence            3578999999999998754  46899999999999999987 44568999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc---cccccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM---AKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                    |+||+++.++.++|+|||++.......   .......++..|+|||.+.+
T Consensus       134 ------------------------------p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  183 (264)
T cd06653         134 ------------------------------GANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISG  183 (264)
T ss_pred             ------------------------------HHHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhhcC
Confidence                                          888898888999999999997543211   11122346788999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ..++.++|+|||||++|++++|..||...........+.... .....+..+++.+.+++.+||+. |.+||++.+++.|
T Consensus       184 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~i~~~l~~-~~~r~~~~~~~~~  261 (264)
T cd06653         184 EGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQP-TKPMLPDGVSDACRDFLKQIFVE-EKRRPTAEFLLRH  261 (264)
T ss_pred             CCCCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHcCC-CCCCCCcccCHHHHHHHHHHhcC-cccCccHHHHhcC
Confidence            888999999999999999999999997765555444333222 22234677899999999999994 7999999999999


Q ss_pred             hhh
Q psy3253         236 EFI  238 (251)
Q Consensus       236 p~~  238 (251)
                      ||.
T Consensus       262 ~~~  264 (264)
T cd06653         262 PFV  264 (264)
T ss_pred             CCC
Confidence            984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=100.00  E-value=7.6e-35  Score=240.77  Aligned_cols=197  Identities=25%  Similarity=0.413  Sum_probs=160.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++|||++++++++. ....+++|||+.+++|.++++... ..+++..+..++.|++.||.|||+.|++|+|||    
T Consensus        55 l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~----  129 (260)
T cd05069          55 MKKLRHDKLVPLYAVVS-EEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLR----  129 (260)
T ss_pred             HHhCCCCCeeeEEEEEc-CCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccC----
Confidence            35789999999999885 456899999999999999997433 358899999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.++|+|||.+........ ......++..|+|||...+..+
T Consensus       130 -----------------------------~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~  180 (260)
T cd05069         130 -----------------------------AANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRF  180 (260)
T ss_pred             -----------------------------cceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCHHHhccCCc
Confidence                                         8888998899999999999965432211 1112234567999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      +.++|+||+|+++|++++ |..||.+.........+......  ..+...+..+.+++.+||..||++||++++++
T Consensus       181 ~~~~Di~slG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~  254 (260)
T cd05069         181 TIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVERGYRM--PCPQGCPESLHELMKLCWKKDPDERPTFEYIQ  254 (260)
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--CCCcccCHHHHHHHHHHccCCcccCcCHHHHH
Confidence            999999999999999999 99999776655544444333222  23456789999999999999999999999998

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=100.00  E-value=7.9e-35  Score=245.21  Aligned_cols=201  Identities=20%  Similarity=0.366  Sum_probs=159.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC----------CCCCHHHHHHHHHHHHHHHHHHHhCCcc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK----------KTLSEDEIATILCDTLKGLEYLHLRRKI   70 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~----------~~l~~~~~~~~~~~i~~~l~~LH~~~ii   70 (251)
                      |++++||||+++++++..+...+++|||+.+++|.+++....          ..+++..+..++.|++.||.|||+.|++
T Consensus        73 l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~  152 (296)
T cd05095          73 MSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFV  152 (296)
T ss_pred             HHhCCCCCcceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCee
Confidence            357899999999999999999999999999999999997432          2367788999999999999999999999


Q ss_pred             ccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccc
Q psy3253          71 HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWM  148 (251)
Q Consensus        71 H~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~  148 (251)
                      |||||                                 |+||+++.++.++|+|||++........  .......+..|+
T Consensus       153 H~dlk---------------------------------p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~  199 (296)
T cd05095         153 HRDLA---------------------------------TRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWM  199 (296)
T ss_pred             cccCC---------------------------------hheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccC
Confidence            99988                                 8888888889999999999875432211  112223356799


Q ss_pred             cccccccCCCCcchhHHHHHHHHHHHHh--CCCCCCCCCcchhhhhc-----CCCCCCCCCCCCCCCHHHHHHHHHhhhc
Q psy3253         149 APEVIQEIGYDCVADMWSLGITALEMAE--GKPPYGDIHPMRAIFMI-----PTKPPPSFREPDVWTPEFIDFVSRCLVK  221 (251)
Q Consensus       149 aPE~~~~~~~~~~~DvwslG~~l~~l~~--g~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~li~~~l~~  221 (251)
                      |||...+..++.++|+|||||++|++++  |..||............     ..........+..+++.+.+++.+||+.
T Consensus       200 ~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~  279 (296)
T cd05095         200 SWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVIENTGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRR  279 (296)
T ss_pred             CHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHcCC
Confidence            9999888889999999999999999998  77888655443332211     0111112233456789999999999999


Q ss_pred             CcCccCCHHHHhc
Q psy3253         222 NPEERATASEMLN  234 (251)
Q Consensus       222 ~p~~Rps~~evl~  234 (251)
                      ||++|||++|+++
T Consensus       280 ~p~~Rp~~~~i~~  292 (296)
T cd05095         280 NAKERPSFQEIHA  292 (296)
T ss_pred             CcccCCCHHHHHH
Confidence            9999999999974

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=6.4e-35  Score=245.64  Aligned_cols=201  Identities=20%  Similarity=0.369  Sum_probs=159.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-----------CCCCHHHHHHHHHHHHHHHHHHHhCCc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-----------KTLSEDEIATILCDTLKGLEYLHLRRK   69 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-----------~~l~~~~~~~~~~~i~~~l~~LH~~~i   69 (251)
                      |++++||||+++++++......++||||+.+++|.+++....           ..+++..++.++.|++.||.|||++|+
T Consensus        71 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i  150 (295)
T cd05097          71 MSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNF  150 (295)
T ss_pred             HHhCCCCCcCeEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCe
Confidence            457899999999999999999999999999999999986332           236788999999999999999999999


Q ss_pred             cccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccc
Q psy3253          70 IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFW  147 (251)
Q Consensus        70 iH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y  147 (251)
                      +|||||                                 |+||+++.++.++|+|||++........  ......++..|
T Consensus       151 ~H~dlk---------------------------------p~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y  197 (295)
T cd05097         151 VHRDLA---------------------------------TRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRW  197 (295)
T ss_pred             eccccC---------------------------------hhhEEEcCCCcEEecccccccccccCcceeccCcCcCceee
Confidence            999988                                 8888888888999999999865432211  11222345679


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHh--CCCCCCCCCcchhhhhcCC-----CCCCCCCCCCCCCHHHHHHHHHhhh
Q psy3253         148 MAPEVIQEIGYDCVADMWSLGITALEMAE--GKPPYGDIHPMRAIFMIPT-----KPPPSFREPDVWTPEFIDFVSRCLV  220 (251)
Q Consensus       148 ~aPE~~~~~~~~~~~DvwslG~~l~~l~~--g~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~li~~~l~  220 (251)
                      +|||.+.+..++.++|+|||||++|+|++  +..||..............     ........+..+++.+.+++.+||+
T Consensus       198 ~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  277 (295)
T cd05097         198 MAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDEQVIENTGEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWS  277 (295)
T ss_pred             cChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChHHHHHHHHHhhhhccccccCCCCCCCCHHHHHHHHHHcC
Confidence            99999988889999999999999999988  6678866554443322110     1111122345578999999999999


Q ss_pred             cCcCccCCHHHHhc
Q psy3253         221 KNPEERATASEMLN  234 (251)
Q Consensus       221 ~~p~~Rps~~evl~  234 (251)
                      .||++|||++++++
T Consensus       278 ~~p~~RPs~~~i~~  291 (295)
T cd05097         278 RDIKDRPTFNKIHH  291 (295)
T ss_pred             CCchhCcCHHHHHH
Confidence            99999999999973

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=100.00  E-value=9e-35  Score=241.53  Aligned_cols=199  Identities=19%  Similarity=0.384  Sum_probs=154.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      +.++||||+++++.+.+....|+||||+.+|+|.++++...   ..+++..++.++.||+.||.|||+++++|||||   
T Consensus        50 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dik---  126 (268)
T cd05086          50 RILQHPNILQCLGQCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLA---  126 (268)
T ss_pred             hccCCcchhheEEEecCCCccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCc---
Confidence            46899999999999999999999999999999999997432   346777888999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--cccccccccccccccccccc-
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPEVIQE-  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~-  155 (251)
                                                    |+||+++.++.++|+|||++.......  .......++..|+|||++.. 
T Consensus       127 ------------------------------p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  176 (268)
T cd05086         127 ------------------------------LRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEF  176 (268)
T ss_pred             ------------------------------cceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccc
Confidence                                          888888888999999999985422111  11223456778999998743 


Q ss_pred             ------CCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCC---CCCCCCCCCHHHHHHHHHhhhcCcCc
Q psy3253         156 ------IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPP---SFREPDVWTPEFIDFVSRCLVKNPEE  225 (251)
Q Consensus       156 ------~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~~p~~  225 (251)
                            ..++.++|+||||+++|+|++ |..||...........+......   ....+..+++.+.+++..|| .+|++
T Consensus       177 ~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~c~-~~P~~  255 (268)
T cd05086         177 HGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDREVLNHVIKDQQVKLFKPQLELPYSERWYEVLQFCW-LSPEK  255 (268)
T ss_pred             cCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhhcccccCCCccCCCCcHHHHHHHHHHh-hCccc
Confidence                  245778999999999999997 57788665554433332222111   11223457889999999999 67999


Q ss_pred             cCCHHHHhc
Q psy3253         226 RATASEMLN  234 (251)
Q Consensus       226 Rps~~evl~  234 (251)
                      ||+++|+++
T Consensus       256 Rp~~~~i~~  264 (268)
T cd05086         256 RATAEEVHR  264 (268)
T ss_pred             CCCHHHHHH
Confidence            999999974

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=100.00  E-value=9.4e-35  Score=243.06  Aligned_cols=199  Identities=24%  Similarity=0.367  Sum_probs=156.1

Q ss_pred             CCCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++...  ...+++|||+.+++|.+++..  ..+++.++..++.|++.||.|||++|++|||||   
T Consensus        60 l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlk---  134 (283)
T cd05080          60 LKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPK--HKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLA---  134 (283)
T ss_pred             HHhCCCCCEeeEEEEEecCCCceEEEEecCCCCCCHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHHHCCeeccccC---
Confidence            4578999999999988653  468999999999999999863  469999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc---cccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~  155 (251)
                                                    |+||+++.++.++|+|||++.........   .....++..|+|||.+.+
T Consensus       135 ------------------------------p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~  184 (283)
T cd05080         135 ------------------------------ARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKE  184 (283)
T ss_pred             ------------------------------hheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcc
Confidence                                          88888888899999999998765432111   111234556999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh--hhhcC-----------CCCCCCCCCCCCCCHHHHHHHHHhhhcC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA--IFMIP-----------TKPPPSFREPDVWTPEFIDFVSRCLVKN  222 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~~li~~~l~~~  222 (251)
                      ..++.++|+||||+++|+|++|..||........  .....           .........+..++.++.+++.+||+.+
T Consensus       185 ~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~  264 (283)
T cd05080         185 NKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCPQEVYILMKNCWETE  264 (283)
T ss_pred             cCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCCCCCCCHHHHHHHHHHhccC
Confidence            8899999999999999999999999854321100  00000           0001112234567899999999999999


Q ss_pred             cCccCCHHHHhc
Q psy3253         223 PEERATASEMLN  234 (251)
Q Consensus       223 p~~Rps~~evl~  234 (251)
                      |++|||++++++
T Consensus       265 p~~Rps~~~i~~  276 (283)
T cd05080         265 AKFRPTFRSLIP  276 (283)
T ss_pred             hhhCCCHHHHHH
Confidence            999999999984

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=100.00  E-value=6.9e-35  Score=240.91  Aligned_cols=198  Identities=27%  Similarity=0.476  Sum_probs=161.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++ .....+++|||+.+++|.+++... +..+++.++..++.|++.||+|||+.|++|||||    
T Consensus        55 l~~l~h~~i~~~~~~~-~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~----  129 (260)
T cd05067          55 MKQLQHPRLVRLYAVV-TQEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLR----  129 (260)
T ss_pred             HHhcCCcCeeeEEEEE-ccCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeeccccc----
Confidence            4578999999999987 455789999999999999998643 3568999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.++++|||.+........ ......++..|+|||.+....+
T Consensus       130 -----------------------------p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~  180 (260)
T cd05067         130 -----------------------------AANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTF  180 (260)
T ss_pred             -----------------------------HHhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccCHHHhccCCc
Confidence                                         8888998899999999999865542211 1122234567999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|+||||+++|++++ |.+||.+.+.......+.....  ...+...+.++.+++.+||..+|++|||++++++
T Consensus       181 ~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05067         181 TIKSDVWSFGILLTEIVTYGRIPYPGMTNPEVIQNLERGYR--MPRPDNCPEELYELMRLCWKEKPEERPTFEYLRS  255 (260)
T ss_pred             CcccchHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHcCCC--CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence            999999999999999998 9999977665554444333322  2234567899999999999999999999999974

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=100.00  E-value=5.7e-35  Score=250.70  Aligned_cols=199  Identities=29%  Similarity=0.530  Sum_probs=158.7

Q ss_pred             CCC-CCCccceeeeeEee-CCeEEEEEEccCCCCHHHHHHHhC-------------------------------------
Q psy3253           2 QQC-DSPYVVKYYGSYFK-NTDLWIVMEYCGAGSVSDIMRLRK-------------------------------------   42 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~-~~~~~lv~e~~~~gsL~~~~~~~~-------------------------------------   42 (251)
                      +++ +||||+++++++.. +..++++|||+.+++|.+++....                                     
T Consensus        65 ~~l~~h~niv~~~~~~~~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (337)
T cd05054          65 IHIGHHLNVVNLLGACTKPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSAS  144 (337)
T ss_pred             HhhccCcchhheeeeEecCCCCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccc
Confidence            355 79999999998864 457899999999999999986321                                     


Q ss_pred             -----------------------CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchh
Q psy3253          43 -----------------------KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQ   99 (251)
Q Consensus        43 -----------------------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~   99 (251)
                                             ..+++..+..++.||+.||.|||++||+|||||                        
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDik------------------------  200 (337)
T cd05054         145 SGFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLA------------------------  200 (337)
T ss_pred             cccccCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC------------------------
Confidence                                   257889999999999999999999999999988                        


Q ss_pred             hhhhhhhcccCceecCCCCCeEecccccccccCccc--ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHh-
Q psy3253         100 IYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-  176 (251)
Q Consensus       100 ~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-  176 (251)
                               |+||+++.++.++|+|||++.......  .......++..|+|||.+.+..++.++||||+||++|++++ 
T Consensus       201 ---------p~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~  271 (337)
T cd05054         201 ---------ARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSL  271 (337)
T ss_pred             ---------cceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHc
Confidence                     888888888899999999997653221  11222344567999999999999999999999999999997 


Q ss_pred             CCCCCCCCCcchhh-hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         177 GKPPYGDIHPMRAI-FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       177 g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      |..||.+....... ..+....  ....+...++++.+++.+||+.+|++||+++|+++|
T Consensus       272 g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~cl~~~p~~RPs~~ell~~  329 (337)
T cd05054         272 GASPYPGVQIDEEFCRRLKEGT--RMRAPEYATPEIYSIMLDCWHNNPEDRPTFSELVEI  329 (337)
T ss_pred             CCCCCCCCCccHHHHHHHhccC--CCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            99999664332222 2222221  222345678999999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=100.00  E-value=5.2e-35  Score=250.74  Aligned_cols=208  Identities=31%  Similarity=0.519  Sum_probs=162.5

Q ss_pred             CCC-CCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           2 QQC-DSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      +++ +||||+++++++...  ...|+||||+. ++|.+++..  ..+++..++.++.|++.||.|||+.|++|||||   
T Consensus        61 ~~l~~h~ni~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~---  134 (337)
T cd07852          61 QELGDHPNIVKLLNVIKAENDKDIYLVFEYME-TDLHAVIRA--NILEDVHKRYIMYQLLKALKYIHSGNVIHRDLK---  134 (337)
T ss_pred             HHhcCCCCccceeeeeccCCCceEEEEecccc-cCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC---
Confidence            467 999999999998643  46899999996 599998863  378899999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-----ccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-----KRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~  153 (251)
                                                    |+||+++.++.++|+|||.+........     ......++..|+|||.+
T Consensus       135 ------------------------------p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  184 (337)
T cd07852         135 ------------------------------PSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEIL  184 (337)
T ss_pred             ------------------------------HHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCceee
Confidence                                          8899999999999999999975543211     11223467889999987


Q ss_pred             cc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---------------------------CCCC-CCCCCCC
Q psy3253         154 QE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---------------------------PTKP-PPSFREP  204 (251)
Q Consensus       154 ~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---------------------------~~~~-~~~~~~~  204 (251)
                      .+ ..++.++|+||+|+++|++++|++||.+.........+                           .... .......
T Consensus       185 ~~~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (337)
T cd07852         185 LGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELL  264 (337)
T ss_pred             eccccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhhc
Confidence            54 55788999999999999999999999654433221110                           0000 0001112


Q ss_pred             CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         205 DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       205 ~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      ..++.++.+++.+||+.||++|||++++++|||++......
T Consensus       265 ~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~~~~  305 (337)
T cd07852         265 PKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFHNPS  305 (337)
T ss_pred             cCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhhccCC
Confidence            33688999999999999999999999999999998875543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>KOG0193|consensus

Probab=100.00  E-value=5.2e-36  Score=260.15  Aligned_cols=200  Identities=24%  Similarity=0.444  Sum_probs=168.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++-+|.||+-+.|++.++.. .+|+.+|+|.+|+.+++..+..|+....+.|+.||+.|+.|||.++|||||+|     
T Consensus       442 lkkTRH~NIlLFMG~~~~p~~-AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLK-----  515 (678)
T KOG0193|consen  442 LKKTRHENILLFMGACMNPPL-AIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLK-----  515 (678)
T ss_pred             HhhcchhhheeeehhhcCCce-eeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhcc-----
Confidence            467789999999999988876 99999999999999999888999999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--ccccccccccccccccc---c
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIGTPFWMAPEVIQ---E  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~---~  155 (251)
                                                  ..||++.+++++||+|||++...+.....  .....+...|+|||++.   .
T Consensus       516 ----------------------------SnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~  567 (678)
T KOG0193|consen  516 ----------------------------SNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDD  567 (678)
T ss_pred             ----------------------------ccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhccc
Confidence                                        88999999999999999999643322111  12233567799999994   4


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC--CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP--PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      .+|++.+|||||||++|||++|..||........++++..+.  +........++.++++|+..||.+++++||.+.++|
T Consensus       568 nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il  647 (678)
T KOG0193|consen  568 NPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLL  647 (678)
T ss_pred             CCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEecccccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHH
Confidence            779999999999999999999999999666666666665552  222223456788999999999999999999999998


Q ss_pred             c
Q psy3253         234 N  234 (251)
Q Consensus       234 ~  234 (251)
                      .
T Consensus       648 ~  648 (678)
T KOG0193|consen  648 S  648 (678)
T ss_pred             H
Confidence            6

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=100.00  E-value=3.6e-35  Score=247.56  Aligned_cols=203  Identities=28%  Similarity=0.444  Sum_probs=158.8

Q ss_pred             CCCCCCccceeeeeEeeCC----------eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccc
Q psy3253           2 QQCDSPYVVKYYGSYFKNT----------DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIH   71 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~----------~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH   71 (251)
                      ++++||||+++++++....          .+++|+||+++ +|.+++......+++..+..++.|++.||.|||+.|++|
T Consensus        61 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H  139 (302)
T cd07864          61 RQLNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLH  139 (302)
T ss_pred             HhCCCCCeeeeeheecCcchhhhccccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeec
Confidence            5689999999999987654          79999999975 787777645567999999999999999999999999999


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-ccccccccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAP  150 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aP  150 (251)
                      +|||                                 |+||+++.++.++|+|||.+......... .....++..|+||
T Consensus       140 ~dl~---------------------------------p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~P  186 (302)
T cd07864         140 RDIK---------------------------------CSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPP  186 (302)
T ss_pred             CCCC---------------------------------HHHEEECCCCcEEeCcccccccccCCcccccccceeccCccCh
Confidence            9988                                 88999999999999999998755432211 1222456779999


Q ss_pred             ccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CCCCC------------------------CCC
Q psy3253         151 EVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TKPPP------------------------SFR  202 (251)
Q Consensus       151 E~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~~~~------------------------~~~  202 (251)
                      |.+.+ ..++.++|+||+||++|++++|++||...+.......+.   ....+                        ...
T Consensus       187 E~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (302)
T cd07864         187 ELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLRE  266 (302)
T ss_pred             HHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhcccccccccccccccccccccchhh
Confidence            98854 457889999999999999999999996543322211110   00000                        001


Q ss_pred             CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         203 EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       203 ~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      ....++..+.+++.+||+.+|++|||+++++.||||
T Consensus       267 ~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  302 (302)
T cd07864         267 EFSFIPTPALDLLDHMLTLDPSKRCTAEEALNSPWL  302 (302)
T ss_pred             hcCCCCHHHHHHHHHHccCChhhCCCHHHHhcCCCC
Confidence            123468999999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1.6e-35  Score=254.66  Aligned_cols=205  Identities=26%  Similarity=0.475  Sum_probs=163.1

Q ss_pred             CCCCCCCccceeeeeEeeCCe------EEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTD------LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~------~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |++++|||++++.+++.....      .++|+||+ +++|.+++.  ...+++..+..++.|++.||.|||+.|++||||
T Consensus        68 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~--~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dl  144 (343)
T cd07851          68 LKHMDHENVIGLLDVFTPASSLEDFQDVYLVTHLM-GADLNNIVK--CQKLSDDHIQFLVYQILRGLKYIHSAGIIHRDL  144 (343)
T ss_pred             HHhccCCCHHHHHHHhhccccccccccEEEEEecC-CCCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            357899999999998865544      89999999 679999886  357999999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                      |                                 |+||+++.++.++|+|||.+......   .....++..|+|||.+.
T Consensus       145 k---------------------------------p~Nill~~~~~~kL~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~  188 (343)
T cd07851         145 K---------------------------------PSNIAVNEDCELKILDFGLARHTDDE---MTGYVATRWYRAPEIML  188 (343)
T ss_pred             C---------------------------------HHHeEECCCCCEEEcccccccccccc---ccCCcccccccCHHHHh
Confidence            8                                 88899988999999999999765432   22335677899999985


Q ss_pred             c-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC---------------------------CCC-CCCC
Q psy3253         155 E-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP---------------------------PSF-REPD  205 (251)
Q Consensus       155 ~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~---------------------------~~~-~~~~  205 (251)
                      + ..++.++|+||+|+++|++++|..||.+.+.......+.....                           ..+ ....
T Consensus       189 ~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T cd07851         189 NWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHIDQLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFS  268 (343)
T ss_pred             CCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhc
Confidence            5 4678899999999999999999999976544332222111000                           000 0012


Q ss_pred             CCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         206 VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       206 ~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      ..+.++.+++.+||+.+|++|||++|+++||||++....
T Consensus       269 ~~s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~~~~~  307 (343)
T cd07851         269 GANPLAIDLLEKMLVLDPDKRITAAEALAHPYLAEYHDP  307 (343)
T ss_pred             cCCHHHHHHHHHhCCCChhhCCCHHHHhcCCCccccCCC
Confidence            358899999999999999999999999999999876544

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=100.00  E-value=1.1e-34  Score=240.14  Aligned_cols=197  Identities=25%  Similarity=0.410  Sum_probs=159.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +.++||||+++++.+. ....++||||+.+|+|.+++... ...+++..+..++.|++.||.|||+.|++|||||     
T Consensus        56 ~~l~~~~i~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~-----  129 (262)
T cd05071          56 KKLRHEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR-----  129 (262)
T ss_pred             HhCCCCCcceEEEEEC-CCCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccC-----
Confidence            5689999999999875 45689999999999999999743 3458899999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-ccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++|+|||.+......... .....++..|+|||...+..++
T Consensus       130 ----------------------------p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~  181 (262)
T cd05071         130 ----------------------------AANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT  181 (262)
T ss_pred             ----------------------------cccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCHhHhccCCCC
Confidence                                        88888888899999999998654332111 1122345679999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .++|+||+||++|++++ |..||.+.........+.....  ......++..+.+++.+||+.+|++||+++++++
T Consensus       182 ~~~DvwslG~~l~ellt~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~  255 (262)
T cd05071         182 IKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR--MPCPPECPESLHDLMCQCWRKEPEERPTFEYLQA  255 (262)
T ss_pred             chhhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHHhcCCC--CCCccccCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence            99999999999999999 8889977655554444333322  2224567899999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=100.00  E-value=1.2e-34  Score=242.01  Aligned_cols=198  Identities=27%  Similarity=0.451  Sum_probs=163.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.. ...+++|||+.+|+|.+++......+++..+..++.|++.||.|||+.|++|||||     
T Consensus        63 l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~-----  136 (279)
T cd05057          63 MASVDHPHVVRLLGICLS-SQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLA-----  136 (279)
T ss_pred             HHhCCCCCcceEEEEEec-CceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEecccC-----
Confidence            357899999999999987 68999999999999999998666779999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--ccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.++|+|||.+.........  .....++..|+|||.+....+
T Consensus       137 ----------------------------p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  188 (279)
T cd05057         137 ----------------------------ARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIY  188 (279)
T ss_pred             ----------------------------cceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCc
Confidence                                        88888888889999999999765422111  111223457999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|+||+|+++|++++ |..||.+.........+....  ....+..++..+.+++.+||..+|++||++.++++
T Consensus       189 ~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~  263 (279)
T cd05057         189 THKSDVWSYGVTVWELMTFGAKPYEGIPAVEIPDLLEKGE--RLPQPPICTIDVYMVLVKCWMIDAESRPTFKELIN  263 (279)
T ss_pred             CchhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhCCC--CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            999999999999999998 999997766555444444332  22335567889999999999999999999999873

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=100.00  E-value=7.9e-35  Score=270.83  Aligned_cols=201  Identities=21%  Similarity=0.316  Sum_probs=159.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh----------CCCCCHHHHHHHHHHHHHHHHHHHhCCccc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR----------KKTLSEDEIATILCDTLKGLEYLHLRRKIH   71 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~----------~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH   71 (251)
                      ++++||||+++++++.+++..|++|||++||+|.+++...          ...++...++.++.||+.||.|||++|++|
T Consensus        57 s~L~HPNIVkl~~v~~d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIH  136 (932)
T PRK13184         57 ADLIHPGIVPVYSICSDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLH  136 (932)
T ss_pred             HhCCCcCcCeEEEEEeeCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccc
Confidence            5789999999999999999999999999999999998632          123556778899999999999999999999


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc-----------------
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT-----------------  134 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~-----------------  134 (251)
                      ||||                                 |+||+++.++.++|+|||+++.....                 
T Consensus       137 RDLK---------------------------------PeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s  183 (932)
T PRK13184        137 RDLK---------------------------------PDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYS  183 (932)
T ss_pred             cCCc---------------------------------hheEEEcCCCCEEEEecCcceeccccccccccccccccccccc
Confidence            9988                                 88899988999999999999755211                 


Q ss_pred             -cccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHH
Q psy3253         135 -MAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFID  213 (251)
Q Consensus       135 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (251)
                       ........||+.|+|||.+.+..++.++||||+||++|+|++|..||...+............+........+++.+.+
T Consensus       184 ~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki~~~~~i~~P~~~~p~~~iP~~L~~  263 (932)
T PRK13184        184 SMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKISYRDVILSPIEVAPYREIPPFLSQ  263 (932)
T ss_pred             ccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhhhhhhhccChhhccccccCCHHHHH
Confidence             0111224589999999999998999999999999999999999999976544333222111122222223567899999


Q ss_pred             HHHHhhhcCcCccCCHHHHhcC
Q psy3253         214 FVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       214 li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++.+||..||++|++..+.+.+
T Consensus       264 LI~rcL~~DP~kR~ss~eeLl~  285 (932)
T PRK13184        264 IAMKALAVDPAERYSSVQELKQ  285 (932)
T ss_pred             HHHHHccCChhhCcCHHHHHHH
Confidence            9999999999999876665544

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=100.00  E-value=8.5e-35  Score=249.20  Aligned_cols=199  Identities=24%  Similarity=0.461  Sum_probs=163.4

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHH
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLH   65 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH   65 (251)
                      +++ +||||+++++++..+...+++|||+.+|+|.+++....               ..++..+++.++.|++.||.|||
T Consensus        72 ~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH  151 (334)
T cd05100          72 KMIGKHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLA  151 (334)
T ss_pred             HhhcCCCCeeeeeEEEccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHH
Confidence            456 79999999999999889999999999999999997432               24778889999999999999999


Q ss_pred             hCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--cccccc
Q psy3253          66 LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIG  143 (251)
Q Consensus        66 ~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~  143 (251)
                      ++|++|||||                                 |+||+++.++.++|+|||+++........  .....+
T Consensus       152 ~~givH~dlk---------------------------------p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~  198 (334)
T cd05100         152 SQKCIHRDLA---------------------------------ARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRL  198 (334)
T ss_pred             HCCeeccccc---------------------------------cceEEEcCCCcEEECCcccceecccccccccccCCCc
Confidence            9999999988                                 88888888899999999998755432111  111223


Q ss_pred             ccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcC
Q psy3253         144 TPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN  222 (251)
Q Consensus       144 ~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  222 (251)
                      +..|+|||.+.+..++.++||||||+++|+|++ |..||.+.+.......+.....  ...+..++.++.+++.+||+.+
T Consensus       199 ~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~cl~~~  276 (334)
T cd05100         199 PVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHR--MDKPANCTHELYMIMRECWHAV  276 (334)
T ss_pred             CceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC--CCCCCCCCHHHHHHHHHHcccC
Confidence            456999999988889999999999999999998 8899987766555544433322  2234567899999999999999


Q ss_pred             cCccCCHHHHhcC
Q psy3253         223 PEERATASEMLNH  235 (251)
Q Consensus       223 p~~Rps~~evl~h  235 (251)
                      |++|||++|++++
T Consensus       277 p~~Rps~~ell~~  289 (334)
T cd05100         277 PSQRPTFKQLVED  289 (334)
T ss_pred             hhhCcCHHHHHHH
Confidence            9999999999876

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=100.00  E-value=1e-34  Score=242.38  Aligned_cols=199  Identities=21%  Similarity=0.391  Sum_probs=162.3

Q ss_pred             CCCCCCCccceeeeeEee-CCeEEEEEEccCCCCHHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy3253           1 MQQCDSPYVVKYYGSYFK-NTDLWIVMEYCGAGSVSDIMRLRK-------KTLSEDEIATILCDTLKGLEYLHLRRKIHR   72 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~-~~~~~lv~e~~~~gsL~~~~~~~~-------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~   72 (251)
                      |++++||||+++++++.. +...++++||+.+++|.+++....       ..+++.++..++.|++.||.|||+.+++||
T Consensus        62 l~~l~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~  141 (280)
T cd05043          62 LYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHK  141 (280)
T ss_pred             HHhCCCCCCCeEEEEEecCCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeec
Confidence            357899999999998765 467899999999999999986432       458999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--ccccccccccccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIGTPFWMAP  150 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aP  150 (251)
                      |||                                 |+||+++.++.++++|||+++........  .....++..|+||
T Consensus       142 di~---------------------------------p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~ap  188 (280)
T cd05043         142 DIA---------------------------------ARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMAL  188 (280)
T ss_pred             ccC---------------------------------HhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCH
Confidence            988                                 88888888899999999999755322111  1122345679999


Q ss_pred             cccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         151 EVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       151 E~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                      |.+.+..++.++||||+||++|++++ |..||...+.......+.....  ...+..+++++.+++.+||..||++|||+
T Consensus       189 E~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rps~  266 (280)
T cd05043         189 ESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPFEMAAYLKDGYR--LAQPINCPDELFAVMACCWALDPEERPSF  266 (280)
T ss_pred             HHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHHHHHHHHHcCCC--CCCCCcCCHHHHHHHHHHcCCChhhCCCH
Confidence            99988889999999999999999998 9999977666555444433322  22345578999999999999999999999


Q ss_pred             HHHhc
Q psy3253         230 SEMLN  234 (251)
Q Consensus       230 ~evl~  234 (251)
                      .|+++
T Consensus       267 ~~~~~  271 (280)
T cd05043         267 SQLVQ  271 (280)
T ss_pred             HHHHH
Confidence            99984

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=100.00  E-value=1.1e-34  Score=241.45  Aligned_cols=201  Identities=21%  Similarity=0.416  Sum_probs=163.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC--------CCCCHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK--------KTLSEDEIATILCDTLKGLEYLHLRRKIHR   72 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~--------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~   72 (251)
                      |++++||||+++++++.+....|+||||+.+|+|.+++....        ..+++..+..++.|++.||+|||+.|++||
T Consensus        62 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~  141 (275)
T cd05046          62 FRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHR  141 (275)
T ss_pred             HHhcCCcceeeeEEEECCCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccC
Confidence            357899999999999998889999999999999999997433        168999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc-ccccccccccccccccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT-MAKRNTVIGTPFWMAPE  151 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~~y~aPE  151 (251)
                      |||                                 |+||+++.++.++++|||.+...... ........++..|+|||
T Consensus       142 dlk---------------------------------p~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE  188 (275)
T cd05046         142 DLA---------------------------------ARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPE  188 (275)
T ss_pred             cCc---------------------------------cceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChh
Confidence            988                                 88888888899999999998643221 11122234566799999


Q ss_pred             ccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         152 VIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       152 ~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      .+.+..++.++|+||+|+++|++++ |..||................ ..+..+..++..+.+++.+||+.+|++|||++
T Consensus       189 ~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~  267 (275)
T cd05046         189 AVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDEEVLNRLQAGK-LELPVPEGCPSRLYKLMTRCWAVNPKDRPSFS  267 (275)
T ss_pred             hhccCCCCchhhHHHHHHHHHHHHhCCCCCccccchHHHHHHHHcCC-cCCCCCCCCCHHHHHHHHHHcCCCcccCCCHH
Confidence            9988888999999999999999998 888997655544443333222 22333556889999999999999999999999


Q ss_pred             HHhcC
Q psy3253         231 EMLNH  235 (251)
Q Consensus       231 evl~h  235 (251)
                      |+++.
T Consensus       268 ~~l~~  272 (275)
T cd05046         268 ELVSA  272 (275)
T ss_pred             HHHHH
Confidence            99863

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG0666|consensus

Probab=100.00  E-value=1.2e-35  Score=240.19  Aligned_cols=211  Identities=25%  Similarity=0.527  Sum_probs=164.5

Q ss_pred             CCCCCCCccceeeeeEee-CCeEEEEEEccCCCCHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK-NTDLWIVMEYCGAGSVSDIMRLRK----KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~-~~~~~lv~e~~~~gsL~~~~~~~~----~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      ++++.||||+.+..+|.+ +..++|++||.+. +|.+.++..+    ..++...++.++.||+.|+.|||++=++|||+|
T Consensus        81 ~REl~h~nvi~Lv~Vfl~~d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLK  159 (438)
T KOG0666|consen   81 LRELKHPNVISLVKVFLSHDKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLK  159 (438)
T ss_pred             HHHhcCCcchhHHHHHhccCceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCC
Confidence            357899999999999987 7789999999987 9999996322    458889999999999999999999999999999


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCC----CCeEecccccccccCcccc---cccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE----GHAKLADFGVAGQLTDTMA---KRNTVIGTPFWM  148 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~----~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~  148 (251)
                                                       |.||++..+    |.+||+|||+++.+.+.-.   .....+-|.+|+
T Consensus       160 ---------------------------------PaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYR  206 (438)
T KOG0666|consen  160 ---------------------------------PANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYR  206 (438)
T ss_pred             ---------------------------------cceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEec
Confidence                                             555555544    8899999999998765422   223345688999


Q ss_pred             ccccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCC------------CcchhhhhcCCCCCCC-CCC-----------
Q psy3253         149 APEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDI------------HPMRAIFMIPTKPPPS-FRE-----------  203 (251)
Q Consensus       149 aPE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~------------~~~~~~~~~~~~~~~~-~~~-----------  203 (251)
                      |||.+.+ ..|+++.||||+||++.||++-++.|.+.            ++...+..+...+... ++.           
T Consensus       207 APELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~l  286 (438)
T KOG0666|consen  207 APELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLL  286 (438)
T ss_pred             ChHHhcccccccchhhhHHHHHHHHHHHccCccccchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHH
Confidence            9999977 56899999999999999999999988542            2222333333322111 000           


Q ss_pred             -------------------CCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         204 -------------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       204 -------------------~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                                         ...-++...+|+.+||++||.+|+|++++|+|+||+..+..+
T Consensus       287 s~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~klL~yDP~kRIta~qAleh~yF~~d~lpp  347 (438)
T KOG0666|consen  287 SDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKLLTYDPIKRITAEQALEHPYFTEDPLPP  347 (438)
T ss_pred             HHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHHhccCchhhccHHHHhcccccccCCCCC
Confidence                               011245589999999999999999999999999999876654

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=100.00  E-value=5.9e-35  Score=243.97  Aligned_cols=203  Identities=28%  Similarity=0.483  Sum_probs=161.3

Q ss_pred             CCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      ++++|||++++++++...  ...++|+||+.+ +|.+++......+++..++.++.|++.||.|||++|++|+|||    
T Consensus        53 ~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~----  127 (287)
T cd07840          53 QKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIK----  127 (287)
T ss_pred             HhccCCCeeeheeeEecCCCCcEEEEeccccc-cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCc----
Confidence            567899999999999887  789999999964 9999887554689999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-ccccccccccccccccccc-CC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQE-IG  157 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~-~~  157 (251)
                                                   |+||+++.++.++|+|||.+........ ......++..|+|||.+.+ ..
T Consensus       128 -----------------------------p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  178 (287)
T cd07840         128 -----------------------------GSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATR  178 (287)
T ss_pred             -----------------------------HHHeEEcCCCCEEEccccceeeccCCCcccccccccccccCCceeeEcccc
Confidence                                         8899999999999999999976543321 1222345778999998754 45


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CC-CCCC-----------------------CCCCC-CCH
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KP-PPSF-----------------------REPDV-WTP  209 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~-~~~~-----------------------~~~~~-~~~  209 (251)
                      ++.++||||||+++|++++|..||...+.......+..   .. ...+                       ..... +++
T Consensus       179 ~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (287)
T cd07840         179 YGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDP  258 (287)
T ss_pred             CChHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhcccCCH
Confidence            78999999999999999999999976554322221110   00 0000                       00111 388


Q ss_pred             HHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         210 EFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       210 ~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      ++.+++.+||+.+|++||++++++.||||
T Consensus       259 ~~~~~i~~~l~~~P~~Rp~~~~~l~~~~~  287 (287)
T cd07840         259 SALDLLDKLLTLDPKKRISADQALQHEYF  287 (287)
T ss_pred             HHHHHHHHHcCCChhhCcCHHHHhhCcCC
Confidence            89999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=100.00  E-value=4.9e-35  Score=247.47  Aligned_cols=204  Identities=27%  Similarity=0.477  Sum_probs=156.8

Q ss_pred             CCCCCCCccceeeeeEeeC--------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR   72 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~   72 (251)
                      |++++||||+++++++...        ..+++|+||+.+ +|...+......+++..++.++.|++.||.|||++|++|+
T Consensus        61 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~-~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~  139 (311)
T cd07866          61 LKKLKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENHILHR  139 (311)
T ss_pred             HHhcCCCCccchhhheecccccccccCceEEEEEecCCc-CHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecC
Confidence            3578999999999987543        347999999964 7877776555689999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-----------cccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-----------RNTV  141 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-----------~~~~  141 (251)
                      |||                                 |+||+++.++.++|+|||++.........           ....
T Consensus       140 dl~---------------------------------p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (311)
T cd07866         140 DIK---------------------------------AANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNL  186 (311)
T ss_pred             CCC---------------------------------HHHEEECCCCCEEECcCccchhccCCCcccccCCcccccccccc
Confidence            988                                 88999999999999999999754322111           1122


Q ss_pred             cccccccccccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CCC--------------------
Q psy3253         142 IGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TKP--------------------  197 (251)
Q Consensus       142 ~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~~--------------------  197 (251)
                      .+++.|+|||.+.+ ..++.++||||+||++|+|++|.+||.+.+.......+.   ...                    
T Consensus       187 ~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (311)
T cd07866         187 VVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVHSF  266 (311)
T ss_pred             eeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccccC
Confidence            45677999998765 457889999999999999999999996554432211110   000                    


Q ss_pred             ---CCC-CCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         198 ---PPS-FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       198 ---~~~-~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                         +.. .......++.+.+++.+||..||++|||+.|+++||||
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~~~f  311 (311)
T cd07866         267 TNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALEHPYF  311 (311)
T ss_pred             CCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhcCCCC
Confidence               000 00012345778999999999999999999999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=100.00  E-value=1.3e-34  Score=247.89  Aligned_cols=208  Identities=23%  Similarity=0.419  Sum_probs=160.8

Q ss_pred             CC-CCCccceeeeeEeeC----CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           3 QC-DSPYVVKYYGSYFKN----TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~----~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      ++ +||||+++++.+...    ...++++||+. ++|.+++. ....+++..++.++.||+.||.|||++|++|||||  
T Consensus        57 ~l~~h~~iv~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~-~~~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlk--  132 (332)
T cd07857          57 HFRGHKNITCLYDMDIVFPGNFNELYLYEELME-ADLHQIIR-SGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLK--  132 (332)
T ss_pred             HhcCCCChheeeeeeeeccccCCcEEEEEeccc-CCHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC--
Confidence            45 699999999875432    45789999995 69998886 45789999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc----ccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA----KRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~  153 (251)
                                                     |+||+++.++.++|+|||.+........    ......++..|+|||.+
T Consensus       133 -------------------------------p~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~  181 (332)
T cd07857         133 -------------------------------PGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIM  181 (332)
T ss_pred             -------------------------------HHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHHH
Confidence                                           8888888889999999999976543211    11223578889999987


Q ss_pred             cc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---------------------------CCCCCCC-CCC
Q psy3253         154 QE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---------------------------TKPPPSF-REP  204 (251)
Q Consensus       154 ~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---------------------------~~~~~~~-~~~  204 (251)
                      .+ ..++.++|+||+|+++|++++|.+||...+.......+.                           ......+ ...
T Consensus       182 ~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (332)
T cd07857         182 LSFQSYTKAIDVWSVGCILAELLGRKPVFKGKDYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIF  261 (332)
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCCCHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhC
Confidence            55 568899999999999999999999997654322111100                           0000000 112


Q ss_pred             CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         205 DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       205 ~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      ...+..+.+++.+||+.||++|||++|++.|||++......
T Consensus       262 ~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~~~~~~  302 (332)
T cd07857         262 PNANPLALDLLEKLLAFDPTKRISVEEALEHPYLAIWHDPD  302 (332)
T ss_pred             CCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhhhhcCcc
Confidence            33578999999999999999999999999999998776543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1e-34  Score=249.65  Aligned_cols=207  Identities=28%  Similarity=0.482  Sum_probs=163.8

Q ss_pred             CCCCCCCccceeeeeEeeCC------eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT------DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~------~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |++++||||+++++++..+.      ..++||||+ +++|.+++.  ...+++..++.++.|++.||.|||+.|++||||
T Consensus        68 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~--~~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dl  144 (343)
T cd07880          68 LKHMKHENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMK--HEKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDL  144 (343)
T ss_pred             HHhcCCCCccceeeeecCCccccccceEEEEEecC-CCCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCC
Confidence            45789999999999987543      469999999 779998875  457999999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                      |                                 |+||+++.++.++++|||++......   .....+++.|+|||.+.
T Consensus       145 k---------------------------------p~Nill~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~  188 (343)
T cd07880         145 K---------------------------------PGNLAVNEDCELKILDFGLARQTDSE---MTGYVVTRWYRAPEVIL  188 (343)
T ss_pred             C---------------------------------HHHEEEcCCCCEEEeecccccccccC---ccccccCCcccCHHHHh
Confidence            8                                 88889988999999999998754322   22335678899999986


Q ss_pred             c-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---C------------------------CCCC-CCCCC
Q psy3253         155 E-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---K------------------------PPPS-FREPD  205 (251)
Q Consensus       155 ~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~------------------------~~~~-~~~~~  205 (251)
                      + ..++.++|+||+|+++|++++|..||.+.+.......+..   .                        .... .....
T Consensus       189 ~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (343)
T cd07880         189 NWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLDQLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLP  268 (343)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhcc
Confidence            5 4578899999999999999999999976543222111100   0                        0000 01124


Q ss_pred             CCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCC
Q psy3253         206 VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPS  246 (251)
Q Consensus       206 ~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~  246 (251)
                      .+++.+.++|.+||..||++|||+.+++.||||+.......
T Consensus       269 ~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~~~~~  309 (343)
T cd07880         269 NANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFHDPED  309 (343)
T ss_pred             CCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhcCccc
Confidence            56888999999999999999999999999999998755443

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=100.00  E-value=1.6e-34  Score=241.91  Aligned_cols=200  Identities=22%  Similarity=0.430  Sum_probs=157.4

Q ss_pred             CCCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++...  ...++||||+++++|.+++......+++..+..++.|++.||+|||++|++|||||   
T Consensus        60 l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlk---  136 (284)
T cd05079          60 LRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLA---  136 (284)
T ss_pred             HHhCCCCCeeeeeeEEecCCCCceEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccc---
Confidence            3578999999999998764  56899999999999999997555578999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---ccccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~  155 (251)
                                                    |+||+++.++.++|+|||++........   ......++..|+|||.+.+
T Consensus       137 ------------------------------p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~  186 (284)
T cd05079         137 ------------------------------ARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQ  186 (284)
T ss_pred             ------------------------------hheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhcc
Confidence                                          8888888889999999999975543211   1122345667999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCc---------------chhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhh
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHP---------------MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLV  220 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  220 (251)
                      ..++.++|+||+|+++|+++++..|......               ......+...  ...+.+..++..+.+|+.+||+
T Consensus       187 ~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~  264 (284)
T cd05079         187 SKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEG--KRLPRPPNCPEEVYQLMRKCWE  264 (284)
T ss_pred             CCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcC--ccCCCCCCCCHHHHHHHHHHcc
Confidence            8899999999999999999997765422100               0000001111  1222345678999999999999


Q ss_pred             cCcCccCCHHHHhcC
Q psy3253         221 KNPEERATASEMLNH  235 (251)
Q Consensus       221 ~~p~~Rps~~evl~h  235 (251)
                      .+|++|||++++++.
T Consensus       265 ~~p~~Rpt~~~il~~  279 (284)
T cd05079         265 FQPSKRTTFQNLIEG  279 (284)
T ss_pred             CCcccCcCHHHHHHH
Confidence            999999999999853

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=100.00  E-value=6.3e-35  Score=250.86  Aligned_cols=208  Identities=27%  Similarity=0.470  Sum_probs=157.8

Q ss_pred             CCCCCCCccceeeeeEeeC--------------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--------------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL   66 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--------------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~   66 (251)
                      |++++||||+++++++...              ...|+||||+. ++|.+++.  ...+++..++.++.||+.||.|||+
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH~  132 (342)
T cd07854          56 IRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYME-TDLANVLE--QGPLSEEHARLFMYQLLRGLKYIHS  132 (342)
T ss_pred             HHhcCCCcchhhHhhhcccccccccccccccccceEEEEeeccc-ccHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            3578999999999877543              35799999996 59988875  4579999999999999999999999


Q ss_pred             CCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCC-CCCeEecccccccccCccccc---ccccc
Q psy3253          67 RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-EGHAKLADFGVAGQLTDTMAK---RNTVI  142 (251)
Q Consensus        67 ~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~-~~~~kl~dfg~~~~~~~~~~~---~~~~~  142 (251)
                      .|++|||||                                 |+||+++. ++.++++|||.+.........   .....
T Consensus       133 ~givH~dik---------------------------------p~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~  179 (342)
T cd07854         133 ANVLHRDLK---------------------------------PANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGL  179 (342)
T ss_pred             CCcccCCCC---------------------------------HHHEEEcCCCceEEECCcccceecCCcccccccccccc
Confidence            999999988                                 77777763 456899999998654321111   11224


Q ss_pred             ccccccccccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC------------------------C
Q psy3253         143 GTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK------------------------P  197 (251)
Q Consensus       143 ~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~------------------------~  197 (251)
                      ++..|+|||.+.+ ..++.++|+|||||++|++++|..||...+...........                        .
T Consensus       180 ~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (342)
T cd07854         180 VTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGG  259 (342)
T ss_pred             ccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhccc
Confidence            6778999998754 55788999999999999999999999654432222111100                        0


Q ss_pred             CCC---CCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         198 PPS---FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       198 ~~~---~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      ...   ......++.++.+++.+||+.||++|||++|+++||||+...+.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h~~~~~~~~~  309 (342)
T cd07854         260 EPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMHPYMSCYSCP  309 (342)
T ss_pred             ccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCCCccccccCC
Confidence            000   00123467889999999999999999999999999999876554

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=100.00  E-value=8.6e-35  Score=242.97  Aligned_cols=202  Identities=30%  Similarity=0.536  Sum_probs=159.7

Q ss_pred             CCCC-CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           2 QQCD-SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         2 ~~l~-hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      ++++ ||||+++++++..+...++||||+ +|+|.+++.... ..+++..+..++.|++.||.|||++|++|+||+    
T Consensus        52 ~~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~----  126 (283)
T cd07830          52 RKLNEHPNIVKLKEVFRENDELYFVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLK----  126 (283)
T ss_pred             HhccCCCCchhHHHHhhcCCcEEEEEecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC----
Confidence            3566 999999999999999999999999 779999887443 478999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc-cCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-EIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-~~~~  158 (251)
                                                   |+||+++.++.++|+|||.+....... ......++..|+|||.+. ...+
T Consensus       127 -----------------------------~~ni~i~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~~aPE~~~~~~~~  176 (283)
T cd07830         127 -----------------------------PENLLVSGPEVVKIADFGLAREIRSRP-PYTDYVSTRWYRAPEILLRSTSY  176 (283)
T ss_pred             -----------------------------hhhEEEcCCCCEEEeecccceeccCCC-CcCCCCCcccccCceeeecCcCc
Confidence                                         889999999999999999997554321 222345677899999884 4557


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CCC-----------------------CCCC-CCCCCCCHHH
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TKP-----------------------PPSF-REPDVWTPEF  211 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~~-----------------------~~~~-~~~~~~~~~~  211 (251)
                      +.++|+||||++++++++|.+||.............   ...                       .... ......+..+
T Consensus       177 ~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (283)
T cd07830         177 SSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEA  256 (283)
T ss_pred             CCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccCCHHH
Confidence            889999999999999999999996544322211100   000                       0000 0011236789


Q ss_pred             HHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         212 IDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       212 ~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .+++.+||+.+|++|||++|++.||||
T Consensus       257 ~~li~~cl~~~p~~Rpt~~ei~~~~~~  283 (283)
T cd07830         257 IDLIKDMLRWDPKKRPTASQALQHPYF  283 (283)
T ss_pred             HHHHHHhcccCcccCCCHHHHhhCCCC
Confidence            999999999999999999999999997

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=100.00  E-value=2.5e-34  Score=240.47  Aligned_cols=199  Identities=26%  Similarity=0.463  Sum_probs=154.9

Q ss_pred             CCCCCCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++..  ....++||||+.+++|.+++......+++..+..++.|++.||.|||++|++|||||   
T Consensus        59 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlk---  135 (284)
T cd05081          59 LKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLA---  135 (284)
T ss_pred             HHhCCCCCeeEEEEEEccCCCCceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCceeccCC---
Confidence            357899999999998753  346899999999999999997555678999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc---cccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~  155 (251)
                                                    |+||+++.++.++|+|||++.........   .....++..|+|||.+.+
T Consensus       136 ------------------------------p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  185 (284)
T cd05081         136 ------------------------------TRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTE  185 (284)
T ss_pred             ------------------------------HhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhcc
Confidence                                          88889988999999999999755322111   011112345999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh----------------hhhcCCCCCCCCCCCCCCCHHHHHHHHHhh
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA----------------IFMIPTKPPPSFREPDVWTPEFIDFVSRCL  219 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  219 (251)
                      ..++.++|+||+|+++|++++|..++........                ...+...  .....+..++.++.+++.+||
T Consensus       186 ~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~cl  263 (284)
T cd05081         186 SKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNN--GRLPAPPGCPAEIYAIMKECW  263 (284)
T ss_pred             CCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcC--CcCCCCCCCCHHHHHHHHHHc
Confidence            8899999999999999999998766532211100                0001111  122234567899999999999


Q ss_pred             hcCcCccCCHHHHhc
Q psy3253         220 VKNPEERATASEMLN  234 (251)
Q Consensus       220 ~~~p~~Rps~~evl~  234 (251)
                      ..+|++|||++|+++
T Consensus       264 ~~~p~~Rpt~~ei~~  278 (284)
T cd05081         264 NNDPSQRPSFSELAL  278 (284)
T ss_pred             cCChhhCCCHHHHHH
Confidence            999999999999975

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=100.00  E-value=1.6e-34  Score=244.20  Aligned_cols=198  Identities=24%  Similarity=0.414  Sum_probs=160.8

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++... ..++++||+.+|+|.+++......+++..+..++.|++.||.|||++|++|||||      
T Consensus        64 ~~l~h~niv~~~~~~~~~-~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dik------  136 (303)
T cd05110          64 ASMDHPHLVRLLGVCLSP-TIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLA------  136 (303)
T ss_pred             HhCCCCCcccEEEEEcCC-CceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccc------
Confidence            578999999999998654 4789999999999999997656678999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                 |+||+++.++.+||+|||+++.......  ......++..|+|||.+.+..++
T Consensus       137 ---------------------------p~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~  189 (303)
T cd05110         137 ---------------------------ARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFT  189 (303)
T ss_pred             ---------------------------cceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCC
Confidence                                       8888888888899999999975542211  11122345679999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++||||||+++|++++ |..||.+.........+.....  ...+..++..+.+++.+||..+|++||+++++++.
T Consensus       190 ~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~  264 (303)
T cd05110         190 HQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLLEKGER--LPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAE  264 (303)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            99999999999999997 8999976554443333333222  22345578899999999999999999999998764

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=100.00  E-value=2.6e-34  Score=236.70  Aligned_cols=195  Identities=25%  Similarity=0.456  Sum_probs=160.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++|||++++++++..+ ..+++|||+.+++|.+++.... ..+++..+..++.|++.||.|||+.|++|||||    
T Consensus        53 l~~~~~~~i~~~~~~~~~~-~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~----  127 (254)
T cd05083          53 MTKLHHKNLVRLLGVILHN-GLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLA----  127 (254)
T ss_pred             HHhCCCCCcCeEEEEEcCC-CcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccC----
Confidence            3578999999999998654 4799999999999999997443 358999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||.+......   ......+..|+|||.+.+..++
T Consensus       128 -----------------------------p~nili~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~~y~~pe~~~~~~~~  175 (254)
T cd05083         128 -----------------------------ARNILVSEDGVAKVSDFGLARVGSMG---VDNSKLPVKWTAPEALKHKKFS  175 (254)
T ss_pred             -----------------------------cceEEEcCCCcEEECCCccceecccc---CCCCCCCceecCHHHhccCCcC
Confidence                                         88888888899999999998654321   1122335579999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .++|+||+|+++|++++ |..||...........+.....  ...+..+++.+.+++.+||+.+|++||++++++.
T Consensus       176 ~~~Dv~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  249 (254)
T cd05083         176 SKSDVWSYGVLLWEVFSYGRAPYPKMSLKEVKECVEKGYR--MEPPEGCPADVYVLMTSCWETEPKKRPSFHKLRE  249 (254)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhCCCC--CCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            99999999999999997 9999977665554444433322  2234567899999999999999999999999974

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=100.00  E-value=1.8e-34  Score=246.80  Aligned_cols=206  Identities=26%  Similarity=0.491  Sum_probs=161.4

Q ss_pred             CCCCCCCccceeeeeEee-CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK-NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~-~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||++++++|.. ....|+++||+ +++|.++++  ...+++..+..++.|++.||.|||+.|++||||+    
T Consensus        63 l~~l~hpniv~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~--~~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~----  135 (328)
T cd07856          63 LKHLRHENIISLSDIFISPLEDIYFVTELL-GTDLHRLLT--SRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLK----  135 (328)
T ss_pred             HHhcCCCCeeeEeeeEecCCCcEEEEeehh-ccCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC----
Confidence            357899999999999865 56789999999 569988875  4568889999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~  158 (251)
                                                   |+||+++.++.++|+|||.+.....   ......++..|+|||.+.+ ..+
T Consensus       136 -----------------------------p~Nili~~~~~~~l~dfg~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~  183 (328)
T cd07856         136 -----------------------------PSNILINENCDLKICDFGLARIQDP---QMTGYVSTRYYRAPEIMLTWQKY  183 (328)
T ss_pred             -----------------------------HHHEeECCCCCEEeCccccccccCC---CcCCCcccccccCceeeeccCCc
Confidence                                         8888888889999999999865432   1122345778999998765 568


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhh---------------------------cCCCCC-CCCCCCCCCCHH
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM---------------------------IPTKPP-PSFREPDVWTPE  210 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~---------------------------~~~~~~-~~~~~~~~~~~~  210 (251)
                      +.++|+||+||++|++++|.+||...+.......                           ...... +.......++.+
T Consensus       184 ~~~~Dv~slG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (328)
T cd07856         184 DVEVDIWSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPS  263 (328)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCCHH
Confidence            8999999999999999999999965443111100                           000000 000112346789


Q ss_pred             HHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         211 FIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       211 ~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      +.++|.+||+.+|++|||++|++.||||+....+.
T Consensus       264 ~~~li~~~l~~~P~~R~t~~ell~~~~~~~~~~~~  298 (328)
T cd07856         264 AIDLLEKMLVFDPQKRISAAEALAHPYLAPYHDPT  298 (328)
T ss_pred             HHHHHHHHcCCChhhCCCHHHHhcCCccccccCCc
Confidence            99999999999999999999999999997665543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=100.00  E-value=2.9e-34  Score=237.27  Aligned_cols=198  Identities=26%  Similarity=0.437  Sum_probs=161.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++|+||+++++++.. ...+++|||+.+++|.+++... ...+++..+..++.|++.||.|||+.|++|+|||    
T Consensus        55 l~~l~~~~i~~~~~~~~~-~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~----  129 (260)
T cd05073          55 MKTLQHDKLVKLHAVVTK-EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLR----  129 (260)
T ss_pred             HHhcCCCCcceEEEEEcC-CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccC----
Confidence            457899999999999877 6789999999999999999743 3457888999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.++|+|||.+........ ......++..|+|||.+....+
T Consensus       130 -----------------------------p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  180 (260)
T cd05073         130 -----------------------------AANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSF  180 (260)
T ss_pred             -----------------------------cceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCHhHhccCCc
Confidence                                         8888888889999999999865432211 1122234566999999988888


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|+|||||++|++++ |..||.+.+.......+.....  ...+...+.++.+++.+||+.+|++||+++++++
T Consensus       181 ~~~~Di~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05073         181 TIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYR--MPRPENCPEELYNIMMRCWKNRPEERPTFEYIQS  255 (260)
T ss_pred             CccccchHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhCCCC--CCCcccCCHHHHHHHHHHcccCcccCcCHHHHHH
Confidence            999999999999999998 9999987665544444333322  2234567899999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0607|consensus

Probab=100.00  E-value=3.8e-35  Score=238.15  Aligned_cols=209  Identities=23%  Similarity=0.380  Sum_probs=162.3

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      .|+||++++++|+++..+|||||-+.||+|...++ .+..|++.++.++.++|+.||.|||.+||.|||+||+||+-..+
T Consensus       134 gh~nilqLiefFEdd~~FYLVfEKm~GGplLshI~-~~~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~p  212 (463)
T KOG0607|consen  134 GHKNILQLIEFFEDDTRFYLVFEKMRGGPLLSHIQ-KRKHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESP  212 (463)
T ss_pred             CCccHHHHHHHhcccceEEEEEecccCchHHHHHH-HhhhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCC
Confidence            59999999999999999999999999999999987 56789999999999999999999999999999999666544422


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-------ccccccccccccccccccc---
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-------AKRNTVIGTPFWMAPEVIQ---  154 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-------~~~~~~~~~~~y~aPE~~~---  154 (251)
                      .                              .-.-+||+||.+........       ....+..|+..|||||+..   
T Consensus       213 n------------------------------~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv  262 (463)
T KOG0607|consen  213 N------------------------------KVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFV  262 (463)
T ss_pred             C------------------------------CcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhc
Confidence            1                              01128999998875332110       1123345777899999873   


Q ss_pred             --cCCCCcchhHHHHHHHHHHHHhCCCCCCC-------CCcc--------hhhhhcCCCCC-CCCCCCCCCCHHHHHHHH
Q psy3253         155 --EIGYDCVADMWSLGITALEMAEGKPPYGD-------IHPM--------RAIFMIPTKPP-PSFREPDVWTPEFIDFVS  216 (251)
Q Consensus       155 --~~~~~~~~DvwslG~~l~~l~~g~~p~~~-------~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~li~  216 (251)
                        ...|+.++|.||||+++|-|++|.+||.+       ++..        .....+..+.- -+...+.-++.+..++++
T Consensus       263 ~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlis  342 (463)
T KOG0607|consen  263 DQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLIS  342 (463)
T ss_pred             cccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHH
Confidence              34578899999999999999999999943       2221        12222333311 122235667899999999


Q ss_pred             HhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         217 RCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       217 ~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      .+|..++.+|.++.++++|||+++...+
T Consensus       343 nLlvrda~~rlsa~~vlnhPw~~~~~~e  370 (463)
T KOG0607|consen  343 NLLVRDAKQRLSAAQVLNHPWVQRCAPE  370 (463)
T ss_pred             HHHhccHHhhhhhhhccCCccccccchh
Confidence            9999999999999999999999987655

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=100.00  E-value=4.2e-34  Score=237.22  Aligned_cols=198  Identities=25%  Similarity=0.517  Sum_probs=163.8

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCC
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGS   78 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~N   78 (251)
                      .++||||+++++++..+.+.+++|||+++++|.+++..   ....+++..++.++.|++.||.|||+ .|++|+|||   
T Consensus        65 ~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~---  141 (269)
T cd08528          65 QLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLT---  141 (269)
T ss_pred             cCCCCCeeeEEeeEccCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCC---
Confidence            47899999999999999999999999999999998742   34578999999999999999999996 789999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                    |+||+++.++.++|+|||.+....... ......++..|+|||.+.+..+
T Consensus       142 ------------------------------~~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~  190 (269)
T cd08528         142 ------------------------------PNNIMLGEDDKVTITDFGLAKQKQPES-KLTSVVGTILYSCPEIVKNEPY  190 (269)
T ss_pred             ------------------------------HHHEEECCCCcEEEecccceeeccccc-ccccccCcccCcChhhhcCCCC
Confidence                                          889999999999999999997654432 2334457788999999988889


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      +.++|+||||+++|++++|.+||...+.......+........ ....+++.+.+++.+||+.||++||++.|+.++
T Consensus       191 ~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~  266 (269)
T cd08528         191 GEKADVWAFGCILYQMCTLQPPFYSTNMLSLATKIVEAVYEPL-PEGMYSEDVTDVITSCLTPDAEARPDIIQVSAM  266 (269)
T ss_pred             chHHHHHHHHHHHHHHHhCCCcccccCHHHHHHHHhhccCCcC-CcccCCHHHHHHHHHHCCCCCccCCCHHHHHHH
Confidence            9999999999999999999999976655444433333221111 123568999999999999999999999998753

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=1e-34  Score=249.55  Aligned_cols=205  Identities=27%  Similarity=0.485  Sum_probs=160.3

Q ss_pred             CCCCCCCccceeeeeEeeC------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |++++||||+++++++...      ...++|+||+. .+|.++.   +..+++..+..++.|++.||.|||+.|++||||
T Consensus        68 l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~---~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl  143 (342)
T cd07879          68 LKHMQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQ-TDLQKIM---GHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDL  143 (342)
T ss_pred             HHhcCCCCccchhheecccccCCCCceEEEEecccc-cCHHHHH---cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCC
Confidence            3568999999999998754      24699999995 4777654   357899999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                      |                                 |+||+++.++.++|+|||++......   .....++..|+|||.+.
T Consensus       144 k---------------------------------p~NIll~~~~~~kL~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~  187 (342)
T cd07879         144 K---------------------------------PGNLAVNEDCELKILDFGLARHADAE---MTGYVVTRWYRAPEVIL  187 (342)
T ss_pred             C---------------------------------HHHEEECCCCCEEEeeCCCCcCCCCC---CCCceeeecccChhhhc
Confidence            8                                 88999999999999999998654321   22335677899999986


Q ss_pred             c-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC---C-------------------CCCCC------CCC
Q psy3253         155 E-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK---P-------------------PPSFR------EPD  205 (251)
Q Consensus       155 ~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~---~-------------------~~~~~------~~~  205 (251)
                      + ..++.++|+||+||++|+|++|+.||.+.+.......+...   .                   .+...      ...
T Consensus       188 ~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (342)
T cd07879         188 NWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFP  267 (342)
T ss_pred             CccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhc
Confidence            5 45788999999999999999999999765433222111100   0                   00000      012


Q ss_pred             CCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         206 VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       206 ~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      ..++.+.++|.+||+.||++||+++|++.||||+......
T Consensus       268 ~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~~~  307 (342)
T cd07879         268 KASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRDAD  307 (342)
T ss_pred             CCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhccccc
Confidence            4578899999999999999999999999999999876644

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=100.00  E-value=4.7e-34  Score=245.74  Aligned_cols=204  Identities=23%  Similarity=0.475  Sum_probs=159.8

Q ss_pred             CCCCCCCccceeeeeEeeC------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |++++||||+++++++...      ...|++++++ +++|.++++  ...+++..+..++.|++.||.|||++|++||||
T Consensus        70 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~~~~-~~~L~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dl  146 (345)
T cd07877          70 LKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVK--CQKLTDDHVQFLIYQILRGLKYIHSADIIHRDL  146 (345)
T ss_pred             HHHcCCCcccceeeeeeecccccccccEEEEehhc-ccCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCC
Confidence            3568999999999988643      3478899988 779988875  346999999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                      |                                 |+||+++.++.++|+|||++......   .....++..|+|||.+.
T Consensus       147 k---------------------------------p~NIll~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~  190 (345)
T cd07877         147 K---------------------------------PSNLAVNEDCELKILDFGLARHTDDE---MTGYVATRWYRAPEIML  190 (345)
T ss_pred             C---------------------------------hHHEEEcCCCCEEEeccccccccccc---ccccccCCCccCHHHHh
Confidence            8                                 88889988999999999998654322   22345678899999986


Q ss_pred             c-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---------------------------CCCCCCC-CCCC
Q psy3253         155 E-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---------------------------TKPPPSF-REPD  205 (251)
Q Consensus       155 ~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---------------------------~~~~~~~-~~~~  205 (251)
                      + ..++.++|+||+||++|++++|.+||...+.......+.                           ......+ ....
T Consensus       191 ~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (345)
T cd07877         191 NWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFI  270 (345)
T ss_pred             CccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcC
Confidence            5 568889999999999999999999996544322211100                           0000000 0112


Q ss_pred             CCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         206 VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       206 ~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                      ..++++.++|.+||+.||++|||+.++++||||++...
T Consensus       271 ~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~f~~~~~  308 (345)
T cd07877         271 GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  308 (345)
T ss_pred             CCCHHHHHHHHHHcCCChhhcCCHHHHhcChhhhhcCC
Confidence            45888999999999999999999999999999986443

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=100.00  E-value=3.8e-34  Score=250.55  Aligned_cols=199  Identities=25%  Similarity=0.450  Sum_probs=159.7

Q ss_pred             CCCC-CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC--------------------------------------
Q psy3253           2 QQCD-SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK--------------------------------------   42 (251)
Q Consensus         2 ~~l~-hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~--------------------------------------   42 (251)
                      .+++ ||||+++++++....+.++||||+.+|+|.++++..+                                      
T Consensus        95 ~~l~~H~niv~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (401)
T cd05107          95 SHLGPHLNIVNLLGACTKGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSES  174 (401)
T ss_pred             HhcCCCCCeEEEEEEEccCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhcc
Confidence            4566 9999999999999999999999999999999996432                                      


Q ss_pred             -----------------------------------------------------------CCCCHHHHHHHHHHHHHHHHH
Q psy3253          43 -----------------------------------------------------------KTLSEDEIATILCDTLKGLEY   63 (251)
Q Consensus        43 -----------------------------------------------------------~~l~~~~~~~~~~~i~~~l~~   63 (251)
                                                                                 ..+++..++.++.|++.||.|
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~  254 (401)
T cd05107         175 DGGYMDMSKDESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEF  254 (401)
T ss_pred             CccccccCCccccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence                                                                       135667788899999999999


Q ss_pred             HHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccc
Q psy3253          64 LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTV  141 (251)
Q Consensus        64 LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~  141 (251)
                      ||+.|++|||||                                 |+||+++.++.++|+|||+++.......  .....
T Consensus       255 LH~~~ivHrdlk---------------------------------p~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~  301 (401)
T cd05107         255 LASKNCVHRDLA---------------------------------ARNVLICEGKLVKICDFGLARDIMRDSNYISKGST  301 (401)
T ss_pred             HhcCCcCcccCC---------------------------------cceEEEeCCCEEEEEecCcceecccccccccCCCc
Confidence            999999999988                                 8888888888999999999975432211  11223


Q ss_pred             ccccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhh-cCCCCCCCCCCCCCCCHHHHHHHHHhh
Q psy3253         142 IGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFM-IPTKPPPSFREPDVWTPEFIDFVSRCL  219 (251)
Q Consensus       142 ~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l  219 (251)
                      .++..|+|||.+.+..++.++|+||+|+++|++++ |..||........... +....  ....+..++.++.+++.+||
T Consensus       302 ~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~l~~li~~cl  379 (401)
T cd05107         302 FLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGY--RMAKPAHASDEIYEIMQKCW  379 (401)
T ss_pred             CCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchHHHHHHHHcCC--CCCCCCCCCHHHHHHHHHHc
Confidence            45678999999988889999999999999999998 8899866544333222 22222  22235567899999999999


Q ss_pred             hcCcCccCCHHHHhcC
Q psy3253         220 VKNPEERATASEMLNH  235 (251)
Q Consensus       220 ~~~p~~Rps~~evl~h  235 (251)
                      ..+|++||+++|+++.
T Consensus       380 ~~~P~~RPs~~ell~~  395 (401)
T cd05107         380 EEKFEIRPDFSQLVHL  395 (401)
T ss_pred             CCChhHCcCHHHHHHH
Confidence            9999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>KOG1187|consensus

Probab=100.00  E-value=3.2e-34  Score=246.50  Aligned_cols=200  Identities=29%  Similarity=0.445  Sum_probs=157.0

Q ss_pred             CCCCCCCccceeeeeEeeCC-eEEEEEEccCCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT-DLWIVMEYCGAGSVSDIMRLRKK-TLSEDEIATILCDTLKGLEYLHLRR---KIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~-~~~lv~e~~~~gsL~~~~~~~~~-~l~~~~~~~~~~~i~~~l~~LH~~~---iiH~dik   75 (251)
                      |.+++|||+|+++|+|.+.. +.+||+||+..|+|.+.+..... .++|.....|+..++.||.|||+..   |||||||
T Consensus       125 ls~l~H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiK  204 (361)
T KOG1187|consen  125 LSRLRHPNLVKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIK  204 (361)
T ss_pred             HhcCCCcCcccEEEEEecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCC
Confidence            46789999999999999888 59999999999999999985555 8999999999999999999999854   9999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccc-ccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTV-IGTPFWMAPEVIQ  154 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~-~~~~~y~aPE~~~  154 (251)
                                                       ++||+++.+...||+|||+|+............ .||..|+|||+..
T Consensus       205 ---------------------------------ssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~  251 (361)
T KOG1187|consen  205 ---------------------------------SSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYAS  251 (361)
T ss_pred             ---------------------------------HHHeeECCCCCEEccCccCcccCCccccceeeecCCCCccCChhhhc
Confidence                                             999999999999999999996544311222222 7899999999998


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCC---cchhhhh----cCC-----CCCCCCCCCCCCC-----HHHHHHHHH
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFM----IPT-----KPPPSFREPDVWT-----PEFIDFVSR  217 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~---~~~~~~~----~~~-----~~~~~~~~~~~~~-----~~~~~li~~  217 (251)
                      ....+.++||||||+++.|+++|+.+.....   ......+    +..     ...+.+.. ...+     ..+..+..+
T Consensus       252 ~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~~~~~~~~~~~eiiD~~l~~-~~~~~~~~~~~~~~~a~~  330 (361)
T KOG1187|consen  252 TGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWAKPLLEEGKLREIVDPRLKE-GEYPDEKEVKKLAELALR  330 (361)
T ss_pred             cCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHHHHHHHCcchhheeCCCccC-CCCChHHHHHHHHHHHHH
Confidence            8899999999999999999999998775321   1111111    111     11111110 2223     225678889


Q ss_pred             hhhcCcCccCCHHHHhc
Q psy3253         218 CLVKNPEERATASEMLN  234 (251)
Q Consensus       218 ~l~~~p~~Rps~~evl~  234 (251)
                      |++.+|++||++.||++
T Consensus       331 C~~~~~~~RP~m~~Vv~  347 (361)
T KOG1187|consen  331 CLRPDPKERPTMSQVVK  347 (361)
T ss_pred             HcCcCCCcCcCHHHHHH
Confidence            99999999999999854

>KOG4278|consensus

Probab=100.00  E-value=1.4e-34  Score=252.03  Aligned_cols=199  Identities=22%  Similarity=0.402  Sum_probs=171.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |+.+.|||+|+++|+|..+..+|+|+|||..|+|.+|++..+ ..++.-..+.++-||..|+.||..+++|||||-    
T Consensus       317 MKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLA----  392 (1157)
T KOG4278|consen  317 MKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLA----  392 (1157)
T ss_pred             HHhhcCccHHHHhhhhccCCCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhh----
Confidence            688999999999999999999999999999999999998554 456667778889999999999999999999966    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   .+|+++.++..+|++|||+++....+.. -+.......-|.|||.+....+
T Consensus       393 -----------------------------ARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtF  443 (1157)
T KOG4278|consen  393 -----------------------------ARNCLVGENHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTF  443 (1157)
T ss_pred             -----------------------------hhhccccccceEEeeccchhhhhcCCceecccCccCcccccCccccccccc
Confidence                                         7788888888999999999987765432 2333445667999999999999


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|||+||+++|++.| |-.||.+.+....+..+..+.  ....+.+|++.+.+||..||+|+|.+||++.|+-+
T Consensus       444 SiKSDVWAFGVLLWEIATYGMsPYPGidlSqVY~LLEkgy--RM~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHq  518 (1157)
T KOG4278|consen  444 SIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGY--RMDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQ  518 (1157)
T ss_pred             ccchhhHHHHHHHHHHHhcCCCCCCCccHHHHHHHHhccc--cccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHH
Confidence            999999999999999987 999999988777766555554  44568999999999999999999999999999853

>KOG0662|consensus

Probab=100.00  E-value=6.1e-35  Score=220.04  Aligned_cols=208  Identities=23%  Similarity=0.424  Sum_probs=172.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+++.|.|||+++++...+..+-+|+|||. .+|..|....++.++.+.++.++.|++.||.|+|++++.|||+|     
T Consensus        55 lkelkhknivrl~dvlhsdkkltlvfe~cd-qdlkkyfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdlk-----  128 (292)
T KOG0662|consen   55 LKELKHKNIVRLHDVLHSDKKLTLVFEFCD-QDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLK-----  128 (292)
T ss_pred             HHHhhhcceeehhhhhccCceeEEeHHHhh-HHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCC-----
Confidence            468899999999999999999999999995 59999998788999999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC-CC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~  159 (251)
                                                  |+|.+++.+|.+|++|||+++.++-+....+...-|.+|++|.++.+.+ |+
T Consensus       129 ----------------------------pqnllin~ngelkladfglarafgipvrcysaevvtlwyrppdvlfgakly~  180 (292)
T KOG0662|consen  129 ----------------------------PQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYS  180 (292)
T ss_pred             ----------------------------cceEEeccCCcEEecccchhhhcCCceEeeeceeeeeeccCcceeeeeehhc
Confidence                                        9999999999999999999998876655555666788999999998754 78


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhh---cCCCCCC-CCCC-------------C---------CCCCHHHH
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFM---IPTKPPP-SFRE-------------P---------DVWTPEFI  212 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~---~~~~~~~-~~~~-------------~---------~~~~~~~~  212 (251)
                      ...|+||.||++.|+.. |.+.|.+.+.......   +...+.. .++.             +         +.++..-+
T Consensus       181 tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~wps~t~lpdyk~yp~ypattswsqivp~lns~gr  260 (292)
T KOG0662|consen  181 TSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQWPSMTKLPDYKPYPIYPATTSWSQIVPKLNSTGR  260 (292)
T ss_pred             cchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCccccCCccccCCCCcccCCccccchHHHHhhhhcchhH
Confidence            89999999999999986 8888887765544332   2222110 0000             0         11233458


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                      ++++++|.-+|.+|++++++++||||....
T Consensus       261 dllqkll~cnp~qrisaeaalqhpyf~d~s  290 (292)
T KOG0662|consen  261 DLLQKLLKCNPAQRISAEAALQHPYFSDFS  290 (292)
T ss_pred             HHHHHHhccCcccccCHHHHhcCccccccC
Confidence            999999999999999999999999998653

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=100.00  E-value=6.1e-34  Score=244.87  Aligned_cols=199  Identities=30%  Similarity=0.521  Sum_probs=156.3

Q ss_pred             CCC-CCCccceeeeeEeeC-CeEEEEEEccCCCCHHHHHHHhC-------------------------------------
Q psy3253           2 QQC-DSPYVVKYYGSYFKN-TDLWIVMEYCGAGSVSDIMRLRK-------------------------------------   42 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~-~~~~lv~e~~~~gsL~~~~~~~~-------------------------------------   42 (251)
                      .++ +||||+++++++... ...+++|||+++|+|.++++...                                     
T Consensus        65 ~~l~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (343)
T cd05103          65 IHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSS  144 (343)
T ss_pred             HhccCCccHhhhcceeecCCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccc
Confidence            355 689999999988654 46899999999999999986432                                     


Q ss_pred             -----------------------------CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccc
Q psy3253          43 -----------------------------KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKC   93 (251)
Q Consensus        43 -----------------------------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~   93 (251)
                                                   ..++...+..++.|++.||.|||++|++|||||                  
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dik------------------  206 (343)
T cd05103         145 QSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLA------------------  206 (343)
T ss_pred             cccccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCc------------------
Confidence                                         236777888999999999999999999999988                  


Q ss_pred             cccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCCCCcchhHHHHHHHH
Q psy3253          94 NVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITA  171 (251)
Q Consensus        94 ~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l  171 (251)
                                     |+||+++.++.++|+|||++........  ......++..|+|||.+.+..++.++|+||||+++
T Consensus       207 ---------------p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l  271 (343)
T cd05103         207 ---------------ARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLL  271 (343)
T ss_pred             ---------------cCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHH
Confidence                           8888888889999999999875432211  12223345679999999888899999999999999


Q ss_pred             HHHHh-CCCCCCCCCcchhh-hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         172 LEMAE-GKPPYGDIHPMRAI-FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       172 ~~l~~-g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      |++++ |..||......... ..+....  ....+...++++.+++.+||..||++|||++|+++|
T Consensus       272 ~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~cl~~~p~~Rps~~eil~~  335 (343)
T cd05103         272 WEIFSLGASPYPGVKIDEEFCRRLKEGT--RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  335 (343)
T ss_pred             HHHHHCCCCCCCCccccHHHHHHHhccC--CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            99997 99999665433222 2222221  122344568899999999999999999999999976

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG0665|consensus

Probab=100.00  E-value=3.9e-35  Score=237.82  Aligned_cols=201  Identities=26%  Similarity=0.443  Sum_probs=159.3

Q ss_pred             CCCCCCCccceeeeeEeeC------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |..++|+|+++++.+|.-.      ...|+|||+|. .+|.+.+.   ..++...+..++.|++.|+++||+.||+|||+
T Consensus        69 ~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~-~nl~~vi~---~elDH~tis~i~yq~~~~ik~lhs~~IihRdL  144 (369)
T KOG0665|consen   69 MKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMD-ANLCQVIL---MELDHETISYILYQMLCGIKHLHSAGIIHRDL  144 (369)
T ss_pred             hhhhcccceeeeeeccCccccHHHHHhHHHHHHhhh-hHHHHHHH---HhcchHHHHHHHHHHHHHHHHHHhcceeeccc
Confidence            3567999999999999522      35899999995 59999886   67889999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                      |                                 |+||++..++.+||.|||+++..... ........+..|.|||++.
T Consensus       145 k---------------------------------Psnivv~~~~~lKi~dfg~ar~e~~~-~~mtpyVvtRyyrapevil  190 (369)
T KOG0665|consen  145 K---------------------------------PSNIVVNSDCTLKILDFGLARTEDTD-FMMTPYVVTRYYRAPEVIL  190 (369)
T ss_pred             C---------------------------------cccceecchhheeeccchhhcccCcc-cccCchhheeeccCchhee
Confidence            8                                 88889999999999999999765443 2233345677899999999


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---CCCCC------------------CC-------------
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---PTKPP------------------PS-------------  200 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---~~~~~------------------~~-------------  200 (251)
                      +..+...+||||+||++.+|++|+..|.+.+.......+   ...+.                  +.             
T Consensus       191 ~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~  270 (369)
T KOG0665|consen  191 GMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDS  270 (369)
T ss_pred             ccCCcccchhhhhhhHHHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcc
Confidence            988999999999999999999999998654333222211   00000                  00             


Q ss_pred             -----CCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhh
Q psy3253         201 -----FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ  239 (251)
Q Consensus       201 -----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~  239 (251)
                           ......-...+++++.+||..||++|.|++++|+|||++
T Consensus       271 ~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~HPY~~  314 (369)
T KOG0665|consen  271 LFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRHPYIK  314 (369)
T ss_pred             cccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcCCeee
Confidence                 000111235579999999999999999999999999997

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=100.00  E-value=6.3e-34  Score=263.52  Aligned_cols=106  Identities=25%  Similarity=0.404  Sum_probs=86.1

Q ss_pred             ccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhc
Q psy3253         142 IGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVK  221 (251)
Q Consensus       142 ~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  221 (251)
                      .||+.|+|||++.+..++.++|||||||++|+|++|.+||.+.........+.............++..+.+++.+||..
T Consensus       541 vGT~~Y~APE~l~~~~~~~~~DiwSlG~il~ElltG~~pf~~~~~~~~~~~il~~~~~~p~~~~~~~~~~~~~l~~lL~~  620 (669)
T cd05610         541 LGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQQVFQNILNRDIPWPEGEEKLSVNAQNAIEILLTM  620 (669)
T ss_pred             eeCccccCHHHcCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcCCCCCcccccCCHHHHHHHHHHccc
Confidence            57899999999999889999999999999999999999998766655544443322111112335788899999999999


Q ss_pred             CcCccCCHHHHhcChhhhhccCCCCC
Q psy3253         222 NPEERATASEMLNHEFIQRHDTDPSQ  247 (251)
Q Consensus       222 ~p~~Rps~~evl~hp~~~~~~~~~~~  247 (251)
                      ||.+||+++|+++||||...+|++.+
T Consensus       621 dP~~R~ta~e~l~h~~~~~~~~~~~~  646 (669)
T cd05610         621 DPTKRAGLKELKQHPLFHGVDWENLQ  646 (669)
T ss_pred             ChhHCcCHHHHHhCHhhcCCCHHHhc
Confidence            99999999999999999988776543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=100.00  E-value=9.2e-34  Score=236.59  Aligned_cols=200  Identities=26%  Similarity=0.474  Sum_probs=158.7

Q ss_pred             CCCCCCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++..  +...+++|||+.+++|.+++......+++..+..++.|++.||.|||+.|++|+|||   
T Consensus        60 l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~---  136 (284)
T cd05038          60 LRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLA---  136 (284)
T ss_pred             HHhCCCCChheEEeeeecCCCCceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCCeecCCCC---
Confidence            357899999999999876  567999999999999999997555579999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc---cccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~  155 (251)
                                                    |+||+++.++.++|+|||.+.........   .....++..|+|||.+.+
T Consensus       137 ------------------------------p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~  186 (284)
T cd05038         137 ------------------------------ARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRT  186 (284)
T ss_pred             ------------------------------HHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHcc
Confidence                                          88899988999999999999765422111   111223456999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh--------------hhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhc
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA--------------IFMIPTKPPPSFREPDVWTPEFIDFVSRCLVK  221 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  221 (251)
                      ..++.++|+||||+++|+|++|..|+........              ....... ......+..++.++.+++.+||+.
T Consensus       187 ~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~cl~~  265 (284)
T cd05038         187 SKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKE-GERLPRPPSCPDEVYDLMKLCWEA  265 (284)
T ss_pred             CCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHc-CCcCCCCccCCHHHHHHHHHHhcc
Confidence            8899999999999999999999998854321110              0011111 112223456788999999999999


Q ss_pred             CcCccCCHHHHhc
Q psy3253         222 NPEERATASEMLN  234 (251)
Q Consensus       222 ~p~~Rps~~evl~  234 (251)
                      +|++|||++|+++
T Consensus       266 ~p~~Rpt~~ei~~  278 (284)
T cd05038         266 EPQDRPSFADLIL  278 (284)
T ss_pred             ChhhCCCHHHHHH
Confidence            9999999999984

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=100.00  E-value=2e-33  Score=228.15  Aligned_cols=202  Identities=41%  Similarity=0.663  Sum_probs=166.4

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++|+|++++++++......++++||+.+++|.+++... ..++...+..++.+++.++.+||+.|++|+||+      
T Consensus        42 ~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~-~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~------  114 (244)
T smart00220       42 KKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKKR-GRLSEDEARFYARQILSALEYLHSNGIIHRDLK------  114 (244)
T ss_pred             HhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHHcCeecCCcC------
Confidence            4679999999999999989999999999999999998733 348999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++++|||.+....... ......++..|+|||.+.+..++.+
T Consensus       115 ---------------------------~~ni~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~~~pE~~~~~~~~~~  166 (244)
T smart00220      115 ---------------------------PENILLDEDGHVKLADFGLARQLDPGG-LLTTFVGTPEYMAPEVLLGKGYGKA  166 (244)
T ss_pred             ---------------------------HHHeEECCCCcEEEccccceeeecccc-ccccccCCcCCCCHHHHccCCCCch
Confidence                                       888999888999999999997654431 2233456778999999988888999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCC-CCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGD-IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +|+||+|++++++++|..||.. .+.......+.............++.++.+++.+||..+|++||++.++++||||
T Consensus       167 ~Di~slG~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~~~~~  244 (244)
T smart00220      167 VDVWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQHPFF  244 (244)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCCCCccccccCCHHHHHHHHHHccCCchhccCHHHHhhCCCC
Confidence            9999999999999999999976 3333333333222222111112278999999999999999999999999999997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG1094|consensus

Probab=100.00  E-value=2.7e-34  Score=248.52  Aligned_cols=201  Identities=20%  Similarity=0.355  Sum_probs=167.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL-SEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l-~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |.+|+|||||+++|+|..++.+|||+||++.|+|.+|+.....+. ......+++.||+.|++||.+.+++|||+-    
T Consensus       589 LsqLkhPNIveLvGVC~~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a----  664 (807)
T KOG1094|consen  589 LSRLKHPNIVELLGVCVQDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLA----  664 (807)
T ss_pred             HhccCCCCeeEEEeeeecCCchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhcccc----
Confidence            568999999999999999999999999999999999998554333 566777899999999999999999999966    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                   +.|+++++++++||+|||+++.......  ..+....+.+|+|+|.+.-++
T Consensus       665 -----------------------------~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgk  715 (807)
T KOG1094|consen  665 -----------------------------TRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGK  715 (807)
T ss_pred             -----------------------------ccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhcc
Confidence                                         9999999999999999999985432222  233445678899999999999


Q ss_pred             CCcchhHHHHHHHHHHHHh--CCCCCCCCCcchhhhhc---C-CC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         158 YDCVADMWSLGITALEMAE--GKPPYGDIHPMRAIFMI---P-TK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~--g~~p~~~~~~~~~~~~~---~-~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      ++.++|+|+||+++||+++  .+.||.....+......   . .. ....+..|..++..+.++|-+||..+-++|||++
T Consensus       716 FttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~vven~~~~~~~~~~~~~l~~P~~cp~~lyelml~Cw~~es~~RPsFe  795 (807)
T KOG1094|consen  716 FTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQVVENAGEFFRDQGRQVVLSRPPACPQGLYELMLRCWRRESEQRPSFE  795 (807)
T ss_pred             ccchhhhhhhHHHHHHHHHHHhhCchhhhhHHHHHHhhhhhcCCCCcceeccCCCcCcHHHHHHHHHHhchhhhcCCCHH
Confidence            9999999999999999765  78899776665554332   1 11 2233456788999999999999999999999999


Q ss_pred             HHhc
Q psy3253         231 EMLN  234 (251)
Q Consensus       231 evl~  234 (251)
                      ++..
T Consensus       796 ~lh~  799 (807)
T KOG1094|consen  796 QLHL  799 (807)
T ss_pred             HHHH
Confidence            9863

>KOG0669|consensus

Probab=100.00  E-value=1.3e-34  Score=228.33  Aligned_cols=210  Identities=24%  Similarity=0.427  Sum_probs=165.1

Q ss_pred             CCCCCCCccceeeeeEeeC--------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR   72 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~   72 (251)
                      |+.+.|+|++.+.++|...        ..+||||.+|+. +|.-++......++..+++.+..+++.||.|+|...|+||
T Consensus        70 L~~lkHenv~nliEic~tk~Tp~~r~r~t~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHR  148 (376)
T KOG0669|consen   70 LQLLKHENVVNLIEICRTKATPTNRDRATFYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNKILHR  148 (376)
T ss_pred             HHHhcchhHHHHHHHHhhccCCcccccceeeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            3568999999999988632        359999999987 9999997666789999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc----cccccccccccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA----KRNTVIGTPFWM  148 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~~~y~  148 (251)
                      |+|                                 +.|+++++++.++|+|||+++.++....    ......-|.+|+
T Consensus       149 DmK---------------------------------aaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYr  195 (376)
T KOG0669|consen  149 DMK---------------------------------AANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYR  195 (376)
T ss_pred             ccc---------------------------------HhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecC
Confidence            988                                 8899999999999999999976543211    112233478899


Q ss_pred             ccccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhh---cCCCCCCC------------------------
Q psy3253         149 APEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM---IPTKPPPS------------------------  200 (251)
Q Consensus       149 aPE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~---~~~~~~~~------------------------  200 (251)
                      +||.+.+ ..++++.|+|+.||++.+|++|.+.+++.+.......   +.....+.                        
T Consensus       196 ppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~~~  275 (376)
T KOG0669|consen  196 PPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKGQK  275 (376)
T ss_pred             CHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcchh
Confidence            9999876 5689999999999999999999998865443322221   11111000                        


Q ss_pred             -----CCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         201 -----FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       201 -----~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                           ...+-.-.++..+|+.++|.+||.+|++++++++|.||-....+
T Consensus       276 rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~alnh~~F~kdp~p  324 (376)
T KOG0669|consen  276 RKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALNHDFFWKDPMP  324 (376)
T ss_pred             hhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhchhhhhcCCcc
Confidence                 00012224678999999999999999999999999999776554

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=100.00  E-value=5e-33  Score=231.13  Aligned_cols=200  Identities=21%  Similarity=0.420  Sum_probs=158.3

Q ss_pred             CCCCCCCccceeeeeEeeCC------eEEEEEEccCCCCHHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHHhCCc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT------DLWIVMEYCGAGSVSDIMRLRK-----KTLSEDEIATILCDTLKGLEYLHLRRK   69 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~------~~~lv~e~~~~gsL~~~~~~~~-----~~l~~~~~~~~~~~i~~~l~~LH~~~i   69 (251)
                      |++++||||+++++++....      ..++++||+.+|+|.+++....     ..++...++.++.|++.||+|||+.|+
T Consensus        55 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i  134 (273)
T cd05074          55 MKEFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNF  134 (273)
T ss_pred             HhcCCCCCcceEEEEEccCCCCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence            46789999999999886432      2478999999999998875221     257889999999999999999999999


Q ss_pred             cccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccc
Q psy3253          70 IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFW  147 (251)
Q Consensus        70 iH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y  147 (251)
                      +|||||                                 |+||+++.++.++++|||.++.......  ......++..|
T Consensus       135 ~H~dik---------------------------------p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~  181 (273)
T cd05074         135 IHRDLA---------------------------------ARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKW  181 (273)
T ss_pred             eecccc---------------------------------hhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhh
Confidence            999988                                 8888888889999999999876532211  11122345679


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         148 MAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       148 ~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      ++||.+.+..++.++||||+||++|++++ |.+||.+.+.......+.....  ...+...+..+.+++.+||+.+|++|
T Consensus       182 ~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~p~~R  259 (273)
T cd05074         182 LALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENSEIYNYLIKGNR--LKQPPDCLEDVYELMCQCWSPEPKCR  259 (273)
T ss_pred             cCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHcCCc--CCCCCCCCHHHHHHHHHHcCCChhhC
Confidence            99999988888999999999999999999 8899976655444433333222  22244578999999999999999999


Q ss_pred             CCHHHHhcC
Q psy3253         227 ATASEMLNH  235 (251)
Q Consensus       227 ps~~evl~h  235 (251)
                      ||++|++..
T Consensus       260 ps~~~~~~~  268 (273)
T cd05074         260 PSFQHLRDQ  268 (273)
T ss_pred             cCHHHHHHH
Confidence            999999853

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0199|consensus

Probab=100.00  E-value=8.7e-34  Score=249.64  Aligned_cols=204  Identities=24%  Similarity=0.430  Sum_probs=172.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~-~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |.+|+|||+++|||+..+ ....||||++.+|||-+.++. ....|.....-.++.||+.|+.||-.+++||||+-    
T Consensus       165 M~~L~H~hliRLyGvVl~-qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLA----  239 (1039)
T KOG0199|consen  165 MLKLQHPHLIRLYGVVLD-QPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLA----  239 (1039)
T ss_pred             HHhccCcceeEEeeeecc-chhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhh----
Confidence            568999999999999987 568999999999999999986 45678888999999999999999999999999976    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccc--c-cccccccccccccccC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN--T-VIGTPFWMAPEVIQEI  156 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~--~-~~~~~~y~aPE~~~~~  156 (251)
                                                   .+|+++..-..+||+|||+.+..........  . ..-..-|+|||.+...
T Consensus       240 -----------------------------ARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~  290 (1039)
T KOG0199|consen  240 -----------------------------ARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHR  290 (1039)
T ss_pred             -----------------------------hhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccc
Confidence                                         6777777777899999999987765432211  1 1123359999999999


Q ss_pred             CCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         157 GYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       157 ~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++.++|||+||+++|||++ |+-||.+.....+...+..  ...+..+..++.++.++++.||..+|++|||+..+.+.
T Consensus       291 kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~--~erLpRPk~csedIY~imk~cWah~paDRptFsair~~  368 (1039)
T KOG0199|consen  291 KFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDA--GERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIRED  368 (1039)
T ss_pred             cccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhccc--cccCCCCCCChHHHHHHHHHhccCCccccccHHHHHHh
Confidence            99999999999999999998 8999998887777766663  34666788999999999999999999999999999765


Q ss_pred             hhhhh
Q psy3253         236 EFIQR  240 (251)
Q Consensus       236 p~~~~  240 (251)
                      -+.++
T Consensus       369 ~~l~e  373 (1039)
T KOG0199|consen  369 LVLAE  373 (1039)
T ss_pred             HHHHh
Confidence            54443

>KOG4236|consensus

Probab=100.00  E-value=1.7e-34  Score=247.50  Aligned_cols=209  Identities=25%  Similarity=0.381  Sum_probs=169.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+++.||.||.+-..|++.+..+.|||-+.|.-|+-.+....+.++++..+.++.||+.||+|||.+||+|+|+|||||+
T Consensus       617 Lq~l~HPGiV~le~M~ET~ervFVVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVL  696 (888)
T KOG4236|consen  617 LQNLHHPGIVNLECMFETPERVFVVMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVL  696 (888)
T ss_pred             HHhcCCCCeeEEEEeecCCceEEEEehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchhee
Confidence            56899999999999999999999999999664444444556789999999999999999999999999999999955554


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                      +.-.                              +.-.++||||||.|+.+++.. ......||+.|.|||++.++.|..
T Consensus       697 Las~------------------------------~~FPQvKlCDFGfARiIgEks-FRrsVVGTPAYLaPEVLrnkGyNr  745 (888)
T KOG4236|consen  697 LASA------------------------------SPFPQVKLCDFGFARIIGEKS-FRRSVVGTPAYLAPEVLRNKGYNR  745 (888)
T ss_pred             eccC------------------------------CCCCceeeccccceeecchhh-hhhhhcCCccccCHHHHhhccccc
Confidence            4411                              122368999999999887654 345568999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCc-chhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHP-MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ  239 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~  239 (251)
                      .-||||+|+++|--++|.+||..... .+.+....--.  +...+..++++..|||..+|+..-.+|.|++..+.|||++
T Consensus       746 SLDMWSVGVIiYVsLSGTFPFNEdEdIndQIQNAaFMy--Pp~PW~eis~~AidlIn~LLqVkm~kRysvdk~lsh~Wlq  823 (888)
T KOG4236|consen  746 SLDMWSVGVIIYVSLSGTFPFNEDEDINDQIQNAAFMY--PPNPWSEISPEAIDLINNLLQVKMRKRYSVDKSLSHPWLQ  823 (888)
T ss_pred             cccceeeeEEEEEEecccccCCCccchhHHhhcccccc--CCCchhhcCHHHHHHHHHHHHHHHHHhcchHhhccchhhh
Confidence            99999999999999999999954322 22221111111  1123677899999999999999999999999999999999


Q ss_pred             hcc
Q psy3253         240 RHD  242 (251)
Q Consensus       240 ~~~  242 (251)
                      ++.
T Consensus       824 ~yq  826 (888)
T KOG4236|consen  824 DYQ  826 (888)
T ss_pred             cch
Confidence            754

>PHA02882 putative serine/threonine kinase; Provisional

Probab=100.00  E-value=1.2e-32  Score=232.05  Aligned_cols=194  Identities=22%  Similarity=0.270  Sum_probs=151.7

Q ss_pred             CCCCCCccceeeeeEeeCC----eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNT----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~----~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      +.++|+|++++++.+....    ..++++|++. .++.+++. .....++..++.++.|++.||.|||+++++|||||  
T Consensus        78 ~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiK--  153 (294)
T PHA02882         78 HNIDHLGIPKYYGCGSFKRCRMYYRFILLEKLV-ENTKEIFK-RIKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIK--  153 (294)
T ss_pred             ccCCCCCCCcEEEeeeEecCCceEEEEEEehhc-cCHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC--
Confidence            4578999999998765443    4578888884 47777765 33456888899999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-------ccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-------AKRNTVIGTPFWMAP  150 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-------~~~~~~~~~~~y~aP  150 (251)
                                                     |+||+++.++.++|+|||+++......       .......||+.|+||
T Consensus       154 -------------------------------p~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ap  202 (294)
T PHA02882        154 -------------------------------PENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGL  202 (294)
T ss_pred             -------------------------------HHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCH
Confidence                                           888888888899999999997553211       111224589999999


Q ss_pred             cccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh-h--------hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhc
Q psy3253         151 EVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA-I--------FMIPTKPPPSFREPDVWTPEFIDFVSRCLVK  221 (251)
Q Consensus       151 E~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  221 (251)
                      |+..+..++.++||||+||++|++++|..||.+...... .        ..+...   .. ....+++++.+++..|++.
T Consensus       203 e~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~  278 (294)
T PHA02882        203 DAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDFIKRLHEG---KI-KIKNANKFIYDFIECVTKL  278 (294)
T ss_pred             HHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHHHHHhhhh---hh-ccCCCCHHHHHHHHHHHhC
Confidence            999999999999999999999999999999976532211 1        111111   11 2345689999999999999


Q ss_pred             CcCccCCHHHHhc
Q psy3253         222 NPEERATASEMLN  234 (251)
Q Consensus       222 ~p~~Rps~~evl~  234 (251)
                      +|++||+++++++
T Consensus       279 ~~~~rp~~~~l~~  291 (294)
T PHA02882        279 SYEEKPDYDALIK  291 (294)
T ss_pred             CCCCCCCHHHHHH
Confidence            9999999999874

>KOG0608|consensus

Probab=100.00  E-value=4.9e-33  Score=242.77  Aligned_cols=209  Identities=28%  Similarity=0.520  Sum_probs=171.5

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      .+-+++-||+||..|++++.+|.||+|+.||++..++- +-+.|.|..++.++.++.+|+++.|..|+||||||      
T Consensus       684 AEADn~WVVrLyySFQDkdnLYFVMdYIPGGDmMSLLI-rmgIFeE~LARFYIAEltcAiesVHkmGFIHRDiK------  756 (1034)
T KOG0608|consen  684 AEADNEWVVRLYYSFQDKDNLYFVMDYIPGGDMMSLLI-RMGIFEEDLARFYIAELTCAIESVHKMGFIHRDIK------  756 (1034)
T ss_pred             hhcCCcceEEEEEEeccCCceEEEEeccCCccHHHHHH-HhccCHHHHHHHHHHHHHHHHHHHHhccceecccC------
Confidence            45578899999999999999999999999999999986 56789999999999999999999999999999998      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccC---cc-------------c---------c
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT---DT-------------M---------A  136 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~---~~-------------~---------~  136 (251)
                                                 |+||+++.+|++||.|||+|.-+.   +.             .         .
T Consensus       757 ---------------------------PDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~  809 (1034)
T KOG0608|consen  757 ---------------------------PDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADIS  809 (1034)
T ss_pred             ---------------------------ccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhcccc
Confidence                                       999999999999999999995321   00             0         0


Q ss_pred             -----------------cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc-CCCCC
Q psy3253         137 -----------------KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI-PTKPP  198 (251)
Q Consensus       137 -----------------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~-~~~~~  198 (251)
                                       ..-..+||+.|+|||++....++..+|-||.|++||+|+.|++||-...+...-..+ .....
T Consensus       810 ~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq~kv~nw~~~  889 (1034)
T KOG0608|consen  810 KCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQYKVINWRNF  889 (1034)
T ss_pred             ccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCcceeeeeehhhc
Confidence                             001145899999999999999999999999999999999999999655544433222 22233


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcCcCccC---CHHHHhcChhhhhccCCC
Q psy3253         199 PSFREPDVWTPEFIDFVSRCLVKNPEERA---TASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       199 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rp---s~~evl~hp~~~~~~~~~  245 (251)
                      ..+.....+++++.++|.++.- ++++|.   -++||-+||||+..||..
T Consensus       890 l~~~~~~~ls~e~~~li~kLc~-sad~RLGkng~d~vKaHpfFkgIDfss  938 (1034)
T KOG0608|consen  890 LHIPYQGNLSKEALDLIQKLCC-SADSRLGKNGADQVKAHPFFKGIDFSS  938 (1034)
T ss_pred             cccccccccCHHHHHHHHHHhc-ChhhhhcccchhhhhcCccccccchHh
Confidence            3445567889999999998654 467775   567899999999998865

>KOG0695|consensus

Probab=100.00  E-value=1.6e-33  Score=230.46  Aligned_cols=205  Identities=29%  Similarity=0.515  Sum_probs=178.4

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      -+||.+|-++..|+++..++.|.||++||+|.-.++ +...++++.++.+..+|..||.|||++|||+||+|        
T Consensus       308 sn~pflvglhscfqtesrlffvieyv~ggdlmfhmq-rqrklpeeharfys~ei~lal~flh~rgiiyrdlk--------  378 (593)
T KOG0695|consen  308 SNNPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQ-RQRKLPEEHARFYSAEICLALNFLHERGIIYRDLK--------  378 (593)
T ss_pred             cCCCeEEehhhhhcccceEEEEEEEecCcceeeehh-hhhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeecc--------
Confidence            489999999999999999999999999999988776 56789999999999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchh
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD  163 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  163 (251)
                                               .+|++++..|++|+.|+|+++..-.+....++..|||.|.|||++.+..|...+|
T Consensus       379 -------------------------ldnvlldaeghikltdygmcke~l~~gd~tstfcgtpnyiapeilrgeeygfsvd  433 (593)
T KOG0695|consen  379 -------------------------LDNVLLDAEGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVD  433 (593)
T ss_pred             -------------------------ccceEEccCCceeecccchhhcCCCCCcccccccCCCcccchhhhcccccCceeh
Confidence                                     8899999999999999999987666666678889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCC--C-----CCcchh-hhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC------CH
Q psy3253         164 MWSLGITALEMAEGKPPYG--D-----IHPMRA-IFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA------TA  229 (251)
Q Consensus       164 vwslG~~l~~l~~g~~p~~--~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp------s~  229 (251)
                      -|++|+++++|+.|+.||.  +     .+.+.- ...+...   +...|..++-....+++..|++||.+|.      .+
T Consensus       434 wwalgvlmfemmagrspfdivgm~n~d~ntedylfqvilek---qiriprslsvkas~vlkgflnkdp~erlgc~~~~g~  510 (593)
T KOG0695|consen  434 WWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYLFQVILEK---QIRIPRSLSVKASHVLKGFLNKDPKERLGCRPQTGF  510 (593)
T ss_pred             HHHHHHHHHHHHcCCCCcceecCCCcccchhHHHHHHHhhh---cccccceeehhhHHHHHHhhcCCcHHhcCCCcccch
Confidence            9999999999999999993  1     111111 2222222   4445777888899999999999999995      56


Q ss_pred             HHHhcChhhhhccCCC
Q psy3253         230 SEMLNHEFIQRHDTDP  245 (251)
Q Consensus       230 ~evl~hp~~~~~~~~~  245 (251)
                      .++-.|+||+..+|+.
T Consensus       511 ~dik~h~ffr~idwd~  526 (593)
T KOG0695|consen  511 SDIKSHAFFRSIDWDL  526 (593)
T ss_pred             hhhhcchhhhhCCHHH
Confidence            8999999999999986

>KOG1027|consensus

Probab=100.00  E-value=1.4e-33  Score=252.47  Aligned_cols=198  Identities=30%  Similarity=0.459  Sum_probs=151.8

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL---SEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l---~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +||||||+|+.=.+..+.|+..|.|.. +|.+++......+   ..-.....+.|++.||++||+.+|+|||+|      
T Consensus       561 ~H~NviRyyc~E~d~qF~YIalELC~~-sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLk------  633 (903)
T KOG1027|consen  561 EHPNVIRYYCSEQDRQFLYIALELCAC-SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLK------  633 (903)
T ss_pred             CCCceEEEEeeccCCceEEEEehHhhh-hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCC------
Confidence            699999999999999999999999976 9999998531111   113457789999999999999999999999      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCC---C--CCeEecccccccccCccc---cccccccccccccccccc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---E--GHAKLADFGVAGQLTDTM---AKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~---~--~~~kl~dfg~~~~~~~~~---~~~~~~~~~~~y~aPE~~  153 (251)
                                                 |+||++..   +  ..++|+|||++++.....   ....+..||-.|.|||.+
T Consensus       634 ---------------------------PQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L  686 (903)
T KOG1027|consen  634 ---------------------------PQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQL  686 (903)
T ss_pred             ---------------------------CceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHH
Confidence                                       55555543   2  358999999999875432   224556789999999999


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhC-CCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         154 QEIGYDCVADMWSLGITALEMAEG-KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       154 ~~~~~~~~~DvwslG~~l~~l~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      ....-+.++||+|+||++|..++| ..||++.......  +..+...-......-..+..+||.+|+.++|..||++.+|
T Consensus       687 ~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~N--Il~~~~~L~~L~~~~d~eA~dLI~~ml~~dP~~RPsa~~V  764 (903)
T KOG1027|consen  687 REDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQAN--ILTGNYTLVHLEPLPDCEAKDLISRMLNPDPQLRPSATDV  764 (903)
T ss_pred             hccccCcccchhhcCceEEEEecCCccCCCchHHhhhh--hhcCccceeeeccCchHHHHHHHHHhcCCCcccCCCHHHH
Confidence            888888899999999999999885 8999765433222  2222111110011111288999999999999999999999


Q ss_pred             hcChhh
Q psy3253         233 LNHEFI  238 (251)
Q Consensus       233 l~hp~~  238 (251)
                      |.||+|
T Consensus       765 L~HPlF  770 (903)
T KOG1027|consen  765 LNHPLF  770 (903)
T ss_pred             hCCCcc
Confidence            999998

>KOG1006|consensus

Probab=100.00  E-value=3.3e-34  Score=227.51  Aligned_cols=209  Identities=33%  Similarity=0.642  Sum_probs=169.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHH----HhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR----LRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~----~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik   75 (251)
                      |+.-+.||||++||+...++.+++.||+|+ .||..+..    .....++|...-.+..-.+.||.||-+ ..|||||||
T Consensus       117 mks~~cp~IVkfyGa~F~EGdcWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvK  195 (361)
T KOG1006|consen  117 MKSSNCPNIVKFYGALFSEGDCWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVK  195 (361)
T ss_pred             HhhcCCcHHHHHhhhhhcCCceeeeHHHHh-hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCC
Confidence            345578999999999999999999999995 48876653    334678999999999999999999997 589999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc-
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-  154 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-  154 (251)
                                                       |+||+++..|.+||||||.+.+.-+...+. ...|...|+|||.+. 
T Consensus       196 ---------------------------------PSNILldr~G~vKLCDFGIcGqLv~SiAkT-~daGCrpYmAPERi~p  241 (361)
T KOG1006|consen  196 ---------------------------------PSNILLDRHGDVKLCDFGICGQLVDSIAKT-VDAGCRPYMAPERIDP  241 (361)
T ss_pred             ---------------------------------hhheEEecCCCEeeecccchHhHHHHHHhh-hccCCccccChhccCC
Confidence                                             899999999999999999997654433322 234677899999994 


Q ss_pred             -cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhcCCCCCCCCCCCC---CCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         155 -EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFMIPTKPPPSFREPD---VWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       155 -~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                       ...|+.++||||||+++||+.||.+|+..++.. +....+..+.++.+..+.   .++..+..+|..||.+|-+.||..
T Consensus       242 ~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~svfeql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky  321 (361)
T KOG1006|consen  242 SDKGYDIRSDVWSLGITLYEVATGNFPYRKWDSVFEQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKY  321 (361)
T ss_pred             ccCCcchhhhhhhhcceEeeeecCCCCcchHHHHHHHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhcccccCcch
Confidence             345899999999999999999999999877652 223334444444443333   378899999999999999999999


Q ss_pred             HHHhcChhhhhccCC
Q psy3253         230 SEMLNHEFIQRHDTD  244 (251)
Q Consensus       230 ~evl~hp~~~~~~~~  244 (251)
                      ++++.+||++.+..+
T Consensus       322 ~~Lk~~~fyr~y~~~  336 (361)
T KOG1006|consen  322 DDLKKFPFYRMYAVE  336 (361)
T ss_pred             hhhhcCchhhhhhhc
Confidence            999999999877654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.8e-33  Score=264.28  Aligned_cols=220  Identities=14%  Similarity=0.164  Sum_probs=155.0

Q ss_pred             CCCCC-CccceeeeeEe-------eCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccC
Q psy3253           2 QQCDS-PYVVKYYGSYF-------KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRD   73 (251)
Q Consensus         2 ~~l~h-pniv~l~~~~~-------~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~d   73 (251)
                      +.++| +||++++++|.       ....++.+||++ +++|.+++......+++.+++.++.||+.||.|||++||+|||
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrD  105 (793)
T PLN00181         27 KSLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHN  105 (793)
T ss_pred             chhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhCCeeecc
Confidence            56778 79999999883       334678889988 5699999975556799999999999999999999999999999


Q ss_pred             CCCCCCCcccccc-ccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc----------------c
Q psy3253          74 IKAGSGTLVYDRL-DYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM----------------A  136 (251)
Q Consensus        74 ik~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~----------------~  136 (251)
                      |||+||||...-. -+.              .+.. ....--+.++.+|++|||+++......                .
T Consensus       106 lKP~NiLl~~~~~~k~~--------------d~~~-~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~  170 (793)
T PLN00181        106 VRPSCFVMSSFNHVSFI--------------ESAS-CSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPM  170 (793)
T ss_pred             CCchhEEEcccCcEEEe--------------eccc-cCcccccccCcccccccccccccccccccchhhhhccccCCCcc
Confidence            9988888752100 000              0000 000001234568999999986432100                0


Q ss_pred             cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHH
Q psy3253         137 KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVS  216 (251)
Q Consensus       137 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  216 (251)
                      ......+|+.|+|||++.+..++.++|||||||++|||++|.+|+.....  ....+.....+.  ......+...+++.
T Consensus       171 ~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~  246 (793)
T PLN00181        171 KQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSR--TMSSLRHRVLPP--QILLNWPKEASFCL  246 (793)
T ss_pred             cccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHH--HHHHHHHhhcCh--hhhhcCHHHHHHHH
Confidence            01123578889999999998999999999999999999999888753221  111111111111  01112456779999


Q ss_pred             HhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         217 RCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       217 ~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +||..+|.+||+++|+++||||...
T Consensus       247 ~~L~~~P~~Rps~~eil~h~~~~~~  271 (793)
T PLN00181        247 WLLHPEPSCRPSMSELLQSEFINEP  271 (793)
T ss_pred             HhCCCChhhCcChHHHhhchhhhhh
Confidence            9999999999999999999999763

>KOG1151|consensus

Probab=100.00  E-value=1.2e-32  Score=232.14  Aligned_cols=210  Identities=26%  Similarity=0.474  Sum_probs=169.4

Q ss_pred             CCCCCCccceeeeeEe-eCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYF-KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR--KIHRDIKAGS   78 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~-~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~--iiH~dik~~N   78 (251)
                      +.|+||.||++|++|. +.+.+|.|+|||+|.+|..|++ ....+++.+++.|+.||+.||.||.+..  |||-|+|   
T Consensus       522 KeLDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFYLK-QhklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLK---  597 (775)
T KOG1151|consen  522 KELDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLK-QHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLK---  597 (775)
T ss_pred             hccCcceeeeeeeeeeeccccceeeeeecCCCchhHHHH-hhhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccC---
Confidence            5789999999999996 4567999999999999999997 4678999999999999999999999864  9999999   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceec---CCCCCeEecccccccccCcccc-------cccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL---NTEGHAKLADFGVAGQLTDTMA-------KRNTVIGTPFWM  148 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~---~~~~~~kl~dfg~~~~~~~~~~-------~~~~~~~~~~y~  148 (251)
                                                    |.||++   +..|.+||.|||+++.......       ......||-+|.
T Consensus       598 ------------------------------PgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYL  647 (775)
T KOG1151|consen  598 ------------------------------PGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYL  647 (775)
T ss_pred             ------------------------------CccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeec
Confidence                                          555554   3446799999999987754322       234456899999


Q ss_pred             cccccccC----CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhh---hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhc
Q psy3253         149 APEVIQEI----GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAI---FMIPTKPPPSFREPDVWTPEFIDFVSRCLVK  221 (251)
Q Consensus       149 aPE~~~~~----~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  221 (251)
                      +||.+.-.    +.+.++||||+|+++|.++.|+.||+....-..+   ..+.......++..+.++++..+||.+||.+
T Consensus       648 PPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlkAtEVqFP~KPvVsseAkaFIRRCLaY  727 (775)
T KOG1151|consen  648 PPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKATEVQFPPKPVVSSEAKAFIRRCLAY  727 (775)
T ss_pred             CcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHHHHHhhhchhcceeccCCCCCccCHHHHHHHHHHHHh
Confidence            99998543    3678999999999999999999999764332222   2233334445566677899999999999999


Q ss_pred             CcCccCCHHHHhcChhhhhccCCC
Q psy3253         222 NPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       222 ~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      --++|..+.|+-.||||...--.+
T Consensus       728 RKeDR~DV~qLA~dpyllPh~rrs  751 (775)
T KOG1151|consen  728 RKEDRIDVQQLACDPYLLPHIRRS  751 (775)
T ss_pred             hhhhhhhHHHHccCccccchhhhc
Confidence            999999999999999998754433

>KOG1290|consensus

Probab=99.98  E-value=1.1e-32  Score=234.27  Aligned_cols=235  Identities=25%  Similarity=0.325  Sum_probs=160.2

Q ss_pred             CCCccceeeeeEe----eCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCC
Q psy3253           5 DSPYVVKYYGSYF----KNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGS   78 (251)
Q Consensus         5 ~hpniv~l~~~~~----~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~N   78 (251)
                      +-.+||+|++.|.    ++.|+|||+|++ |.+|..+|... ...++...++.|++||+.||.|||. .||||.||||+|
T Consensus       140 ~~~~VV~LlD~FkhsGpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPEN  218 (590)
T KOG1290|consen  140 GKKCVVQLLDHFKHSGPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPEN  218 (590)
T ss_pred             CCceeeeeeccceecCCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcce
Confidence            3468999999996    577999999999 66888888644 4789999999999999999999997 599999999999


Q ss_pred             CCcccccccc---------------------cc-----------------------------------------------
Q psy3253          79 GTLVYDRLDY---------------------CS-----------------------------------------------   90 (251)
Q Consensus        79 i~~~~~~~~~---------------------~~-----------------------------------------------   90 (251)
                      ||+..+..+.                     .+                                               
T Consensus       219 vLl~~~e~~~~~~~~~a~e~~~~~p~~s~s~~~t~~d~~~~~~~~~~s~~~~k~~~kk~~r~~~~~~~~l~~~~~~~~~~  298 (590)
T KOG1290|consen  219 VLLCSTEIDPAKDAREAGEATTSLPKMSPSAVSTRPDALQRMAAEPMSKSKFKKMKKKLKRQAKKLEASLAGLEGIEEEP  298 (590)
T ss_pred             eeeeccccchhhhhhhhccccccCCCCCcccccccccccchhhccccchhhHHHHHHHHhhhhhhhhhhhcccccccccc
Confidence            9998441111                     00                                               


Q ss_pred             ---ccccccc-hhh----hh-------------------h------------------------hhhccc-------Cce
Q psy3253          91 ---IKCNVIT-NQI----YK-------------------T------------------------LFRLKA-------GNI  112 (251)
Q Consensus        91 ---~~~~~~~-~~~----~~-------------------~------------------------~~~~~~-------~ni  112 (251)
                         +.++++. +..    +.                   .                        .+..+|       .|-
T Consensus       299 ~~~s~n~~~~~n~~~~~v~~~~~~~~~~~~~~~~n~~~k~~e~~~~~~~sl~~~~~~~~~t~~~~~~~s~~s~~~~~~n~  378 (590)
T KOG1290|consen  299 NQESYNNEPRINGNESTVERSTLEEDSNENGNRENLPIKSPENFRGNNTSLPESQLRDSATPSDGSLSSPSSPGTIASNP  378 (590)
T ss_pred             cccccccccCCCccccchhhcccccccccccCCccccccCccccccccccccchhcccccccccccccCcCCcccccccc
Confidence               0000000 000    00                   0                        001111       001


Q ss_pred             ec-------CCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCC--
Q psy3253         113 LL-------NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD--  183 (251)
Q Consensus       113 l~-------~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~--  183 (251)
                      ++       ..+-.+||+|||-|+-+....+   ....|..|+|||++.+.+|++.+||||++|++|||+||...|..  
T Consensus       379 ~v~p~~~~~~~di~vKIaDlGNACW~~khFT---~DIQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhs  455 (590)
T KOG1290|consen  379 LVNPDIPLPECDIRVKIADLGNACWVHKHFT---EDIQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHS  455 (590)
T ss_pred             ccCCCCCCCccceeEEEeeccchhhhhhhhc---hhhhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCC
Confidence            11       1112489999999987553322   23468899999999999999999999999999999999998831  


Q ss_pred             -----CCcc--hhhhhcCCCCCCC-----------------------CC-------------CCCCCCHHHHHHHHHhhh
Q psy3253         184 -----IHPM--RAIFMIPTKPPPS-----------------------FR-------------EPDVWTPEFIDFVSRCLV  220 (251)
Q Consensus       184 -----~~~~--~~~~~~~~~~~~~-----------------------~~-------------~~~~~~~~~~~li~~~l~  220 (251)
                           .+..  ..+..+....+..                       +.             .+..-..++.+|+.-||+
T Consensus       456 G~~Y~rDEDHiA~i~ELLG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLe  535 (590)
T KOG1290|consen  456 GENYSRDEDHIALIMELLGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLE  535 (590)
T ss_pred             CCCCCccHHHHHHHHHHHhhccHHHHhcCcchHhhhccccceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence                 1111  1111221111100                       00             011113568999999999


Q ss_pred             cCcCccCCHHHHhcChhhhhccC
Q psy3253         221 KNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       221 ~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                      .+|++|||+.++|+|||+....-
T Consensus       536 f~PeKR~tA~~cl~hPwLn~~~~  558 (590)
T KOG1290|consen  536 FDPEKRPTAAQCLKHPWLNPVAG  558 (590)
T ss_pred             cCccccccHHHHhcCccccCCCC
Confidence            99999999999999999985443

>KOG0200|consensus

Probab=99.98  E-value=6.4e-32  Score=247.14  Aligned_cols=199  Identities=27%  Similarity=0.525  Sum_probs=166.1

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHHhCCc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLHLRRK   69 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH~~~i   69 (251)
                      .||||+.+.|.+.++...++|+||+..|+|.+|++.++               ..++..+...++.||+.|++||++..+
T Consensus       360 ~H~niv~llG~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~  439 (609)
T KOG0200|consen  360 KHPNIVNLLGACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPC  439 (609)
T ss_pred             CCcchhhheeeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCc
Confidence            69999999999999899999999999999999998666               358999999999999999999999999


Q ss_pred             cccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc-cccc--cccc
Q psy3253          70 IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR-NTVI--GTPF  146 (251)
Q Consensus        70 iH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~-~~~~--~~~~  146 (251)
                      +|||+-                                 .+||++..+..+||+|||+++.......-. ....  -...
T Consensus       440 vHRDLA---------------------------------aRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~k  486 (609)
T KOG0200|consen  440 VHRDLA---------------------------------ARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVK  486 (609)
T ss_pred             cchhhh---------------------------------hhhEEecCCCEEEEccccceeccCCCCceEecCCCCcccee
Confidence            999965                                 889999999999999999998544321111 1111  2445


Q ss_pred             cccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCC-cchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcC
Q psy3253         147 WMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIH-PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE  224 (251)
Q Consensus       147 y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  224 (251)
                      |+|||.+....|+.++||||||+++||+++ |..||.+.. .......+..+.  ....|..+++++.++|+.||+.+|+
T Consensus       487 WmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~~l~~G~--r~~~P~~c~~eiY~iM~~CW~~~p~  564 (609)
T KOG0200|consen  487 WMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLEFLKEGN--RMEQPEHCSDEIYDLMKSCWNADPE  564 (609)
T ss_pred             ecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHhcCC--CCCCCCCCCHHHHHHHHHHhCCCcc
Confidence            999999999999999999999999999998 899998754 333333344433  4456888899999999999999999


Q ss_pred             ccCCHHHHhcChhhhh
Q psy3253         225 ERATASEMLNHEFIQR  240 (251)
Q Consensus       225 ~Rps~~evl~hp~~~~  240 (251)
                      +||++.|+.  .+|..
T Consensus       565 ~RP~F~~~~--~~~~~  578 (609)
T KOG0200|consen  565 DRPTFSECV--EFFEK  578 (609)
T ss_pred             cCCCHHHHH--HHHHH
Confidence            999999987  45544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=5.2e-31  Score=254.09  Aligned_cols=193  Identities=19%  Similarity=0.347  Sum_probs=145.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH---LRRKIHRDIKAG   77 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH---~~~iiH~dik~~   77 (251)
                      |++++|||||++++++.++...|+||||+++|+|.++++    .+++..+..++.|++.|+.|||   +.+++|||+|  
T Consensus       737 l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~----~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlk--  810 (968)
T PLN00113        737 MGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR----NLSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLS--  810 (968)
T ss_pred             HhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHh----cCCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCC--
Confidence            467899999999999999999999999999999999986    3889999999999999999999   6699999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                     |+||+++.++..++. ||.......    .....+++.|+|||++.+..
T Consensus       811 -------------------------------p~Nil~~~~~~~~~~-~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~  854 (968)
T PLN00113        811 -------------------------------PEKIIIDGKDEPHLR-LSLPGLLCT----DTKCFISSAYVAPETRETKD  854 (968)
T ss_pred             -------------------------------HHhEEECCCCceEEE-ecccccccc----CCCccccccccCcccccCCC
Confidence                                           777777777766654 554432211    11235678899999999889


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcc--hhh---hhcCCCC------CCCC----CCCCCCCHHHHHHHHHhhhcC
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPM--RAI---FMIPTKP------PPSF----REPDVWTPEFIDFVSRCLVKN  222 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~--~~~---~~~~~~~------~~~~----~~~~~~~~~~~~li~~~l~~~  222 (251)
                      ++.++|||||||++||+++|+.||......  ...   .......      .+..    ........++.+++.+||+.|
T Consensus       855 ~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~~  934 (968)
T PLN00113        855 ITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQNEIVEVMNLALHCTATD  934 (968)
T ss_pred             CCcccchhhHHHHHHHHHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCCCCccHHHHHHHHHHHHhhCcCC
Confidence            999999999999999999999998432111  000   0000000      0000    001111235778999999999


Q ss_pred             cCccCCHHHHhcC
Q psy3253         223 PEERATASEMLNH  235 (251)
Q Consensus       223 p~~Rps~~evl~h  235 (251)
                      |++|||++|+++.
T Consensus       935 P~~RPt~~evl~~  947 (968)
T PLN00113        935 PTARPCANDVLKT  947 (968)
T ss_pred             chhCcCHHHHHHH
Confidence            9999999999864

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.97  E-value=8e-31  Score=237.95  Aligned_cols=194  Identities=23%  Similarity=0.303  Sum_probs=136.0

Q ss_pred             eCCeEEEEEEccCCCCHHHHHHHhCCC-------------------CCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253          18 KNTDLWIVMEYCGAGSVSDIMRLRKKT-------------------LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus        18 ~~~~~~lv~e~~~~gsL~~~~~~~~~~-------------------l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      ++...++|+||+.+++|.+++......                   .....+..++.||+.||.|||++||+|||||   
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLK---  282 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVK---  282 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCC---
Confidence            456799999999999999998643211                   1234566799999999999999999999998   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCC-CCCeEecccccccccCcc-cccccccccccccccccccccC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-EGHAKLADFGVAGQLTDT-MAKRNTVIGTPFWMAPEVIQEI  156 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~-~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~  156 (251)
                                                    |+||+++. ++.+||+|||+++..... ........+++.|+|||.+...
T Consensus       283 ------------------------------P~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~  332 (566)
T PLN03225        283 ------------------------------PQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMS  332 (566)
T ss_pred             ------------------------------HHHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhcc
Confidence                                          77888874 578999999999754322 1223345678899999976322


Q ss_pred             ----------------------CCCcchhHHHHHHHHHHHHhCCCCCCCCCcc-------------hhhhhcCCCCCC--
Q psy3253         157 ----------------------GYDCVADMWSLGITALEMAEGKPPYGDIHPM-------------RAIFMIPTKPPP--  199 (251)
Q Consensus       157 ----------------------~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~-------------~~~~~~~~~~~~--  199 (251)
                                            .+..++||||+||++|+|+++..++......             .....+......  
T Consensus       333 ~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  412 (566)
T PLN03225        333 TQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDL  412 (566)
T ss_pred             CCCCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhh
Confidence                                  2334569999999999999977665321000             000000000000  


Q ss_pred             --CCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         200 --SFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       200 --~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                        .+...........+||.+||+.||++|||++|+|+||||++..+.
T Consensus       413 ~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L~Hpff~~~~~~  459 (566)
T PLN03225        413 RRGFEVLDLDGGAGWELLKSMMRFKGRQRISAKAALAHPYFDREGLL  459 (566)
T ss_pred             hhhhhhccccchHHHHHHHHHccCCcccCCCHHHHhCCcCcCCCCcc
Confidence              011112223456799999999999999999999999999987664

>KOG0670|consensus

Probab=99.97  E-value=1.8e-32  Score=234.66  Aligned_cols=198  Identities=24%  Similarity=0.397  Sum_probs=156.8

Q ss_pred             CccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           7 PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK--KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         7 pniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~--~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      -|+++++..|...+|+|||||-+ ..+|.+.+..-+  -+|....++.++.|+..||+.|-..|++|.|||         
T Consensus       494 ~Hclrl~r~F~hknHLClVFE~L-slNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIK---------  563 (752)
T KOG0670|consen  494 FHCLRLFRHFKHKNHLCLVFEPL-SLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIK---------  563 (752)
T ss_pred             hHHHHHHHHhhhcceeEEEehhh-hchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccC---------
Confidence            37899999999999999999999 569999997443  468899999999999999999999999999999         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCC-CCeEecccccccccCcccccccccccccccccccccccCCCCcchh
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD  163 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  163 (251)
                                              |+||+++.. ..+||||||.|...+....-.  ..-+.+|.|||++.+.+|+..-|
T Consensus       564 ------------------------PDNiLVNE~k~iLKLCDfGSA~~~~eneitP--YLVSRFYRaPEIiLG~~yd~~iD  617 (752)
T KOG0670|consen  564 ------------------------PDNILVNESKNILKLCDFGSASFASENEITP--YLVSRFYRAPEIILGLPYDYPID  617 (752)
T ss_pred             ------------------------ccceEeccCcceeeeccCccccccccccccH--HHHHHhccCcceeecCcccCCcc
Confidence                                    889999765 458999999997766542211  12356799999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcchhhhhc--CCCCCCC------------C-------------------------CCC
Q psy3253         164 MWSLGITALEMAEGKPPYGDIHPMRAIFMI--PTKPPPS------------F-------------------------REP  204 (251)
Q Consensus       164 vwslG~~l~~l~~g~~p~~~~~~~~~~~~~--~~~~~~~------------~-------------------------~~~  204 (251)
                      +||+||+||+|+||+..|.+.+........  ..+..+.            +                         -.|
T Consensus       618 ~WSvgctLYElYtGkIlFpG~TNN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkP  697 (752)
T KOG0670|consen  618 TWSVGCTLYELYTGKILFPGRTNNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKP  697 (752)
T ss_pred             ceeeceeeEEeeccceecCCCCcHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCc
Confidence            999999999999999999766554332211  1110000            0                         000


Q ss_pred             -----------CCCC-------HHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         205 -----------DVWT-------PEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       205 -----------~~~~-------~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                                 +.++       .++.+|+.+||.+||++|.|+.|+|.||||+.
T Consensus       698 tkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~HpFi~~  751 (752)
T KOG0670|consen  698 TKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQALKHPFITE  751 (752)
T ss_pred             chhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHHhcCCcccC
Confidence                       0111       45899999999999999999999999999974

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.97  E-value=8.1e-31  Score=204.42  Aligned_cols=163  Identities=33%  Similarity=0.468  Sum_probs=128.1

Q ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCc
Q psy3253          32 GSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN  111 (251)
Q Consensus        32 gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  111 (251)
                      |||.++++.++..+++.+++.++.|++.||.|||+++      |                                 |+|
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~------k---------------------------------p~N   41 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQA------K---------------------------------SGN   41 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC------C---------------------------------ccc
Confidence            6999999866778999999999999999999999998      6                                 888


Q ss_pred             eecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh-h
Q psy3253         112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA-I  190 (251)
Q Consensus       112 il~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~-~  190 (251)
                      |+++.++.+++  ||.+......     ...+++.|+|||++.+..++.++||||+||++|+|++|..||........ .
T Consensus        42 il~~~~~~~~~--fG~~~~~~~~-----~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~~~~  114 (176)
T smart00750       42 ILLTWDGLLKL--DGSVAFKTPE-----QSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERELSAIL  114 (176)
T ss_pred             EeEcCccceee--ccceEeeccc-----cCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchhcHHH
Confidence            88888888888  9998654332     12578899999999999999999999999999999999999965433221 1


Q ss_pred             hhcCCCCCCC----CCCCCCCCH--HHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         191 FMIPTKPPPS----FREPDVWTP--EFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       191 ~~~~~~~~~~----~~~~~~~~~--~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ..+.......    ...+..++.  ++.+++.+||..+|++||++.|+++|+|+..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~  170 (176)
T smart00750      115 EILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRALF  170 (176)
T ss_pred             HHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHH
Confidence            1111111101    011222333  6999999999999999999999999999864

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0576|consensus

Probab=99.97  E-value=1.5e-31  Score=234.46  Aligned_cols=207  Identities=50%  Similarity=0.955  Sum_probs=183.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+..+|||||.+++.+.....++++||||.||+|.+..+ -.+++++.++...+++.+.||+|||++|-+|||||     
T Consensus        66 ~~dc~h~nivay~gsylr~dklwicMEycgggslQdiy~-~TgplselqiayvcRetl~gl~ylhs~gk~hRdiK-----  139 (829)
T KOG0576|consen   66 LRDCRHPNIVAYFGSYLRRDKLWICMEYCGGGSLQDIYH-VTGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIK-----  139 (829)
T ss_pred             eecCCCcChHHHHhhhhhhcCcEEEEEecCCCcccceee-ecccchhHHHHHHHhhhhccchhhhcCCccccccc-----
Confidence            467899999999999999999999999999999988765 56899999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc---cCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---EIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~  157 (251)
                                                  -.||+++..|.+|+.|||.+.+++....+...+.||+.|+|||+..   ...
T Consensus       140 ----------------------------Ganilltd~gDvklaDfgvsaqitati~KrksfiGtpywmapEvaaverkgg  191 (829)
T KOG0576|consen  140 ----------------------------GANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGG  191 (829)
T ss_pred             ----------------------------ccceeecccCceeecccCchhhhhhhhhhhhcccCCccccchhHHHHHhccc
Confidence                                        8899999999999999999998887777788889999999999883   566


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC--CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      |...+|+|++|+...++-.-++|-.+.-+....+.....  .++.+..+..+++.+.+|++.+|..+|++|||++.+|.|
T Consensus       192 ynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTkS~~qpp~lkDk~kws~~fh~fvK~altknpKkRptaeklL~h  271 (829)
T KOG0576|consen  192 YNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMTKSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRPTAEKLLQH  271 (829)
T ss_pred             ccccccccccccchhhhhhcCCcccccchHHHHHHhhccCCCCCcccCCccchHHHHHHHHHHhcCCCccCCChhhheec
Confidence            888999999999999999999998777777766554433  344566678899999999999999999999999999999


Q ss_pred             hhhhhc
Q psy3253         236 EFIQRH  241 (251)
Q Consensus       236 p~~~~~  241 (251)
                      ||....
T Consensus       272 ~fvs~~  277 (829)
T KOG0576|consen  272 PFVSQT  277 (829)
T ss_pred             eeeccc
Confidence            998653

>KOG4250|consensus

Probab=99.97  E-value=4.1e-31  Score=233.45  Aligned_cols=197  Identities=28%  Similarity=0.496  Sum_probs=148.9

Q ss_pred             CCCCCCCccceeeeeEeeCC------eEEEEEEccCCCCHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT------DLWIVMEYCGAGSVSDIMRL--RKKTLSEDEIATILCDTLKGLEYLHLRRKIHR   72 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~------~~~lv~e~~~~gsL~~~~~~--~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~   72 (251)
                      |++|+|||||+++++=.+..      .-.++||||.||||...++.  +..++++.+.+.++..++.||.|||++||+||
T Consensus        65 lkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHR  144 (732)
T KOG4250|consen   65 LKKLNHPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHR  144 (732)
T ss_pred             HHHcCchhhhhhcccCCccccCcccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceec
Confidence            57899999999999876544      46899999999999999972  33689999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEV  152 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  152 (251)
                      ||||+|||+...                             .+.....||+|||.|+...+.. .....+||..|.+||.
T Consensus       145 DlKP~NIvl~~G-----------------------------edgq~IyKLtDfG~Arel~d~s-~~~S~vGT~~YLhPel  194 (732)
T KOG4250|consen  145 DLKPGNIVLQIG-----------------------------EDGQSIYKLTDFGAARELDDNS-LFTSLVGTEEYLHPEL  194 (732)
T ss_pred             cCCCCcEEEeec-----------------------------CCCceEEeeecccccccCCCCC-eeeeecCchhhcChHH
Confidence            999666655411                             0122237999999999877654 5566789999999999


Q ss_pred             ccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCC-Ccc---hhhhhcCCCCC------------------CCCCCCCCCC-
Q psy3253         153 IQE-IGYDCVADMWSLGITALEMAEGKPPYGDI-HPM---RAIFMIPTKPP------------------PSFREPDVWT-  208 (251)
Q Consensus       153 ~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~-~~~---~~~~~~~~~~~------------------~~~~~~~~~~-  208 (251)
                      ... ..|+..+|.|||||++|+++||..||... .+.   +....+....+                  ..++.+...+ 
T Consensus       195 ~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~pk~~~~~~~~~~tkkp~~v~i~~~~~eNgpv~~s~~lP~p~~Ls~  274 (732)
T KOG4250|consen  195 YERQKKYTATVDLWSFGVTLYECATGELPFIPFGGPKNNKEIMWHIITKKPSGVAIGAQEEENGPVEWSSTLPQPNHLSR  274 (732)
T ss_pred             HhhccCcCceeehhhhhhHHHHHhccCCCCCcCCCccccchhhhhhhccCCCceeEeeecccCCceeeeccCCCcccccH
Confidence            985 77888999999999999999999999322 221   12222221111                  0111122222 


Q ss_pred             ---HHHHHHHHHhhhcCcCccC
Q psy3253         209 ---PEFIDFVSRCLVKNPEERA  227 (251)
Q Consensus       209 ---~~~~~li~~~l~~~p~~Rp  227 (251)
                         ..+-.++..+|..+|++|-
T Consensus       275 ~l~~~~~kwLa~~L~~~~~~~~  296 (732)
T KOG4250|consen  275 GLATRLTKWLASMLEWNPRKRG  296 (732)
T ss_pred             HHHhhhhHHHHHHHhhhHHHhC
Confidence               2356788889999999997

>KOG1025|consensus

Probab=99.97  E-value=5.3e-31  Score=235.51  Aligned_cols=198  Identities=25%  Similarity=0.455  Sum_probs=172.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |.+|+|||++|+++++.... +.||++|+.+|+|.+|++..+..+..+..+.|+.||++|++|||+++++||||-     
T Consensus       752 masldHpnl~RLLgvc~~s~-~qlvtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLa-----  825 (1177)
T KOG1025|consen  752 MASLDHPNLLRLLGVCMLST-LQLVTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLA-----  825 (1177)
T ss_pred             HhcCCCchHHHHhhhcccch-HHHHHHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcchhhhhhh-----
Confidence            57899999999999998776 889999999999999999888999999999999999999999999999999977     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccc--ccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTV--IGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~--~~~~~y~aPE~~~~~~~  158 (251)
                                                  .+|+++.+-.++|+.|||+++............  ...+.|+|-|.+....+
T Consensus       826 ----------------------------aRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~  877 (1177)
T KOG1025|consen  826 ----------------------------ARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKY  877 (1177)
T ss_pred             ----------------------------hhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCC
Confidence                                        677777777789999999998765443332222  22456999999999999


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++||||||+++||++| |..|+.+....++...+..+.  .+..|..++-++.-++.+||..|+..||+++|+..
T Consensus       878 thqSDVWsfGVtiWElmTFGa~Py~gi~~~eI~dlle~ge--RLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~  952 (1177)
T KOG1025|consen  878 THQSDVWSFGVTIWELMTFGAKPYDGIPAEEIPDLLEKGE--RLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAE  952 (1177)
T ss_pred             CchhhhhhhhhhHHHHHhcCCCccCCCCHHHhhHHHhccc--cCCCCCCccHHHHHHHHHHhccCcccCccHHHHHH
Confidence            999999999999999998 999998887777766555554  36778999999999999999999999999999863

>KOG0668|consensus

Probab=99.97  E-value=8.6e-31  Score=204.24  Aligned_cols=208  Identities=24%  Similarity=0.410  Sum_probs=157.2

Q ss_pred             CCCC-CCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           2 QQCD-SPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         2 ~~l~-hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      +.|. ||||++++++..+.  ....||+||.++.+...+.    +.++.-+++.++.+++.||.|+|++||+|||+|   
T Consensus        87 ~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n~Dfk~ly----~tl~d~dIryY~~elLkALdyCHS~GImHRDVK---  159 (338)
T KOG0668|consen   87 QNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNNTDFKQLY----PTLTDYDIRYYIYELLKALDYCHSMGIMHRDVK---  159 (338)
T ss_pred             HhccCCCCeeehhhhhcCccccCchhHhhhhccccHHHHh----hhhchhhHHHHHHHHHHHHhHHHhcCcccccCC---
Confidence            3454 99999999999754  3578999999988876654    578999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCC-CCeEecccccccccCccccccccccccccccccccccc-C
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-I  156 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~  156 (251)
                                                    |.|++++.. -.++|+|+|+|.-.... ...+....+..|--||.+.. .
T Consensus       160 ------------------------------PhNvmIdh~~rkLrlIDWGLAEFYHp~-~eYnVRVASRyfKGPELLVdy~  208 (338)
T KOG0668|consen  160 ------------------------------PHNVMIDHELRKLRLIDWGLAEFYHPG-KEYNVRVASRYFKGPELLVDYQ  208 (338)
T ss_pred             ------------------------------cceeeechhhceeeeeecchHhhcCCC-ceeeeeeehhhcCCchheeech
Confidence                                          667776633 45899999999766544 34455667788999999965 4


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCCCCC-CCC---cchhhhhcCC------------------------CCCC-CC------
Q psy3253         157 GYDCVADMWSLGITALEMAEGKPPYG-DIH---PMRAIFMIPT------------------------KPPP-SF------  201 (251)
Q Consensus       157 ~~~~~~DvwslG~~l~~l~~g~~p~~-~~~---~~~~~~~~~~------------------------~~~~-~~------  201 (251)
                      -|+.+-|+|||||++..|+..+-||. +.+   +...+..+..                        .... .+      
T Consensus       209 ~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~  288 (338)
T KOG0668|consen  209 MYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINS  288 (338)
T ss_pred             hccccHHHHHHHHHHHHHHhccCcccCCCCCHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHHhCCc
Confidence            47788999999999999999888883 222   1111111111                        0000 00      


Q ss_pred             CCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCCC
Q psy3253         202 REPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ  247 (251)
Q Consensus       202 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~~  247 (251)
                      ....-.++++.||+.++|.+|.++|+|++|++.||||.....+.++
T Consensus       289 ~n~hl~~peaiDlldklLrYDHqeRlTakEam~HpyF~~~~~~~~~  334 (338)
T KOG0668|consen  289 ENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAHPYFAPVREAESS  334 (338)
T ss_pred             cccccCChHHHHHHHHHHhhccccccchHHHhcCchHHHHHHHhhc
Confidence            0012246999999999999999999999999999999876554433

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.96  E-value=2.8e-29  Score=223.42  Aligned_cols=201  Identities=20%  Similarity=0.312  Sum_probs=145.2

Q ss_pred             ccceeeeeEee--------CCeEEEEEEccCCCCHHHHHHHhCC-----------------------CCCHHHHHHHHHH
Q psy3253           8 YVVKYYGSYFK--------NTDLWIVMEYCGAGSVSDIMRLRKK-----------------------TLSEDEIATILCD   56 (251)
Q Consensus         8 niv~l~~~~~~--------~~~~~lv~e~~~~gsL~~~~~~~~~-----------------------~l~~~~~~~~~~~   56 (251)
                      ++++++++|..        +...++|+||+.+++|.++++....                       .+++..++.++.|
T Consensus       238 ~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~q  317 (507)
T PLN03224        238 SCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQ  317 (507)
T ss_pred             hhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHH
Confidence            34666666642        3468999999999999999863211                       2356678889999


Q ss_pred             HHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc
Q psy3253          57 TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA  136 (251)
Q Consensus        57 i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~  136 (251)
                      ++.||.|||+.+++|||||                                 |+||+++.++.++|+|||++........
T Consensus       318 l~~aL~~lH~~~ivHrDLK---------------------------------p~NILl~~~~~~kL~DFGla~~~~~~~~  364 (507)
T PLN03224        318 VLTGLRKLHRIGIVHRDIK---------------------------------PENLLVTVDGQVKIIDFGAAVDMCTGIN  364 (507)
T ss_pred             HHHHHHHHHHCCeecCCCc---------------------------------hHhEEECCCCcEEEEeCcCccccccCCc
Confidence            9999999999999999988                                 8888888889999999999965432211


Q ss_pred             -cccccccccccccccccccCCC----------------------CcchhHHHHHHHHHHHHhCCC-CCCCCCcc-----
Q psy3253         137 -KRNTVIGTPFWMAPEVIQEIGY----------------------DCVADMWSLGITALEMAEGKP-PYGDIHPM-----  187 (251)
Q Consensus       137 -~~~~~~~~~~y~aPE~~~~~~~----------------------~~~~DvwslG~~l~~l~~g~~-p~~~~~~~-----  187 (251)
                       ......+++.|+|||.+.....                      ..+.|+||+||++++|++|.. ||.+....     
T Consensus       365 ~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~  444 (507)
T PLN03224        365 FNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELR  444 (507)
T ss_pred             cCccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHh
Confidence             1112234788999998853221                      124699999999999999875 66432110     


Q ss_pred             -----hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCc---CccCCHHHHhcChhhhhc
Q psy3253         188 -----RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP---EERATASEMLNHEFIQRH  241 (251)
Q Consensus       188 -----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p---~~Rps~~evl~hp~~~~~  241 (251)
                           .............+......++...||+.+||..+|   .+|+|++|+|+||||.+.
T Consensus       445 ~~~~~~~~~r~~~~~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~Hp~f~~~  506 (507)
T PLN03224        445 QYDNDLNRWRMYKGQKYDFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSHRFFLPE  506 (507)
T ss_pred             hccchHHHHHhhcccCCCcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhCCCCcCCC
Confidence                 000111112223344456678999999999999876   689999999999999764

>KOG1035|consensus

Probab=99.96  E-value=3.8e-29  Score=231.44  Aligned_cols=185  Identities=32%  Similarity=0.537  Sum_probs=139.2

Q ss_pred             CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchh
Q psy3253          20 TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQ   99 (251)
Q Consensus        20 ~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~   99 (251)
                      ..+|+-||||+..+|.++++.+...-......+++++|++||.|+|++|+||||||                        
T Consensus       669 ~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~~giIHRDLK------------------------  724 (1351)
T KOG1035|consen  669 LILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHDQGIIHRDLK------------------------  724 (1351)
T ss_pred             eEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhCceeeccCC------------------------
Confidence            35899999999877878776332222578899999999999999999999999988                        


Q ss_pred             hhhhhhhcccCceecCCCCCeEecccccccccC------c------------ccccccccccccccccccccccC---CC
Q psy3253         100 IYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT------D------------TMAKRNTVIGTPFWMAPEVIQEI---GY  158 (251)
Q Consensus       100 ~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~------~------------~~~~~~~~~~~~~y~aPE~~~~~---~~  158 (251)
                               |.||+++.+..+||+|||++...-      .            .........||.-|+|||++.+.   +|
T Consensus       725 ---------P~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Y  795 (1351)
T KOG1035|consen  725 ---------PRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKY  795 (1351)
T ss_pred             ---------cceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccc
Confidence                     889999999999999999997611      0            01122345689999999999764   49


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCC-CcchhhhhcCCCCCCCC-CCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDI-HPMRAIFMIPTKPPPSF-REPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      +.|+||||+|++++||+.   ||+.. ........+..+..+.. ..+..--+.-..+|.+|++.||++|||+.|+|++.
T Consensus       796 n~KiDmYSLGIVlFEM~y---PF~TsMERa~iL~~LR~g~iP~~~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~  872 (1351)
T KOG1035|consen  796 NSKIDMYSLGIVLFEMLY---PFGTSMERASILTNLRKGSIPEPADFFDPEHPEEASLIRWLLSHDPSKRPTATELLNSE  872 (1351)
T ss_pred             cchhhhHHHHHHHHHHhc---cCCchHHHHHHHHhcccCCCCCCcccccccchHHHHHHHHHhcCCCccCCCHHHHhhcc
Confidence            999999999999999976   36433 22222333332221111 01222345568999999999999999999999999


Q ss_pred             hhhh
Q psy3253         237 FIQR  240 (251)
Q Consensus       237 ~~~~  240 (251)
                      ||-.
T Consensus       873 llpp  876 (1351)
T KOG1035|consen  873 LLPP  876 (1351)
T ss_pred             CCCc
Confidence            9975

>KOG1024|consensus

Probab=99.96  E-value=1.5e-28  Score=204.54  Aligned_cols=198  Identities=21%  Similarity=0.384  Sum_probs=167.9

Q ss_pred             CCCCCccceeeeeEeeC-CeEEEEEEccCCCCHHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           3 QCDSPYVVKYYGSYFKN-TDLWIVMEYCGAGSVSDIMRLRK-------KTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~-~~~~lv~e~~~~gsL~~~~~~~~-------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      ...|||+..+.++..++ ...+.++.++.-|+|..|++..+       +.++..+...++.|++.|+.|||..|+||.||
T Consensus       343 ~~sH~nll~V~~V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDi  422 (563)
T KOG1024|consen  343 GASHPNLLSVLGVSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDI  422 (563)
T ss_pred             cCcCCCccceeEEEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchh
Confidence            45799999999988654 56788899999999999997443       24666788889999999999999999999997


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccc--ccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN--TVIGTPFWMAPEV  152 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~--~~~~~~~y~aPE~  152 (251)
                      -                                 .+|.++++.-.+||+|=.+++..-......-  ....+..||+||.
T Consensus       423 A---------------------------------aRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEa  469 (563)
T KOG1024|consen  423 A---------------------------------ARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEA  469 (563)
T ss_pred             h---------------------------------hhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHH
Confidence            7                                 7888888888999999998876644333221  1223556999999


Q ss_pred             cccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHH
Q psy3253         153 IQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE  231 (251)
Q Consensus       153 ~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  231 (251)
                      +.+..|+.++|+||||+++|||+| |+.|+.+.++.+...++..+.  .+..|.++|++++.++..||...|++||+++|
T Consensus       470 l~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfEm~~ylkdGy--RlaQP~NCPDeLf~vMacCWallpeeRPsf~Q  547 (563)
T KOG1024|consen  470 LQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFEMEHYLKDGY--RLAQPFNCPDELFTVMACCWALLPEERPSFSQ  547 (563)
T ss_pred             HhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHHHHHHHhccc--eecCCCCCcHHHHHHHHHHHhcCcccCCCHHH
Confidence            999999999999999999999998 999999999999988887775  44568999999999999999999999999999


Q ss_pred             HhcC
Q psy3253         232 MLNH  235 (251)
Q Consensus       232 vl~h  235 (251)
                      +...
T Consensus       548 lv~c  551 (563)
T KOG1024|consen  548 LVIC  551 (563)
T ss_pred             HHHH
Confidence            9754

>KOG0984|consensus

Probab=99.96  E-value=5e-29  Score=191.54  Aligned_cols=165  Identities=38%  Similarity=0.720  Sum_probs=134.2

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHH---HhCCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCDTLKGLEYLHLR-RKIHRDIKAG   77 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~---~~~~~l~~~~~~~~~~~i~~~l~~LH~~-~iiH~dik~~   77 (251)
                      +...+|.+|++||.+......++.||.|+. ||+.|.+   ..++..+|...-+++..++.||.|||++ .+||||+|  
T Consensus       100 r~~~CPf~V~FyGa~~regdvwIcME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvK--  176 (282)
T KOG0984|consen  100 RTVDCPFTVHFYGALFREGDVWICMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVK--  176 (282)
T ss_pred             cCCCCCeEEEeehhhhccccEEEeHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCC--
Confidence            456899999999999888899999999965 9987775   3467899999999999999999999986 79999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc---
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---  154 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---  154 (251)
                                                     |+||+++.+|++|+||||.+....+...+. ...|...|+|||.+.   
T Consensus       177 -------------------------------PsNiLIn~~GqVKiCDFGIsG~L~dSiAkt-~daGCkpYmaPEri~~e~  224 (282)
T KOG0984|consen  177 -------------------------------PSNILINYDGQVKICDFGISGYLVDSIAKT-MDAGCKPYMAPERINPEL  224 (282)
T ss_pred             -------------------------------cceEEEccCCcEEEcccccceeehhhhHHH-HhcCCCccCChhhcCccc
Confidence                                           889999999999999999997665443332 234667799999984   


Q ss_pred             -cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCc-chhhhhcCCCCCCCC
Q psy3253         155 -EIGYDCVADMWSLGITALEMAEGKPPYGDIHP-MRAIFMIPTKPPPSF  201 (251)
Q Consensus       155 -~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~-~~~~~~~~~~~~~~~  201 (251)
                       ...|+.++||||||+++.||.+++.||..+.. -.....+...+++.+
T Consensus       225 n~~gY~vksDvWSLGItmiElA~lr~PY~~w~tpF~qLkqvVeep~P~L  273 (282)
T KOG0984|consen  225 NQKGYSVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQVVEEPSPQL  273 (282)
T ss_pred             CcccceeehhhhhhhhhhhhhhhccccccccCCHHHHHHHHhcCCCCCC
Confidence             34789999999999999999999999966533 333444444444444

>KOG0664|consensus

Probab=99.95  E-value=3.9e-30  Score=205.38  Aligned_cols=205  Identities=25%  Similarity=0.468  Sum_probs=156.9

Q ss_pred             CCCCCccceeeeeEeeCC-----eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           3 QCDSPYVVKYYGSYFKNT-----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~-----~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      .++|.||+...++.+-..     .+|.++|.+. .+|-..+- ....++..-++.+++||+.||+|||+.||.|||||  
T Consensus       108 fFkHdNVLSaLDILQPph~dfFqEiYV~TELmQ-SDLHKIIV-SPQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIK--  183 (449)
T KOG0664|consen  108 SFRHDNVLSLLDILQPANPSFFQELYVLTELMQ-SDLHKIIV-SPQALTPDHVKVFVYQILRGLKYLHTANILHRDIK--  183 (449)
T ss_pred             hhccccHHHHHHhcCCCCchHHHHHHHHHHHHH-hhhhheec-cCCCCCcchhhhhHHHHHhhhHHHhhcchhhccCC--
Confidence            468999999988876332     2678888884 47766554 56789999999999999999999999999999999  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc-ccccccccccccccccc-
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR-NTVIGTPFWMAPEVIQE-  155 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~-~~~~~~~~y~aPE~~~~-  155 (251)
                                                     |.|.+++.+..+||+|||+++.......+. ....-|..|+|||++.+ 
T Consensus       184 -------------------------------PGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGa  232 (449)
T KOG0664|consen  184 -------------------------------PGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGA  232 (449)
T ss_pred             -------------------------------CccEEeccCceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcc
Confidence                                           889999999999999999997654332221 22345778999999976 


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---CCCC----------------------CCCC------CCC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---PTKP----------------------PPSF------REP  204 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---~~~~----------------------~~~~------~~~  204 (251)
                      ..|+.+.||||+||++.|++.++..|+...+......+   ...+                      .+.+      ..+
T Consensus       233 RhYs~AvDiWSVGCIFaELLgRrILFQAq~PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~Ps~~vLYtlsS~  312 (449)
T KOG0664|consen  233 RRYTGAVDIWSVGCIFAELLQRKILFQAAGPIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRAPDTQRLYKIASP  312 (449)
T ss_pred             hhhcCccceehhhHHHHHHHhhhhhhhccChHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCCCCccceeeecCC
Confidence            56899999999999999999999998655443322221   1111                      1111      112


Q ss_pred             CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         205 DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       205 ~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                      ..-..+..+++.++|..||.+|++.++++.|++..+..
T Consensus       313 ~~~~heav~~~~~~l~~d~dkris~~~A~~~~~~~e~R  350 (449)
T KOG0664|consen  313 DDKNHEAVDLLQKLLHFDPDKRISVEEALQHRYLEEGR  350 (449)
T ss_pred             cccchHHHHHHHHHhCCCCcccccHhhhcccccccccc
Confidence            23346678999999999999999999999999987643

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.95  E-value=7.2e-27  Score=185.04  Aligned_cols=169  Identities=44%  Similarity=0.790  Sum_probs=147.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      ++.+.|++++++++++......++++|++.+++|.+++......++...+..++.+++.++.+||+.|++|+||+     
T Consensus        45 ~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~-----  119 (215)
T cd00180          45 LKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLK-----  119 (215)
T ss_pred             HHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-----
Confidence            356789999999999999899999999999899999997443578999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCC-CCCeEecccccccccCcccccccccccccccccccccccC-CC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~  158 (251)
                                                  |.||+++. .+.++|+|||.+..............+...|.+||.+... ..
T Consensus       120 ----------------------------~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~  171 (215)
T cd00180         120 ----------------------------PENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYY  171 (215)
T ss_pred             ----------------------------HhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCccChhHhcccCCC
Confidence                                        77888887 7889999999997654332122334467789999999776 77


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      +.++|+|++|++++++                                  ..+.+++.+|+..+|++||+++++++++
T Consensus       172 ~~~~D~~~lg~~~~~l----------------------------------~~~~~~l~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         172 SEKSDIWSLGVILYEL----------------------------------PELKDLIRKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             CchhhhHHHHHHHHHH----------------------------------HHHHHHHHHHhhCCcccCcCHHHHhhCC
Confidence            8899999999999998                                  7899999999999999999999999875

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0590|consensus

Probab=99.94  E-value=1.5e-27  Score=216.49  Aligned_cols=208  Identities=24%  Similarity=0.354  Sum_probs=165.4

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcc
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV   82 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~   82 (251)
                      .+.|||++.....+++.....-.||||.+ +|+.++. ..+.+...++-.+++|++.|++|+|+.|+.|||+|       
T Consensus       377 ~l~h~~~~e~l~~~~~~~~~~~~mE~~~~-Dlf~~~~-~~~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK-------  447 (601)
T KOG0590|consen  377 SLSHPNIIETLDIVQEIDGILQSMEYCPY-DLFSLVM-SNGKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLK-------  447 (601)
T ss_pred             cccCCchhhhHHHHhhcccchhhhhcccH-HHHHHHh-cccccchhhhhHHHHHHHHHHHHHHhcCceeccCc-------
Confidence            57899998888877766555555999998 9999986 44689999999999999999999999999999988       


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc----ccccccccccccccccccccCCC
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM----AKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                ++|+++..++.+||+|||.+.......    .......|+..|.|||++.+..|
T Consensus       448 --------------------------~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~y  501 (601)
T KOG0590|consen  448 --------------------------LENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEY  501 (601)
T ss_pred             --------------------------cccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCccccccccc
Confidence                                      889999999999999999997554322    23455678889999999999999


Q ss_pred             Cc-chhHHHHHHHHHHHHhCCCCCCCCCcchhh--hhcCCC----CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHH
Q psy3253         159 DC-VADMWSLGITALEMAEGKPPYGDIHPMRAI--FMIPTK----PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE  231 (251)
Q Consensus       159 ~~-~~DvwslG~~l~~l~~g~~p~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  231 (251)
                      .+ ..||||.|+++..|.+|+.||.-.......  ......    ..........++.+.+.+|.+||++||.+|+|+++
T Consensus       502 dpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~  581 (601)
T KOG0590|consen  502 DPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQ  581 (601)
T ss_pred             CcchhhhhhccceEEEEecCCCccccccccccchhhhccccccccccChHHHHHhchhhHHHHHHHHccCChhheecHHH
Confidence            88 599999999999999999999533222111  111010    00111223456788999999999999999999999


Q ss_pred             HhcChhhhhccCCC
Q psy3253         232 MLNHEFIQRHDTDP  245 (251)
Q Consensus       232 vl~hp~~~~~~~~~  245 (251)
                      |++.+||+..+...
T Consensus       582 i~~d~W~~~i~~c~  595 (601)
T KOG0590|consen  582 ILNDEWIRSIECCH  595 (601)
T ss_pred             HhhChHhhhcceEE
Confidence            99999999877654

>KOG3653|consensus

Probab=99.94  E-value=2e-26  Score=195.64  Aligned_cols=195  Identities=24%  Similarity=0.387  Sum_probs=145.2

Q ss_pred             CCCCCccceeeeeEeeCC----eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC---------Cc
Q psy3253           3 QCDSPYVVKYYGSYFKNT----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR---------RK   69 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~----~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~---------~i   69 (251)
                      .++|+||++++++-..+.    .++||++|.+.|+|.+|+.  ....++.+..+++..++.||+|||+.         .|
T Consensus       260 ~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGsL~dyL~--~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~I  337 (534)
T KOG3653|consen  260 GMKHENILQFIGAEKRGTADRMEYWLVTEFHPKGSLCDYLK--ANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPI  337 (534)
T ss_pred             CccchhHHHhhchhccCCccccceeEEeeeccCCcHHHHHH--hccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCcc
Confidence            478999999998876555    7899999999999999996  45799999999999999999999973         48


Q ss_pred             cccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc--ccccccccccccc
Q psy3253          70 IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT--MAKRNTVIGTPFW  147 (251)
Q Consensus        70 iH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~~y  147 (251)
                      +|||||                                 ..||++..++++-|+|||+|..+...  ........||.+|
T Consensus       338 aHRDlk---------------------------------SkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RY  384 (534)
T KOG3653|consen  338 AHRDLK---------------------------------SKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRY  384 (534)
T ss_pred             cccccc---------------------------------ccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhh
Confidence            999988                                 88999999999999999999877532  2233446899999


Q ss_pred             cccccccc-CCCC-----cchhHHHHHHHHHHHHhCCCCCC-CC----------------Ccchhhhh-cCCCCCCCCC-
Q psy3253         148 MAPEVIQE-IGYD-----CVADMWSLGITALEMAEGKPPYG-DI----------------HPMRAIFM-IPTKPPPSFR-  202 (251)
Q Consensus       148 ~aPE~~~~-~~~~-----~~~DvwslG~~l~~l~~g~~p~~-~~----------------~~~~~~~~-~~~~~~~~~~-  202 (251)
                      ||||++.+ .++.     .+.||||+|.++||++++..-+. +.                .-++.... +..+..+.+. 
T Consensus       385 MAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP~~p~  464 (534)
T KOG3653|consen  385 MAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRPKIPD  464 (534)
T ss_pred             cCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHHhhccCCCChh
Confidence            99999965 2233     25899999999999998653321 10                00011111 1111111111 


Q ss_pred             --CCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         203 --EPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       203 --~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                        ....-..-+++.+..||+.||+.|.|+.=+
T Consensus       465 ~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv  496 (534)
T KOG3653|consen  465 AWRKHAGMAVLCETIEECWDHDAEARLTAGCV  496 (534)
T ss_pred             hhhcCccHHHHHHHHHHHcCCchhhhhhhHHH
Confidence              111223558999999999999999998544

>KOG2052|consensus

Probab=99.94  E-value=3.8e-26  Score=192.69  Aligned_cols=194  Identities=26%  Similarity=0.465  Sum_probs=143.9

Q ss_pred             CCCCccceeeeeEeeCC----eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC--------Cccc
Q psy3253           4 CDSPYVVKYYGSYFKNT----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR--------RKIH   71 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~----~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~--------~iiH   71 (251)
                      |+|+||+.++++-..++    .++||++|.+.|||+||+.  ...++....+.++..++.||.+||..        .|.|
T Consensus       262 LRHENILgFIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~--r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAH  339 (513)
T KOG2052|consen  262 LRHENILGFIAADNKDNGSWTQLWLVTDYHEHGSLYDYLN--RNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAH  339 (513)
T ss_pred             hccchhhhhhhccccCCCceEEEEEeeecccCCcHHHHHh--hccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhc
Confidence            69999999998886543    5899999999999999996  47899999999999999999999963        3899


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc----ccccccccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT----MAKRNTVIGTPFW  147 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~~~y  147 (251)
                      ||||                                 ..||++.+++++-|+|+|+|......    ........||.+|
T Consensus       340 RDlK---------------------------------SKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRY  386 (513)
T KOG2052|consen  340 RDLK---------------------------------SKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRY  386 (513)
T ss_pred             cccc---------------------------------cccEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeec
Confidence            9988                                 77999999999999999999765433    1234567899999


Q ss_pred             ccccccccCC----C--CcchhHHHHHHHHHHHHhC----------CCCCCCCCcc----hhhhhcCCCCCCCCCCCCCC
Q psy3253         148 MAPEVIQEIG----Y--DCVADMWSLGITALEMAEG----------KPPYGDIHPM----RAIFMIPTKPPPSFREPDVW  207 (251)
Q Consensus       148 ~aPE~~~~~~----~--~~~~DvwslG~~l~~l~~g----------~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~  207 (251)
                      ||||++...-    +  -..+||||||.++||+.-+          ++||.+..+.    +.+..+.-........+..+
T Consensus       387 MAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ipnrW  466 (513)
T KOG2052|consen  387 MAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIPNRW  466 (513)
T ss_pred             cChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHHHHhcceeecccCCCCCccc
Confidence            9999995421    2  1248999999999998753          3577433221    11111111111111112222


Q ss_pred             -----CHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         208 -----TPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       208 -----~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                           -..+..+|+.||..||..|.|+-.+
T Consensus       467 ~s~~~l~~m~klMkeCW~~Np~aRltALri  496 (513)
T KOG2052|consen  467 KSDPALRVMAKLMKECWYANPAARLTALRI  496 (513)
T ss_pred             ccCHHHHHHHHHHHHhhcCCchhhhHHHHH
Confidence                 1346789999999999999987554

>KOG1152|consensus

Probab=99.94  E-value=2.7e-27  Score=205.11  Aligned_cols=143  Identities=26%  Similarity=0.420  Sum_probs=127.5

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEcc-CCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYC-GAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~-~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .|+||+++.++|++++.+|++||.. +|-+|++++. ....++|.+++.+++|++.|+++||++||+|||||        
T Consensus       627 sH~NIlKlLdfFEddd~yyl~te~hg~gIDLFd~IE-~kp~m~E~eAk~IFkQV~agi~hlh~~~ivhrdik--------  697 (772)
T KOG1152|consen  627 SHENILKLLDFFEDDDYYYLETEVHGEGIDLFDFIE-FKPRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIK--------  697 (772)
T ss_pred             CccchhhhhheeecCCeeEEEecCCCCCcchhhhhh-ccCccchHHHHHHHHHHHhccccccccCceecccc--------
Confidence            4999999999999999999999987 4669999997 67889999999999999999999999999999999        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc-ch
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VA  162 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~-~~  162 (251)
                                               -+|++++.+|-+||+|||.+...-.  ..-...+||..|.|||++.+.+|-. .-
T Consensus       698 -------------------------denvivd~~g~~klidfgsaa~~ks--gpfd~f~gtv~~aapevl~g~~y~gk~q  750 (772)
T KOG1152|consen  698 -------------------------DENVIVDSNGFVKLIDFGSAAYTKS--GPFDVFVGTVDYAAPEVLGGEKYLGKPQ  750 (772)
T ss_pred             -------------------------cccEEEecCCeEEEeeccchhhhcC--CCcceeeeeccccchhhhCCCccCCCcc
Confidence                                     8999999999999999999854322  2334578999999999999988765 48


Q ss_pred             hHHHHHHHHHHHHhCCCCCCC
Q psy3253         163 DMWSLGITALEMAEGKPPYGD  183 (251)
Q Consensus       163 DvwslG~~l~~l~~g~~p~~~  183 (251)
                      |||++|+++|.++....||.+
T Consensus       751 diwalgillytivykenpyyn  771 (772)
T KOG1152|consen  751 DIWALGILLYTIVYKENPYYN  771 (772)
T ss_pred             hhhhhhheeeEEEeccCCCcC
Confidence            999999999999999988854

>KOG1167|consensus

Probab=99.93  E-value=3.3e-26  Score=191.88  Aligned_cols=201  Identities=31%  Similarity=0.492  Sum_probs=146.8

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      -+.||+.+.+.+.++++.++|+||++..+..++..    .++..+++.++..++.||.++|.+|||||||||+       
T Consensus        93 G~~ni~~~~~~~rnnd~v~ivlp~~~H~~f~~l~~----~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKps-------  161 (418)
T KOG1167|consen   93 GSDNIIKLNGCFRNNDQVAIVLPYFEHDRFRDLYR----SLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPS-------  161 (418)
T ss_pred             cchhhhcchhhhccCCeeEEEecccCccCHHHHHh----cCCHHHHHHHHHHHHHHhhhhhccCccccCCCcc-------
Confidence            47799999999999999999999999988888875    6779999999999999999999999999999955       


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCC-CCeEecccccccccC-------------------------------
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLADFGVAGQLT-------------------------------  132 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~-~~~kl~dfg~~~~~~-------------------------------  132 (251)
                                                |++.+.. +.-.|.|||++....                               
T Consensus       162 --------------------------NFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~  215 (418)
T KOG1167|consen  162 --------------------------NFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVAT  215 (418)
T ss_pred             --------------------------ccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCCccccCccccccccc
Confidence                                      5554432 234566666664100                               


Q ss_pred             -------------cccccccccccccccccccccccC-CCCcchhHHHHHHHHHHHHhCCCCCCCCC-cchhhhh-----
Q psy3253         133 -------------DTMAKRNTVIGTPFWMAPEVIQEI-GYDCVADMWSLGITALEMAEGKPPYGDIH-PMRAIFM-----  192 (251)
Q Consensus       133 -------------~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~-~~~~~~~-----  192 (251)
                                   ..........||+.|+|||++.+. ..+++.||||.|+++..++++..||.... .......     
T Consensus       216 ~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tif  295 (418)
T KOG1167|consen  216 ASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIF  295 (418)
T ss_pred             ccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCccccchHHHHHHHh
Confidence                         000112224589999999999764 46889999999999999999999983110 0000000     


Q ss_pred             ----------cCCC------------------------------CC---CCCCCCCCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         193 ----------IPTK------------------------------PP---PSFREPDVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       193 ----------~~~~------------------------------~~---~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                                ....                              ..   .........+..+.+++.+||..||.+|+|+
T Consensus       296 G~~~mrk~A~l~g~~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitA  375 (418)
T KOG1167|consen  296 GSAEMRKCAALPGRILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITA  375 (418)
T ss_pred             ChHHHHHHhhcCCceeeeccccccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHHccCChhhcccH
Confidence                      0000                              00   0001122345578999999999999999999


Q ss_pred             HHHhcChhhhhcc
Q psy3253         230 SEMLNHEFIQRHD  242 (251)
Q Consensus       230 ~evl~hp~~~~~~  242 (251)
                      +|+|+||||...+
T Consensus       376 EeALkHpFF~~~~  388 (418)
T KOG1167|consen  376 EDALKHPFFDEAD  388 (418)
T ss_pred             HHHhcCcCCcchh
Confidence            9999999998543

>KOG1345|consensus

Probab=99.91  E-value=2.7e-25  Score=177.35  Aligned_cols=199  Identities=19%  Similarity=0.303  Sum_probs=146.3

Q ss_pred             CCCccceeee-eEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           5 DSPYVVKYYG-SYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         5 ~hpniv~l~~-~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .|.||+.-|+ .|++.+..+.++||+..|+|..-+.  ..++.|.-.+.++.|++.||.|||+++++|||||.+||||.-
T Consensus        79 ~H~hIi~tY~vaFqt~d~YvF~qE~aP~gdL~snv~--~~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~  156 (378)
T KOG1345|consen   79 PHQHIIDTYEVAFQTSDAYVFVQEFAPRGDLRSNVE--AAGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFD  156 (378)
T ss_pred             cchhhhHHHHHHhhcCceEEEeeccCccchhhhhcC--cccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEec
Confidence            5889998877 6788888999999999999988764  467899999999999999999999999999999955443331


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-----CCC
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-----IGY  158 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~  158 (251)
                                                     .....+|++|||..+..+.......   -+..|.+||....     ...
T Consensus       157 -------------------------------~df~rvKlcDFG~t~k~g~tV~~~~---~~~~y~~pe~~~~~~ne~~~~  202 (378)
T KOG1345|consen  157 -------------------------------ADFYRVKLCDFGLTRKVGTTVKYLE---YVNNYHAPELCDTVVNEKLVV  202 (378)
T ss_pred             -------------------------------CCccEEEeeecccccccCceehhhh---hhcccCCcHHHhhccccceEe
Confidence                                           1223699999999977654322211   2445889987732     335


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcch---hh--hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc---CCHH
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMR---AI--FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER---ATAS  230 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R---ps~~  230 (251)
                      .+.+|+|.||+++|.++||.+||+......   ..  .+.....+........+++.+..+.++-|..+|++|   -+++
T Consensus       203 ~ps~D~WqfGIi~f~cltG~~PWQka~~~d~~Y~~~~~w~~rk~~~~P~~F~~fs~~a~r~Fkk~lt~~~~drcki~~~k  282 (378)
T KOG1345|consen  203 NPSTDIWQFGIIFFYCLTGKFPWQKASIMDKPYWEWEQWLKRKNPALPKKFNPFSEKALRLFKKSLTPRFKDRCKIWTAK  282 (378)
T ss_pred             cccccchheeeeeeeeecCCCcchhhhccCchHHHHHHHhcccCccCchhhcccCHHHHHHHHHhcCCcccccchhHHHH
Confidence            678999999999999999999996432221   11  112222222222345678999999999999999999   4555


Q ss_pred             HHhcChhhh
Q psy3253         231 EMLNHEFIQ  239 (251)
Q Consensus       231 evl~hp~~~  239 (251)
                      ....+.|..
T Consensus       283 k~rk~~w~E  291 (378)
T KOG1345|consen  283 KMRKCLWKE  291 (378)
T ss_pred             HHHHHHHHH
Confidence            566666664

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.91  E-value=4.9e-24  Score=171.39  Aligned_cols=162  Identities=38%  Similarity=0.620  Sum_probs=132.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++|+|++++++++......++++|++.+++|.+++......+++..+..++.+++.++.+||+.+++|+|++      
T Consensus        52 ~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~------  125 (225)
T smart00221       52 KKLKHPNIVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLGIVHRDLK------  125 (225)
T ss_pred             HhCCCCChhhheeeeecCCceEEEEeccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC------
Confidence            46789999999999998889999999999999999997433338999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-cccccccccccccccccc-ccCCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-AKRNTVIGTPFWMAPEVI-QEIGYD  159 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~-~~~~~~  159 (251)
                                                 +.|++++.++.++|+|||.+....... .......++..|++||.+ ....++
T Consensus       126 ---------------------------~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~  178 (225)
T smart00221      126 ---------------------------PENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKGYG  178 (225)
T ss_pred             ---------------------------HHHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcCCCCCC
Confidence                                       888888888999999999987654432 112233466779999998 667788


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCC-CCcc-hhhhhcCCC
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGD-IHPM-RAIFMIPTK  196 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~-~~~~-~~~~~~~~~  196 (251)
                      .++|+|++|++++++++|+.||.. .... .....+..+
T Consensus       179 ~~~Dv~~lG~~~~~l~~g~~pf~~~~~~~~~~~~~~~~~  217 (225)
T smart00221      179 EAVDIWSLGVILYELLWGPEPFSGEGEFTSLLSDVWSFG  217 (225)
T ss_pred             chhhHHHHHHHHHHHHHCCCCccccchhHHHHHHHHhcC
Confidence            899999999999999999999966 3333 333444433

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0603|consensus

Probab=99.88  E-value=1e-23  Score=185.06  Aligned_cols=194  Identities=28%  Similarity=0.478  Sum_probs=168.0

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||.+|+++..|+.+...++++++..||.|...+. ....+++.....+...++.|+.++|+.|++|||+|         
T Consensus        55 ~~~f~v~lhyafqt~~kl~l~ld~~rgg~lft~l~-~~~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k---------  124 (612)
T KOG0603|consen   55 NTPFLVKLHYAFQTDGKLYLILDFLRGGDLFTRLS-KEVMFDELDVAFYLAELALALDHLHKLGIAYRDYK---------  124 (612)
T ss_pred             CCCceeeeeeeeccccchhHhhhhcccchhhhccc-cCCchHHHHHHHHHHHHHHHHhhcchhHHHHhccc---------
Confidence            49999999999999999999999999999987765 45678999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhH
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM  164 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  164 (251)
                                              ++||+++.+|++++.|||+++..-.....    .||..|+|||++.  ....++|-
T Consensus       125 ------------------------~enilld~~Ghi~~tdfglske~v~~~~~----cgt~eymApEI~~--gh~~a~D~  174 (612)
T KOG0603|consen  125 ------------------------LENVLLLLEGHIKLTDFGLSKEAVKEKIA----CGTYEYRAPEIIN--GHLSAADW  174 (612)
T ss_pred             ------------------------ccceeecccCccccCCchhhhHhHhhhhc----ccchhhhhhHhhh--ccCCcccc
Confidence                                    88999999999999999999765433222    6789999999997  46788999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcChhhh
Q psy3253         165 WSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNHEFIQ  239 (251)
Q Consensus       165 wslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~hp~~~  239 (251)
                      ||+|++++++++|..||..    +....+...   .+..|..++..+.+++..++..+|.+|.     -++|+.+|+||+
T Consensus       175 ws~gvl~felltg~~pf~~----~~~~~Il~~---~~~~p~~l~~~a~~~~~~l~~r~p~nrLg~~~~~~~eik~h~f~~  247 (612)
T KOG0603|consen  175 WSFGVLAFELLTGTLPFGG----DTMKRILKA---ELEMPRELSAEARSLFRQLFKRNPENRLGAGPDGVDEIKQHEFFQ  247 (612)
T ss_pred             hhhhhhHHHHhhCCCCCch----HHHHHHhhh---ccCCchhhhHHHHHHHHHHHhhCHHHHhccCcchhHHHhccchhe
Confidence            9999999999999999987    333333332   4445778899999999999999999995     458999999999


Q ss_pred             hccCCC
Q psy3253         240 RHDTDP  245 (251)
Q Consensus       240 ~~~~~~  245 (251)
                      ..+|..
T Consensus       248 ~i~~~~  253 (612)
T KOG0603|consen  248 SIDWNE  253 (612)
T ss_pred             eeeHhh
Confidence            999984

>KOG0195|consensus

Probab=99.87  E-value=2.3e-22  Score=161.02  Aligned_cols=197  Identities=20%  Similarity=0.381  Sum_probs=153.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCC-ccccCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRR-KIHRDIKAGSG   79 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~-iiH~dik~~Ni   79 (251)
                      +-+.||||+.+.+.|+...++.++..||..|||++.++... -..+..++.+++.+++.|+.|||+.. ++-|--     
T Consensus       242 rifshpnilpvlgacnsppnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~-----  316 (448)
T KOG0195|consen  242 RIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFY-----  316 (448)
T ss_pred             eeecCCchhhhhhhccCCCCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhh-----
Confidence            45689999999999999999999999999999999997332 23578899999999999999999964 332210     


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEec--ccccccccCcccccccccccccccccccccccCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA--DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~--dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                 +....++++++.+.+|+  |-.++.       ........+.|++||.++..+
T Consensus       317 ---------------------------lns~hvmidedltarismad~kfsf-------qe~gr~y~pawmspealqrkp  362 (448)
T KOG0195|consen  317 ---------------------------LNSKHVMIDEDLTARISMADTKFSF-------QEVGRAYSPAWMSPEALQRKP  362 (448)
T ss_pred             ---------------------------cccceEEecchhhhheecccceeee-------eccccccCcccCCHHHHhcCc
Confidence                                       22668899988887764  332221       122234567899999998766


Q ss_pred             CC---cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         158 YD---CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       158 ~~---~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      -+   .++|+|||++++||+.|+..||.+..+.+.-..+.- .......|++.+..+..|+.-|++.||.+||.++.++ 
T Consensus       363 ed~n~raadmwsfaillwel~trevpfadlspmecgmkial-eglrv~ippgis~hm~klm~icmnedpgkrpkfdmiv-  440 (448)
T KOG0195|consen  363 EDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKIAL-EGLRVHIPPGISRHMNKLMNICMNEDPGKRPKFDMIV-  440 (448)
T ss_pred             hhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhhhh-ccccccCCCCccHHHHHHHHHHhcCCCCcCCCcceeh-
Confidence            43   369999999999999999999998877765433322 2335556888999999999999999999999999987 


Q ss_pred             Chhhhh
Q psy3253         235 HEFIQR  240 (251)
Q Consensus       235 hp~~~~  240 (251)
                       |.+.+
T Consensus       441 -pilek  445 (448)
T KOG0195|consen  441 -PILEK  445 (448)
T ss_pred             -hhHHH
Confidence             55543

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.86  E-value=1.2e-20  Score=158.26  Aligned_cols=209  Identities=35%  Similarity=0.569  Sum_probs=161.9

Q ss_pred             CCCCCC-ccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           2 QQCDSP-YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK--KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         2 ~~l~hp-niv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~--~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      +.+.|+ +++++++.+......+++++++.+++|.+++....  ..+.......++.|++.++.++|+.|++|||+|   
T Consensus        52 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~k---  128 (384)
T COG0515          52 ASLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIK---  128 (384)
T ss_pred             HHccCCcceeeEEEEEecCCEEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC---
Confidence            356777 79999999987777899999999999997776333  279999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCC-CeEecccccccccCcccc------ccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLADFGVAGQLTDTMA------KRNTVIGTPFWMAPE  151 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~-~~kl~dfg~~~~~~~~~~------~~~~~~~~~~y~aPE  151 (251)
                                                    |+|++++..+ .++++|||.+........      ......++..|++||
T Consensus       129 ------------------------------p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe  178 (384)
T COG0515         129 ------------------------------PENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPE  178 (384)
T ss_pred             ------------------------------HHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHH
Confidence                                          7788888777 699999999975443321      235567899999999


Q ss_pred             cccc---CCCCcchhHHHHHHHHHHHHhCCCCCCCCCc----chhhhhcCCCCCC--CCCCCCCC----CHHHHHHHHHh
Q psy3253         152 VIQE---IGYDCVADMWSLGITALEMAEGKPPYGDIHP----MRAIFMIPTKPPP--SFREPDVW----TPEFIDFVSRC  218 (251)
Q Consensus       152 ~~~~---~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~----~~~~~~~~~~~~~--~~~~~~~~----~~~~~~li~~~  218 (251)
                      .+.+   ...+...|+||+|++++++++|..||.....    ......+......  ........    ...+.+++.++
T Consensus       179 ~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (384)
T COG0515         179 VLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKL  258 (384)
T ss_pred             HhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCccccHHHHHHHHHhcCCcccccccCccccchhhHHHHHHHHHH
Confidence            9987   5788899999999999999999999865543    2222222222211  11111111    25789999999


Q ss_pred             hhcCcCccCCHHHHhcChhhhhccC
Q psy3253         219 LVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       219 l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                      +..+|..|.+..+...+++......
T Consensus       259 ~~~~~~~r~~~~~~~~~~~~~~~~~  283 (384)
T COG0515         259 LAKDPKNRLSSSSDLSHDLLAHLKL  283 (384)
T ss_pred             HhcCchhcCCHHHHhhchHhhCccc
Confidence            9999999999999998877765443

>KOG4158|consensus

Probab=99.86  E-value=2.3e-21  Score=162.41  Aligned_cols=193  Identities=21%  Similarity=0.256  Sum_probs=138.8

Q ss_pred             CCCccceeeeeEee---------------------------CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHH
Q psy3253           5 DSPYVVKYYGSYFK---------------------------NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDT   57 (251)
Q Consensus         5 ~hpniv~l~~~~~~---------------------------~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i   57 (251)
                      .|||||+++.+|.+                           +..+|+||.-+.. +|.+|+-  ....+.....-++.|+
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~--~~~~s~r~~~~~laQl  350 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLW--TRHRSYRTGRVILAQL  350 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHh--cCCCchHHHHHHHHHH
Confidence            79999999998852                           2358999999965 9999985  4567888888999999


Q ss_pred             HHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc---
Q psy3253          58 LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---  134 (251)
Q Consensus        58 ~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~---  134 (251)
                      ++|+.|||++|+.|||+|..||++-+++                             +.-..+.++|||.+---...   
T Consensus       351 LEav~hL~~hgvAhRDlKSDNiL~Eldd-----------------------------D~~P~LVvaDFGCcLAd~~hGlq  401 (598)
T KOG4158|consen  351 LEAVTHLHKHGVAHRDLKSDNILLELDD-----------------------------DEIPQLVVADFGCCLADDNHGLQ  401 (598)
T ss_pred             HHHHHHHHHccchhhcccccceEEEecC-----------------------------CCCcEEEEcccceeeeccccccc
Confidence            9999999999999999994444333221                             11124788999987422110   


Q ss_pred             ---cccccccccccccccccccccCC------CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCC
Q psy3253         135 ---MAKRNTVIGTPFWMAPEVIQEIG------YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPD  205 (251)
Q Consensus       135 ---~~~~~~~~~~~~y~aPE~~~~~~------~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  205 (251)
                         ........|+..-+|||+....+      -..++|.|+.|.+.||+++...||........-..-... ..-...+.
T Consensus       402 lpy~S~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~Yqe-~qLPalp~  480 (598)
T KOG4158|consen  402 LPYESDEVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRTYQE-SQLPALPS  480 (598)
T ss_pred             cccccccccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhhhhh-hhCCCCcc
Confidence               01112234677799999986433      234799999999999999999999764433222111111 11122367


Q ss_pred             CCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         206 VWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       206 ~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      .+++.+++++..+|+.||++|++++
T Consensus       481 ~vpp~~rqlV~~lL~r~pskRvsp~  505 (598)
T KOG4158|consen  481 RVPPVARQLVFDLLKRDPSKRVSPN  505 (598)
T ss_pred             cCChHHHHHHHHHhcCCccccCCcc
Confidence            7899999999999999999998764

>KOG1023|consensus

Probab=99.86  E-value=3.5e-21  Score=168.53  Aligned_cols=200  Identities=26%  Similarity=0.450  Sum_probs=155.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCc-cccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRK-IHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~i-iH~dik~~Ni   79 (251)
                      |+++.|.|+.+++|.+.++...+.|-+||..|+|.+.+......++......++++|+.||.|+|..-+ .|+.++    
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~----   76 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALK----   76 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeec----
Confidence            789999999999999999999999999999999999998667889999999999999999999998765 999977    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCc--ccccccccccccccccccccccC-
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTD--TMAKRNTVIGTPFWMAPEVIQEI-  156 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~-  156 (251)
                                                   ..|.+++....+|+.|||+......  ............-|.|||.+... 
T Consensus        77 -----------------------------s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~  127 (484)
T KOG1023|consen   77 -----------------------------SSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGAL  127 (484)
T ss_pred             -----------------------------cccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccc
Confidence                                         7888889999999999999865431  11111111223459999999652 


Q ss_pred             --C----CCcchhHHHHHHHHHHHHhCCCCCCCC----CcchhhhhcCC-CCC---CCCCCCCCCCHHHHHHHHHhhhcC
Q psy3253         157 --G----YDCVADMWSLGITALEMAEGKPPYGDI----HPMRAIFMIPT-KPP---PSFREPDVWTPEFIDFVSRCLVKN  222 (251)
Q Consensus       157 --~----~~~~~DvwslG~~l~~l~~g~~p~~~~----~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~li~~~l~~~  222 (251)
                        .    .+.+.|+||+|++++++++.+.||...    ++.+.+..+.. ...   +........++++..++..||..+
T Consensus       128 ~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~~e~~~~l~~l~~~cw~e~  207 (484)
T KOG1023|consen  128 SQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPDEIILRVKKGGSNPFRPSIELLNELPPELLLLVARCWEEI  207 (484)
T ss_pred             cccccccccccCCeehHHHHHHHHHhccCccccccccCChHHHHHHHHhcCCCCcCcchhhhhhcchHHHHHHHHhcccC
Confidence              1    466799999999999999999999543    22234444333 111   111111245668999999999999


Q ss_pred             cCccCCHHHHh
Q psy3253         223 PEERATASEML  233 (251)
Q Consensus       223 p~~Rps~~evl  233 (251)
                      |++||+++++-
T Consensus       208 P~~rPs~~~i~  218 (484)
T KOG1023|consen  208 PEKRPSIEQIR  218 (484)
T ss_pred             hhhCccHHHHH
Confidence            99999999873

>KOG1164|consensus

Probab=99.83  E-value=9.3e-20  Score=155.51  Aligned_cols=194  Identities=21%  Similarity=0.222  Sum_probs=148.0

Q ss_pred             CccceeeeeE-eeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           7 PYVVKYYGSY-FKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         7 pniv~l~~~~-~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +++.++++.+ ..+...++||+.+ |.+|.++..... ..|+..++..++.|++.+|+++|+.|++|||||         
T Consensus        80 ~~~~~~~~~G~~~~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiK---------  149 (322)
T KOG1164|consen   80 SHFPKLLDHGRSTEDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIK---------  149 (322)
T ss_pred             CCCCEEEEeccCCCceeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcC---------
Confidence            5888888888 4777899999999 889999886454 789999999999999999999999999999999         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCC-----CCeEeccccccc--ccCcccc-------c-cccccccccccc
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-----GHAKLADFGVAG--QLTDTMA-------K-RNTVIGTPFWMA  149 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~-----~~~kl~dfg~~~--~~~~~~~-------~-~~~~~~~~~y~a  149 (251)
                                              |+|+.+...     ..+.+.|||+++  .......       . .....||.+|++
T Consensus       150 ------------------------p~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S  205 (322)
T KOG1164|consen  150 ------------------------PENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYAS  205 (322)
T ss_pred             ------------------------HHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCcccccc
Confidence                                    555555433     358999999998  4321110       1 233559999999


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCC--CCCCCCHHHHHHHHHhhhcCcCccC
Q psy3253         150 PEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERA  227 (251)
Q Consensus       150 PE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rp  227 (251)
                      +....+...+.+.|+||++.++.++..|..||.....................  .....+.++.++...+-..+...+|
T Consensus       206 ~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P  285 (322)
T KOG1164|consen  206 INVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTDLKSKFEKDPRKLLTDRFGDLKPEEFAKILEYIDSLDYEDKP  285 (322)
T ss_pred             HHHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccccchHHHHHHHhhhhccccccCCChHHHHHHHHHhhccCCcCCC
Confidence            99999999999999999999999999999999665533222221111111111  2334567888888888889999999


Q ss_pred             CHHHHhc
Q psy3253         228 TASEMLN  234 (251)
Q Consensus       228 s~~evl~  234 (251)
                      ..+.+..
T Consensus       286 dy~~~~~  292 (322)
T KOG1164|consen  286 DYEKLAE  292 (322)
T ss_pred             CHHHHHH
Confidence            8877754

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.80  E-value=1.8e-19  Score=148.92  Aligned_cols=161  Identities=24%  Similarity=0.328  Sum_probs=109.4

Q ss_pred             EEEEEEccCCCCHHHHHH---HhCCC---CCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccc
Q psy3253          22 LWIVMEYCGAGSVSDIMR---LRKKT---LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNV   95 (251)
Q Consensus        22 ~~lv~e~~~~gsL~~~~~---~~~~~---l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~   95 (251)
                      .+++|+-+. ++|.+++.   .....   +.....+.+..|++..+++||..|++|+|||                    
T Consensus       114 ~~~l~P~~~-~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi~--------------------  172 (288)
T PF14531_consen  114 RFLLMPRAQ-GDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHGDIK--------------------  172 (288)
T ss_dssp             EEEEEE--S-EEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-S--------------------
T ss_pred             hhhccchhh-hcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceEecccc--------------------
Confidence            478899884 59988864   12222   2334445667899999999999999999988                    


Q ss_pred             cchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc--------CCCCcchhHHHH
Q psy3253          96 ITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE--------IGYDCVADMWSL  167 (251)
Q Consensus        96 ~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~--------~~~~~~~Dvwsl  167 (251)
                                   |+|++++.+|.+.|+||+.....+.....   ...+..|.|||....        ..++.+.|.|++
T Consensus       173 -------------~~nfll~~~G~v~Lg~F~~~~r~g~~~~~---~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~L  236 (288)
T PF14531_consen  173 -------------PENFLLDQDGGVFLGDFSSLVRAGTRYRC---SEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQL  236 (288)
T ss_dssp             -------------GGGEEE-TTS-EEE--GGGEEETTEEEEG---GGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHH
T ss_pred             -------------eeeEEEcCCCCEEEcChHHHeecCceeec---cCCCcccCChhhhhhhcccCcccceeeeccCHHHH
Confidence                         99999999999999999988665432211   233566899997743        247888999999


Q ss_pred             HHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         168 GITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       168 G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      |+++|.++++..||...........       .+.....+|..+.+||..+|+.||++|
T Consensus       237 G~~ly~lWC~~lPf~~~~~~~~~~~-------~f~~C~~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  237 GITLYSLWCGRLPFGLSSPEADPEW-------DFSRCRDMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             HHHHHHHHHSS-STCCCGGGSTSGG-------GGTTSS---HHHHHHHHHHT-SSGGGS
T ss_pred             HHHHHHHHHccCCCCCCCccccccc-------cchhcCCcCHHHHHHHHHHccCCcccC
Confidence            9999999999999976544433321       223344789999999999999999988

>KOG1240|consensus

Probab=99.79  E-value=1.6e-20  Score=173.48  Aligned_cols=195  Identities=19%  Similarity=0.232  Sum_probs=139.8

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcc
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV   82 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~   82 (251)
                      ..+|||++.+..+-.++...|||=+|... +|.|.+. .+.-+...+.+.++.|++.||+.+|..||+|||||       
T Consensus        77 l~~~pn~lPfqk~~~t~kAAylvRqyvkh-nLyDRlS-TRPFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIK-------  147 (1431)
T KOG1240|consen   77 LMKAPNCLPFQKVLVTDKAAYLVRQYVKH-NLYDRLS-TRPFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIK-------  147 (1431)
T ss_pred             hhcCCcccchHHHHHhhHHHHHHHHHHhh-hhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHHcCccccccc-------
Confidence            35789999988887778888999999966 9999886 45667888999999999999999999999999999       


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc-------ccccccccccccccccc
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR-------NTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~-------~~~~~~~~y~aPE~~~~  155 (251)
                                                .+||+++.=.-+.|+||..-+..--+....       .+.....+|.|||.+..
T Consensus       148 --------------------------sENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~  201 (1431)
T KOG1240|consen  148 --------------------------SENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPERFVS  201 (1431)
T ss_pred             --------------------------cceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHhhhc
Confidence                                      556666655557888987765442221111       11223456999999843


Q ss_pred             ----------CC-CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCC-CCCCCCCCCCCCCHHHHHHHHHhhhcC
Q psy3253         156 ----------IG-YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKN  222 (251)
Q Consensus       156 ----------~~-~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~  222 (251)
                                .+ .+++.||||+||+++|+++ |+++|.- .+.-.+..-.. .....+  -.--+..+++++..|++.|
T Consensus       202 ~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~L-SQL~aYr~~~~~~~e~~L--e~Ied~~~Rnlil~Mi~rd  278 (1431)
T KOG1240|consen  202 ALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTL-SQLLAYRSGNADDPEQLL--EKIEDVSLRNLILSMIQRD  278 (1431)
T ss_pred             cccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccH-HHHHhHhccCccCHHHHH--HhCcCccHHHHHHHHHccC
Confidence                      12 6788999999999999987 7888831 11111100000 000000  0111347899999999999


Q ss_pred             cCccCCHHHHhcC
Q psy3253         223 PEERATASEMLNH  235 (251)
Q Consensus       223 p~~Rps~~evl~h  235 (251)
                      |++|.++++.|+.
T Consensus       279 Ps~RlSAedyL~~  291 (1431)
T KOG1240|consen  279 PSKRLSAEDYLQK  291 (1431)
T ss_pred             chhccCHHHHHHh
Confidence            9999999999987

>KOG1033|consensus

Probab=99.78  E-value=5.2e-20  Score=159.11  Aligned_cols=177  Identities=27%  Similarity=0.423  Sum_probs=133.0

Q ss_pred             eEEEEEEccCCCCHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccch
Q psy3253          21 DLWIVMEYCGAGSVSDIMRLR--KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITN   98 (251)
Q Consensus        21 ~~~lv~e~~~~gsL~~~~~~~--~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~   98 (251)
                      ++|+.|++|+-.+|.+++..+  ....+....+.++.|++.|++|   +|.+|+|+|                       
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~~ihrdlk-----------------------  383 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KGLIHRDLK-----------------------  383 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---ccchhhhcc-----------------------
Confidence            589999999999999999622  2456778899999999999999   999999988                       


Q ss_pred             hhhhhhhhcccCceecCCCCCeEecccccccccCccc------ccccccccccccccccccccCCCCcchhHHHHHHHHH
Q psy3253          99 QIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM------AKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITAL  172 (251)
Q Consensus        99 ~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~  172 (251)
                                |.||+...+..+||+|||+........      .......||..|++||.+.+..|+.++||||||++++
T Consensus       384 ----------p~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~  453 (516)
T KOG1033|consen  384 ----------PSNIFFSDDDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILA  453 (516)
T ss_pred             ----------ccccccccchhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHH
Confidence                      556666666789999999997654332      2445567899999999999999999999999999999


Q ss_pred             HHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         173 EMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       173 ~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +++. -...+..   ......+..+..++. .... .+.-..|+++|+.+.|.+||++.+.-.|+|.
T Consensus       454 EL~~~f~T~~er---~~t~~d~r~g~ip~~-~~~d-~p~e~~ll~~lls~~p~~RP~~~~~~~~~~~  515 (516)
T KOG1033|consen  454 ELLIQFSTQFER---IATLTDIRDGIIPPE-FLQD-YPEEYTLLQQLLSPSPEERPSAIEVALHEFL  515 (516)
T ss_pred             HHHHHhccHHHH---HHhhhhhhcCCCChH-Hhhc-CcHHHHHHHHhcCCCcccCchHHHHhhhhhc
Confidence            9987 2222211   111112222211110 1121 3445799999999999999998888877775

>KOG0606|consensus

Probab=99.78  E-value=2.2e-19  Score=165.50  Aligned_cols=154  Identities=32%  Similarity=0.485  Sum_probs=130.5

Q ss_pred             HHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--
Q psy3253          58 LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--  135 (251)
Q Consensus        58 ~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--  135 (251)
                      +.+++|||.-||+|||+|                                 |+|.+++.-|++|+.|||+.+......  
T Consensus       153 vla~Eylh~ygivhrdlk---------------------------------pdnllIT~mGhiKlTDfgLsk~GLms~at  199 (1205)
T KOG0606|consen  153 VLAVEYLHSYGIVHRDLK---------------------------------PDNLLITSMGHIKLTDFGLSKKGLMSLAT  199 (1205)
T ss_pred             hHHhHhhccCCeecCCCC---------------------------------CCcceeeecccccccchhhhhhhhhhccc
Confidence            788999999999999988                                 888899999999999999997542210  


Q ss_pred             -------------ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCC
Q psy3253         136 -------------AKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFR  202 (251)
Q Consensus       136 -------------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~  202 (251)
                                   .......||+.|.|||++....|...+|=|++|+++|+.+-|..||.+.++++.+..+......-.+
T Consensus       200 nl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~visd~i~wpE  279 (1205)
T KOG0606|consen  200 NLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPE  279 (1205)
T ss_pred             hhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhhhhhccccc
Confidence                         0112246899999999999999999999999999999999999999999888888766555433333


Q ss_pred             CCCCCCHHHHHHHHHhhhcCcCcc---CCHHHHhcChhhhhccCC
Q psy3253         203 EPDVWTPEFIDFVSRCLVKNPEER---ATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       203 ~~~~~~~~~~~li~~~l~~~p~~R---ps~~evl~hp~~~~~~~~  244 (251)
                      .....+++..+++.++|+.+|..|   +.+-||.+|+||+..||.
T Consensus       280 ~dea~p~Ea~dli~~LL~qnp~~Rlgt~ga~evk~h~ff~~LDw~  324 (1205)
T KOG0606|consen  280 EDEALPPEAQDLIEQLLRQNPLCRLGTGGALEVKQHGFFQLLDWK  324 (1205)
T ss_pred             cCcCCCHHHHHHHHHHHHhChHhhcccchhhhhhhccceeecccc
Confidence            356679999999999999999999   577889999999999998

>KOG1165|consensus

Probab=99.76  E-value=7.1e-18  Score=138.59  Aligned_cols=193  Identities=20%  Similarity=0.230  Sum_probs=152.4

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      ..+.|.++|.+.+++.+-.||+|++ |.||+++..-.+..|+..++.-++.|++.-++++|++.+|.||||         
T Consensus        82 g~~GIP~vYYFGqeG~~NiLVidLL-GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIK---------  151 (449)
T KOG1165|consen   82 GTEGIPQVYYFGQEGKYNILVIDLL-GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIK---------  151 (449)
T ss_pred             CCCCCCceeeeccccchhhhhhhhh-CcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhcceeecccC---------
Confidence            3578888998889999999999999 899999999889999999999999999999999999999999999         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCC-----CeEecccccccccCccccc-------ccccccccccccccc
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-----HAKLADFGVAGQLTDTMAK-------RNTVIGTPFWMAPEV  152 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~-----~~kl~dfg~~~~~~~~~~~-------~~~~~~~~~y~aPE~  152 (251)
                                              |+|+++..-+     .+.++|||+|+.+.+..++       .....||.+||+-..
T Consensus       152 ------------------------PdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINT  207 (449)
T KOG1165|consen  152 ------------------------PDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINT  207 (449)
T ss_pred             ------------------------ccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeec
Confidence                                    6666664333     3789999999988765443       233568999999999


Q ss_pred             cccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc---hhhhhcCCCCC--CCCCCCCCCCHHHHHHHHHhhhcCcCccC
Q psy3253         153 IQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM---RAIFMIPTKPP--PSFREPDVWTPEFIDFVSRCLVKNPEERA  227 (251)
Q Consensus       153 ~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rp  227 (251)
                      ..+...+...|+=|+|-+++..+-|..||++....   .....|-....  +-.....++|.++..-+...-..+-.+-|
T Consensus       208 HlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeKIGe~Kr~T~i~~Lc~g~P~efa~Yl~yvR~L~F~E~P  287 (449)
T KOG1165|consen  208 HLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEKIGETKRSTPIEVLCEGFPEEFATYLRYVRRLDFFETP  287 (449)
T ss_pred             cccchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHHhccccccCCHHHHHhcCHHHHHHHHHHHHhcCcccCC
Confidence            99999999999999999999999999999765332   22333322211  11112456788888777777777777777


Q ss_pred             CHHH
Q psy3253         228 TASE  231 (251)
Q Consensus       228 s~~e  231 (251)
                      ..+-
T Consensus       288 DYdy  291 (449)
T KOG1165|consen  288 DYDY  291 (449)
T ss_pred             CHHH
Confidence            6544

>KOG1163|consensus

Probab=99.72  E-value=1.5e-17  Score=131.24  Aligned_cols=187  Identities=22%  Similarity=0.283  Sum_probs=144.0

Q ss_pred             ceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccc
Q psy3253          10 VKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYC   89 (251)
Q Consensus        10 v~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~   89 (251)
                      .++..++.++.+-.|||+.+ |+||+++.+-....|+..+++-++-|++.-++|+|.+++||||||              
T Consensus        74 P~i~~y~~e~~ynvlVMdLL-GPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIK--------------  138 (341)
T KOG1163|consen   74 PHIRHYGTEKDYNVLVMDLL-GPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIK--------------  138 (341)
T ss_pred             chhhhhccccccceeeeecc-CccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhhccccccCC--------------
Confidence            44555666778889999999 899999998888999999999999999999999999999999999              


Q ss_pred             cccccccchhhhhhhhhcccCceecCCC---CCeEecccccccccCcccc-------cccccccccccccccccccCCCC
Q psy3253          90 SIKCNVITNQIYKTLFRLKAGNILLNTE---GHAKLADFGVAGQLTDTMA-------KRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~nil~~~~---~~~kl~dfg~~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                         |+|++..-.   ..+.++|||+++.+.+..+       ......||.+|.+-....+...+
T Consensus       139 -------------------PdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqS  199 (341)
T KOG1163|consen  139 -------------------PDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQS  199 (341)
T ss_pred             -------------------ccceeeccccccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhh
Confidence                               777776433   3478999999987754322       22335689999998888888889


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchh---hhhcCCC--CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRA---IFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      ...|+=|+|.++..+--|..||++......   ...+...  ..+......++|.++.-.+..|-..--++-|...
T Consensus       200 RRDDmeSvgYvLmYfnrG~LPWQglka~tk~QKyEkI~EkK~s~~ie~LC~G~P~EF~myl~Y~R~L~F~E~Pdy~  275 (341)
T KOG1163|consen  200 RRDDMESVGYVLMYFNRGSLPWQGLKAATKKQKYEKISEKKMSTPIEVLCKGFPAEFAMYLNYCRGLGFEEKPDYM  275 (341)
T ss_pred             hhhhhhhhcceeeeeecCCCcccccchhhHHHHHHHHHHhhcCCCHHHHhCCCcHHHHHHHHHHhhcCCCCCCcHH
Confidence            999999999999999999999987643221   2222111  0111122567889999999988887777777653

>KOG0590|consensus

Probab=99.70  E-value=2.9e-18  Score=156.12  Aligned_cols=202  Identities=24%  Similarity=0.305  Sum_probs=163.3

Q ss_pred             CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHH-hCCccccCCCCCCCCccc
Q psy3253           6 SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK-TLSEDEIATILCDTLKGLEYLH-LRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         6 hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~-~l~~~~~~~~~~~i~~~l~~LH-~~~iiH~dik~~Ni~~~~   83 (251)
                      |+|++++++...+....+++++|..|+++.+-+..... ..+...+..++.|+..++.|+| ..++.|+|+|        
T Consensus        80 h~n~~~~~~~~~~~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ik--------  151 (601)
T KOG0590|consen   80 HSNTVHMIEPSSSPRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIK--------  151 (601)
T ss_pred             cccccccCCccCCCcccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCC--------
Confidence            99999999999999999999999999999988832333 7788899999999999999999 9999999998        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCC-CeEecccccccccCc-ccc--ccccccc-ccccccccccccCC-
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLADFGVAGQLTD-TMA--KRNTVIG-TPFWMAPEVIQEIG-  157 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~-~~kl~dfg~~~~~~~-~~~--~~~~~~~-~~~y~aPE~~~~~~-  157 (251)
                                               |+|.+++..+ .+++.|||+|..... ...  ......| ++.|.|||...+.. 
T Consensus       152 -------------------------P~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~  206 (601)
T KOG0590|consen  152 -------------------------PSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAY  206 (601)
T ss_pred             -------------------------CccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhh
Confidence                                     7788888888 899999999987665 211  1223346 88999999998854 


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhh--hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAI--FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ..+..|+||.|+++.-+++|..|+.........  .............+..++....+++.+++..+|.+|.+.+++-.+
T Consensus       207 ~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~d  286 (601)
T KOG0590|consen  207 RGPSVDVWSLGIVLSAMLTGELPWDFPSRKDGRYSSWKSNKGRFTQLPWNSISDQAHDLLHKILKENPSNRLSIEELKLD  286 (601)
T ss_pred             cCCCcccccccccccccccCCCCccccccccccceeecccccccccCccccCChhhhhcccccccCCchhcccccccccc
Confidence            456799999999999999999999554333322  111121122334467778899999999999999999999999999


Q ss_pred             hhhhh
Q psy3253         236 EFIQR  240 (251)
Q Consensus       236 p~~~~  240 (251)
                      ||+..
T Consensus       287 ~~~~~  291 (601)
T KOG0590|consen  287 NWLSS  291 (601)
T ss_pred             ccccc
Confidence            99988

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.68  E-value=5.1e-17  Score=139.58  Aligned_cols=109  Identities=18%  Similarity=0.198  Sum_probs=81.8

Q ss_pred             CCCCCCCccce-eeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC-CCCC
Q psy3253           1 MQQCDSPYVVK-YYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI-KAGS   78 (251)
Q Consensus         1 l~~l~hpniv~-l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di-k~~N   78 (251)
                      |++++|+|++. +++.    ...|+||||++|++|.. +.    ...   ...++.+++.||.|||++||+|||| |   
T Consensus        75 L~~L~h~~iv~~l~~~----~~~~LVmE~~~G~~L~~-~~----~~~---~~~~~~~i~~aL~~lH~~gIiHrDL~K---  139 (365)
T PRK09188         75 LKTVRGIGVVPQLLAT----GKDGLVRGWTEGVPLHL-AR----PHG---DPAWFRSAHRALRDLHRAGITHNDLAK---  139 (365)
T ss_pred             HHhccCCCCCcEEEEc----CCcEEEEEccCCCCHHH-hC----ccc---hHHHHHHHHHHHHHHHHCCCeeCCCCC---
Confidence            46789999985 4432    35799999999999963 21    111   1467889999999999999999998 8   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccc--------cccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR--------NTVIGTPFWMAP  150 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~--------~~~~~~~~y~aP  150 (251)
                                                    |+||+++.++.++|+|||+++.........        ....+++.|.||
T Consensus       140 ------------------------------P~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~p  189 (365)
T PRK09188        140 ------------------------------PQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAP  189 (365)
T ss_pred             ------------------------------cceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCc
Confidence                                          888888888899999999998654321110        233467779999


Q ss_pred             cccc
Q psy3253         151 EVIQ  154 (251)
Q Consensus       151 E~~~  154 (251)
                      |.+.
T Consensus       190 e~~~  193 (365)
T PRK09188        190 DALT  193 (365)
T ss_pred             ccCC
Confidence            9884

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.66  E-value=4.8e-16  Score=122.78  Aligned_cols=139  Identities=13%  Similarity=0.111  Sum_probs=98.8

Q ss_pred             CCCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC-CCCC
Q psy3253           1 MQQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI-KAGS   78 (251)
Q Consensus         1 l~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di-k~~N   78 (251)
                      |++| .|+++.+++++    ...+++|||+.|.+|.+...  .      ....++.|++.+|+++|++|++|||| |   
T Consensus        55 L~~L~~~~~vP~ll~~----~~~~lvmeyI~G~~L~~~~~--~------~~~~~~~qi~~~L~~lH~~GIvHrDL~k---  119 (218)
T PRK12274         55 LRQLDGLPRTPRLLHW----DGRHLDRSYLAGAAMYQRPP--R------GDLAYFRAARRLLQQLHRCGVAHNDLAK---  119 (218)
T ss_pred             HHhcCCCCCCCEEEEE----cCEEEEEeeecCccHHhhhh--h------hhHHHHHHHHHHHHHHHHCcCccCCCCC---
Confidence            3567 45889998875    34699999999999865432  1      11357789999999999999999998 6   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-----c--------cccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-----K--------RNTVIGTP  145 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-----~--------~~~~~~~~  145 (251)
                                                    |+||+++.++.++|+|||++........     .        ......++
T Consensus       120 ------------------------------p~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~  169 (218)
T PRK12274        120 ------------------------------EANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCP  169 (218)
T ss_pred             ------------------------------cceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCC
Confidence                                          7888988888999999999975443221     0        11122455


Q ss_pred             ccccccccccC-CCC-cchhHHHHHHHHHHHHhCCCCCCCC
Q psy3253         146 FWMAPEVIQEI-GYD-CVADMWSLGITALEMAEGKPPYGDI  184 (251)
Q Consensus       146 ~y~aPE~~~~~-~~~-~~~DvwslG~~l~~l~~g~~p~~~~  184 (251)
                      .|++|+...-. ..+ ...+-++.|+-+|.++|+..++.+.
T Consensus       170 ~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~  210 (218)
T PRK12274        170 AALTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWED  210 (218)
T ss_pred             CCCCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCcccc
Confidence            56666544321 233 3456678899999999998887543

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.63  E-value=1.1e-16  Score=128.69  Aligned_cols=118  Identities=19%  Similarity=0.263  Sum_probs=88.2

Q ss_pred             CCCCCCccceeeeeEeeC--------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccC
Q psy3253           2 QQCDSPYVVKYYGSYFKN--------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRD   73 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~--------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~d   73 (251)
                      .+++||+|..+.+++...        ...+++|||++|.+|.++..     +++    ....+++.+|..+|+.|++|||
T Consensus        90 ~rL~~~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~-----~~~----~~~~~i~~~l~~lH~~gi~H~D  160 (232)
T PRK10359         90 DRVRSEGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPE-----ISE----DVKAKIKASIESLHQHGMVSGD  160 (232)
T ss_pred             HHHHHCCCCcceEeeeecccccccccCCeEEEEEEECCccHHHhhh-----ccH----HHHHHHHHHHHHHHHcCCccCC
Confidence            457899999998886533        35799999999999988732     333    2456999999999999999999


Q ss_pred             CCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccc
Q psy3253          74 IKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        74 ik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  153 (251)
                      +|                                 |+|++++.++ ++++|||............            ...
T Consensus       161 ik---------------------------------p~Nili~~~g-i~liDfg~~~~~~e~~a~d------------~~v  194 (232)
T PRK10359        161 PH---------------------------------KGNFIVSKNG-LRIIDLSGKRCTAQRKAKD------------RID  194 (232)
T ss_pred             CC---------------------------------hHHEEEeCCC-EEEEECCCcccccchhhHH------------HHH
Confidence            88                                 7888888778 9999999886543221111            122


Q ss_pred             ccCCCCcchhHHHHHHHHHHH
Q psy3253         154 QEIGYDCVADMWSLGITALEM  174 (251)
Q Consensus       154 ~~~~~~~~~DvwslG~~l~~l  174 (251)
                      ....+..++|+|+||+++...
T Consensus       195 ler~y~~~~di~~lg~~~~~~  215 (232)
T PRK10359        195 LERHYGIKNEIKDLGYYLLIY  215 (232)
T ss_pred             HHhHhcccccccceeEeehHH
Confidence            334456789999999987654

>KOG1266|consensus

Probab=99.60  E-value=9.9e-16  Score=126.04  Aligned_cols=198  Identities=19%  Similarity=0.258  Sum_probs=138.0

Q ss_pred             CCCCCccceeeeeEee-----CCeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCC--cccc
Q psy3253           3 QCDSPYVVKYYGSYFK-----NTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRR--KIHR   72 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~-----~~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~--iiH~   72 (251)
                      ++.|.|||+++.++.+     ......+.||+..|+|.++++.   +...+......+|+-||+.||.|||+..  ++|+
T Consensus       123 qlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~Ppiihg  202 (458)
T KOG1266|consen  123 QLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPPIIHG  202 (458)
T ss_pred             HHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCccccC
Confidence            4679999999999864     3458899999999999999962   3456888899999999999999999874  8999


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEeccc--cccccc--Ccccccccccccccccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF--GVAGQL--TDTMAKRNTVIGTPFWM  148 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~df--g~~~~~--~~~~~~~~~~~~~~~y~  148 (251)
                      ++.                                 .+.+++..+|-+|+..-  ......  ...........+.+.|.
T Consensus       203 nlT---------------------------------c~tifiq~ngLIkig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~  249 (458)
T KOG1266|consen  203 NLT---------------------------------CDTIFIQHNGLIKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFS  249 (458)
T ss_pred             Ccc---------------------------------hhheeecCCceEEecccCccccchhhhhhhHhhhhccccCCccc
Confidence            966                                 67777777776776421  111000  00111222334567799


Q ss_pred             cccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC
Q psy3253         149 APEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT  228 (251)
Q Consensus       149 aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  228 (251)
                      +||.=..-+.+.++|||++|....+|..+..--..............+....     --.+.-++++.+|++-.|+.||+
T Consensus       250 a~~sg~~tn~~~a~dIy~fgmcAlemailEiq~tnseS~~~~ee~ia~~i~~-----len~lqr~~i~kcl~~eP~~rp~  324 (458)
T KOG1266|consen  250 APESGTTTNTTGASDIYKFGMCALEMAILEIQSTNSESKVEVEENIANVIIG-----LENGLQRGSITKCLEGEPNGRPD  324 (458)
T ss_pred             cCCcCcccccccchhhhhhhHHHHHHHHheeccCCCcceeehhhhhhhheee-----ccCccccCcCcccccCCCCCCcc
Confidence            9998766677889999999999999988765432222211111111110000     01223367899999999999999


Q ss_pred             HHHHhcChhh
Q psy3253         229 ASEMLNHEFI  238 (251)
Q Consensus       229 ~~evl~hp~~  238 (251)
                      +.+++.||..
T Consensus       325 ar~llfHpll  334 (458)
T KOG1266|consen  325 ARLLLFHPLL  334 (458)
T ss_pred             hhhhhcCcee
Confidence            9999999854

>KOG0606|consensus

Probab=99.59  E-value=2.1e-15  Score=139.63  Aligned_cols=210  Identities=28%  Similarity=0.458  Sum_probs=165.5

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      .||-+++.+..+......+|+++|+.+++|...++ +.+..+...++.++..+..++++||...+.|+|++         
T Consensus       862 ~~P~v~~~~~s~~~rsP~~L~~~~~~~~~~~Skl~-~~~~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~---------  931 (1205)
T KOG0606|consen  862 RSPAVVRSFPSFPCRSPLPLVGHYLNGGDLPSKLH-NSGCLSAEPARSPILERVQSLESLHSSLRKHRDLK---------  931 (1205)
T ss_pred             CCCceecccCCCCCCCCcchhhHHhccCCchhhhh-cCCCcccccccchhHHHHhhhhccccchhhccccc---------
Confidence            45777777666666778999999999999999987 45578888888999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEeccccccccc---------------------------Cccc--
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL---------------------------TDTM--  135 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~---------------------------~~~~--  135 (251)
                                              |.+.+...+++.++.+||.....                           ....  
T Consensus       932 ------------------------p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~  987 (1205)
T KOG0606|consen  932 ------------------------PDSLLIAYDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSAD  987 (1205)
T ss_pred             ------------------------ccchhhcccCCcccCccccccccccccCcCCcccccccCccccccccccccccccc
Confidence                                    55555555555555555422111                           0000  


Q ss_pred             --ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHH
Q psy3253         136 --AKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFID  213 (251)
Q Consensus       136 --~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (251)
                        .......+|+.|.+||...+......+|.|++|+++++.++|.+||...........+.....+-..-+...+.+..+
T Consensus       988 ~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq~~f~ni~~~~~~~p~g~~~~s~~aq~ 1067 (1205)
T KOG0606|consen  988 EARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAETPQQIFENILNRDIPWPEGPEEGSYEAQD 1067 (1205)
T ss_pred             hhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCcchhhhhhccccCCCCCCCCccccChhhhh
Confidence              112334578899999999999999999999999999999999999988888777766666544444446667899999


Q ss_pred             HHHHhhhcCcCccCCHH---HHhcChhhhhccCCCCCC
Q psy3253         214 FVSRCLVKNPEERATAS---EMLNHEFIQRHDTDPSQN  248 (251)
Q Consensus       214 li~~~l~~~p~~Rps~~---evl~hp~~~~~~~~~~~~  248 (251)
                      ++.+.+..+|.+|..+.   ++-.|+||+..+|++-+.
T Consensus      1068 ~~~~ll~~~~~qr~~a~~~~e~k~~~~~~~~~~~~l~~ 1105 (1205)
T KOG0606|consen 1068 LINRLLTEEPTQRLGAKGAAEVKGHPFFQDVDWENLAL 1105 (1205)
T ss_pred             hhhhhhccCchhccCcccccccccCCccCCCCcccccc
Confidence            99999999999998887   999999999999987543

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.58  E-value=2.5e-15  Score=118.63  Aligned_cols=75  Identities=20%  Similarity=0.298  Sum_probs=63.6

Q ss_pred             EEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH-HhCCccccCCCCCCCCccccccccccccccccchhhh
Q psy3253          23 WIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL-HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIY  101 (251)
Q Consensus        23 ~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~L-H~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~  101 (251)
                      ++||||++|++|..... ....++...+..++.|++.+|.++ |+.|++|||||                          
T Consensus        93 ~iVmE~i~g~~l~~~~~-~~~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlk--------------------------  145 (190)
T cd05147          93 VLVMEFIGDDGWAAPRL-KDAPLSESKARELYLQVIQIMRILYQDCRLVHADLS--------------------------  145 (190)
T ss_pred             EEEEEEeCCCCCcchhh-hcCCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCC--------------------------
Confidence            89999998877765533 356899999999999999999999 79999999988                          


Q ss_pred             hhhhhcccCceecCCCCCeEecccccccccC
Q psy3253         102 KTLFRLKAGNILLNTEGHAKLADFGVAGQLT  132 (251)
Q Consensus       102 ~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~  132 (251)
                             |+||+++ ++.++|+|||++....
T Consensus       146 -------P~NIli~-~~~v~LiDFG~a~~~~  168 (190)
T cd05147         146 -------EYNLLYH-DGKLYIIDVSQSVEHD  168 (190)
T ss_pred             -------HHHEEEE-CCcEEEEEccccccCC
Confidence                   7788887 4679999999996543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1166|consensus

Probab=99.56  E-value=5.1e-15  Score=138.61  Aligned_cols=145  Identities=22%  Similarity=0.215  Sum_probs=115.9

Q ss_pred             ccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccc
Q psy3253           8 YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD   87 (251)
Q Consensus         8 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~   87 (251)
                      .|..+...+.-.+..++|+||.+.|||-++++ ....+++-.+..+..|++.-++.||.++||||||||.|.|++.....
T Consensus       755 ~~~~~~~a~~~~~~S~lv~ey~~~Gtlld~~N-~~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~  833 (974)
T KOG1166|consen  755 SIMHISSAHVFQNASVLVSEYSPYGTLLDLIN-TNKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICA  833 (974)
T ss_pred             chHHHHHHHccCCcceeeeeccccccHHHhhc-cCCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCC
Confidence            44555555555666899999999999999997 67889999999999999999999999999999999998888843211


Q ss_pred             cccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCc--ccccccccccccccccccccccCCCCcchhHH
Q psy3253          88 YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTD--TMAKRNTVIGTPFWMAPEVIQEIGYDCVADMW  165 (251)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvw  165 (251)
                                           ..     ....++|+|||.+.....  +..+-.....|-.+-.+|...+.+|+...|.|
T Consensus       834 ---------------------~~-----~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~Dyf  887 (974)
T KOG1166|consen  834 ---------------------DS-----DSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYF  887 (974)
T ss_pred             ---------------------CC-----cccceEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhH
Confidence                                 11     134599999999975542  22223334566678899999999999999999


Q ss_pred             HHHHHHHHHHhCCC
Q psy3253         166 SLGITALEMAEGKP  179 (251)
Q Consensus       166 slG~~l~~l~~g~~  179 (251)
                      .++-+++-|+.|+.
T Consensus       888 GlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  888 GLAATVHVMLFGKY  901 (974)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999864

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.55  E-value=1.2e-14  Score=114.90  Aligned_cols=92  Identities=21%  Similarity=0.217  Sum_probs=70.0

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCCCcc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSGTLV   82 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni~~~   82 (251)
                      +.|+++.....+....  .++||||++|+++..... ....++...+..++.|++.++.++|+ .|++|||||       
T Consensus        76 l~~~~i~~p~~~~~~~--~~lVmE~~~g~~~~~~~l-~~~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlk-------  145 (190)
T cd05145          76 LYEAGVPVPEPILLKK--NVLVMEFIGDDGSPAPRL-KDVPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLS-------  145 (190)
T ss_pred             HHhCCCCCceEEEecC--CEEEEEEecCCCchhhhh-hhccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCC-------
Confidence            4455554333333222  489999998876544322 34568889999999999999999999 999999988       


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccC
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT  132 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~  132 (251)
                                                |+||+++ ++.++|+|||++....
T Consensus       146 --------------------------P~NIll~-~~~~~liDFG~a~~~~  168 (190)
T cd05145         146 --------------------------EYNILYH-DGKPYIIDVSQAVELD  168 (190)
T ss_pred             --------------------------hhhEEEE-CCCEEEEEcccceecC
Confidence                                      7888887 7889999999996544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK10345 hypothetical protein; Provisional

Probab=99.54  E-value=1.6e-14  Score=115.41  Aligned_cols=67  Identities=21%  Similarity=0.306  Sum_probs=54.5

Q ss_pred             CCCccceeeeeEeeCC---e-EEEEEEc--cCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHHhCCccccCCC
Q psy3253           5 DSPYVVKYYGSYFKNT---D-LWIVMEY--CGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL-EYLHLRRKIHRDIK   75 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~---~-~~lv~e~--~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l-~~LH~~~iiH~dik   75 (251)
                      +||||++++|++.++.   . +.+|+||  +.+|+|.+++.+  ..+++.  ..++.+++.++ +|||+++|+|||||
T Consensus        59 ~h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~--~~~~e~--~~~~~~~L~~l~~yLh~~~IvhrDlK  132 (210)
T PRK10345         59 DWSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQ--CRYEED--VAQLRQLLKKLKRYLLDNRIVTMELK  132 (210)
T ss_pred             CCcccceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHc--ccccHh--HHHHHHHHHHHHHHHHHCCEeecCCC
Confidence            7899999999999874   3 3378999  447999999963  346655  35677888777 89999999999999

>KOG0601|consensus

Probab=99.44  E-value=2.1e-13  Score=120.22  Aligned_cols=196  Identities=21%  Similarity=0.213  Sum_probs=153.3

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHH----HHHHHHhCCccccCCCCCCCC
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK----GLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~----~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      .|+|.++.+..+...+..++-+|+| +.+|..+.......++....+..+.+...    ||.++|..+++|-|+|     
T Consensus       176 ~~~~~v~~~~~~e~~~~lfiqtE~~-~~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~k-----  249 (524)
T KOG0601|consen  176 SHENPVRDSPAWEGSGILFIQTELC-GESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLK-----  249 (524)
T ss_pred             ccccccccCcccccCCcceeeeccc-cchhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCCcccccccc-----
Confidence            5899999999999999999999999 46888888744455888899999999999    9999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCC-CCeEecccccccccCcccccccc-----cccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLADFGVAGQLTDTMAKRNT-----VIGTPFWMAPEVIQ  154 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~-~~~kl~dfg~~~~~~~~~~~~~~-----~~~~~~y~aPE~~~  154 (251)
                                                  |.|++..++ ..+++.|||+...++........     ..+...|++||...
T Consensus       250 ----------------------------p~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~  301 (524)
T KOG0601|consen  250 ----------------------------PANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLN  301 (524)
T ss_pred             ----------------------------hhheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhc
Confidence                                        888888888 78899999999877654322211     24666799999985


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCC--CcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDI--HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      + -++...|++++|.++.+..++..+....  +.........    .+.+.....+.++...+..|++.+|-.|++++.+
T Consensus       302 ~-l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~----ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~  376 (524)
T KOG0601|consen  302 G-LATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGY----IPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQIL  376 (524)
T ss_pred             c-ccchHhhhcchhhhhHhhHhhcccccCCCCCCcccccccc----CchhhhcCcchhhhhHHHHhcCcchhhhhHHHHH
Confidence            5 5688999999999999998887665333  2222111111    1222344456777789999999999999999999


Q ss_pred             hcChhhh
Q psy3253         233 LNHEFIQ  239 (251)
Q Consensus       233 l~hp~~~  239 (251)
                      ++|+++.
T Consensus       377 ~~l~~i~  383 (524)
T KOG0601|consen  377 TALNVIH  383 (524)
T ss_pred             hcccccc
Confidence            9998876

>KOG1243|consensus

Probab=99.42  E-value=7.7e-13  Score=118.12  Aligned_cols=136  Identities=18%  Similarity=0.324  Sum_probs=105.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH-hCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH-LRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH-~~~iiH~dik~~Ni   79 (251)
                      |+.++||||+++++.+..++..|+|+|-+  -.|..++...    ....+.--+.||+.||.||| +.+++|++|.    
T Consensus        63 lKtlRHP~Il~yL~t~e~~~~~ylvTErV--~Pl~~~lk~l----~~~~v~~Gl~qIl~AL~FL~~d~~lvHgNv~----  132 (690)
T KOG1243|consen   63 LKTLRHPNILSYLDTTEEEGTLYLVTERV--RPLETVLKEL----GKEEVCLGLFQILAALSFLNDDCNLVHGNVC----  132 (690)
T ss_pred             hhhccCchhhhhhhhhcccCceEEEeecc--ccHHHHHHHh----HHHHHHHHHHHHHHHHHHHhccCCeeeccEe----
Confidence            57899999999999999999999999998  4788787632    26666677899999999998 5789999977    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   .+.++++..|..||++|..+................-.|..|+.+....  
T Consensus       133 -----------------------------~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~s~--  181 (690)
T KOG1243|consen  133 -----------------------------KDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDPSE--  181 (690)
T ss_pred             -----------------------------eeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhcCccc--
Confidence                                         8899999999999999999866543322111111122355666543322  


Q ss_pred             cchhHHHHHHHHHHHHhC
Q psy3253         160 CVADMWSLGITALEMAEG  177 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g  177 (251)
                      ...|.|.|||++++++.|
T Consensus       182 ~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  182 WSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             cchhhhhHHHHHHHHhCc
Confidence            347999999999999998

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.41  E-value=5.1e-13  Score=106.97  Aligned_cols=89  Identities=24%  Similarity=0.291  Sum_probs=74.4

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcc
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV   82 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~   82 (251)
                      .+.|+++.....++......+++|||++|++|.+++....    . ....++.+++.+|.++|+.|++|||++       
T Consensus        55 ~l~~~~i~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~~----~-~~~~i~~~i~~~l~~lH~~~i~H~Dl~-------  122 (211)
T PRK14879         55 RARKAGVNVPAVYFVDPENFIIVMEYIEGEPLKDLINSNG----M-EELELSREIGRLVGKLHSAGIIHGDLT-------  122 (211)
T ss_pred             HHHHCCCCCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhcc----H-HHHHHHHHHHHHHHHHHhCCcccCCCC-------
Confidence            4567788777777767778899999999999999986321    1 788899999999999999999999988       


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccc
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~  130 (251)
                                                |.||+++ ++.++++|||.+..
T Consensus       123 --------------------------p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879        123 --------------------------TSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             --------------------------cccEEEE-CCCEEEEECCcccC
Confidence                                      7788887 67799999998854

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.39  E-value=8.1e-13  Score=120.22  Aligned_cols=87  Identities=20%  Similarity=0.252  Sum_probs=74.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++|++++....++......++||||++|++|.+++.         ....++.+++.+|.+||+.|++|||+|      
T Consensus       391 ~~l~~~~i~~p~~~~~~~~~~~lv~E~~~g~~L~~~l~---------~~~~~~~~i~~~L~~lH~~giiHrDlk------  455 (535)
T PRK09605        391 SEARRAGVPTPVIYDVDPEEKTIVMEYIGGKDLKDVLE---------GNPELVRKVGEIVAKLHKAGIVHGDLT------  455 (535)
T ss_pred             HhhcccCCCeeEEEEEeCCCCEEEEEecCCCcHHHHHH---------HHHHHHHHHHHHHHHHHhCCCccCCCC------
Confidence            46789999888777777777899999999999999875         346789999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEeccccccccc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL  131 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~  131 (251)
                                                 |+||++ .++.++|+|||+++..
T Consensus       456 ---------------------------p~NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        456 ---------------------------TSNFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             ---------------------------hHHEEE-ECCcEEEEeCcccccC
Confidence                                       778888 5677999999999653

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.35  E-value=1.3e-12  Score=103.70  Aligned_cols=85  Identities=21%  Similarity=0.263  Sum_probs=67.8

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      +.|+++....-++......+++|||++|++|.+++.... .       .++.+++.+|.+||+.|++|||++        
T Consensus        54 l~~~~i~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~~-~-------~~~~~i~~~l~~lH~~gi~H~Dl~--------  117 (199)
T TIGR03724        54 ARKAGVNTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEGN-D-------ELLREIGRLVGKLHKAGIVHGDLT--------  117 (199)
T ss_pred             HHHCCCCCCEEEEEECCCCEEEEEEECCccHHHHHhhcH-H-------HHHHHHHHHHHHHHHCCeecCCCC--------
Confidence            455655544444555666799999999999998875221 1       788999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccc
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~  130 (251)
                                               |.||+++ ++.++++|||.+..
T Consensus       118 -------------------------~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724       118 -------------------------TSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             -------------------------cceEEEE-CCcEEEEECCCCcC
Confidence                                     7788887 67899999999854

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>smart00090 RIO RIO-like kinase

Probab=99.33  E-value=1.3e-12  Score=106.67  Aligned_cols=76  Identities=22%  Similarity=0.308  Sum_probs=63.5

Q ss_pred             EEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC-ccccCCCCCCCCccccccccccccccccchhh
Q psy3253          22 LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR-KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQI  100 (251)
Q Consensus        22 ~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~-iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~  100 (251)
                      .++||||++|++|..... ....+...++..++.|++.++.+||+.| ++|||+|                         
T Consensus       123 ~~lV~E~~~g~~L~~~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dik-------------------------  176 (237)
T smart00090      123 NVLVMEFIGGDGLPAPRL-KDVEPEEEEEFELYDDILEEMRKLYKEGELVHGDLS-------------------------  176 (237)
T ss_pred             ceEEEEEecCCccccccc-ccCCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCC-------------------------
Confidence            489999999988876543 2345667778899999999999999999 9999988                         


Q ss_pred             hhhhhhcccCceecCCCCCeEecccccccccC
Q psy3253         101 YKTLFRLKAGNILLNTEGHAKLADFGVAGQLT  132 (251)
Q Consensus       101 ~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~  132 (251)
                              |+||+++ ++.++++|||.+....
T Consensus       177 --------p~NIli~-~~~i~LiDFg~a~~~~  199 (237)
T smart00090      177 --------EYNILVH-DGKVVIIDVSQSVELD  199 (237)
T ss_pred             --------hhhEEEE-CCCEEEEEChhhhccC
Confidence                    7788887 6789999999986443

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.33  E-value=3.8e-12  Score=104.07  Aligned_cols=90  Identities=20%  Similarity=0.193  Sum_probs=68.2

Q ss_pred             CCCCCcc--ceeeeeEeeCC----eEEEEEEccCC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           3 QCDSPYV--VKYYGSYFKNT----DLWIVMEYCGA-GSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         3 ~l~hpni--v~l~~~~~~~~----~~~lv~e~~~~-gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      +++|+++  ++.+++.....    ..++|||+++| .+|.+++.  ...+++..    +.+++.+|.+||++||+|||||
T Consensus        96 ~L~~~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~--~~~l~~~~----~~~i~~~l~~lH~~GI~HrDlk  169 (239)
T PRK01723         96 QLYEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQ--EAPLSEEQ----WQAIGQLIARFHDAGVYHADLN  169 (239)
T ss_pred             HHHhCCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHh--cCCCCHHH----HHHHHHHHHHHHHCCCCCCCCC
Confidence            4566664  66666644322    23599999987 69999885  34555543    5689999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEeccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL  131 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~  131 (251)
                                                       |.||+++.++.++|+|||.+...
T Consensus       170 ---------------------------------p~NILv~~~~~v~LIDfg~~~~~  192 (239)
T PRK01723        170 ---------------------------------AHNILLDPDGKFWLIDFDRGELR  192 (239)
T ss_pred             ---------------------------------chhEEEcCCCCEEEEECCCcccC
Confidence                                             77888877788999999998653

>KOG2137|consensus

Probab=99.26  E-value=3.2e-12  Score=114.62  Aligned_cols=156  Identities=20%  Similarity=0.253  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHh-CCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEeccccccccc
Q psy3253          53 ILCDTLKGLEYLHL-RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL  131 (251)
Q Consensus        53 ~~~~i~~~l~~LH~-~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~  131 (251)
                      =+.+++.|+.|+|. .++||++|.                                 |++|+++.++.+||+.|+.+...
T Consensus       104 nl~~v~dgl~flh~sAk~VH~ni~---------------------------------p~~i~~na~~~wkl~Gf~f~v~~  150 (700)
T KOG2137|consen  104 NLGNVADGLAFLHRSAKVVHGNIQ---------------------------------PEAIVVNANGDWKLAGFSFCVNA  150 (700)
T ss_pred             hhhcccchhhhhccCcceeecccc---------------------------------hhheeeccCcceeeccchhhhcc
Confidence            35567799999997 589999977                                 99999999999999999998654


Q ss_pred             Cccccc----c-----cccccccccccccccccCCCCcchhHHHHHHHHHHHH-hCCCCCCCCCcchh-hhhcCCCCCCC
Q psy3253         132 TDTMAK----R-----NTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA-EGKPPYGDIHPMRA-IFMIPTKPPPS  200 (251)
Q Consensus       132 ~~~~~~----~-----~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~-~g~~p~~~~~~~~~-~~~~~~~~~~~  200 (251)
                      ......    +     ........|.|||++.+...+.++|++|+|+++|.+. .|+..+........ ...........
T Consensus       151 ~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~~~~~~  230 (700)
T KOG2137|consen  151 NGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLGTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNLLNAGA  230 (700)
T ss_pred             CCCCccccccCCCCCChhhccCcccccchhhccccccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhccccccc
Confidence            431110    0     0111234599999999888899999999999999998 56665533211111 11111222223


Q ss_pred             CCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         201 FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       201 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      ......+++++++=+.+++..++..||++.+++..|||++.
T Consensus       231 ~~~s~~~p~el~~~l~k~l~~~~~~rp~~~~l~~~~ff~D~  271 (700)
T KOG2137|consen  231 FGYSNNLPSELRESLKKLLNGDSAVRPTLDLLLSIPFFSDP  271 (700)
T ss_pred             ccccccCcHHHHHHHHHHhcCCcccCcchhhhhcccccCCc
Confidence            33457789999999999999999999999999999999863

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.17  E-value=5.4e-11  Score=94.50  Aligned_cols=72  Identities=18%  Similarity=0.195  Sum_probs=60.7

Q ss_pred             eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhh
Q psy3253          21 DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQI  100 (251)
Q Consensus        21 ~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~  100 (251)
                      ..++||||++|++|.....       ......++.+++.++.++|+.|++|||||                         
T Consensus       105 ~~~lv~e~~~g~~L~~~~~-------~~~~~~~~~~i~~~l~~lh~~gi~H~Dl~-------------------------  152 (198)
T cd05144         105 RHAVVMEYIDGVELYRVRV-------LEDPEEVLDEILEEIVKAYKHGIIHGDLS-------------------------  152 (198)
T ss_pred             CceEEEEEeCCcchhhccc-------cccHHHHHHHHHHHHHHHHHCCCCcCCCC-------------------------
Confidence            4589999999999876532       13456788899999999999999999988                         


Q ss_pred             hhhhhhcccCceecCCCCCeEecccccccccC
Q psy3253         101 YKTLFRLKAGNILLNTEGHAKLADFGVAGQLT  132 (251)
Q Consensus       101 ~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~  132 (251)
                              |.||+++.++.++|+|||.+....
T Consensus       153 --------p~Nill~~~~~~~liDfg~~~~~~  176 (198)
T cd05144         153 --------EFNILVDDDEKIYIIDWPQMVSTD  176 (198)
T ss_pred             --------cccEEEcCCCcEEEEECCccccCC
Confidence                    888999888999999999996544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0601|consensus

Probab=99.02  E-value=1.8e-10  Score=101.90  Aligned_cols=193  Identities=21%  Similarity=0.253  Sum_probs=141.7

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      -|.++++++..|....+.|+-.|||+++++..... ....+++...+++..|++.++.++|+..++|+|+|         
T Consensus       324 ~~~~~~g~~~~W~~~r~~~ip~e~~~~~s~~l~~~-~~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~---------  393 (524)
T KOG0601|consen  324 SHLPSVGKNSSWSQLRQGYIPLEFCEGGSSSLRSV-TSQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVK---------  393 (524)
T ss_pred             cccccCCCCCCccccccccCchhhhcCcchhhhhH-HHHhcCcchhhhhHHHHHhccccccchhhhccccc---------
Confidence            48889999999988888899999999998877663 45678999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCC-CCeEecccccccccCccccccccccc-cccc-ccccccccCCCCcc
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLADFGVAGQLTDTMAKRNTVIG-TPFW-MAPEVIQEIGYDCV  161 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~-~~~kl~dfg~~~~~~~~~~~~~~~~~-~~~y-~aPE~~~~~~~~~~  161 (251)
                                              |+||++..+ +..+++|||......   ........ +..| .++......++..+
T Consensus       394 ------------------------psni~i~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~r~~p~~~~~~e~~~~~~~  446 (524)
T KOG0601|consen  394 ------------------------PSNILISNDGFFSKLGDFGCWTRLA---FSSGVFHHIDRLYPIAEILLEDYPHLSK  446 (524)
T ss_pred             ------------------------ccceeeccchhhhhccccccccccc---eecccccccccccccchhhccccccccc
Confidence                                    666666654 556888888875421   11111122 2334 35555566778889


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      .|++|||.-+.+.+++.+.-........   +..+..   ........++..+.+.+...++..|+.+.++..|+-|.+
T Consensus       447 ~~~~sl~~~~~e~~~~~~ls~~~~~~~~---i~~~~~---p~~~~~~~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~~~  519 (524)
T KOG0601|consen  447 ADIFSLGLSVDEAITGSPLSESGVQSLT---IRSGDT---PNLPGLKLQLQVLLKVMINPDRKRRPSAVELSLHSEFYR  519 (524)
T ss_pred             cccccccccccccccCcccCccccccee---eecccc---cCCCchHHhhhhhhhhhcCCccccchhhhhhcccchhhh
Confidence            9999999999999998765433332222   222211   112333477888999999999999999999988876644

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.00  E-value=3.1e-10  Score=85.09  Aligned_cols=82  Identities=26%  Similarity=0.285  Sum_probs=68.7

Q ss_pred             CccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCCCCCCccc
Q psy3253           7 PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR---RKIHRDIKAGSGTLVY   83 (251)
Q Consensus         7 pniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~---~iiH~dik~~Ni~~~~   83 (251)
                      .++.++++++...+..+++|||+.++++..+        +......++.+++.++..+|..   +++|+|++        
T Consensus        53 ~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~~--------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~--------  116 (155)
T cd05120          53 LPVPKVLASGESDGWSYLLMEWIEGETLDEV--------SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLH--------  116 (155)
T ss_pred             CCCCeEEEEcCCCCccEEEEEecCCeecccC--------CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCC--------
Confidence            5788888888777889999999988777543        5566677889999999999985   69999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEeccccccc
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAG  129 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~  129 (251)
                                               |.|+++++.+.++++|||.+.
T Consensus       117 -------------------------~~Nil~~~~~~~~l~Df~~~~  137 (155)
T cd05120         117 -------------------------PGNILVDDGKILGIIDWEYAG  137 (155)
T ss_pred             -------------------------cceEEEECCcEEEEEeccccc
Confidence                                     778888777889999999884

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.97  E-value=1.3e-09  Score=85.52  Aligned_cols=75  Identities=20%  Similarity=0.296  Sum_probs=57.6

Q ss_pred             eEEEEEEccCCCCHHH-HHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCCCccccccccccccccccch
Q psy3253          21 DLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITN   98 (251)
Q Consensus        21 ~~~lv~e~~~~gsL~~-~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~   98 (251)
                      ..+++|||+.++++.. .+..  .... ..+..++.+++.++.++|. .|++|||+|                       
T Consensus        89 ~~~lv~e~~~g~~~~~~~l~~--~~~~-~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~-----------------------  142 (187)
T cd05119          89 RHVLVMEFIGGDGIPAPRLKD--VRLL-EDPEELYDQILELMRKLYREAGLVHGDLS-----------------------  142 (187)
T ss_pred             CCEEEEEEeCCCCccChhhhh--hhhc-ccHHHHHHHHHHHHHHHhhccCcCcCCCC-----------------------
Confidence            3589999998854321 1110  1111 6778899999999999999 999999988                       


Q ss_pred             hhhhhhhhcccCceecCCCCCeEecccccccccC
Q psy3253          99 QIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT  132 (251)
Q Consensus        99 ~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~  132 (251)
                                |+||+++ ++.++++|||.+....
T Consensus       143 ----------p~Nili~-~~~~~liDfg~a~~~~  165 (187)
T cd05119         143 ----------EYNILVD-DGKVYIIDVPQAVEID  165 (187)
T ss_pred             ----------hhhEEEE-CCcEEEEECccccccc
Confidence                      8888888 7889999999996544

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.85  E-value=7.5e-09  Score=81.62  Aligned_cols=77  Identities=19%  Similarity=0.329  Sum_probs=58.4

Q ss_pred             eEEEEEEccCCCCHHH-HHHHhCCCCCHHHHHHHHHHHHHHHHHH-HhCCccccCCCCCCCCccccccccccccccccch
Q psy3253          21 DLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLKGLEYL-HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITN   98 (251)
Q Consensus        21 ~~~lv~e~~~~gsL~~-~~~~~~~~l~~~~~~~~~~~i~~~l~~L-H~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~   98 (251)
                      .-++||||++++.+.. .+  ....+++.+...+..+++.++..| |+.|++|||++                       
T Consensus        98 ~~~lvME~Ig~~~~~~~~L--kd~~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDLs-----------------------  152 (197)
T cd05146          98 KHVLVMSFIGDDQVPAPKL--KDAKLNDEEMKNAYYQVLSMMKQLYKECNLVHADLS-----------------------  152 (197)
T ss_pred             CCEEEEEEcCCCCccchhh--hccccCHHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----------------------
Confidence            4579999997654422 22  234566667778889999999998 89999999988                       


Q ss_pred             hhhhhhhhcccCceecCCCCCeEecccccccccCc
Q psy3253          99 QIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTD  133 (251)
Q Consensus        99 ~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~  133 (251)
                                +.||++. ++.+.++|||.+.....
T Consensus       153 ----------~~NIL~~-~~~v~iIDF~qav~~~h  176 (197)
T cd05146         153 ----------EYNMLWH-DGKVWFIDVSQSVEPTH  176 (197)
T ss_pred             ----------HHHEEEE-CCcEEEEECCCceeCCC
Confidence                      7777775 35699999999966543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.83  E-value=7.7e-09  Score=91.73  Aligned_cols=78  Identities=24%  Similarity=0.391  Sum_probs=59.6

Q ss_pred             CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHhCCccccCCCCCCCCccccccccccccccccch
Q psy3253          20 TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK-GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITN   98 (251)
Q Consensus        20 ~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~-~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~   98 (251)
                      ...++||||++|++|.++........+   ...++.+++. .+..+|..|++|+|+|                       
T Consensus       231 ~~~vLvmE~i~G~~L~~~~~~~~~~~~---~~~ia~~~~~~~l~ql~~~g~~H~D~h-----------------------  284 (437)
T TIGR01982       231 SERVLTMEWIDGIPLSDIAALDEAGLD---RKALAENLARSFLNQVLRDGFFHADLH-----------------------  284 (437)
T ss_pred             CCceEEEEeECCcccccHHHHHhcCCC---HHHHHHHHHHHHHHHHHhCCceeCCCC-----------------------
Confidence            346899999999999988753322332   2345555555 4788999999999988                       


Q ss_pred             hhhhhhhhcccCceecCCCCCeEecccccccccCc
Q psy3253          99 QIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTD  133 (251)
Q Consensus        99 ~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~  133 (251)
                                |.||++..++.++++|||++...+.
T Consensus       285 ----------PgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       285 ----------PGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             ----------cccEEECCCCcEEEEeCCCeeECCH
Confidence                      7788888888999999999977653

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG3741|consensus

Probab=98.76  E-value=6.7e-08  Score=84.84  Aligned_cols=173  Identities=15%  Similarity=0.224  Sum_probs=122.1

Q ss_pred             CCCCCCccceeeeeEee----CCeEEEEEEccC-CCCHHHHHHHh--------------CCCCCHHHHHHHHHHHHHHHH
Q psy3253           2 QQCDSPYVVKYYGSYFK----NTDLWIVMEYCG-AGSVSDIMRLR--------------KKTLSEDEIATILCDTLKGLE   62 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~----~~~~~lv~e~~~-~gsL~~~~~~~--------------~~~l~~~~~~~~~~~i~~~l~   62 (251)
                      +++.|+|||.+.++|.+    +..+++|++|.. .++|.++.-.+              +...+++..+.++.|+..||.
T Consensus       328 kkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~  407 (655)
T KOG3741|consen  328 KKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALY  407 (655)
T ss_pred             HHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHH
Confidence            57899999999999974    346999999985 56888766311              235788999999999999999


Q ss_pred             HHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccc
Q psy3253          63 YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVI  142 (251)
Q Consensus        63 ~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  142 (251)
                      ++|+.|..-+-+.                                 +.+|+++.+..++|+.-|.--....+.       
T Consensus       408 sIHssGLAck~L~---------------------------------~~kIlv~G~~RIriS~C~i~Dvl~~d~-------  447 (655)
T KOG3741|consen  408 SIHSSGLACKTLD---------------------------------LKKILVTGKMRIRISGCGIMDVLQEDP-------  447 (655)
T ss_pred             HHHhcCceeeccc---------------------------------HhHeEeeCcceEEEecccceeeecCCC-------
Confidence            9999998777755                                 778888888778877655542222111       


Q ss_pred             cccccccccccccCCCCcchhHHHHHHHHHHHHhCCCC-C-CCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhh
Q psy3253         143 GTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP-Y-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLV  220 (251)
Q Consensus       143 ~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  220 (251)
                           .  +.+.   -..+-|.=.||.++..|.||..- + .+.+.......+          -..++.++++++..+..
T Consensus       448 -----~--~~le---~~Qq~D~~~lG~ll~aLAt~~~ns~~~d~~~~s~~~~I----------~~~yS~D~rn~v~yl~s  507 (655)
T KOG3741|consen  448 -----T--EPLE---SQQQNDLRDLGLLLLALATGTENSNRTDSTQSSHLTRI----------TTTYSTDLRNVVEYLES  507 (655)
T ss_pred             -----C--cchh---HHhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHh----------hhhhhHHHHHHHHHHHh
Confidence                 0  1111   12357999999999999998532 1 111222212222          24468899999999999


Q ss_pred             cCcCccCCHHHHhcC
Q psy3253         221 KNPEERATASEMLNH  235 (251)
Q Consensus       221 ~~p~~Rps~~evl~h  235 (251)
                      .++.+ -++.+++.+
T Consensus       508 ~~~~~-ksI~~llp~  521 (655)
T KOG3741|consen  508 LNFRE-KSIQDLLPM  521 (655)
T ss_pred             cCccc-ccHHHHHHH
Confidence            99986 578887754

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.73  E-value=9.3e-08  Score=79.31  Aligned_cols=63  Identities=14%  Similarity=0.020  Sum_probs=50.9

Q ss_pred             CeEEEEEEccCCC-CHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcc
Q psy3253          20 TDLWIVMEYCGAG-SVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV   82 (251)
Q Consensus        20 ~~~~lv~e~~~~g-sL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~   82 (251)
                      ...++|+|++++. +|.+++... ....+......++.+++..+.-||+.|++|+|++++|||+.
T Consensus       108 ~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~  172 (268)
T PRK15123        108 RTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLH  172 (268)
T ss_pred             ceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEe
Confidence            3578999999875 899998532 34566778889999999999999999999999995555554

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.70  E-value=3.2e-07  Score=78.97  Aligned_cols=176  Identities=15%  Similarity=0.237  Sum_probs=115.1

Q ss_pred             EEEEEEccCCCC-HHHHHH-----HhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccc
Q psy3253          22 LWIVMEYCGAGS-VSDIMR-----LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNV   95 (251)
Q Consensus        22 ~~lv~e~~~~gs-L~~~~~-----~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~   95 (251)
                      +-++|+.+.|.. .-.+++     +.-..+.+.-.++.++.++.+...||..|..-||+.                    
T Consensus        85 iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~Gh~vGDVn--------------------  144 (637)
T COG4248          85 IGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHGHVVGDVN--------------------  144 (637)
T ss_pred             eEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcCCcccccC--------------------
Confidence            667888876541 212221     222457889999999999999999999999999988                    


Q ss_pred             cchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc-----cCCCCcchhHHHHHHH
Q psy3253          96 ITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----EIGYDCVADMWSLGIT  170 (251)
Q Consensus        96 ~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~DvwslG~~  170 (251)
                                   ++|++++.++.+.|.|=..-. +...........|...|.+||.-.     +..-+...|.|.||++
T Consensus       145 -------------~~~~lVsd~~~V~LVdsDsfq-i~~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavL  210 (637)
T COG4248         145 -------------QNSFLVSDDSKVVLVDSDSFQ-INANGTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVL  210 (637)
T ss_pred             -------------ccceeeecCceEEEEccccee-eccCCceEecccCccccCCHHHhccccccccCCCccccchhHHHH
Confidence                         777777777777776532211 112223334456788899999764     3445667999999999


Q ss_pred             HHHHHhC-CCCCCCCCcc-------h-hhh-----hcCC-----CCCCCCCCCCCCCHHHHHHHHHhhhcC--cCccCCH
Q psy3253         171 ALEMAEG-KPPYGDIHPM-------R-AIF-----MIPT-----KPPPSFREPDVWTPEFIDFVSRCLVKN--PEERATA  229 (251)
Q Consensus       171 l~~l~~g-~~p~~~~~~~-------~-~~~-----~~~~-----~~~~~~~~~~~~~~~~~~li~~~l~~~--p~~Rps~  229 (251)
                      +++++.| ..||.+....       + .+.     .-..     ..++.-..+.-+++++..+..+|+..-  +.-|||+
T Consensus       211 iF~lL~ggrHPysGI~~~~~ap~p~E~~Ia~g~f~ya~~~~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a  290 (637)
T COG4248         211 IFHLLFGGRHPYSGIPLISDAPNPLETDIAHGRFAYASDQRRGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTA  290 (637)
T ss_pred             HHHHHhcCCCCCCcccccCCCCCcchhhhhcceeeechhccCCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCH
Confidence            9998875 8999643211       1 000     0000     111112223446789999999999764  5679987


Q ss_pred             HH
Q psy3253         230 SE  231 (251)
Q Consensus       230 ~e  231 (251)
                      +.
T Consensus       291 ~a  292 (637)
T COG4248         291 KA  292 (637)
T ss_pred             HH
Confidence            54

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.66  E-value=9.3e-08  Score=73.74  Aligned_cols=71  Identities=24%  Similarity=0.321  Sum_probs=56.0

Q ss_pred             eCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccc
Q psy3253          18 KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVIT   97 (251)
Q Consensus        18 ~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~   97 (251)
                      +.....++|||.+|..|.+++...        ...++..+-.-+.-||..||+|+|+.                      
T Consensus        70 D~~~~~I~me~I~G~~lkd~l~~~--------~~~~~r~vG~~vg~lH~~givHGDLT----------------------  119 (204)
T COG3642          70 DPDNGLIVMEYIEGELLKDALEEA--------RPDLLREVGRLVGKLHKAGIVHGDLT----------------------  119 (204)
T ss_pred             cCCCCEEEEEEeCChhHHHHHHhc--------chHHHHHHHHHHHHHHhcCeecCCCc----------------------
Confidence            344457999999999999888633        24566777778889999999999977                      


Q ss_pred             hhhhhhhhhcccCceecCCCCCeEecccccccc
Q psy3253          98 NQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus        98 ~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~  130 (251)
                                 ++|+++.... +.++|||++..
T Consensus       120 -----------tsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642         120 -----------TSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             -----------cceEEEeCCc-EEEEECCcccc
Confidence                       7777776655 89999999853

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.62  E-value=2e-07  Score=74.53  Aligned_cols=76  Identities=17%  Similarity=0.249  Sum_probs=61.6

Q ss_pred             eEEEEEEccCCC-CHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchh
Q psy3253          21 DLWIVMEYCGAG-SVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQ   99 (251)
Q Consensus        21 ~~~lv~e~~~~g-sL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~   99 (251)
                      ..++|+|++++. +|.+++... ...+......++.+++..+.-||+.|++|+|++                        
T Consensus        91 ~s~lite~l~~~~~L~~~~~~~-~~~~~~~~~~ll~~l~~~i~~lH~~gi~H~Dl~------------------------  145 (206)
T PF06293_consen   91 RSYLITEALPGAQDLRDLLQQW-EQLDPSQRRELLRALARLIAKLHDAGIYHGDLN------------------------  145 (206)
T ss_pred             eEEEEEEeCCCcccHHHHHHhh-cccchhhHHHHHHHHHHHHHHHHHCcCCCCCCC------------------------
Confidence            468999999874 899998742 237777888999999999999999999999988                        


Q ss_pred             hhhhhhhcccCceecCCCC---CeEecccccccc
Q psy3253         100 IYKTLFRLKAGNILLNTEG---HAKLADFGVAGQ  130 (251)
Q Consensus       100 ~~~~~~~~~~~nil~~~~~---~~kl~dfg~~~~  130 (251)
                               +.||++..++   .+.++||+.+..
T Consensus       146 ---------~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  146 ---------PSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             ---------cccEEEeCCCCceeEEEEcchhcee
Confidence                     5555555554   789999998754

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG3087|consensus

Probab=98.60  E-value=2.7e-07  Score=71.12  Aligned_cols=80  Identities=30%  Similarity=0.359  Sum_probs=58.9

Q ss_pred             eCCeEEEEEEccCC-CCHHHHHHHhCCCCCHHHH-HHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccc
Q psy3253          18 KNTDLWIVMEYCGA-GSVSDIMRLRKKTLSEDEI-ATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNV   95 (251)
Q Consensus        18 ~~~~~~lv~e~~~~-gsL~~~~~~~~~~l~~~~~-~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~   95 (251)
                      +...-.+.|||.+| .++.+++...-..-.+... ..++.+|-..+.-||..+++|||+.                    
T Consensus        81 D~~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLT--------------------  140 (229)
T KOG3087|consen   81 DTYGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDIIHGDLT--------------------  140 (229)
T ss_pred             ecCCCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCeeccccc--------------------
Confidence            44445788999976 4888888744433333333 6788899999999999999999977                    


Q ss_pred             cchhhhhhhhhcccCceecCCCC---CeEecccccccc
Q psy3253          96 ITNQIYKTLFRLKAGNILLNTEG---HAKLADFGVAGQ  130 (251)
Q Consensus        96 ~~~~~~~~~~~~~~~nil~~~~~---~~kl~dfg~~~~  130 (251)
                                   .+||++..++   .+.++|||++..
T Consensus       141 -------------TSNill~~~~~~~~~~lIdfgls~~  165 (229)
T KOG3087|consen  141 -------------TSNILLRSDGNQITPILIDFGLSSV  165 (229)
T ss_pred             -------------ccceEEecCCCcCceEEEeecchhc
Confidence                         6676665444   357899999854

>KOG0576|consensus

Probab=98.53  E-value=1.4e-08  Score=91.07  Aligned_cols=203  Identities=35%  Similarity=0.514  Sum_probs=139.0

Q ss_pred             CCCCCCCc-cceeeeeEeeCCeEEEEEEccCCC-CHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPY-VVKYYGSYFKNTDLWIVMEYCGAG-SVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpn-iv~l~~~~~~~~~~~lv~e~~~~g-sL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |.+++||| .++.++.++.+....+.++++.++ +-...+......+.+-+...+++.-..+++++|+.--+|+|     
T Consensus       287 LdK~n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs~~~~~~~se~~~~~~~~~~~~r~et~~l~~l~~~~~~~~d-----  361 (829)
T KOG0576|consen  287 LDKVNNPNPVVRYLEDYDGEDYLWIPMRICSTGRSSALEMTVSEIALEQYQFAYPLRKETRPLAELHSSYKVHRD-----  361 (829)
T ss_pred             HHHccCCCCcccccccCCcccccchhhhhhcCCccccccCChhhHhhhhhhhhhhhhhhcccccccccccccCcc-----
Confidence            46889999 888888888888999999999877 33222222223444555555666677789999987666776     


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                      ||+..+ +..+..+|+......... ......+++.++|||+.....+
T Consensus       362 --------------------------------~~l~s~-~~~~~~~~~v~~~L~~~~-~~~t~~~~~~~~~pev~~~~~~  407 (829)
T KOG0576|consen  362 --------------------------------NILGSE-EEVKLLDFAVPPQLTRTM-KPRTAIGTPEPLAPEVIQENTI  407 (829)
T ss_pred             --------------------------------cccccc-cccccccccCCcccCccc-ccccCCCCCCCCCchhhccccc
Confidence                                            444433 457889999887665432 4556678999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHH-HHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFI-DFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      ..+.|+|++|.-..++.-|.+|-..  +......+.... .+.+.....+++... ++...|+...|..|+...+++-|.
T Consensus       408 ~~~p~~~~~~~~~~~~ap~~pPr~~--P~~~~~~~g~~p~s~~L~~~~aw~~~~~~~~~~~~~~g~P~~pkv~mgacfsK  485 (829)
T KOG0576|consen  408 DGCPDSGSLAVSAIQMAPGLPPRSS--PPAVLPMIGNGPNSPMLTDKSAWSPVFHRDFPAPCLNGLPPTPKVHMGACFSK  485 (829)
T ss_pred             ccCCCccCCCcchhhcCCCCCCCCC--CccccCCCCCCCCccccchhhhcCcccccCCcccccCCCCCCCcchhhHHHHH
Confidence            9999999999877777777766533  222222222111 111111122333333 477889999999999999999999


Q ss_pred             hhhhccCC
Q psy3253         237 FIQRHDTD  244 (251)
Q Consensus       237 ~~~~~~~~  244 (251)
                      +|.+...-
T Consensus       486 vfngCpl~  493 (829)
T KOG0576|consen  486 VFNGCPLR  493 (829)
T ss_pred             HhccCccc
Confidence            99886653

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.52  E-value=1.8e-07  Score=72.02  Aligned_cols=75  Identities=25%  Similarity=0.240  Sum_probs=55.1

Q ss_pred             ceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCc-----cccCCCCCCCCcccc
Q psy3253          10 VKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRK-----IHRDIKAGSGTLVYD   84 (251)
Q Consensus        10 v~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~i-----iH~dik~~Ni~~~~~   84 (251)
                      .+++....  ...++||||++|.++.+.         .......+.+++.+|..||+.++     +|+|++         
T Consensus        56 P~~~~~~~--~~~~lv~e~i~G~~l~~~---------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~---------  115 (170)
T cd05151          56 PKLYYFDP--ETGVLITEFIEGSELLTE---------DFSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLL---------  115 (170)
T ss_pred             CceEEEeC--CCCeEEEEecCCCccccc---------cccCHHHHHHHHHHHHHHhCCCCCCceeecCCCC---------
Confidence            34454432  335799999999887542         11123456789999999999885     999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEeccccccc
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAG  129 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~  129 (251)
                                              |.||+++ ++.++++|||.+.
T Consensus       116 ------------------------~~Nil~~-~~~~~liDf~~a~  135 (170)
T cd05151         116 ------------------------PGNFLLD-DGRLWLIDWEYAG  135 (170)
T ss_pred             ------------------------cCcEEEE-CCeEEEEeccccc
Confidence                                    7788887 5679999999984

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.47  E-value=1.9e-07  Score=84.38  Aligned_cols=87  Identities=24%  Similarity=0.357  Sum_probs=56.5

Q ss_pred             CccceeeeeEee-CCeEEEEEEccCCCCHHHHHHHhCCC-----CCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           7 PYVVKYYGSYFK-NTDLWIVMEYCGAGSVSDIMRLRKKT-----LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         7 pniv~l~~~~~~-~~~~~lv~e~~~~gsL~~~~~~~~~~-----l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      .+.+.+-.++.+ ....+|||||++|+.+.++-......     +.+..+..++.|+       ...|++|+|+|     
T Consensus       220 ~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qi-------f~~GffHaDpH-----  287 (537)
T PRK04750        220 SDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQV-------FRDGFFHADMH-----  287 (537)
T ss_pred             CCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHH-------HhCCeeeCCCC-----
Confidence            333444444432 34568999999999998753222222     3334444444444       46999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCC----CeEecccccccccCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG----HAKLADFGVAGQLTD  133 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~----~~kl~dfg~~~~~~~  133 (251)
                                                  |.||+++.++    .++++|||++...+.
T Consensus       288 ----------------------------PGNIlv~~~g~~~~~i~llDFGivg~l~~  316 (537)
T PRK04750        288 ----------------------------PGNIFVSYDPPENPRYIALDFGIVGSLNK  316 (537)
T ss_pred             ----------------------------hHHeEEecCCCCCCeEEEEecceEEECCH
Confidence                                        6666666555    899999999976654

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.45  E-value=1.6e-07  Score=73.72  Aligned_cols=74  Identities=30%  Similarity=0.392  Sum_probs=49.5

Q ss_pred             EEEEEEccC--CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH-HHhCCccccCCCCCCCCccccccccccccccccch
Q psy3253          22 LWIVMEYCG--AGSVSDIMRLRKKTLSEDEIATILCDTLKGLEY-LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITN   98 (251)
Q Consensus        22 ~~lv~e~~~--~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~-LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~   98 (251)
                      -++||||++  |..+..+..   ..++......++.+++..+.. +|..|++|||++                       
T Consensus        81 ~~ivME~I~~~G~~~~~l~~---~~~~~~~~~~~~~~il~~~~~~~~~~givHGDLs-----------------------  134 (188)
T PF01163_consen   81 NVIVMEYIGEDGVPLPRLKD---VDLSPEEPKELLEEILEEIIKMLHKAGIVHGDLS-----------------------  134 (188)
T ss_dssp             TEEEEE--EETTEEGGCHHH---CGGGGSTHHHHHHHHHHHHHHHHHCTTEEESS-S-----------------------
T ss_pred             CEEEEEecCCCccchhhHHh---ccccchhHHHHHHHHHHHHHHHHHhcCceecCCC-----------------------
Confidence            379999998  656655433   222245566677788775555 679999999977                       


Q ss_pred             hhhhhhhhcccCceecCCCCCeEecccccccccC
Q psy3253          99 QIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT  132 (251)
Q Consensus        99 ~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~  132 (251)
                                +.||+++.+ .+.++|||.+....
T Consensus       135 ----------~~NIlv~~~-~~~iIDf~qav~~~  157 (188)
T PF01163_consen  135 ----------EYNILVDDG-KVYIIDFGQAVDSS  157 (188)
T ss_dssp             ----------TTSEEEETT-CEEE--GTTEEETT
T ss_pred             ----------hhhEEeecc-eEEEEecCcceecC
Confidence                      778888777 79999999986544

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG1035|consensus

Probab=98.41  E-value=1.5e-06  Score=83.04  Aligned_cols=197  Identities=22%  Similarity=0.328  Sum_probs=132.9

Q ss_pred             CCCCCCccceeeeeEeeCCe----EEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTD----LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~----~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      .+..|+|++.++.+-.....    ..+..++|..-++...++ .-...+..+.+.+..++.+||.++|+....|.-+..+
T Consensus       237 ~k~~~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q-~v~~i~~~~~r~~~~~~~~GL~~~h~~~l~~v~L~~s  315 (1351)
T KOG1035|consen  237 SKIAHDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQ-SVGSIPLETLRILHQKLLEGLAYLHSLSLEHVVLSAS  315 (1351)
T ss_pred             HhhccccccceeEEeehhhcchHHHHHHHhhcCccchHHHHh-hccccCHHHHHHHHHHHhhhHHHHHHhccceeEEecc
Confidence            46789999999988765432    335567888888888776 5578899999999999999999999985444432200


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEec--ccccccccCccccccccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA--DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~--dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                    .....-.+..+.+.++  ||+..+...... ..........+.++|....
T Consensus       316 ------------------------------~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~-~~~~~~~~~~~~~~e~~~~  364 (1351)
T KOG1035|consen  316 ------------------------------SSKESTVDGEGVVAISLSDFDSSKPLPDNE-KSFSDLLAEIRNADEDLKE  364 (1351)
T ss_pred             ------------------------------cccccccCccceeecchhhhcccccCCCcc-cchhhcCcccccccccccc
Confidence                                          0112333444556655  888876655432 2222334455778888876


Q ss_pred             CCCCcc--hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         156 IGYDCV--ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       156 ~~~~~~--~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      ..++.+  .|+|.+|.+...+..|..+-....          . ...+ .+........+...+|+.-++++|+++.+++
T Consensus       365 ~~~~~~r~~dL~~lgll~~~~~~~~~i~~~~~----------~-~~~~-l~~~~~~~~~d~~~~~~~~~~~~Rl~~~~ll  432 (1351)
T KOG1035|consen  365 NTAKKSRLTDLWCLGLLLLQLSQGEDISEKSA----------V-PVSL-LDVLSTSELLDALPKCLDEDSEERLSALELL  432 (1351)
T ss_pred             ccchhhhhhHHHHHHHHHhhhhhcCccccccc----------c-hhhh-hccccchhhhhhhhhhcchhhhhccchhhhh
Confidence            655554  799999999999888764421100          0 0011 0111222778999999999999999999999


Q ss_pred             cChhhhhcc
Q psy3253         234 NHEFIQRHD  242 (251)
Q Consensus       234 ~hp~~~~~~  242 (251)
                      .|+|.+...
T Consensus       433 ~~~f~~~~~  441 (1351)
T KOG1035|consen  433 THPFLRFPT  441 (1351)
T ss_pred             hchhccccc
Confidence            999987543

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.16  E-value=5.3e-06  Score=66.23  Aligned_cols=66  Identities=23%  Similarity=0.366  Sum_probs=50.8

Q ss_pred             eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhh
Q psy3253          21 DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQI  100 (251)
Q Consensus        21 ~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~  100 (251)
                      ..+|+|||++|..|.++..     +++    .+...++.++.-+|+.|+.|||.+                         
T Consensus       117 ~~~ll~EYIeG~~l~d~~~-----i~e----~~~~ki~~~ikqlH~~G~~HGD~h-------------------------  162 (229)
T PF06176_consen  117 SYVLLMEYIEGVELNDIED-----IDE----DLAEKIVEAIKQLHKHGFYHGDPH-------------------------  162 (229)
T ss_pred             EEEEEEEEecCeecccchh-----cCH----HHHHHHHHHHHHHHHcCCccCCCC-------------------------
Confidence            4579999999988866532     222    244567788999999999999988                         


Q ss_pred             hhhhhhcccCceecCCCCCeEeccccccc
Q psy3253         101 YKTLFRLKAGNILLNTEGHAKLADFGVAG  129 (251)
Q Consensus       101 ~~~~~~~~~~nil~~~~~~~kl~dfg~~~  129 (251)
                              |.|++++.++ ++++||+..+
T Consensus       163 --------pgNFlv~~~~-i~iID~~~k~  182 (229)
T PF06176_consen  163 --------PGNFLVSNNG-IRIIDTQGKR  182 (229)
T ss_pred             --------cCcEEEECCc-EEEEECcccc
Confidence                    7788887655 8999997653

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=97.97  E-value=1.3e-05  Score=64.14  Aligned_cols=59  Identities=20%  Similarity=0.122  Sum_probs=44.8

Q ss_pred             ccceeeeeEeeC---CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy3253           8 YVVKYYGSYFKN---TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR   68 (251)
Q Consensus         8 niv~l~~~~~~~---~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~   68 (251)
                      ++.+++.+....   +..++||||++|.++.+.+.  ...+++.....++.+++.+|..||+..
T Consensus        58 ~vp~~~~~~~~~~~~~~~~~v~e~i~G~~l~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~  119 (223)
T cd05154          58 PVPKVLALCEDPSVLGTPFYVMERVDGRVLRDRLL--RPELSPEERRALARALADTLAALHSVD  119 (223)
T ss_pred             CCCCEEEECCCCCccCCceEEEEEeCCEecCCCCC--CCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            355666666543   25689999999988876542  146788888899999999999999865

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>PRK09902 hypothetical protein; Provisional

Probab=97.88  E-value=8.6e-05  Score=59.11  Aligned_cols=77  Identities=18%  Similarity=0.185  Sum_probs=61.0

Q ss_pred             eEEEEEEccC-CCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccch
Q psy3253          21 DLWIVMEYCG-AGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITN   98 (251)
Q Consensus        21 ~~~lv~e~~~-~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~   98 (251)
                      ..+||+|-++ ..||.+++.... ...+......++.+++..+.-||+.|+.|+|+.                       
T Consensus        99 rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly-----------------------  155 (216)
T PRK09902         99 RALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCY-----------------------  155 (216)
T ss_pred             EEEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCC-----------------------
Confidence            4789999664 358999885322 345778888999999999999999999999977                       


Q ss_pred             hhhhhhhhcccCceecCCCCC--eEecccccccc
Q psy3253          99 QIYKTLFRLKAGNILLNTEGH--AKLADFGVAGQ  130 (251)
Q Consensus        99 ~~~~~~~~~~~~nil~~~~~~--~kl~dfg~~~~  130 (251)
                                +.||+++..+.  ++++||.-++.
T Consensus       156 ----------~khIll~~~g~~~v~lIDlEk~r~  179 (216)
T PRK09902        156 ----------VRHIYVKTEGKAEAGFLDLEKSRR  179 (216)
T ss_pred             ----------HhheeecCCCCeeEEEEEhhccch
Confidence                      67777765555  89999987753

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.70  E-value=8.4e-05  Score=60.99  Aligned_cols=73  Identities=23%  Similarity=0.292  Sum_probs=56.9

Q ss_pred             eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhh
Q psy3253          21 DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQI  100 (251)
Q Consensus        21 ~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~  100 (251)
                      .-.+||||.+|-.|...      .++......++..|+.-+.-.-..|++|||++                         
T Consensus       181 RHaVvMe~ieG~eL~~~------r~~~en~~~il~~il~~~~~~~~~GiVHGDlS-------------------------  229 (304)
T COG0478         181 RHAVVMEYIEGVELYRL------RLDVENPDEILDKILEEVRKAYRRGIVHGDLS-------------------------  229 (304)
T ss_pred             cceeeeehcccceeecc------cCcccCHHHHHHHHHHHHHHHHHcCccccCCc-------------------------
Confidence            45799999998665332      23455566667777777777779999999977                         


Q ss_pred             hhhhhhcccCceecCCCCCeEecccccccccC
Q psy3253         101 YKTLFRLKAGNILLNTEGHAKLADFGVAGQLT  132 (251)
Q Consensus       101 ~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~  132 (251)
                              +-||+++.+|.+.++||-.+...+
T Consensus       230 --------efNIlV~~dg~~~vIDwPQ~v~~~  253 (304)
T COG0478         230 --------EFNILVTEDGDIVVIDWPQAVPIS  253 (304)
T ss_pred             --------hheEEEecCCCEEEEeCcccccCC
Confidence                    999999999999999998875544

>KOG1235|consensus

Probab=97.59  E-value=0.00021  Score=64.51  Aligned_cols=83  Identities=20%  Similarity=0.298  Sum_probs=57.2

Q ss_pred             CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchh
Q psy3253          20 TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQ   99 (251)
Q Consensus        20 ~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~   99 (251)
                      ...+|+||||+|..+.+.-......++...+..-+.+..  +..+-..|++|+|-+|.||+++                 
T Consensus       275 t~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~--~~qIf~~GffHaDPHPGNilv~-----------------  335 (538)
T KOG1235|consen  275 TKRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAY--LEQIFKTGFFHADPHPGNILVR-----------------  335 (538)
T ss_pred             cceEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHH--HHHHHhcCCccCCCCCCcEEEe-----------------
Confidence            357999999999988766554556676665544443332  3344567899999997777666                 


Q ss_pred             hhhhhhhcccCceecCCCCCeEecccccccccCc
Q psy3253         100 IYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTD  133 (251)
Q Consensus       100 ~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~  133 (251)
                               +.+   ..++.+.+.|||+......
T Consensus       336 ---------~~~---~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  336 ---------PNP---EGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             ---------cCC---CCCccEEEEcccccccccH
Confidence                     322   3456789999999876554

>KOG1826|consensus

Probab=97.56  E-value=7.6e-06  Score=80.34  Aligned_cols=202  Identities=11%  Similarity=0.026  Sum_probs=130.5

Q ss_pred             CCCCCccceeeeeEe--eCCeEEEEEEccCCCCHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHhC-C----cccc
Q psy3253           3 QCDSPYVVKYYGSYF--KNTDLWIVMEYCGAGSVSDIMRLRK---KTLSEDEIATILCDTLKGLEYLHLR-R----KIHR   72 (251)
Q Consensus         3 ~l~hpniv~l~~~~~--~~~~~~lv~e~~~~gsL~~~~~~~~---~~l~~~~~~~~~~~i~~~l~~LH~~-~----iiH~   72 (251)
                      +..|+++.+.+.=..  +....+..++|+.+|.+++.+-+.-   ..+.+.-+...-.+.+.+..-.|.. +    .+|+
T Consensus      1285 ~~~h~~~~~~p~rI~ps~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~ 1364 (2724)
T KOG1826|consen 1285 EAKHYLTEVDPLRIPPSESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSK 1364 (2724)
T ss_pred             hhhceeeecccccCCCCCChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhh
Confidence            346777666554332  2334688999999999999886332   2333333333333435666666653 2    3677


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEV  152 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  152 (251)
                      ++|                                 +.|.++..+..++++++|+.+.........+...+++.|++|++
T Consensus      1365 ~Lk---------------------------------f~lpmIVtny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli 1411 (2724)
T KOG1826|consen 1365 SLK---------------------------------FTLPMIVTNYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLI 1411 (2724)
T ss_pred             hhh---------------------------------hhccceecCCcccccccccccccCchHhhhhhhhCCHHHHHHHH
Confidence            766                                 77777777788999999999844444445566678888999999


Q ss_pred             cccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         153 IQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       153 ~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      .+...++.++|+|..|+.+|....|..+|..-.+......+...  .....+.-.|.+.-.....+|-+....||.-..+
T Consensus      1412 ~N~ik~t~rsdilr~s~~ly~rs~~n~~fi~flq~~Lkgiidn~--tf~sIe~l~pgdaNve~~~~Ll~K~~~rp~q~is 1489 (2724)
T KOG1826|consen 1412 KNEIKFTKRSDILRRSLSLYLRSDGNAYFIFFLQPALKGIIDNH--TFFSIEKLKPGDANVEALHRLLWKYMERPGQYIS 1489 (2724)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCccccc--ccccccccCCCcccHHHHHHHHHHhhhcchhhhh
Confidence            99888898999999999999998888777322221111111111  1222233334455555555666666788988888


Q ss_pred             hcChhhh
Q psy3253         233 LNHEFIQ  239 (251)
Q Consensus       233 l~hp~~~  239 (251)
                      +..+.|-
T Consensus      1490 ls~d~~a 1496 (2724)
T KOG1826|consen 1490 LSRDHFA 1496 (2724)
T ss_pred             ccccccc
Confidence            8777664

>KOG1093|consensus

Probab=97.42  E-value=0.00015  Score=64.55  Aligned_cols=81  Identities=16%  Similarity=0.198  Sum_probs=54.1

Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC--CCCC-------CCCCCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP--PPSF-------REPDVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      +|+||||+|.++.++..|...+......+....+..-.  +...       ...-.++..+.++..+|+...|..||...
T Consensus       110 pKsdVwsl~~i~~el~L~~~l~~~~~~s~~l~~i~k~~~~d~~~~~~a~e~~~~~~~d~~~~~~~~~c~~~~~~ir~l~~  189 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGISLEAELTESEYLEILLKYYTDDQELLSTAMEHLIQLLADKKRLPLLKKCLWLEPIIRPLPM  189 (725)
T ss_pred             cchhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhhhHhHHHHhccCCccccccccchh
Confidence            49999999999999999887764332222221111100  0000       00112456678999999999999999999


Q ss_pred             HHhcChhhhh
Q psy3253         231 EMLNHEFIQR  240 (251)
Q Consensus       231 evl~hp~~~~  240 (251)
                      +..+++-|..
T Consensus       190 ~~~k~~i~~e  199 (725)
T KOG1093|consen  190 ELSKRCSFTE  199 (725)
T ss_pred             HHhcCccHHH
Confidence            9999988764

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=97.39  E-value=0.00026  Score=57.45  Aligned_cols=78  Identities=23%  Similarity=0.338  Sum_probs=56.1

Q ss_pred             eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCCCccccccccccccccccchh
Q psy3253          21 DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQ   99 (251)
Q Consensus        21 ~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~   99 (251)
                      +-.|||||+....+ -.=..+.-.+...++..+..+++..+.-|-. .|++|+|++                        
T Consensus       140 ~nVLvMEfIg~~g~-pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLS------------------------  194 (268)
T COG1718         140 NNVLVMEFIGDDGL-PAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLS------------------------  194 (268)
T ss_pred             CCeEEEEeccCCCC-CCCCcccCCcCchhHHHHHHHHHHHHHHHHHhcCcccccch------------------------
Confidence            35799999944211 0000112233444788888999999998887 899999977                        


Q ss_pred             hhhhhhhcccCceecCCCCCeEecccccccccCc
Q psy3253         100 IYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTD  133 (251)
Q Consensus       100 ~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~  133 (251)
                               .-||++. ++.+.++|+|.+.....
T Consensus       195 ---------EyNiL~~-~~~p~iID~~QaV~~~h  218 (268)
T COG1718         195 ---------EYNILVH-DGEPYIIDVSQAVTIDH  218 (268)
T ss_pred             ---------hhheEEE-CCeEEEEECccccccCC
Confidence                     8899998 77799999999976553

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=97.37  E-value=0.00032  Score=55.15  Aligned_cols=90  Identities=27%  Similarity=0.220  Sum_probs=69.2

Q ss_pred             CCCC-CccceeeeeEeeCCeEEEEEEccCCCCHHHH---HHHhCCCCCHHHHHHHHHHHHHHHHHHHh---CCccccCCC
Q psy3253           3 QCDS-PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDI---MRLRKKTLSEDEIATILCDTLKGLEYLHL---RRKIHRDIK   75 (251)
Q Consensus         3 ~l~h-pniv~l~~~~~~~~~~~lv~e~~~~gsL~~~---~~~~~~~l~~~~~~~~~~~i~~~l~~LH~---~~iiH~dik   75 (251)
                      .+++ +++.+++|+|-    .+++.||...+++...   +. .-...++..+..++.+++..+.+|+.   ..+.-.|++
T Consensus        15 ~l~~~~~~pk~lG~CG----~~~v~E~~~~~~~~~~~~~l~-~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~   89 (188)
T PF12260_consen   15 LLQGSEPFPKLLGSCG----RFYVVEYVGAGSLYGIYRPLS-QFLQSPWEQRAKIALQLLELLEELDHGPLGFFYLCDVS   89 (188)
T ss_pred             HcCCCCCCCCeeeECC----CEEEEEeecCccccccccccc-cccccCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecc
Confidence            3443 69999999992    3679999976655421   11 11346889999999999999999997   347788977


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~  130 (251)
                                                       ++|+.++.++.+|++|...+..
T Consensus        90 ---------------------------------~~nfgv~~~~~lk~iDld~v~~  111 (188)
T PF12260_consen   90 ---------------------------------PDNFGVNDDGRLKLIDLDDVFV  111 (188)
T ss_pred             ---------------------------------hHHeEEeCCCcEEEEechhcch
Confidence                                             8899999999999999987743

Proteins in this uncharacterised family are described as transmembrane proteins.

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.34  E-value=0.00082  Score=60.78  Aligned_cols=80  Identities=31%  Similarity=0.472  Sum_probs=58.8

Q ss_pred             CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccch
Q psy3253          19 NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITN   98 (251)
Q Consensus        19 ~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~   98 (251)
                      ....+|+|||++|-.+.+........++.+.+...+.++  -+..+-..|+.|+|.+                       
T Consensus       238 t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~--f~~q~~~dgffHaDpH-----------------------  292 (517)
T COG0661         238 TTRRVLTMEWIDGIKISDIAALKSAGIDRKELAELLVRA--FLRQLLRDGFFHADPH-----------------------  292 (517)
T ss_pred             cCCcEEEEEeeCCEecccHHHHHhcCCCHHHHHHHHHHH--HHHHHHhcCccccCCC-----------------------
Confidence            345799999999999998865445666644443333322  2444556899999998                       


Q ss_pred             hhhhhhhhcccCceecCCCCCeEecccccccccCc
Q psy3253          99 QIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTD  133 (251)
Q Consensus        99 ~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~  133 (251)
                                |.|+++..++.+.+.|||+......
T Consensus       293 ----------pGNi~v~~~g~i~~lDfGi~g~l~~  317 (517)
T COG0661         293 ----------PGNILVRSDGRIVLLDFGIVGRLDP  317 (517)
T ss_pred             ----------ccceEEecCCcEEEEcCcceecCCH
Confidence                      7788888889999999999976654

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=96.59  E-value=0.021  Score=45.32  Aligned_cols=74  Identities=22%  Similarity=0.275  Sum_probs=54.7

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccC------CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCG------AGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~------~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      ...+.+|.+++|+.+++...-+|+|...      ..+|.+++.  .+.++. .....+   -.-.++|-+.+|+.+|++|
T Consensus        73 ~~~~~~i~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~--~~~~~~-~~~~~L---~~f~~~l~~~~Iv~~dl~~  146 (199)
T PF10707_consen   73 GVDWSHIPRFYGFVETNLGLGLVVELIRDADGNISPTLEDYLK--EGGLTE-ELRQAL---DEFKRYLLDHHIVIRDLNP  146 (199)
T ss_pred             CCcccccccEeEEEecCCceEEEEEEEECCCCCcCccHHHHHH--cCCccH-HHHHHH---HHHHHHHHHcCCeecCCCc
Confidence            3467899999999999999999999863      237888885  455666 433333   3447788999999999995


Q ss_pred             CCCCcc
Q psy3253          77 GSGTLV   82 (251)
Q Consensus        77 ~Ni~~~   82 (251)
                      +||++.
T Consensus       147 ~NIv~~  152 (199)
T PF10707_consen  147 HNIVVQ  152 (199)
T ss_pred             ccEEEE
Confidence            555554

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=96.39  E-value=0.015  Score=47.43  Aligned_cols=52  Identities=13%  Similarity=0.116  Sum_probs=32.2

Q ss_pred             cceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy3253           9 VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR   67 (251)
Q Consensus         9 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~   67 (251)
                      +.+++++....+..++|||+++|.+|.+...       ......++.+++..+.-||+.
T Consensus        54 vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~-------~~~~~~~~~~l~~~l~~lH~i  105 (244)
T cd05150          54 VPEVIDYGSDDGRAWLLTSAVPGVPAAALWE-------ELEPERLVDALAEALRRLHAL  105 (244)
T ss_pred             CCeEEEEEecCCccEEEEEeeCCccHhHhhc-------ccCHHHHHHHHHHHHHHHhcC
Confidence            4456666666566789999999988764321       111224455666666666654

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=96.29  E-value=0.029  Score=45.45  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=18.0

Q ss_pred             cccCceecCCCCCeEeccccccc
Q psy3253         107 LKAGNILLNTEGHAKLADFGVAG  129 (251)
Q Consensus       107 ~~~~nil~~~~~~~kl~dfg~~~  129 (251)
                      +.|.|++++.++ +.++||+.+.
T Consensus       160 ~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       160 FQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             CCCCcEEEcCCC-cEEEechhcC
Confidence            338899988877 8999999884

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>KOG2268|consensus

Probab=94.86  E-value=0.029  Score=47.75  Aligned_cols=74  Identities=18%  Similarity=0.178  Sum_probs=54.9

Q ss_pred             CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchh
Q psy3253          20 TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQ   99 (251)
Q Consensus        20 ~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~   99 (251)
                      +.-|+|||++.|-.|.+..+    ..+   +-.+...++.-+.-|..+|+||||..                        
T Consensus       181 ~RH~Vvmelv~g~Pl~~v~~----v~d---~~~ly~~lm~~Iv~la~~GlIHgDFN------------------------  229 (465)
T KOG2268|consen  181 NRHCVVMELVDGYPLRQVRH----VED---PPTLYDDLMGLIVRLANHGLIHGDFN------------------------  229 (465)
T ss_pred             cceeeHHHhhcccceeeeee----cCC---hHHHHHHHHHHHHHHHHcCceecccc------------------------
Confidence            34588999999888765432    112   22344556666778889999999977                        


Q ss_pred             hhhhhhhcccCceecCCCCCeEecccccccccCc
Q psy3253         100 IYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTD  133 (251)
Q Consensus       100 ~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~  133 (251)
                               --||++..++.++++||-.....+.
T Consensus       230 ---------EFNimv~dd~~i~vIDFPQmvS~sh  254 (465)
T KOG2268|consen  230 ---------EFNIMVKDDDKIVVIDFPQMVSTSH  254 (465)
T ss_pred             ---------hheeEEecCCCEEEeechHhhccCC
Confidence                     7899999999999999987765544

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=92.97  E-value=0.34  Score=42.06  Aligned_cols=73  Identities=23%  Similarity=0.333  Sum_probs=53.0

Q ss_pred             CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCCCCCCccccccccccccccccc
Q psy3253          19 NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR-RKIHRDIKAGSGTLVYDRLDYCSIKCNVIT   97 (251)
Q Consensus        19 ~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~-~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~   97 (251)
                      ....|++|++. |++|.-.     ..-..+++..++.+.+.-+.-+... ..-|||+.                      
T Consensus       298 ~~y~yl~~kdh-gt~is~i-----k~~~~~e~lsff~s~~sil~~lekkf~fehrnlt----------------------  349 (488)
T COG5072         298 TLYLYLHFKDH-GTPISII-----KADRSEEELSFFWSCISILDILEKKFPFEHRNLT----------------------  349 (488)
T ss_pred             ceEEEEEEecC-Cceeeee-----ecccHHHHHHHHHHHHHHHhhhhhcCCccccccc----------------------
Confidence            34578888987 5566321     3345677888887776655555543 46899977                      


Q ss_pred             hhhhhhhhhcccCceecCCCCCeEeccccccccc
Q psy3253          98 NQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL  131 (251)
Q Consensus        98 ~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~  131 (251)
                                 -.||+++ +|.+.|+||.+++..
T Consensus       350 -----------~~niLId-~GnvtLIDfklsRl~  371 (488)
T COG5072         350 -----------LDNILID-EGNVTLIDFKLSRLS  371 (488)
T ss_pred             -----------ccceeee-cCceEEEEeeeeecc
Confidence                       8899999 899999999999743

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=92.43  E-value=0.46  Score=37.75  Aligned_cols=64  Identities=20%  Similarity=0.263  Sum_probs=41.7

Q ss_pred             CCCCCCCcc--ceeeeeEe-e-----------------CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy3253           1 MQQCDSPYV--VKYYGSYF-K-----------------NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG   60 (251)
Q Consensus         1 l~~l~hpni--v~l~~~~~-~-----------------~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~   60 (251)
                      |++..+.++  |+++|+.. +                 .....+|.||.....          .+..+.    +.+|..-
T Consensus       111 Lke~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~----------~~~~~~----~~~~~~d  176 (207)
T PF13095_consen  111 LKEAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP----------PLQIRD----IPQMLRD  176 (207)
T ss_pred             HHhccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc----------ccchhH----HHHHHHH
Confidence            345666677  88888773 1                 112467888775532          233333    4466677


Q ss_pred             HHHHHhCCccccCCCCCC
Q psy3253          61 LEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus        61 l~~LH~~~iiH~dik~~N   78 (251)
                      +..+|..||+-+|+++.|
T Consensus       177 l~~~~k~gI~~~Dv~~~n  194 (207)
T PF13095_consen  177 LKILHKLGIVPRDVKPRN  194 (207)
T ss_pred             HHHHHHCCeeeccCcccc
Confidence            899999999999988444

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=91.27  E-value=0.34  Score=41.03  Aligned_cols=21  Identities=24%  Similarity=0.370  Sum_probs=16.9

Q ss_pred             cCceecCCCCCeEeccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAG  129 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~  129 (251)
                      +.|++++.++...++||+.+.
T Consensus       196 ~~Nvl~~~~~~~~vIDfd~~~  216 (307)
T TIGR00938       196 PDNVLFDGDSVKGVIDFYFAC  216 (307)
T ss_pred             cCcEEEECCceEEEeeccccc
Confidence            778888777766899999874

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>KOG1236|consensus

Probab=91.19  E-value=0.48  Score=41.82  Aligned_cols=64  Identities=19%  Similarity=0.246  Sum_probs=48.5

Q ss_pred             eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH-hCCccccCCCCCCCCcccccc
Q psy3253          21 DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH-LRRKIHRDIKAGSGTLVYDRL   86 (251)
Q Consensus        21 ~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH-~~~iiH~dik~~Ni~~~~~~~   86 (251)
                      ...|+-+|..|-++..++.  ....+++....++.--+.|+..+- -.+++|.|++|.||+++...-
T Consensus       319 ~~vl~E~~~~Gl~v~~~v~--~~~~pe~l~kkva~lg~~AllkMl~vDNFvHaDlHPGNVlirf~~t  383 (565)
T KOG1236|consen  319 DLVLVETYERGLSVLRFVK--WKSQPEALVKKVAKLGVNALLKMLIVDNFVHADLHPGNVLIRFNKT  383 (565)
T ss_pred             cceeeeeccccccHHhhhh--cccChHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcEEEEecCC
Confidence            3578888999999999986  345566666677766677755544 578999999999999996544

>PRK05231 homoserine kinase; Provisional

Probab=90.64  E-value=0.66  Score=39.37  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=16.2

Q ss_pred             cCceecCCCCCeEecccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~~  130 (251)
                      +.||+++.+...-++||+.+..
T Consensus       196 ~~Nil~~~~~~~~iIDf~~~~~  217 (319)
T PRK05231        196 RDNVLFEGDRLSGFIDFYFACN  217 (319)
T ss_pred             CCcEEEECCceEEEEecccccC
Confidence            7788777555457999998843

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=90.53  E-value=0.53  Score=39.69  Aligned_cols=20  Identities=30%  Similarity=0.383  Sum_probs=15.2

Q ss_pred             cCceecCCCCCeEeccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAG  129 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~  129 (251)
                      +.|++++. +.+.++||+.+.
T Consensus       196 ~~Nil~~~-~~i~lIDfd~~~  215 (313)
T TIGR02906       196 YHNILLKD-NEVYVIDFDYCT  215 (313)
T ss_pred             cccEEEeC-CcEEEEECcccc
Confidence            77887776 557899998763

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=90.01  E-value=0.5  Score=39.60  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=16.5

Q ss_pred             cCceecCCCCCeEeccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAG  129 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~  129 (251)
                      |.|++++.++...|+||+.+.
T Consensus       184 ~~Nil~~~~~~~~iIDfe~a~  204 (296)
T cd05153         184 RDNVLFDGDELSGVIDFYFAC  204 (296)
T ss_pred             cccEEEeCCceEEEeehhhhc
Confidence            778888776666899998874

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=89.83  E-value=0.39  Score=38.87  Aligned_cols=21  Identities=33%  Similarity=0.662  Sum_probs=15.7

Q ss_pred             cCceecCCCCCeEeccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAG  129 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~  129 (251)
                      +.|++++.....-|+||+.+.
T Consensus       173 ~~Nvlv~~~~i~giIDw~~a~  193 (235)
T cd05155         173 PGNLLVQDGRLSAVIDFGCLG  193 (235)
T ss_pred             CCcEEEECCCEEEEEeCcccC
Confidence            778887765545799999874

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=89.42  E-value=0.41  Score=38.57  Aligned_cols=21  Identities=38%  Similarity=0.711  Sum_probs=16.9

Q ss_pred             cCceecCC-CCCeEeccccccc
Q psy3253         109 AGNILLNT-EGHAKLADFGVAG  129 (251)
Q Consensus       109 ~~nil~~~-~~~~kl~dfg~~~  129 (251)
                      +.||+++. ++.+.++||..|.
T Consensus       179 ~~Nil~~~~~~~~~lIDwe~a~  200 (235)
T cd05157         179 SGNIIYNEEKNSVKFIDYEYAG  200 (235)
T ss_pred             cCcEEEeCCCCCEEEEEcccCC
Confidence            77888876 4679999998874

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=88.26  E-value=0.75  Score=38.70  Aligned_cols=21  Identities=43%  Similarity=0.506  Sum_probs=16.9

Q ss_pred             cCceecCCC----CCeEeccccccc
Q psy3253         109 AGNILLNTE----GHAKLADFGVAG  129 (251)
Q Consensus       109 ~~nil~~~~----~~~kl~dfg~~~  129 (251)
                      +.||+++.+    +.+.++||..+.
T Consensus       188 ~~Nil~~~~~~~~~~i~lIDwEya~  212 (302)
T cd05156         188 EGNILLLNPSSETKKLVLIDFEYAS  212 (302)
T ss_pred             cCeEEecCCCCCCCcEEEEeeCCCC
Confidence            778888764    779999999883

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>PHA03111 Ser/Thr kinase; Provisional

Probab=87.65  E-value=0.37  Score=41.29  Aligned_cols=94  Identities=14%  Similarity=0.046  Sum_probs=49.9

Q ss_pred             eEEEEEEccCCC----CHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHh----CCccccCCCCCCCCccccccccccc
Q psy3253          21 DLWIVMEYCGAG----SVSDIMRLRKKTL-SEDEIATILCDTLKGLEYLHL----RRKIHRDIKAGSGTLVYDRLDYCSI   91 (251)
Q Consensus        21 ~~~lv~e~~~~g----sL~~~~~~~~~~l-~~~~~~~~~~~i~~~l~~LH~----~~iiH~dik~~Ni~~~~~~~~~~~~   91 (251)
                      ...+|++.+.+.    ++....+  .+-. -.+-++.++.||+.-.-...+    .+.+|-||||.|||+.=++.     
T Consensus       249 GnIIIfPLArcSadkv~~~~~~e--~GF~s~~~YikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~-----  321 (444)
T PHA03111        249 GNIIIFPLARCSADKVTEENAAE--LGFKSLVEYIKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSDE-----  321 (444)
T ss_pred             CcEEEEehhhcccccCCHHHHHH--cCCccHHHHHHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCCC-----
Confidence            357888886442    2212211  1211 234456677788665433322    46899999999998872210     


Q ss_pred             cccccchhhhhhhhhcccCceecCCCCCeEeccccccccc
Q psy3253          92 KCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL  131 (251)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~  131 (251)
                                +.....+-.++...+--.++|-||.++...
T Consensus       322 ----------~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~  351 (444)
T PHA03111        322 ----------PISITLKDATYVFNEPIKACLNDFDFSQVA  351 (444)
T ss_pred             ----------cEEEEECCeEEEeccchhhhhcccCHHHHc
Confidence                      000001122344444445788899888543

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=87.40  E-value=0.59  Score=40.26  Aligned_cols=95  Identities=12%  Similarity=0.085  Sum_probs=47.6

Q ss_pred             EEEEEEccCCC--CHHHHHHHhCCCC--CHHHHHHHHHHHHHHHH---HHH-hCCccccCCCCCCCCccccccccccccc
Q psy3253          22 LWIVMEYCGAG--SVSDIMRLRKKTL--SEDEIATILCDTLKGLE---YLH-LRRKIHRDIKAGSGTLVYDRLDYCSIKC   93 (251)
Q Consensus        22 ~~lv~e~~~~g--sL~~~~~~~~~~l--~~~~~~~~~~~i~~~l~---~LH-~~~iiH~dik~~Ni~~~~~~~~~~~~~~   93 (251)
                      ..+|++.+.+.  .+..-.. ..-++  -.+-++.++.|++.-.-   .|- ..+.+|-||||.|||+.=+.-       
T Consensus       246 nIIIfPLA~~Sadkv~~~~~-~e~GF~s~~~YvkfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~-------  317 (434)
T PF05445_consen  246 NIIIFPLARCSADKVTESNA-AELGFKSNVEYVKFIFLQIALLYIKIYELPCCTNFLHVDLKPDNILIFDSKE-------  317 (434)
T ss_pred             cEEEEehhhcchhhcCHHHH-HhcCchhHHHHHHHHHHHHHHHHeeeecCCCcceeeecccCcCcEEEecCCC-------
Confidence            46888886442  1111111 11122  22344556666654321   122 346899999999998872210       


Q ss_pred             cccchhhhhhhhhcccCceecCCCCCeEecccccccccC
Q psy3253          94 NVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT  132 (251)
Q Consensus        94 ~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~  132 (251)
                              +.....+-.++...+--.++|-||.++...+
T Consensus       318 --------~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~~  348 (434)
T PF05445_consen  318 --------PIRIKFGNRNYVFKEPIRCCLNDFDFSQVAN  348 (434)
T ss_pred             --------ceEEEECCeEEEecccceeeecccCHHHhcc
Confidence                    0000011223344444457888999886443

; GO: 0004672 protein kinase activity, 0005524 ATP binding

>PRK10271 thiK thiamine kinase; Provisional

Probab=85.83  E-value=0.55  Score=36.82  Aligned_cols=21  Identities=38%  Similarity=0.711  Sum_probs=17.2

Q ss_pred             cCceecCCCCCeEecccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~~  130 (251)
                      |.|++++.++ ++++||+.+..
T Consensus        86 ~~N~~~~~~~-~~lIDwe~a~~  106 (188)
T PRK10271         86 AGNLVHSASG-LRLIDWEYAGD  106 (188)
T ss_pred             CccEEEECCC-EEEEeCCcccC
Confidence            7888887777 89999998854

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=85.69  E-value=0.42  Score=37.97  Aligned_cols=21  Identities=43%  Similarity=0.813  Sum_probs=14.0

Q ss_pred             cCceecC-CCCCeEeccccccc
Q psy3253         109 AGNILLN-TEGHAKLADFGVAG  129 (251)
Q Consensus       109 ~~nil~~-~~~~~kl~dfg~~~  129 (251)
                      +.||+++ .++.+.++||+.+.
T Consensus       175 ~~Nil~~~~~~~i~iID~e~a~  196 (239)
T PF01636_consen  175 PGNILVDPSDGRIGIIDFEDAG  196 (239)
T ss_dssp             GGGEEEESSTTEEEE--GTT-E
T ss_pred             cccceeeeccceeEEEecccce
Confidence            8899998 55656799998873

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=85.56  E-value=1.3  Score=36.81  Aligned_cols=22  Identities=41%  Similarity=0.620  Sum_probs=19.1

Q ss_pred             cCceecCCCCCeEecccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~~  130 (251)
                      |.|++.+..+.+.|+||..|..
T Consensus       162 ~~N~l~t~~~~l~LIDWEyAg~  183 (269)
T COG0510         162 PGNLLLTDKGGLFLIDWEYAGL  183 (269)
T ss_pred             ccceEEcCCCcEEEEecccCCC
Confidence            8888998888999999988853

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=84.83  E-value=1.5  Score=37.19  Aligned_cols=22  Identities=14%  Similarity=0.176  Sum_probs=18.9

Q ss_pred             cCceecCCCCCeEecccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~~  130 (251)
                      ++|++++.++.+.++||..++.
T Consensus       205 ~~Nvl~~~~~~~~iIDfd~~~~  226 (309)
T TIGR02904       205 LSHFLYDETRGGYFINFEKASF  226 (309)
T ss_pred             HHhEEEcCCCCEEEEEhhhccc
Confidence            8899998888899999988843

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=83.74  E-value=1.5  Score=37.65  Aligned_cols=21  Identities=29%  Similarity=0.582  Sum_probs=16.2

Q ss_pred             cCceecCCCCC-eEeccccccc
Q psy3253         109 AGNILLNTEGH-AKLADFGVAG  129 (251)
Q Consensus       109 ~~nil~~~~~~-~kl~dfg~~~  129 (251)
                      |.||+++.+.. ..++||+-+.
T Consensus       206 ~~NVl~d~~~~~~g~iDFdDa~  227 (331)
T COG2334         206 PDNVLFDDDTDVSGFIDFDDAG  227 (331)
T ss_pred             ccceeEcCCCCeeeEEEccccc
Confidence            77778777664 7899999874

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=82.66  E-value=0.84  Score=36.26  Aligned_cols=21  Identities=57%  Similarity=0.958  Sum_probs=15.7

Q ss_pred             cCceec-CCCCCeEeccccccc
Q psy3253         109 AGNILL-NTEGHAKLADFGVAG  129 (251)
Q Consensus       109 ~~nil~-~~~~~~kl~dfg~~~  129 (251)
                      +.||++ ..++.++++||..|.
T Consensus       152 ~~Nil~~~~~~~~~lIDfEya~  173 (211)
T PF01633_consen  152 PGNILINNKDGEVKLIDFEYAG  173 (211)
T ss_dssp             GGGEEETSSSSCEEE--GTT-E
T ss_pred             cccEEeccCCCeEEEecHHHHh
Confidence            889999 788899999999883

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>TIGR02721 ycfN_thiK thiamine kinase

Probab=82.65  E-value=0.83  Score=37.46  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=16.8

Q ss_pred             cCceecCCCCCeEecccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~~  130 (251)
                      |.|++++.++ +.++||+.+..
T Consensus       155 ~~Nil~~~~~-~~lIDwE~a~~  175 (256)
T TIGR02721       155 AYNLVVTPQG-LKLIDWEYASD  175 (256)
T ss_pred             cCcEEEeCCC-CEEEeccccCc
Confidence            7888887766 78999998853

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=81.92  E-value=3.3  Score=32.41  Aligned_cols=67  Identities=21%  Similarity=0.211  Sum_probs=43.5

Q ss_pred             EEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhh
Q psy3253          23 WIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK  102 (251)
Q Consensus        23 ~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~  102 (251)
                      .+.|||.+|..|...-.   . .+..    -+..++..-.-|-..||-|+.++                           
T Consensus        88 ~i~me~i~G~~L~~~~~---~-~~rk----~l~~vlE~a~~LD~~GI~H~El~---------------------------  132 (201)
T COG2112          88 FIRMEYIDGRPLGKLEI---G-GDRK----HLLRVLEKAYKLDRLGIEHGELS---------------------------  132 (201)
T ss_pred             hhhhhhhcCcchhhhhh---c-ccHH----HHHHHHHHHHHHHHhccchhhhc---------------------------
Confidence            35599999888866542   1 1222    23345565555777899999976                           


Q ss_pred             hhhhcccCceecCCCCCeEeccccccc
Q psy3253         103 TLFRLKAGNILLNTEGHAKLADFGVAG  129 (251)
Q Consensus       103 ~~~~~~~~nil~~~~~~~kl~dfg~~~  129 (251)
                          --..|+++... .+.|+||..|.
T Consensus       133 ----~~~k~vlv~~~-~~~iIDFd~At  154 (201)
T COG2112         133 ----RPWKNVLVNDR-DVYIIDFDSAT  154 (201)
T ss_pred             ----CCceeEEecCC-cEEEEEccchh
Confidence                21345555544 79999999885

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=81.86  E-value=3  Score=32.76  Aligned_cols=16  Identities=19%  Similarity=0.030  Sum_probs=11.4

Q ss_pred             CCccccCCCCCCCCcc
Q psy3253          67 RRKIHRDIKAGSGTLV   82 (251)
Q Consensus        67 ~~iiH~dik~~Ni~~~   82 (251)
                      ..++|||+.+.|+|+.
T Consensus       120 ~vl~HgD~~~~N~~~~  135 (196)
T smart00587      120 NVLNHGDLWANNIMFK  135 (196)
T ss_pred             eEEeeCCCCccceeec
Confidence            3579999996655555

subfamily of choline kinases

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=81.84  E-value=1.4  Score=35.76  Aligned_cols=38  Identities=29%  Similarity=0.330  Sum_probs=30.9

Q ss_pred             HHHHHHHHh--CCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccc
Q psy3253          58 LKGLEYLHL--RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA  128 (251)
Q Consensus        58 ~~~l~~LH~--~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~  128 (251)
                      +.+|.-.|+  .+.+|||-.                                 |+||+-++.|.+||.|-+.-
T Consensus       151 i~~L~~fH~~~~~~lHGD~n---------------------------------p~NiM~D~~G~lKlVDP~~L  190 (308)
T PF07387_consen  151 IKDLMDFHSENQHCLHGDCN---------------------------------PDNIMCDKFGYLKLVDPVCL  190 (308)
T ss_pred             HHHHHHhhccCCCeecCCCC---------------------------------hhheeecCCCCEEecChhhh
Confidence            355777884  468999965                                 99999999999999997654

The function of this family is unknown.

>KOG2270|consensus

Probab=81.45  E-value=2.8  Score=36.73  Aligned_cols=76  Identities=20%  Similarity=0.275  Sum_probs=51.8

Q ss_pred             EEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCCCccccccccccccccccchhh
Q psy3253          22 LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQI  100 (251)
Q Consensus        22 ~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~  100 (251)
                      -+|||+|+.. +=+-.-......++...+..+-.+++.-+.-|.+ .+++|.||+                         
T Consensus       239 hVLVM~FlGr-dgw~aPkLKd~~ls~~ka~~~Y~~~v~~MR~lY~~c~LVHADLS-------------------------  292 (520)
T KOG2270|consen  239 HVLVMEFLGR-DGWAAPKLKDASLSTSKARELYQQCVRIMRRLYQKCRLVHADLS-------------------------  292 (520)
T ss_pred             ceEeeeeccC-CCCcCcccccccCChHHHHHHHHHHHHHHHHHHHHhceeccchh-------------------------
Confidence            4799999943 2221112234567777788877777777776654 699999977                         


Q ss_pred             hhhhhhcccCceecCCCCCeEecccccccccC
Q psy3253         101 YKTLFRLKAGNILLNTEGHAKLADFGVAGQLT  132 (251)
Q Consensus       101 ~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~  132 (251)
                              --|++.- +|.+.++|-+.+....
T Consensus       293 --------EfN~Lyh-dG~lyiIDVSQSVE~D  315 (520)
T KOG2270|consen  293 --------EFNLLYH-DGKLYIIDVSQSVEHD  315 (520)
T ss_pred             --------hhhheEE-CCEEEEEEccccccCC
Confidence                    6676654 4668999988875443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		1e-101
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		6e-64
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		7e-64
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		8e-64
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		1e-63
3a7f_A	303	Human Mst3 Kinase Length = 303		3e-63
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		3e-63
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		8e-49
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		6e-48
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		7e-48
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		3e-47
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		1e-46
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		2e-46
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		8e-46
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		2e-45
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		6e-45
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		1e-44
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		1e-44
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		1e-44
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		1e-41
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		1e-41
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		1e-41
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		3e-40
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		3e-40
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		1e-38
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		1e-38
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		1e-38
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		1e-38
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		2e-38
4fie_A	423	Full-Length Human Pak4 Length = 423		2e-38
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		3e-38
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		2e-37
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		2e-36
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		3e-36
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		2e-33
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-33
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		2e-33
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		2e-33
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-33
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		3e-33
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		4e-33
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		3e-28
3fme_A	290	Crystal Structure Of Human Mitogen-Activated Protei		6e-28
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		3e-26
3enm_A	316	The Structure Of The Map2k Mek6 Reveals An Autoinhi		3e-25
2clq_A	295	Structure Of Mitogen-Activated Protein Kinase Kinas		8e-24
3vw6_A	269	Crystal Structure Of Human Apoptosis Signal-Regulat		1e-23
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		5e-23
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		1e-21
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		4e-21
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		9e-21
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		1e-20
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		1e-20
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		1e-20
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-20
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-20
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		2e-20
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		2e-20
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-20
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		2e-20
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		2e-20
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		2e-20
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		2e-20
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		2e-20
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		2e-20
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		2e-20
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		2e-20
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		3e-20
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		3e-20
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		3e-20
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		3e-20
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		4e-20
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		4e-20
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		5e-20
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		7e-20
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		8e-20
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		1e-19
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		1e-19
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		1e-19
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		1e-19
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		1e-19
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		1e-19
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-19
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		1e-19
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		1e-19
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-19
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		1e-19
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		1e-19
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		1e-19
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		2e-19
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		3e-19
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		4e-19
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		5e-19
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		2e-18
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		2e-18
3gni_B	389	Structure Of Strad And Mo25 Length = 389		2e-18
2wtk_B	373	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		2e-18
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		2e-18
3f3z_A	277	Crystal Structure Of Cryptosporidium Parvum Calcium		3e-18
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		3e-18
2qg5_A	294	Cryptosporidium Parvum Calcium Dependent Protein Ki		3e-18
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		2e-17
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		6e-17
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		7e-17
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		7e-17
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		8e-17
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		8e-17
2ya9_A	361	Crystal Structure Of The Autoinhibited Form Of Mous		8e-17
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		3e-16
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		3e-16
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		3e-16
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		3e-16
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		3e-16
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		3e-16
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		4e-16
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		4e-16
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		4e-16
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		4e-16
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		5e-16
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		5e-16
3g51_A	325	Structural Diversity Of The Active Conformation Of		6e-16
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		6e-16
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		7e-16
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		7e-16
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		8e-16
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		9e-16
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		9e-16
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		9e-16
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		9e-16
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		9e-16
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		9e-16
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		9e-16
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		9e-16
1zws_A	288	Crystal Structure Of The Catalytic Domain Of Human		9e-16
2a2a_A	321	High-resolution Crystallographic Analysis Of The Au		9e-16
1z9x_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		1e-15
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		1e-15
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		1e-15
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		1e-15
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		1e-15
1wmk_A	321	Human Death-Associated Kinase Drp-1, Mutant S308d D		1e-15
2a27_A	321	Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal		1e-15
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		1e-15
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		1e-15
4ae6_A	343	Structure And Function Of The Human Sperm-specific		2e-15
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		2e-15
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		2e-15
4g3d_A	371	Crystal Structure Of Human Nf-kappab Inducing Kinas		2e-15
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		2e-15
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		2e-15
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		2e-15
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		2e-15
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		2e-15
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		2e-15
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		2e-15
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		2e-15
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-15
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		2e-15
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		2e-15
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		2e-15
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		2e-15
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		2e-15
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		2e-15
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		2e-15
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		3e-15
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		3e-15
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		3e-15
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		3e-15
2j90_A	304	Crystal Structure Of Human Zip Kinase In Complex Wi		3e-15
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		3e-15
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		3e-15
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		3e-15
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		3e-15
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		3e-15
4dn5_A	356	Crystal Structure Of Nf-kb-inducing Kinase (nik) Le		3e-15
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		3e-15
1yrp_A	278	Catalytic Domain Of Human Zip Kinase Phosphorylated		3e-15
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		4e-15
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		4e-15
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		4e-15
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		4e-15
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		4e-15
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		4e-15
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		4e-15
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		5e-15
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		5e-15
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		5e-15
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		5e-15
4ae9_A	343	Structure And Function Of The Human Sperm-specific		5e-15
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		5e-15
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		5e-15
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		6e-15
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		6e-15
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		6e-15
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		6e-15
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		6e-15
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		6e-15
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		6e-15
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		6e-15
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		6e-15
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		6e-15
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		7e-15
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		7e-15
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		7e-15
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		7e-15
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		7e-15
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		7e-15
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		7e-15
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		7e-15
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		7e-15
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		7e-15
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		8e-15
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		8e-15
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		8e-15
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		8e-15
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		8e-15
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		9e-15
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		1e-14
2xuu_A	334	Crystal Structure Of A Dap-Kinase 1 Mutant Length =		2e-14
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		2e-14
2yak_A	285	Structure Of Death-Associated Protein Kinase 1 (Dap		2e-14
2w4k_A	302	X-Ray Structure Of A Dap-Kinase 2-302 Length = 302		2e-14
2y0a_A	326	Structure Of Dapk1 Construct Residues 1-304 Length		2e-14
2xzs_A	312	Death Associated Protein Kinase 1 Residues 1-312 Le		2e-14
3f5u_A	295	Crystal Structure Of The Death Associated Protein K		2e-14
3dfc_B	295	Crystal Structure Of A Glycine-Rich Loop Mutant Of		2e-14
1ig1_A	294	1.8a X-Ray Structure Of Ternary Complex Of A Cataly		2e-14
3gu4_A	295	Crystal Structure Of Dapkq23v-Amppnp Length = 295		2e-14
2x0g_A	334	X-ray Structure Of A Dap-kinase Calmodulin Complex		2e-14
1p4f_A	293	Death Associated Protein Kinase Catalytic Domain Wi		2e-14
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		3e-14
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		3e-14
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		3e-14
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		3e-14
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		4e-14
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		4e-14
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		7e-14
3gu8_A	295	Crystal Structure Of Dapkl93g With N6-Cyclopentylad		7e-14
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		8e-14
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		1e-13
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		1e-13
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		1e-13
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		1e-13
2w4j_A	277	X-Ray Structure Of A Dap-Kinase 2-277 Length = 277		1e-13
1wvw_A	278	Crystal Structures Of Kinase Domain Of Dap Kinase I		1e-13
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		1e-13
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		1e-13
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		1e-13
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		2e-13
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		2e-13
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		2e-13
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		2e-13
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		2e-13
3fpq_A	290	Crystal Structure Of The Kinase Domain Of Wnk1 Leng		3e-13
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		3e-13
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		4e-13
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		4e-13
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		4e-13
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		4e-13
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		4e-13
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		4e-13
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		5e-13
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		5e-13
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		6e-13
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		6e-13
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		6e-13
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		6e-13
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		6e-13
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		7e-13
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		7e-13
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		7e-13
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		7e-13
3udb_A	317	Crystal Structure Of Snrk2.6 Length = 317		7e-13
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		7e-13
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		8e-13
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		8e-13
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		8e-13
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		8e-13
2qr7_A	342	2.0a X-Ray Structure Of C-Terminal Kinase Domain Of		8e-13
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		8e-13
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		8e-13
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		8e-13
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		8e-13
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		8e-13
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		9e-13
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		9e-13
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		9e-13
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		9e-13
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		9e-13
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		1e-12
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		1e-12
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		1e-12
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		1e-12
2j0j_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		1e-12
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		1e-12
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		1e-12
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		1e-12
3soa_A	444	Full-Length Human Camkii Length = 444		1e-12
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		2e-12
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		2e-12
3gok_A	334	Binding Site Mapping Of Protein Ligands Length = 33		2e-12
2jbo_A	326	Protein Kinase Mk2 In Complex With An Inhibitor (Cr		2e-12
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		2e-12
2pzy_A	324	Structure Of Mk2 Complexed With Compound 76 Length		2e-12
1kwp_A	400	Crystal Structure Of Mapkap2 Length = 400		2e-12
3fpm_A	325	Crystal Structure Of A Squarate Inhibitor Bound To		2e-12
2onl_C	406	Crystal Structure Of The P38a-Mapkap Kinase 2 Heter		2e-12
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		2e-12
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		2e-12
2p3g_X	327	Crystal Structure Of A Pyrrolopyridine Inhibitor Bo		2e-12
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		2e-12
3r2b_A	318	Mk2 Kinase Bound To Compound 5b Length = 318		2e-12
3r2y_A	319	Mk2 Kinase Bound To Compound 1 Length = 319		2e-12
2f2u_A	402	Crystal Structure Of The Rho-Kinase Kinase Domain L		2e-12
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-12
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-12
2oza_A	356	Structure Of P38alpha Complex Length = 356		2e-12
2j0k_A	656	Crystal Structure Of A Fragment Of Focal Adhesion K		2e-12
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		3e-12
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		3e-12
3uc4_A	362	The Crystal Structure Of Snf1-Related Kinase 2.6 Le		3e-12
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		3e-12
3mfr_A	351	Cask-4m Cam Kinase Domain, Native Length = 351		4e-12
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		4e-12
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		4e-12
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		4e-12
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		4e-12
3ujg_A	361	Crystal Structure Of Snrk2.6 In Complex With Hab1 L		4e-12
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		4e-12
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		4e-12
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		5e-12
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		5e-12
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		5e-12
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		6e-12
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		6e-12
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		6e-12
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		6e-12
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		6e-12
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		6e-12
3ka0_A	320	Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4		7e-12
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		7e-12
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		8e-12
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		8e-12
2esm_A	415	Crystal Structure Of Rock 1 Bound To Fasudil Length		9e-12
3v8s_A	410	Human Rho-Associated Protein Kinase 1 (Rock 1) In C		9e-12
2v55_A	406	Mechanism Of Multi-site Phosphorylation From A Rock		9e-12
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		9e-12
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-11
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		1e-11
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		1e-11
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		1e-11
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-11
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		1e-11
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-11
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		2e-11
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		2e-11
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		2e-11
3zuu_A	362	The Structure Of Ost1 (D160a, S175d) Kinase In Comp		3e-11
3tac_A	361	Crystal Structure Of The Liprin-AlphaCASK COMPLEX L		3e-11
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		3e-11
3zut_A	362	The Structure Of Ost1 (D160a) Kinase Length = 362		3e-11
3c0g_A	351	Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Len		3e-11
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		4e-11
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		4e-11
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		4e-11
3dbq_A	343	Crystal Structure Of Ttk Kinase Domain Length = 343		5e-11
3uc3_A	361	The Crystal Structure Of Snf1-Related Kinase 2.3 Le		5e-11
2x9e_A	317	Human Mps1 In Complex With Nms-P715 Length = 317		5e-11
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		5e-11
3cek_A	313	Crystal Structure Of Human Dual Specificity Protein		5e-11
3vqu_A	320	Crystal Structure Of Human Mps1 Catalytic Domain In		5e-11
4g3g_A	350	Crystal Structure Of Murine Nf-kappab Inducing Kina		6e-11
4g3f_A	336	Crystal Structure Of Murine Nf-kappab Inducing Kina		7e-11
2zmc_A	390	Crystal Structure Of Human Mitotic Checkpoint Kinas		7e-11
3hmn_A	342	Crystal Structure Of Human Mps1 Catalytic Domain In		7e-11
4g3c_A	352	Crystal Structure Of Apo Murine Nf-kappab Inducing		7e-11
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		9e-11
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		1e-10
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		1e-10
4dym_A	301	Crystal Structure Of The Acvr1 Kinase Domain In Com		1e-10
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		1e-10
3mtf_A	301	Crystal Structure Of The Acvr1 Kinase In Complex Wi		1e-10
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-10
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		2e-10
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		2e-10
3h9f_A	313	Crystal Structure Of Human Dual Specificity Protein		2e-10
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		2e-10
3h9r_A	330	Crystal Structure Of The Kinase Domain Of Type I Ac		2e-10
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		2e-10
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		2e-10
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		2e-10
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		2e-10
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		2e-10
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		2e-10
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		2e-10
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		2e-10
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		2e-10
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		2e-10
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		2e-10
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		2e-10
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		2e-10
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		2e-10
3kk9_A	282	Camkii Substrate Complex B Length = 282		2e-10
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		2e-10
3kk8_A	284	Camkii Substrate Complex A Length = 284		2e-10
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		2e-10
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		2e-10
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		2e-10
2zmd_A	390	Crystal Structure Of Human Mps1 Catalytic Domain T6		2e-10
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		3e-10
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		3e-10
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-10
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		4e-10
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		4e-10
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		4e-10
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		4e-10
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		5e-10
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		5e-10
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		5e-10
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		5e-10
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		5e-10
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		6e-10
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		6e-10
1nxk_A	400	Crystal Structure Of Staurosporine Bound To Map Kap		6e-10
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		6e-10
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		6e-10
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		6e-10
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		6e-10
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		6e-10
3fhr_A	336	High Resolution Crystal Structure Of Mitogen-Activa		6e-10
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		6e-10
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		6e-10
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		7e-10
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		7e-10
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		7e-10
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		7e-10
3hec_A	348	P38 In Complex With Imatinib Length = 348		7e-10
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		7e-10
3r1n_A	317	Mk3 Kinase Bound To Compound 5b Length = 317		7e-10
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		8e-10
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		8e-10
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		8e-10
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		8e-10
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		8e-10
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		8e-10
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		8e-10
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		8e-10
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		8e-10
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		8e-10
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		8e-10
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		8e-10
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		8e-10
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		8e-10
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		8e-10
3vid_A	356	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		8e-10
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		8e-10
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		8e-10
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		8e-10
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		8e-10
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		8e-10
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		8e-10
3vhe_A	359	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		9e-10
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		9e-10
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		9e-10
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		9e-10
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		9e-10
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		9e-10
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		9e-10
1y6a_A	366	Crystal Structure Of Vegfr2 In Complex With A 2-Ani		9e-10
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		9e-10
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		9e-10
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		9e-10
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		9e-10
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		9e-10
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		9e-10
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		9e-10
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		9e-10
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		9e-10
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		9e-10
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		9e-10
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		9e-10
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		9e-10
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		9e-10
2oza_B	366	Structure Of P38alpha Complex Length = 366		9e-10
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		9e-10
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		1e-09
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		1e-09
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		1e-09
3vhk_A	368	Crystal Structure Of The Vegfr2 Kinase Domain In Co		1e-09
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		1e-09
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-09
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		1e-09
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		1e-09
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		1e-09
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		1e-09
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		1e-09
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		1e-09
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		1e-09
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		1e-09
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		1e-09
1kob_A	387	Twitchin Kinase Fragment (Aplysia), Autoregulated P		1e-09
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		1e-09
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		1e-09
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		1e-09
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		1e-09
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		2e-09
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		2e-09
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		2e-09
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-09
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		2e-09
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		2e-09
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		2e-09
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-09
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		2e-09
3ug1_A	334	Crystal Structure Of The Mutated Egfr Kinase Domain		2e-09
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		2e-09
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		2e-09
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-09
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		2e-09
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		2e-09
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		2e-09
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		2e-09
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		2e-09
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-09
4h58_A	275	Braf In Complex With Compound 3 Length = 275		2e-09
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		2e-09
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		2e-09
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		2e-09
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		2e-09
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		3e-09
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		3e-09
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		3e-09
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		3e-09
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		3e-09
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		3e-09
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		3e-09
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		4e-09
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		4e-09
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		4e-09
3llt_A	360	Crystal Structure Of Pf14_0431, Kinase Domain Lengt		4e-09
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		4e-09
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-09
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		4e-09
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		4e-09
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		5e-09
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		5e-09
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		5e-09
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		5e-09
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		5e-09
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		5e-09
2h34_A	309	Apoenzyme Crystal Structure Of The Tuberculosis Ser		6e-09
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		6e-09
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		6e-09
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		6e-09
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		6e-09
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		6e-09
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		6e-09
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		6e-09
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		6e-09
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-09
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		7e-09
3hng_A	360	Crystal Structure Of Vegfr1 In Complex With N-(4-ch		7e-09
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		8e-09
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		8e-09
3a4o_X	286	Lyn Kinase Domain Length = 286		8e-09
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		8e-09
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		8e-09
4exu_A	371	Mapk13, Inactive Form Length = 371		9e-09
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		9e-09
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		9e-09
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		9e-09
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		9e-09
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		9e-09
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		1e-08
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		1e-08
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		1e-08
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		1e-08
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		1e-08
2hw6_A	307	Crystal Structure Of Mnk1 Catalytic Domain Length =		1e-08
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		1e-08
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		1e-08
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		1e-08
2eb2_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (G7		1e-08
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		1e-08
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		1e-08
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		1e-08
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		1e-08
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		1e-08
2itn_A	327	Crystal Structure Of Egfr Kinase Domain G719s Mutat		1e-08
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		1e-08
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		1e-08
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		1e-08
3fzo_A	277	Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosin		1e-08
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		1e-08
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		1e-08
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		1e-08
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		1e-08
4h1j_A	293	Crystal Structure Of Pyk2 With The Pyrazole 13a Len		1e-08
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		1e-08
4fl3_A	635	Structural And Biophysical Characterization Of The		1e-08
3p1a_A	311	Structure Of Human Membrane-Associated Tyrosine- An		1e-08
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		1e-08
3cc6_A	281	Crystal Structure Of Kinase Domain Of Protein Tyros		1e-08
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		1e-08
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		1e-08
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		1e-08
4fl2_A	636	Structural And Biophysical Characterization Of The		2e-08
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-08
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		2e-08
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		2e-08
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		2e-08
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		2e-08
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		2e-08
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		2e-08
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-08
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		2e-08
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		2e-08
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		2e-08
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		2e-08
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		2e-08
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		2e-08
2wtk_C	305	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		2e-08
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		2e-08
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-08
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		2e-08
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		2e-08
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		2e-08
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		2e-08
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		2e-08
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		2e-08
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		2e-08
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		2e-08
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		2e-08
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		2e-08
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		2e-08
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		2e-08
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		2e-08
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		2e-08
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		2e-08
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		2e-08
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		2e-08
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		2e-08
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		2e-08
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		2e-08
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		3e-08
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		3e-08
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		3e-08
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		3e-08
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		3e-08
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		3e-08
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		3e-08
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		3e-08
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		3e-08
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		3e-08
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		3e-08
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		3e-08
3b2t_A	311	Structure Of Phosphotransferase Length = 311		3e-08
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		3e-08
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		4e-08
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		4e-08
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		4e-08
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-08
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		4e-08
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		4e-08
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		4e-08
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		4e-08
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-08
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		4e-08
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		5e-08
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		5e-08
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		5e-08
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		5e-08
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		5e-08
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		5e-08
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		5e-08
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		5e-08
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		5e-08
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		5e-08
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		5e-08
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		6e-08
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		6e-08
2z2w_A	285	Humand Wee1 Kinase Complexed With Inhibitor Pf03357		6e-08
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		6e-08
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		6e-08
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		6e-08
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		6e-08
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		6e-08
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		6e-08
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		6e-08
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		6e-08
1tki_A	321	Autoinhibited Serine Kinase Domain Of The Giant Mus		6e-08
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		7e-08
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		7e-08
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		7e-08
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		7e-08
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		7e-08
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		7e-08
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		7e-08
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		7e-08
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		7e-08
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		7e-08
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		7e-08
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-08
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		7e-08
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		8e-08
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		8e-08
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		9e-08
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		9e-08
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		9e-08
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		1e-07
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		1e-07
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		1e-07
3bi6_A	287	Wee1 Kinase Complex With Inhibitor Pd352396 Length		1e-07
2in6_A	287	Wee1 Kinase Complex With Inhibitor Pd311839 Length		1e-07
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		1e-07
1x8b_A	289	Structure Of Human Wee1a Kinase: Kinase Domain Comp		1e-07
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		1e-07
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		1e-07
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		1e-07
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		1e-07
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		1e-07
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		1e-07
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		1e-07
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		1e-07
1fvr_A	327	Tie2 Kinase Domain Length = 327		1e-07
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		1e-07
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		1e-07
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		2e-07
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		2e-07
2pl0_A	289	Lck Bound To Imatinib Length = 289		2e-07
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		2e-07
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		2e-07
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		2e-07
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		2e-07
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		2e-07
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-07
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		2e-07
3p23_A	432	Crystal Structure Of The Human Kinase And Rnase Dom		2e-07
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		2e-07
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		2e-07
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		2e-07
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		2e-07
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		2e-07
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		2e-07
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		2e-07
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-07
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		3e-07
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		3e-07
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		3e-07
3fbv_A	448	Crystal Structure Of The Oligomer Formed By The Kin		3e-07
3sdj_A	448	Structure Of Rnase-Inactive Point Mutant Of Oligome		3e-07
2ac5_A	316	Structure Of Human Mnk2 Kinase Domain Mutant D228g		3e-07
3mdy_A	337	Crystal Structure Of The Cytoplasmic Domain Of The		3e-07
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		3e-07
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		4e-07
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		4e-07
2rio_A	434	Structure Of The Dual Enzyme Ire1 Reveals The Basis		4e-07
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		4e-07
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		4e-07
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		5e-07
3hko_A	345	Crystal Structure Of A Cdpk Kinase Domain From Cryp		5e-07
2i6l_A	320	Crystal Structure Of Human Mitogen Activated Protei		5e-07
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		5e-07
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		6e-07
3my0_A	305	Crystal Structure Of The Acvrl1 (Alk1) Kinase Domai		6e-07
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		6e-07
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		6e-07
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		6e-07
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		6e-07
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		7e-07
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		7e-07
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		7e-07
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		7e-07
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		7e-07
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		7e-07
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		7e-07
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		7e-07
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		7e-07
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		7e-07
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		8e-07
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		9e-07
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		9e-07
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		9e-07
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		9e-07
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		9e-07
2vx3_A	382	Crystal Structure Of The Human Dual Specificity Tyr		1e-06
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		1e-06
3kga_A	299	Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexe		1e-06
4aze_A	382	Human Dyrk1a In Complex With Leucettine L41 Length		1e-06
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		1e-06
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		1e-06
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		1e-06
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		1e-06
3anq_A	368	Human Dyrk1aINHIBITOR COMPLEX Length = 368		1e-06
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		1e-06
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-06
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		1e-06
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-06
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		1e-06
3lj0_A	434	Ire1 Complexed With Adp And Quercetin Length = 434		1e-06
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		1e-06
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		1e-06
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		1e-06
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		1e-06
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-06
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		1e-06
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		1e-06
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		1e-06
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		2e-06
3kex_A	325	Crystal Structure Of The Catalytically Inactive Kin		2e-06
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		2e-06
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		2e-06
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		2e-06
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		2e-06
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-06
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		2e-06
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		2e-06
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		2e-06
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		2e-06
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-06
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		2e-06
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		2e-06
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		2e-06
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		2e-06
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		2e-06
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		2e-06
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		2e-06
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-06
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		2e-06
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		2e-06
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		2e-06
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		2e-06
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		2e-06
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		2e-06
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		2e-06
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		2e-06
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		2e-06
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		2e-06
3lmg_A	344	Crystal Structure Of The Erbb3 Kinase Domain In Com		2e-06
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		2e-06
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		2e-06
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		2e-06
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		2e-06
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		2e-06
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		2e-06
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		2e-06
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		2e-06
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		2e-06
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		2e-06
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		2e-06
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-06
2ac3_A	316	Structure Of Human Mnk2 Kinase Domain Length = 316		2e-06
4ewh_B	275	Co-Crystal Structure Of Ack1 With Inhibitor Length		3e-06
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		3e-06
1u54_A	291	Crystal Structures Of The Phosphorylated And Unphos		3e-06
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		3e-06
4hzr_A	277	Crystal Structure Of Ack1 Kinase Domain Length = 27		3e-06
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		3e-06
4hzs_A	341	Crystal Structure Of Ack1 Kinase Domain With C-term		3e-06
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		3e-06
4id7_A	273	Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-		3e-06
1u46_A	291	Crystal Structure Of The Unphosphorylated Kinase Do		3e-06
3eqp_B	276	Crystal Structure Of Ack1 With Compound T95 Length		3e-06
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		3e-06
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		4e-06
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		4e-06
3n9x_A	432	Crystal Structure Of Map Kinase From Plasmodium Ber		4e-06
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		4e-06
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		4e-06
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		4e-06
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		4e-06
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		4e-06
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		4e-06
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		4e-06
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		5e-06
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		5e-06
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		5e-06
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		5e-06
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		7e-06
2buj_A	317	Crystal Structure Of The Human Serine-Threonine Kin		7e-06
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		7e-06
3g0f_A	336	Kit Kinase Domain Mutant D816h In Complex With Suni		8e-06
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		8e-06
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		9e-06
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		9e-06
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		1e-05
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		1e-05
1t45_A	331	Structural Basis For The Autoinhibition And Sti-571		1e-05
1t46_A	313	Structural Basis For The Autoinhibition And Sti-571		1e-05
3g0e_A	336	Kit Kinase Domain In Complex With Sunitinib Length		1e-05
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		1e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		1e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		1e-05
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		1e-05
3ll6_A	337	Crystal Structure Of The Human Cyclin G Associated		1e-05
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		1e-05
1pkg_A	329	Structure Of A C-kit Kinase Product Complex Length		1e-05
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		1e-05
4eut_A	396	Structure Of Bx-795 Complexed With Unphosphorylated		1e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		2e-05
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		2e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		2e-05
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		2e-05
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		2e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		2e-05
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		2e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		2e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		2e-05
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		2e-05
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		3e-05
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		3e-05
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		3e-05
4euu_A	319	Structure Of Bx-795 Complexed With Human Tbk1 Kinas		3e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		3e-05
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		3e-05
1m2p_A	325	Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro- Anthra		4e-05
4dgm_A	326	Crystal Structure Of Maize Ck2 In Complex With The		4e-05
1daw_A	327	Crystal Structure Of A Binary Complex Of Protein Ki		4e-05
3kxg_A	327	Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subun		4e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		4e-05
4dgn_A	326	Crystal Structure Of Maize Ck2 In Complex With The		4e-05
1ds5_A	332	Dimeric Crystal Structure Of The Alpha Subunit In C		4e-05
4f99_A	361	Human Cdc7 Kinase In Complex With Dbf4 And Nucleoti		4e-05
4anm_A	335	Complex Of Ck2 With A Cdc7 Inhibitor Length = 335		4e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		4e-05
2qc6_A	332	Protein Kinase Ck2 In Complex With Dbc Length = 332		4e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		4e-05
2pvh_A	352	Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]tri		4e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		4e-05
3pvg_A	331	Crystal Structure Of Z. Mays Ck2 Alpha Subunit In C		4e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		5e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		5e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		5e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		5e-05
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		7e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-04
2y4i_B	319	Ksr2-Mek1 Heterodimer Length = 319		1e-04
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		1e-04
2iwi_A	312	Crystal Structure Of The Human Pim2 In Complex With		1e-04
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-04
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		1e-04
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		2e-04
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		2e-04
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		2e-04
4dgl_C	335	Crystal Structure Of The Ck2 Tetrameric Holoenzyme		2e-04
4dtk_A	276	Novel And Selective Pan-Pim Kinase Inhibitor Length		3e-04
3c4e_A	273	Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7		3e-04
1yxs_A	293	Crystal Structure Of Kinase Pim1 With P123m Mutatio		3e-04
1ywv_A	293	Crystal Structures Of Proto-Oncogene Kinase Pim1: A		3e-04
3jxw_A	294	Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-		3e-04
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		3e-04
3uix_A	298	Crystal Structure Of Pim1 Kinase In Complex With Sm		3e-04
1xqz_A	300	Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolut		4e-04
4alu_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		4e-04
1yhs_A	273	Crystal Structure Of Pim-1 Bound To Staurosporine L		4e-04
3r00_A	299	The Discovery Of Novel Benzofuran-2-Carboxylic Acid		4e-04
1xws_A	313	Crystal Structure Of The Human Pim1 Kinase Domain L		4e-04
2xj0_A	301	Protein Kinase Pim-1 In Complex With Fragment-4 Fro		4e-04
4alv_A	328	Benzofuropyrimidinone Inhibitors Of Pim-1 Length =		4e-04
3pg1_A	362	Map Kinase Lmampk10 From Leishmania Major (1.95 Ang		4e-04
3a99_A	320	Structure Of Pim-1 Kinase Crystallized In The Prese		4e-04
1vjy_A	303	Crystal Structure Of A Naphthyridine Inhibitor Of H		4e-04
2xiy_A	301	Protein Kinase Pim-1 In Complex With Fragment-2 Fro		4e-04
3f2a_A	300	Crystal Structure Of Human Pim-1 In Complex With Da		4e-04
1rw8_A	301	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		5e-04
3uib_A	362	Map Kinase Lmampk10 From Leishmania Major In Comple		5e-04
4a7c_A	308	Crystal Structure Of Pim1 Kinase With Etp46546 Leng		5e-04
3tzm_A	309	Tgf-Beta Receptor Type 1 In Complex With Sb431542 L		5e-04
2wot_A	306	Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)		5e-04
3juh_A	335	Crystal Structure Of A Mutant Of Human Protein Kina		5e-04
1b6c_B	342	Crystal Structure Of The Cytoplasmic Domain Of The		5e-04
2obj_A	333	Crystal Structure Of Human Pim-1 Kinase In Complex		5e-04
3dcv_A	328	Crystal Structure Of Human Pim1 Kinase Complexed Wi		6e-04
2xix_A	301	Protein Kinase Pim-1 In Complex With Fragment-1 Fro		6e-04
3mb6_A	331	Human Ck2 Catalytic Domain In Complex With A Difura		6e-04
3nsz_A	330	Human Ck2 Catalytic Domain In Complex With Amppn Le		6e-04
3nga_A	333	Human Ck2 Catalytic Domain In Complex With Cx-4945		6e-04
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		6e-04
3h30_A	334	Crystal Structure Of The Catalytic Subunit Of Human		6e-04
3bqc_A	335	High Ph-Value Crystal Structure Of Emodin In Comple		6e-04
1py5_A	326	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		6e-04
3q9w_A	336	Crystal Structure Of Human Ck2 Alpha In Complex Wit		6e-04
1pjk_A	334	Crystal Structure Of A C-terminal Deletion Mutant O		6e-04
1jwh_A	337	Crystal Structure Of Human Protein Kinase Ck2 Holoe		6e-04
3q04_A	328	Crystal Structure Of The Apo-Form Of Human Ck2 Alph		6e-04
2zjw_A	340	Crystal Structure Of Human Ck2 Alpha Complexed With		7e-04
2r7i_A	335	Crystal Structure Of Catalytic Subunit Of Protein K		7e-04
3u87_A	349	Structure Of A Chimeric Construct Of Human Ck2alpha		7e-04
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		7e-04
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		7e-04
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		8e-04
1na7_A	329	Crystal Structure Of The Catalytic Subunit Of Human		9e-04

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/239 (71%), Positives = 191/239 (79%), Gaps = 33/239 (13%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSP+VVKYYGSYFKNTDLWIVMEYCGAGSVSDI+RLR KTL+EDEIATIL  TLKG
Sbjct: 78  MQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKG 137
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH  RKIHRDIKAG                                 NILLNTEGHA
Sbjct: 138 LEYLHFMRKIHRDIKAG---------------------------------NILLNTEGHA 164
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTD MAKRN VIGTPFWMAPEVIQEIGY+CVAD+WSLGITA+EMAEGKPP
Sbjct: 165 KLADFGVAGQLTDXMAKRNXVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPP 224
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y DIHPMRAIFMIPT PPP+FR+P++W+  F DFV +CLVK+PE+RATA+++L H F++
Sbjct: 225 YADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVR 283

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score =  240 bits (612), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 120/241 (49%), Positives = 150/241 (62%), Gaps = 37/241 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + QCDSPYV KYYGSY K+T LWI+MEY G GS  D+  L    L E +IATIL + LKG
Sbjct: 79  LSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDL--LEPGPLDETQIATILREILKG 136
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  +KIHRDIKA                                  N+LL+  G  
Sbjct: 137 LDYLHSEKKIHRDIKAA---------------------------------NVLLSEHGEV 163
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDT  KRNT +GTPFWMAPEVI++  YD  AD+WSLGITA+E+A G+PP
Sbjct: 164 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 223
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           + ++HPM+ +F+IP   PP+      ++    +FV  CL K P  R TA E+L H+FI R
Sbjct: 224 HSELHPMKVLFLIPKNNPPTLE--GNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILR 281
Query: 241 H 241
           +
Sbjct: 282 N 282

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score =  239 bits (611), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 121/246 (49%), Positives = 152/246 (61%), Gaps = 37/246 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + QCDS YV KYYGSY K + LWI+MEY G GS  D+  LR     E +IAT+L + LKG
Sbjct: 75  LSQCDSSYVTKYYGSYLKGSKLWIIMEYLGGGSALDL--LRAGPFDEFQIATMLKEILKG 132
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  +KIHRDIKA                                  N+LL+ +G  
Sbjct: 133 LDYLHSEKKIHRDIKAA---------------------------------NVLLSEQGDV 159
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDT  KRNT +GTPFWMAPEVIQ+  YD  AD+WSLGITA+E+A+G+PP
Sbjct: 160 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPP 219
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
             D+HPMR +F+IP   PP+      +T  F +F+  CL K+P  R TA E+L H+FI +
Sbjct: 220 NSDMHPMRVLFLIPKNNPPTLVGD--FTKSFKEFIDACLNKDPSFRPTAKELLKHKFIVK 277
Query: 241 HDTDPS 246
           +    S
Sbjct: 278 NSKKTS 283

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score =  239 bits (611), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 120/241 (49%), Positives = 150/241 (62%), Gaps = 37/241 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + QCDSPYV KYYGSY K+T LWI+MEY G GS  D+  L    L E +IATIL + LKG
Sbjct: 59  LSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDL--LEPGPLDETQIATILREILKG 116
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  +KIHRDIKA                                  N+LL+  G  
Sbjct: 117 LDYLHSEKKIHRDIKAA---------------------------------NVLLSEHGEV 143
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDT  KRNT +GTPFWMAPEVI++  YD  AD+WSLGITA+E+A G+PP
Sbjct: 144 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 203
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           + ++HPM+ +F+IP   PP+      ++    +FV  CL K P  R TA E+L H+FI R
Sbjct: 204 HSELHPMKVLFLIPKNNPPTLE--GNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILR 261
Query: 241 H 241
           +
Sbjct: 262 N 262

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score =  239 bits (609), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 121/246 (49%), Positives = 152/246 (61%), Gaps = 37/246 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + QCDSPY+ +Y+GSY K+T LWI+MEY G GS  D+  L+   L E  IATIL + LKG
Sbjct: 71  LSQCDSPYITRYFGSYLKSTKLWIIMEYLGGGSALDL--LKPGPLEETYIATILREILKG 128
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  RKIHRDIKA                                  N+LL+ +G  
Sbjct: 129 LDYLHSERKIHRDIKAA---------------------------------NVLLSEQGDV 155
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDT  KRN  +GTPFWMAPEVI++  YD  AD+WSLGITA+E+A+G+PP
Sbjct: 156 KLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPP 215
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
             D+HPMR +F+IP   PP+       +  F +FV  CL K+P  R TA E+L H+FI R
Sbjct: 216 NSDLHPMRVLFLIPKNSPPTLEGQH--SKPFKEFVEACLNKDPRFRPTAKELLKHKFITR 273
Query: 241 HDTDPS 246
           +    S
Sbjct: 274 YTKKTS 279

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score =  238 bits (606), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 119/241 (49%), Positives = 149/241 (61%), Gaps = 37/241 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + QCDSPYV KYYGSY K+T LWI+MEY G GS  D+  L    L E +IATIL + LKG
Sbjct: 74  LSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDL--LEPGPLDETQIATILREILKG 131
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  +KIHRDIKA                                  N+LL+  G  
Sbjct: 132 LDYLHSEKKIHRDIKAA---------------------------------NVLLSEHGEV 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDT  KRN  +GTPFWMAPEVI++  YD  AD+WSLGITA+E+A G+PP
Sbjct: 159 KLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 218
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           + ++HPM+ +F+IP   PP+      ++    +FV  CL K P  R TA E+L H+FI R
Sbjct: 219 HSELHPMKVLFLIPKNNPPTLE--GNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILR 276
Query: 241 H 241
           +
Sbjct: 277 N 277

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score =  238 bits (606), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 119/241 (49%), Positives = 149/241 (61%), Gaps = 37/241 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + QCDSPYV KYYGSY K+T LWI+MEY G GS  D+  L    L E +IATIL + LKG
Sbjct: 59  LSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDL--LEPGPLDETQIATILREILKG 116
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  +KIHRDIKA                                  N+LL+  G  
Sbjct: 117 LDYLHSEKKIHRDIKAA---------------------------------NVLLSEHGEV 143
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDT  KRN  +GTPFWMAPEVI++  YD  AD+WSLGITA+E+A G+PP
Sbjct: 144 KLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 203
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           + ++HPM+ +F+IP   PP+      ++    +FV  CL K P  R TA E+L H+FI R
Sbjct: 204 HSELHPMKVLFLIPKNNPPTLE--GNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILR 261
Query: 241 H 241
           +
Sbjct: 262 N 262

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score =  190 bits (482), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 100/243 (41%), Positives = 136/243 (55%), Gaps = 46/243 (18%)
Query: 9   VVKYYGSYFK------NTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGL 61
           +  YYG++ K      +  LW+VME+CGAGSV+D+++  K  TL E+ IA I  + L+GL
Sbjct: 83  IATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGL 142
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            +LH  + IHRDIK                                   N+LL      K
Sbjct: 143 SHLHQHKVIHRDIKGQ---------------------------------NVLLTENAEVK 169
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----EIGYDCVADMWSLGITALEMAE 176
           L DFGV+ QL  T+ +RNT IGTP+WMAPEVI      +  YD  +D+WSLGITA+EMAE
Sbjct: 170 LVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAE 229
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE 236
           G PP  D+HPMRA+F+IP  P P  +    W+ +F  F+  CLVKN  +R    +++ H 
Sbjct: 230 GAPPLCDMHPMRALFLIPRNPAPRLKSKK-WSKKFQSFIESCLVKNHSQRPATEQLMKHP 288
Query: 237 FIQ 239
           FI+
Sbjct: 289 FIR 291

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score =  187 bits (474), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 93/243 (38%), Positives = 138/243 (56%), Gaps = 38/243 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +  CD PY+VK  G+Y+ +  LWI++E+C  G+V  IM    + L+E +I  +    L+ 
Sbjct: 70  LATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEA 129
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L +LH +R IHRD                                 LKAGN+L+  EG  
Sbjct: 130 LNFLHSKRIIHRD---------------------------------LKAGNVLMTLEGDI 156
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-----QEIGYDCVADMWSLGITALEMA 175
           +LADFGV+ +   T+ KR++ IGTP+WMAPEV+     ++  YD  AD+WSLGIT +EMA
Sbjct: 157 RLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMA 216
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           + +PP+ +++PMR +  I    PP+   P  W+ EF DF+   L KNPE R +A+++L H
Sbjct: 217 QIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH 276
Query: 236 EFI 238
            F+
Sbjct: 277 PFV 279

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score =  187 bits (474), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 93/243 (38%), Positives = 138/243 (56%), Gaps = 38/243 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +  CD PY+VK  G+Y+ +  LWI++E+C  G+V  IM    + L+E +I  +    L+ 
Sbjct: 62  LATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEA 121
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L +LH +R IHRD                                 LKAGN+L+  EG  
Sbjct: 122 LNFLHSKRIIHRD---------------------------------LKAGNVLMTLEGDI 148
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-----QEIGYDCVADMWSLGITALEMA 175
           +LADFGV+ +   T+ KR++ IGTP+WMAPEV+     ++  YD  AD+WSLGIT +EMA
Sbjct: 149 RLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMA 208
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           + +PP+ +++PMR +  I    PP+   P  W+ EF DF+   L KNPE R +A+++L H
Sbjct: 209 QIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH 268
Query: 236 EFI 238
            F+
Sbjct: 269 PFV 271

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score =  184 bits (468), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/250 (36%), Positives = 137/250 (54%), Gaps = 38/250 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +  CD P +VK   +++   +LWI++E+C  G+V  +M   ++ L+E +I  +   TL  
Sbjct: 88  LASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA 147
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH  + IHRD                                 LKAGNIL   +G  
Sbjct: 148 LNYLHDNKIIHRD---------------------------------LKAGNILFTLDGDI 174
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-----QEIGYDCVADMWSLGITALEMA 175
           KLADFGV+ + T T+ +R++ IGTP+WMAPEV+     ++  YD  AD+WSLGIT +EMA
Sbjct: 175 KLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMA 234
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           E +PP+ +++PMR +  I    PP+  +P  W+  F DF+ +CL KN + R T S++L H
Sbjct: 235 EIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQH 294
Query: 236 EFIQRHDTDP 245
            F+      P
Sbjct: 295 PFVTVDSNKP 304

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/250 (36%), Positives = 136/250 (54%), Gaps = 38/250 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +  CD P +VK   +++   +LWI++E+C  G+V  +M   ++ L+E +I  +   TL  
Sbjct: 88  LASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA 147
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH  + IHRD                                 LKAGNIL   +G  
Sbjct: 148 LNYLHDNKIIHRD---------------------------------LKAGNILFTLDGDI 174
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-----QEIGYDCVADMWSLGITALEMA 175
           KLADFGV+ + T  + +R++ IGTP+WMAPEV+     ++  YD  AD+WSLGIT +EMA
Sbjct: 175 KLADFGVSAKNTRXIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMA 234
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           E +PP+ +++PMR +  I    PP+  +P  W+  F DF+ +CL KN + R T S++L H
Sbjct: 235 EIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQH 294
Query: 236 EFIQRHDTDP 245
            F+      P
Sbjct: 295 PFVTVDSNKP 304

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/250 (36%), Positives = 135/250 (54%), Gaps = 38/250 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +  CD P +VK   +++   +LWI++E+C  G+V  +M   ++ L+E +I  +   TL  
Sbjct: 88  LASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA 147
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH  + IHRD                                 LKAGNIL   +G  
Sbjct: 148 LNYLHDNKIIHRD---------------------------------LKAGNILFTLDGDI 174
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-----QEIGYDCVADMWSLGITALEMA 175
           KLADFGV+ + T  + +R+  IGTP+WMAPEV+     ++  YD  AD+WSLGIT +EMA
Sbjct: 175 KLADFGVSAKNTRXIQRRDXFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMA 234
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           E +PP+ +++PMR +  I    PP+  +P  W+  F DF+ +CL KN + R T S++L H
Sbjct: 235 EIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQH 294
Query: 236 EFIQRHDTDP 245
            F+      P
Sbjct: 295 PFVTVDSNKP 304

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 136/239 (56%), Gaps = 35/239 (14%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M++  +P +V Y  SY    +LW+VMEY   GS++D+  + +  + E +IA +  + L+ 
Sbjct: 71  MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQA 128
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LE+LH  + IHRDIK+                                  NILL  +G  
Sbjct: 129 LEFLHSNQVIHRDIKSD---------------------------------NILLGMDGSV 155
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG   Q+T   +KR+T++GTP+WMAPEV+    Y    D+WSLGI A+EM EG+PP
Sbjct: 156 KLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y + +P+RA+++I T   P  + P+  +  F DF++RCL  + E+R +A E+L H+F++
Sbjct: 216 YLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLK 274

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score =  177 bits (448), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 135/239 (56%), Gaps = 35/239 (14%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M++  +P +V Y  SY    +LW+VMEY   GS++D+  + +  + E +IA +  + L+ 
Sbjct: 71  MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQA 128
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LE+LH  + IHRDIK+                                  NILL  +G  
Sbjct: 129 LEFLHSNQVIHRDIKSD---------------------------------NILLGMDGSV 155
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG   Q+T   +KR+ ++GTP+WMAPEV+    Y    D+WSLGI A+EM EG+PP
Sbjct: 156 KLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y + +P+RA+++I T   P  + P+  +  F DF++RCL  + E+R +A E+L H+F++
Sbjct: 216 YLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLK 274

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 135/239 (56%), Gaps = 35/239 (14%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M++  +P +V Y  SY    +LW+VMEY   GS++D+  + +  + E +IA +  + L+ 
Sbjct: 71  MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQA 128
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LE+LH  + IHRDIK+                                  NILL  +G  
Sbjct: 129 LEFLHSNQVIHRDIKSD---------------------------------NILLGMDGSV 155
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG   Q+T   +KR+ ++GTP+WMAPEV+    Y    D+WSLGI A+EM EG+PP
Sbjct: 156 KLTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y + +P+RA+++I T   P  + P+  +  F DF++RCL  + E+R +A E+L H+F++
Sbjct: 216 YLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLK 274

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 136/239 (56%), Gaps = 35/239 (14%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M++  +P +V Y  SY    +LW+VMEY   GS++D+  + +  + E +IA +  + L+ 
Sbjct: 72  MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQA 129
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LE+LH  + IHR+IK+                                  NILL  +G  
Sbjct: 130 LEFLHSNQVIHRNIKSD---------------------------------NILLGMDGSV 156
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG   Q+T   +KR+T++GTP+WMAPEV+    Y    D+WSLGI A+EM EG+PP
Sbjct: 157 KLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 216
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y + +P+RA+++I T   P  + P+  +  F DF++RCL  + E+R +A E++ H+F++
Sbjct: 217 YLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELIQHQFLK 275

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 135/239 (56%), Gaps = 35/239 (14%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M++  +P +V Y  SY    +LW+VMEY   GS++D+  + +  + E +IA +  + L+ 
Sbjct: 72  MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDV--VTETCMDEGQIAAVCRECLQA 129
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LE+LH  + IHRDIK+                                  NILL  +G  
Sbjct: 130 LEFLHSNQVIHRDIKSD---------------------------------NILLGMDGSV 156
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG   Q+T   +KR+ ++GTP+WMAPEV+    Y    D+WSLGI A+EM EG+PP
Sbjct: 157 KLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 216
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           Y + +P+RA+++I T   P  + P+  +  F DF++RCL  + E+R +A E++ H+F++
Sbjct: 217 YLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELIQHQFLK 275

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score =  166 bits (420), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/262 (38%), Positives = 135/262 (51%), Gaps = 57/262 (21%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-------RKKTLSEDEIATI 53
           M QC  P +V YY S+    +LW+VM+    GSV DI++        +   L E  IATI
Sbjct: 67  MSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATI 126
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
           L + L+GLEYLH   +IHRD+KAG                                 NIL
Sbjct: 127 LREVLEGLEYLHKNGQIHRDVKAG---------------------------------NIL 153
Query: 114 LNTEGHAKLADFGVA------GQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVADMWS 166
           L  +G  ++ADFGV+      G +T     R T +GTP WMAPEV++++ GYD  AD+WS
Sbjct: 154 LGEDGSVQIADFGVSAFLATGGDITRNKV-RKTFVGTPCWMAPEVMEQVRGYDFKADIWS 212
Query: 167 LGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPE--------FIDFVSRC 218
            GITA+E+A G  PY    PM+ + +     PPS  E  V   E        F   +S C
Sbjct: 213 FGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSL-ETGVQDKEMLKKYGKSFRKMISLC 271
Query: 219 LVKNPEERATASEMLNHEFIQR 240
           L K+PE+R TA+E+L H+F Q+
Sbjct: 272 LQKDPEKRPTAAELLRHKFFQK 293

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/262 (38%), Positives = 135/262 (51%), Gaps = 57/262 (21%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-------RKKTLSEDEIATI 53
           M QC  P +V YY S+    +LW+VM+    GSV DI++        +   L E  IATI
Sbjct: 62  MSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATI 121
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
           L + L+GLEYLH   +IHRD+KAG                                 NIL
Sbjct: 122 LREVLEGLEYLHKNGQIHRDVKAG---------------------------------NIL 148
Query: 114 LNTEGHAKLADFGVA------GQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVADMWS 166
           L  +G  ++ADFGV+      G +T     R T +GTP WMAPEV++++ GYD  AD+WS
Sbjct: 149 LGEDGSVQIADFGVSAFLATGGDITRNKV-RKTFVGTPCWMAPEVMEQVRGYDFKADIWS 207
Query: 167 LGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPE--------FIDFVSRC 218
            GITA+E+A G  PY    PM+ + +     PPS  E  V   E        F   +S C
Sbjct: 208 FGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSL-ETGVQDKEMLKKYGKSFRKMISLC 266
Query: 219 LVKNPEERATASEMLNHEFIQR 240
           L K+PE+R TA+E+L H+F Q+
Sbjct: 267 LQKDPEKRPTAAELLRHKFFQK 288

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 127/230 (55%), Gaps = 35/230 (15%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           VV+ Y SY    +LW++ME+   G+++DI  + +  L+E++IAT+    L+ L YLH + 
Sbjct: 104 VVEMYKSYLVGEELWVLMEFLQGGALTDI--VSQVRLNEEQIATVCEAVLQALAYLHAQG 161
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            IHRDIK+ S                                 ILL  +G  KL+DFG  
Sbjct: 162 VIHRDIKSDS---------------------------------ILLTLDGRVKLSDFGFC 188
Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR 188
            Q++  + KR  ++GTP+WMAPEVI    Y    D+WSLGI  +EM +G+PPY    P++
Sbjct: 189 AQISKDVPKRKXLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQ 248
Query: 189 AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           A+  +   PPP  +     +P   DF+ R LV++P+ERATA E+L+H F+
Sbjct: 249 AMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFL 298

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/243 (38%), Positives = 125/243 (51%), Gaps = 42/243 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q+   P  ++Y G Y +    W+VMEYC  GS SD++ + KK L E EIA +    L+G
Sbjct: 108 LQKLRHPNTIQYRGCYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAVTHGALQG 166
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH    IHRD+KAG                                 NILL+  G  
Sbjct: 167 LAYLHSHNMIHRDVKAG---------------------------------NILLSEPGLV 193
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI---QEIGYDCVADMWSLGITALEMAEG 177
           KL DFG A      MA  N  +GTP+WMAPEVI    E  YD   D+WSLGIT +E+AE 
Sbjct: 194 KLGDFGSAS----IMAPANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 249
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           KPP  +++ M A++ I     P+ +    W+  F +FV  CL K P++R T+  +L H F
Sbjct: 250 KPPLFNMNAMSALYHIAQNESPALQSGH-WSEYFRNFVDSCLQKIPQDRPTSEVLLKHRF 308
Query: 238 IQR 240
           + R
Sbjct: 309 VLR 311

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/243 (38%), Positives = 125/243 (51%), Gaps = 42/243 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q+   P  ++Y G Y +    W+VMEYC  GS SD++ + KK L E EIA +    L+G
Sbjct: 69  LQKLRHPNTIQYRGCYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAVTHGALQG 127
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH    IHRD+KAG                                 NILL+  G  
Sbjct: 128 LAYLHSHNMIHRDVKAG---------------------------------NILLSEPGLV 154
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI---QEIGYDCVADMWSLGITALEMAEG 177
           KL DFG A      MA  N  +GTP+WMAPEVI    E  YD   D+WSLGIT +E+AE 
Sbjct: 155 KLGDFGSAS----IMAPANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 210
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           KPP  +++ M A++ I     P+ +    W+  F +FV  CL K P++R T+  +L H F
Sbjct: 211 KPPLFNMNAMSALYHIAQNESPALQSGH-WSEYFRNFVDSCLQKIPQDRPTSEVLLKHRF 269
Query: 238 IQR 240
           + R
Sbjct: 270 VLR 272

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 35/232 (15%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           VV+ Y SY    +LW+VME+   G+++DI  +    ++E++IA +    L+ L  LH + 
Sbjct: 88  VVEMYNSYLVGDELWVVMEFLEGGALTDI--VTHTRMNEEQIAAVCLAVLQALSVLHAQG 145
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            IHRDIK+ S                                 ILL  +G  KL+DFG  
Sbjct: 146 VIHRDIKSDS---------------------------------ILLTHDGRVKLSDFGFC 172
Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR 188
            Q++  + +R  ++GTP+WMAPE+I  + Y    D+WSLGI  +EM +G+PPY +  P++
Sbjct: 173 AQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK 232
Query: 189 AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           A+ MI    PP  +     +P    F+ R LV++P +RATA+E+L H F+ +
Sbjct: 233 AMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAK 284

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 35/232 (15%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           VV+ Y SY    +LW+VME+   G+++DI  +    ++E++IA +    L+ L  LH + 
Sbjct: 79  VVEMYNSYLVGDELWVVMEFLEGGALTDI--VTHTRMNEEQIAAVCLAVLQALSVLHAQG 136
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            IHRDIK+ S                                 ILL  +G  KL+DFG  
Sbjct: 137 VIHRDIKSDS---------------------------------ILLTHDGRVKLSDFGFC 163
Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR 188
            Q++  + +R  ++GTP+WMAPE+I  + Y    D+WSLGI  +EM +G+PPY +  P++
Sbjct: 164 AQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK 223
Query: 189 AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           A+ MI    PP  +     +P    F+ R LV++P +RATA+E+L H F+ +
Sbjct: 224 AMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAK 275

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 35/232 (15%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           VV+ Y SY    +LW+VME+   G+++DI  +    ++E++IA +    L+ L  LH + 
Sbjct: 90  VVEMYNSYLVGDELWVVMEFLEGGALTDI--VTHTRMNEEQIAAVCLAVLQALSVLHAQG 147
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            IHRDIK+ S                                 ILL  +G  KL+DFG  
Sbjct: 148 VIHRDIKSDS---------------------------------ILLTHDGRVKLSDFGFC 174
Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR 188
            Q++  + +R  ++GTP+WMAPE+I  + Y    D+WSLGI  +EM +G+PPY +  P++
Sbjct: 175 AQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK 234
Query: 189 AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           A+ MI    PP  +     +P    F+ R LV++P +RATA+E+L H F+ +
Sbjct: 235 AMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAK 286

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 35/232 (15%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           VV+ Y SY    +LW+VME+   G+++DI  +    ++E++IA +    L+ L  LH + 
Sbjct: 83  VVEMYNSYLVGDELWVVMEFLEGGALTDI--VTHTRMNEEQIAAVCLAVLQALSVLHAQG 140
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            IHRDIK+ S                                 ILL  +G  KL+DFG  
Sbjct: 141 VIHRDIKSDS---------------------------------ILLTHDGRVKLSDFGFC 167
Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR 188
            Q++  + +R  ++GTP+WMAPE+I  + Y    D+WSLGI  +EM +G+PPY +  P++
Sbjct: 168 AQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK 227
Query: 189 AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           A+ MI    PP  +     +P    F+ R LV++P +RATA+E+L H F+ +
Sbjct: 228 AMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAK 279

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 35/232 (15%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           VV+ Y SY    +LW+VME+   G+++DI  +    ++E++IA +    L+ L  LH + 
Sbjct: 133 VVEMYNSYLVGDELWVVMEFLEGGALTDI--VTHTRMNEEQIAAVCLAVLQALSVLHAQG 190
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            IHRDIK+ S                                 ILL  +G  KL+DFG  
Sbjct: 191 VIHRDIKSDS---------------------------------ILLTHDGRVKLSDFGFC 217
Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR 188
            Q++  + +R  ++GTP+WMAPE+I  + Y    D+WSLGI  +EM +G+PPY +  P++
Sbjct: 218 AQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK 277
Query: 189 AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           A+ MI    PP  +     +P    F+ R LV++P +RATA+E+L H F+ +
Sbjct: 278 AMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAK 329

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score =  155 bits (393), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 126/232 (54%), Gaps = 35/232 (15%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           VV+ Y SY    +LW+VME+   G+++DI+   +  ++E++IA +    L+ L  LH + 
Sbjct: 210 VVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTR--MNEEQIAAVCLAVLQALSVLHAQG 267
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            IHRDIK+ S                                 ILL  +G  KL+DFG  
Sbjct: 268 VIHRDIKSDS---------------------------------ILLTHDGRVKLSDFGFC 294
Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR 188
            Q++  + +R  ++GTP+WMAPE+I  + Y    D+WSLGI  +EM +G+PPY +  P++
Sbjct: 295 AQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLK 354
Query: 189 AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           A+ MI    PP  +     +P    F+ R LV++P +RATA+E+L H F+ +
Sbjct: 355 AMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAK 406

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 135/249 (54%), Gaps = 42/249 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++ +   + E  +  +    +KG
Sbjct: 77  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPEQILGKVSIAVIKG 135
Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + KI HRD+K                                   NIL+N+ G 
Sbjct: 136 LTYLREKHKIMHRDVKPS---------------------------------NILVNSRGE 162
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            KL DFGV+GQL D+MA  N+ +GT  +M+PE +Q   Y   +D+WS+G++ +EMA G+ 
Sbjct: 163 IKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 220
Query: 180 PYGDIHPMRAIF----MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           P G      AIF     I  +PPP      V++ EF DFV++CL+KNP ERA   +++ H
Sbjct: 221 PIGSGSGSMAIFELLDYIVNEPPPKL-PSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH 279
Query: 236 EFIQRHDTD 244
            FI+R D +
Sbjct: 280 AFIKRSDAE 288

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 123/231 (53%), Gaps = 35/231 (15%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           VV  Y SY    +LW+VME+   G+++DI  +    ++E++IAT+    L+ L YLH + 
Sbjct: 104 VVDMYSSYLVGDELWVVMEFLEGGALTDI--VTHTRMNEEQIATVCLSVLRALSYLHNQG 161
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            IHRDIK+ S                                 ILL ++G  KL+DFG  
Sbjct: 162 VIHRDIKSDS---------------------------------ILLTSDGRIKLSDFGFC 188
Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR 188
            Q++  + KR  ++GTP+WMAPEVI  + Y    D+WSLGI  +EM +G+PPY +  P++
Sbjct: 189 AQVSKEVPKRKXLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQ 248
Query: 189 AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           A+  I    PP  ++    +     F+   LV+ P +RATA E+L H F++
Sbjct: 249 AMRRIRDSLPPRVKDLHKVSSVLRGFLDLMLVREPSQRATAQELLGHPFLK 299

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/255 (34%), Positives = 137/255 (53%), Gaps = 48/255 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++ +   + E  +  +    +KG
Sbjct: 58  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPEQILGKVSIAVIKG 116
Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + KI HRD+K                                   NIL+N+ G 
Sbjct: 117 LTYLREKHKIMHRDVKPS---------------------------------NILVNSRGE 143
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK- 178
            KL DFGV+GQL D+MA  N+ +GT  +M+PE +Q   Y   +D+WS+G++ +EMA G+ 
Sbjct: 144 IKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 201
Query: 179 ---PPYG--DIHPMRAIF----MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA 229
              PP    D  P  AIF     I  +PPP      V++ EF DFV++CL+KNP ERA  
Sbjct: 202 PIPPPDAKEDSRPPMAIFELLDYIVNEPPPKLPS-GVFSLEFQDFVNKCLIKNPAERADL 260
Query: 230 SEMLNHEFIQRHDTD 244
            +++ H FI+R D +
Sbjct: 261 KQLMVHAFIKRSDAE 275

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 133/249 (53%), Gaps = 46/249 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++ +   + E  +  +    +KG
Sbjct: 61  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPEQILGKVSIAVIKG 119
Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + KI HRD+K                                   NIL+N+ G 
Sbjct: 120 LTYLREKHKIMHRDVKPS---------------------------------NILVNSRGE 146
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            KL DFGV+GQL D MA  N  +GT  +M+PE +Q   Y   +D+WS+G++ +EMA G+ 
Sbjct: 147 IKLCDFGVSGQLIDEMA--NEFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 204
Query: 180 PYGDIHPMRAIF----MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           P     P  AIF     I  +PPP      V++ EF DFV++CL+KNP ERA   +++ H
Sbjct: 205 P----RPPMAIFELLDYIVNEPPPKLPSA-VFSLEFQDFVNKCLIKNPAERADLKQLMVH 259
Query: 236 EFIQRHDTD 244
            FI+R D +
Sbjct: 260 AFIKRSDAE 268

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 139/287 (48%), Gaps = 80/287 (27%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++ +   + E  +  +    +KG
Sbjct: 120 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPEQILGKVSIAVIKG 178
Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + KI HRD+K                                   NIL+N+ G 
Sbjct: 179 LTYLREKHKIMHRDVKPS---------------------------------NILVNSRGE 205
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK- 178
            KL DFGV+GQL D+MA  N+ +GT  +M+PE +Q   Y   +D+WS+G++ +EMA G+ 
Sbjct: 206 IKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 263
Query: 179 --PP----------------------------------YG-DIHPMRAIF----MIPTKP 197
             PP                                  YG D  P  AIF     I  +P
Sbjct: 264 PIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEP 323
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD 244
           PP      V++ EF DFV++CL+KNP ERA   +++ H FI+R D +
Sbjct: 324 PPKLPSA-VFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAE 369

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 138/287 (48%), Gaps = 80/287 (27%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++ +   + E  +  +    +KG
Sbjct: 58  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPEQILGKVSIAVIKG 116
Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + KI HRD+K                                   NIL+N+ G 
Sbjct: 117 LTYLREKHKIMHRDVKPS---------------------------------NILVNSRGE 143
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            KL DFGV+GQL D+MA  N+ +GT  +M+PE +Q   Y   +D+WS+G++ +EMA G+ 
Sbjct: 144 IKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 201
Query: 180 P-------------------------------------YG-DIHPMRAIF----MIPTKP 197
           P                                     YG D  P  AIF     I  +P
Sbjct: 202 PIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEP 261
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD 244
           PP      V++ EF DFV++CL+KNP ERA   +++ H FI+R D +
Sbjct: 262 PPKLPS-GVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAE 307

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 138/287 (48%), Gaps = 80/287 (27%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++ +   + E  +  +    +KG
Sbjct: 58  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPEQILGKVSIAVIKG 116
Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + KI HRD+K                                   NIL+N+ G 
Sbjct: 117 LTYLREKHKIMHRDVKPS---------------------------------NILVNSRGE 143
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            KL DFGV+GQL D+MA  N+ +GT  +M+PE +Q   Y   +D+WS+G++ +EMA G+ 
Sbjct: 144 IKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 201
Query: 180 P-------------------------------------YG-DIHPMRAIF----MIPTKP 197
           P                                     YG D  P  AIF     I  +P
Sbjct: 202 PIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEP 261
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD 244
           PP      V++ EF DFV++CL+KNP ERA   +++ H FI+R D +
Sbjct: 262 PPKLPS-GVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAE 307

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 138/287 (48%), Gaps = 80/287 (27%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++ +   + E  +  +    +KG
Sbjct: 58  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPEQILGKVSIAVIKG 116
Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + KI HRD+K                                   NIL+N+ G 
Sbjct: 117 LTYLREKHKIMHRDVKPS---------------------------------NILVNSRGE 143
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            KL DFGV+GQL D+MA  N+ +GT  +M+PE +Q   Y   +D+WS+G++ +EMA G+ 
Sbjct: 144 IKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 201
Query: 180 P-------------------------------------YG-DIHPMRAIF----MIPTKP 197
           P                                     YG D  P  AIF     I  +P
Sbjct: 202 PIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEP 261
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD 244
           PP      V++ EF DFV++CL+KNP ERA   +++ H FI+R D +
Sbjct: 262 PPKLPS-GVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAE 307

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 138/287 (48%), Gaps = 80/287 (27%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++ +   + E  +  +    +KG
Sbjct: 58  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPEQILGKVSIAVIKG 116
Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + KI HRD+K                                   NIL+N+ G 
Sbjct: 117 LTYLREKHKIMHRDVKPS---------------------------------NILVNSRGE 143
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            KL DFGV+GQL D+MA  N+ +GT  +M+PE +Q   Y   +D+WS+G++ +EMA G+ 
Sbjct: 144 IKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 201
Query: 180 P-------------------------------------YG-DIHPMRAIF----MIPTKP 197
           P                                     YG D  P  AIF     I  +P
Sbjct: 202 PIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEP 261
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD 244
           PP      V++ EF DFV++CL+KNP ERA   +++ H FI+R D +
Sbjct: 262 PPKLPS-GVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAE 307

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 140/291 (48%), Gaps = 84/291 (28%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++   K + E+ +  +    L+G
Sbjct: 68  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-EAKRIPEEILGKVSIAVLRG 126
Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + +I HRD+K                                   NIL+N+ G 
Sbjct: 127 LAYLREKHQIMHRDVKPS---------------------------------NILVNSRGE 153
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK- 178
            KL DFGV+GQL D+MA  N+ +GT  +MAPE +Q   Y   +D+WS+G++ +E+A G+ 
Sbjct: 154 IKLCDFGVSGQLIDSMA--NSFVGTRSYMAPERLQGTHYSVQSDIWSMGLSLVELAVGRY 211
Query: 179 --PP---------YG------------------------------DIHPMRAIF----MI 193
             PP         +G                              D  P  AIF     I
Sbjct: 212 PIPPPDAKELEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYI 271
Query: 194 PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD 244
             +PPP      V+TP+F +FV++CL+KNP ERA    + NH FI+R + +
Sbjct: 272 VNEPPPKLPN-GVFTPDFQEFVNKCLIKNPAERADLKMLTNHTFIKRSEVE 321

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score =  138 bits (347), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 138/287 (48%), Gaps = 80/287 (27%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++ +   + E  +  +    +KG
Sbjct: 85  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPEQILGKVSIAVIKG 143
Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + KI HRD+K                                   NIL+N+ G 
Sbjct: 144 LTYLREKHKIMHRDVKPS---------------------------------NILVNSRGE 170
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            KL DFGV+GQL D+MA  N+ +GT  +M+PE +Q   Y   +D+WS+G++ +EMA G+ 
Sbjct: 171 IKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 228
Query: 180 P------------YG--------------------------DIHPMRAIF----MIPTKP 197
           P            +G                          D  P  AIF     I  +P
Sbjct: 229 PIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEP 288
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD 244
           PP      V++ EF DFV++CL+KNP ERA   +++ H FI+R D +
Sbjct: 289 PPKL-PSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAE 334

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 122/252 (48%), Gaps = 45/252 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDT 57
           M+  D P+ V +YG+ F+  D+WI ME     S+    +    + +T+ ED +  I    
Sbjct: 104 MRTVDCPFTVTFYGALFREGDVWICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSI 162
Query: 58  LKGLEYLHLRRK-IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
           +K LE+LH +   IHRD+K                                   N+L+N 
Sbjct: 163 VKALEHLHSKLSVIHRDVKPS---------------------------------NVLINA 189
Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ----EIGYDCVADMWSLGITAL 172
            G  K+ DFG++G L D++AK       P+ MAPE I     + GY   +D+WSLGIT +
Sbjct: 190 LGQVKMCDFGISGYLVDSVAKTIDAGCKPY-MAPERINPELNQKGYSVKSDIWSLGITMI 248
Query: 173 EMAEGKPPYGDI-HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
           E+A  + PY     P + +  +  +P P     D ++ EF+DF S+CL KN +ER T  E
Sbjct: 249 ELAILRFPYDSWGTPFQQLKQVVEEPSPQL-PADKFSAEFVDFTSQCLKKNSKERPTYPE 307
Query: 232 MLNHEFIQRHDT 243
           ++ H F   H++
Sbjct: 308 LMQHPFFTLHES 319

>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d) Length = 290

Iteration: 1
 Score =  120 bits (302), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/252 (31%), Positives = 122/252 (48%), Gaps = 45/252 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDT 57
           M+  D P+ V +YG+ F+  D+WI ME     S+    +    + +T+ ED +  I    
Sbjct: 60  MRTVDCPFTVTFYGALFREGDVWICMELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSI 118
Query: 58  LKGLEYLHLRRK-IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
           +K LE+LH +   IHRD+K                                   N+L+N 
Sbjct: 119 VKALEHLHSKLSVIHRDVKPS---------------------------------NVLINA 145
Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ----EIGYDCVADMWSLGITAL 172
            G  K+ DFG++G L D +AK +   G   +MAPE I     + GY   +D+WSLGIT +
Sbjct: 146 LGQVKMCDFGISGYLVDDVAK-DIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMI 204
Query: 173 EMAEGKPPYGDI-HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
           E+A  + PY     P + +  +  +P P     D ++ EF+DF S+CL KN +ER T  E
Sbjct: 205 ELAILRFPYDSWGTPFQQLKQVVEEPSPQL-PADKFSAEFVDFTSQCLKKNSKERPTYPE 263
Query: 232 MLNHEFIQRHDT 243
           ++ H F   H++
Sbjct: 264 LMQHPFFTLHES 275

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 117/249 (46%), Gaps = 45/249 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAG---SVSDIMRLRKKTLSEDEIATILCDT 57
           M+  D PY+V++YG+ F+  D WI ME            +  +    + E+ +  I   T
Sbjct: 75  MRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLAT 134
Query: 58  LKGLEYLHLRRK-IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
           +K L +L    K IHRDI                                 K  NILL+ 
Sbjct: 135 VKALNHLKENLKIIHRDI---------------------------------KPSNILLDR 161
Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI----QEIGYDCVADMWSLGITAL 172
            G+ KL DFG++GQL D++AK       P+ MAPE I       GYD  +D+WSLGIT  
Sbjct: 162 SGNIKLCDFGISGQLVDSIAKTRDAGCRPY-MAPERIDPSASRQGYDVRSDVWSLGITLY 220
Query: 173 EMAEGKPPYGDIHPM--RAIFMIPTKPPP-SFREPDVWTPEFIDFVSRCLVKNPEERATA 229
           E+A G+ PY   + +  +   ++   PP  S  E   ++P FI+FV+ CL K+  +R   
Sbjct: 221 ELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKY 280
Query: 230 SEMLNHEFI 238
            E+L H FI
Sbjct: 281 KELLKHPFI 289

>pdb|3ENM|A Chain A, The Structure Of The Map2k Mek6 Reveals An Autoinhibitory Dimer Length = 316

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 116/248 (46%), Gaps = 45/248 (18%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGL 61
           D P+ V +YG+ F+  D+WI  E     S+    +    + +T+ ED +  I    +K L
Sbjct: 91  DCPFTVTFYGALFREGDVWICXELXDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKAL 149
Query: 62  EYLHLRRK-IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           E+LH +   IHRD+K                                   N+L+N  G  
Sbjct: 150 EHLHSKLSVIHRDVKPS---------------------------------NVLINALGQV 176
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ----EIGYDCVADMWSLGITALEMAE 176
           K  DFG++G L D +AK +   G   + APE I     + GY   +D+WSLGIT +E+A 
Sbjct: 177 KXCDFGISGYLVDDVAK-DIDAGCKPYXAPERINPELNQKGYSVKSDIWSLGITXIELAI 235
Query: 177 GKPPYGDI-HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
            + PY     P + +  +  +P P     D ++ EF+DF S+CL KN +ER T  E+  H
Sbjct: 236 LRFPYDSWGTPFQQLKQVVEEPSPQL-PADKFSAEFVDFTSQCLKKNSKERPTYPELXQH 294
Query: 236 EFIQRHDT 243
            F   H++
Sbjct: 295 PFFTLHES 302

>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase Kinase 5 Length = 295

Iteration: 1
 Score =  107 bits (266), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 42/238 (17%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDE--IATILCDTLKGLEYLHL 66
           +V+Y GS+ +N  + I ME    GS+S ++R +   L ++E  I       L+GL+YLH 
Sbjct: 81  IVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD 140
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-EGHAKLADF 125
            + +HRDIK                                   N+L+NT  G  K++DF
Sbjct: 141 NQIVHRDIKGD---------------------------------NVLINTYSGVLKISDF 167
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQE--IGYDCVADMWSLGITALEMAEGKPPYGD 183
           G + +L        T  GT  +MAPE+I +   GY   AD+WSLG T +EMA GKPP+ +
Sbjct: 168 GTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYE 227
Query: 184 I-HPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           +  P  A+F +   K  P    P+  + E   F+ +C   +P++RA A+++L  EF++
Sbjct: 228 LGEPQAAMFKVGMFKVHPEI--PESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLK 283

>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating Kinase 1 (Ask1) With Imidazopyridine Inhibitor Length = 269

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 42/238 (17%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDE--IATILCDTLKGLEYLHL 66
           +V+Y GS+ +N  + I ME    GS+S ++R +   L ++E  I       L+GL+YLH 
Sbjct: 67  IVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHD 126
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-EGHAKLADF 125
            + +HRDIK                                   N+L+NT  G  K++DF
Sbjct: 127 NQIVHRDIKGD---------------------------------NVLINTYSGVLKISDF 153
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQE--IGYDCVADMWSLGITALEMAEGKPPYGD 183
           G + +L        T  GT  +MAPE+I +   GY   AD+WSLG T +EMA GKPP+ +
Sbjct: 154 GTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYE 213
Query: 184 I-HPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           +  P  A+F +   K  P    P+  + E   F+ +C   +P++RA A+++L  EF++
Sbjct: 214 LGEPQAAMFKVGMFKVHPEI--PESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLK 269

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 117/250 (46%), Gaps = 42/250 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++  D PY+V+ +G++  NTD++I ME  G      + +  +  + E  +  +    +K 
Sbjct: 78  LKSHDCPYIVQCFGTFITNTDVFIAMELMGT-CAEKLKKRMQGPIPERILGKMTVAIVKA 136
Query: 61  LEYLHLRRK-IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  +   IHRD+K                                   NILL+  G 
Sbjct: 137 LYYLKEKHGVIHRDVKPS---------------------------------NILLDERGQ 163
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----EIGYDCVADMWSLGITALEM 174
            KL DFG++G+L D  AK  +  G   +MAPE I      +  YD  AD+WSLGI+ +E+
Sbjct: 164 IKLCDFGISGRLVDDKAKDRSA-GCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVEL 222
Query: 175 AEGKPPYGDIHP-MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           A G+ PY +       +  +  + PP       ++ +F  FV  CL K+  +R   +++L
Sbjct: 223 ATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLL 282
Query: 234 NHEFIQRHDT 243
            H FI+R++T
Sbjct: 283 EHSFIKRYET 292

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 45/234 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCDT 57
           ++Q + P V+KYY S+ ++ +L IV+E   AG +S +++    +K+ + E  +       
Sbjct: 86  LKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQL 145
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
              LE++H RR +HRDIK                                   N+ +   
Sbjct: 146 CSALEHMHSRRVMHRDIKPA---------------------------------NVFITAT 172
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           G  KL D G+    +      ++++GTP++M+PE I E GY+  +D+WSLG    EMA  
Sbjct: 173 GVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL 232
Query: 178 KPP-YGDIHPM----RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
           + P YGD   +    + I      P PS    D ++ E    V+ C+  +PE+R
Sbjct: 233 QSPFYGDKMNLYSLCKKIEQCDYPPLPS----DHYSEELRQLVNMCINPDPEKR 282

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 37/237 (15%)
Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           +  D+P+VV ++G +  +  +++V+E C   S+ ++ + R+K ++E E    +  T++G+
Sbjct: 97  KSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLELHK-RRKAVTEPEARYFMRQTIQGV 155
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
           +YLH  R IHRD                                 LK GN+ LN +   K
Sbjct: 156 QYLHNNRVIHRD---------------------------------LKLGNLFLNDDMDVK 182
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           + DFG+A ++     ++ T+ GTP ++APEV+ + G+    D+WSLG     +  GKPP+
Sbjct: 183 IGDFGLATKIEFDGERKKTLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPF 242
Query: 182 GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
            +   ++  ++   K    +  P    P     + R L  +P  R + +E+L  EF 
Sbjct: 243 -ETSCLKETYIRIKK--NEYSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFF 296

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 41/246 (16%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 69  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 126
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 127 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 153
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +     +  +R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 154 GWSCHAPSS--RRTTLSGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 210
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 211 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 268
Query: 246 SQNGGK 251
           S +  K
Sbjct: 269 SNSQNK 274

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 108/231 (46%), Gaps = 37/231 (16%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR 67
           +VV ++G +  N  +++V+E C   S+ ++ + R+K L+E E    L   + G +YLH  
Sbjct: 78  HVVGFHGFFEDNDFVFVVLELCRRRSLLELHK-RRKALTEPEARYYLRQIVLGCQYLHRN 136
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
           R IHRD                                 LK GN+ LN +   K+ DFG+
Sbjct: 137 RVIHRD---------------------------------LKLGNLFLNEDLEVKIGDFGL 163
Query: 128 AGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
           A ++     ++ T+ GTP ++APEV+ + G+    D+WS+G     +  GKPP+ +   +
Sbjct: 164 ATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF-ETSCL 222
Query: 188 RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +  ++   K    +  P    P     + + L  +P  R T +E+LN EF 
Sbjct: 223 KETYLRIKK--NEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFF 271

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 108/231 (46%), Gaps = 37/231 (16%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR 67
           +VV ++G +  N  +++V+E C   S+ ++ + R+K L+E E    L   + G +YLH  
Sbjct: 78  HVVGFHGFFEDNDFVFVVLELCRRRSLLELHK-RRKALTEPEARYYLRQIVLGCQYLHRN 136
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
           R IHRD                                 LK GN+ LN +   K+ DFG+
Sbjct: 137 RVIHRD---------------------------------LKLGNLFLNEDLEVKIGDFGL 163
Query: 128 AGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
           A ++     ++ T+ GTP ++APEV+ + G+    D+WS+G     +  GKPP+ +   +
Sbjct: 164 ATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF-ETSCL 222
Query: 188 RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +  ++   K    +  P    P     + + L  +P  R T +E+LN EF 
Sbjct: 223 KETYLRIKK--NEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFF 271

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 37/237 (15%)
Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           +  D+P+VV ++G +  +  +++V+E C   S+ ++ + R+K ++E E    +  T++G+
Sbjct: 97  KSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLELHK-RRKAVTEPEARYFMRQTIQGV 155
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
           +YLH  R IHRD                                 LK GN+ LN +   K
Sbjct: 156 QYLHNNRVIHRD---------------------------------LKLGNLFLNDDMDVK 182
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           + DFG+A ++     ++  + GTP ++APEV+ + G+    D+WSLG     +  GKPP+
Sbjct: 183 IGDFGLATKIEFDGERKKXLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPF 242
Query: 182 GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
            +   ++  ++   K    +  P    P     + R L  +P  R + +E+L  EF 
Sbjct: 243 -ETSCLKETYIRIKK--NEYSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFF 296

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 108/231 (46%), Gaps = 37/231 (16%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR 67
           +VV ++G +  N  +++V+E C   S+ ++ + R+K L+E E    L   + G +YLH  
Sbjct: 82  HVVGFHGFFEDNDFVFVVLELCRRRSLLELHK-RRKALTEPEARYYLRQIVLGCQYLHRN 140
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
           R IHRD                                 LK GN+ LN +   K+ DFG+
Sbjct: 141 RVIHRD---------------------------------LKLGNLFLNEDLEVKIGDFGL 167
Query: 128 AGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
           A ++     ++ T+ GTP ++APEV+ + G+    D+WS+G     +  GKPP+ +   +
Sbjct: 168 ATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF-ETSCL 226
Query: 188 RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +  ++   K    +  P    P     + + L  +P  R T +E+LN EF 
Sbjct: 227 KETYLRIKK--NEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFF 275

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 37/237 (15%)
Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           +  D+P+VV ++G +  +  +++V+E C   S+ ++ + R+K ++E E    +  T++G+
Sbjct: 81  KSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLELHK-RRKAVTEPEARYFMRQTIQGV 139
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
           +YLH  R IHRD                                 LK GN+ LN +   K
Sbjct: 140 QYLHNNRVIHRD---------------------------------LKLGNLFLNDDMDVK 166
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           + DFG+A ++     ++  + GTP ++APEV+ + G+    D+WSLG     +  GKPP+
Sbjct: 167 IGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPF 226
Query: 182 GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
            +   ++  ++   K    +  P    P     + R L  +P  R + +E+L  EF 
Sbjct: 227 -ETSCLKETYIRIKK--NEYSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFF 280

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L +    E   AT + +    L Y H
Sbjct: 72  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSR--FDEQRTATYITELANALSYCH 129
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 130 SKRVIHRDIKPE---------------------------------NLLLGSNGELKIADF 156
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R+T+ GT  ++ PE+I+   +D   D+WSLG+   E   G PP+ + H
Sbjct: 157 GWS--VHAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGMPPF-EAH 213
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  N  +R T +E+L H +I+ + + P
Sbjct: 214 TYQETYRRISRVEFTF--PDFVTEGARDLISRLLKHNASQRLTLAEVLEHPWIKANSSKP 271
Query: 246 S 246
           S
Sbjct: 272 S 272

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 113/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 69  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 126
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 127 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 153
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R+T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 154 GWS--VHAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 210
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 211 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 268
Query: 246 S 246
           S
Sbjct: 269 S 269

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 37/237 (15%)
Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           +  D+P+VV ++G +  +  +++V+E C   S+ ++ + R+K ++E E    +  T++G+
Sbjct: 97  KSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLELHK-RRKAVTEPEARYFMRQTIQGV 155
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
           +YLH  R IHRD                                 LK GN+ LN +   K
Sbjct: 156 QYLHNNRVIHRD---------------------------------LKLGNLFLNDDMDVK 182
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           + DFG+A ++     ++  + GTP ++APEV+ + G+    D+WSLG     +  GKPP+
Sbjct: 183 IGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPF 242
Query: 182 GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
            +   ++  ++   K    +  P    P     + R L  +P  R + +E+L  EF 
Sbjct: 243 -ETSCLKETYIRIKK--NEYSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFF 296

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 116/249 (46%), Gaps = 38/249 (15%)
Query: 3   QCDSPYVVKYYGSYFKNTD-LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           Q   P +++ Y +YF++++ +++V+E C  G ++  ++ R K  SE+E    +   + G+
Sbjct: 67  QLKHPSILELY-NYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGM 125
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            YLH    +HRD                                 L   N+LL    + K
Sbjct: 126 LYLHSHGILHRD---------------------------------LTLSNLLLTRNMNIK 152
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           +ADFG+A QL     K  T+ GTP +++PE+     +   +D+WSLG     +  G+PP+
Sbjct: 153 IADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPF 212
Query: 182 GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH 241
            D   ++    +       +  P   + E  D + + L +NP +R + S +L+H F+ R+
Sbjct: 213 -DTDTVKNT--LNKVVLADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFMSRN 269
Query: 242 DTDPSQNGG 250
            +  S++ G
Sbjct: 270 SSTKSKDEG 278

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 73  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 130
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 131 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 157
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 158 GWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 214
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 215 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 272
Query: 246 S 246
           S
Sbjct: 273 S 273

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 113/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L +    E   AT + +    L Y H
Sbjct: 72  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSR--FDEQRTATYITELANALSYCH 129
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 130 SKRVIHRDIKPE---------------------------------NLLLGSNGELKIADF 156
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE+I+   +D   D+WSLG+   E   G PP+ + H
Sbjct: 157 GWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGMPPF-EAH 213
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  N  +R T +E+L H +I+ + + P
Sbjct: 214 TYQETYRRISRVEFTF--PDFVTEGARDLISRLLKHNASQRLTLAEVLEHPWIKANSSKP 271
Query: 246 S 246
           S
Sbjct: 272 S 272

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 112/245 (45%), Gaps = 41/245 (16%)
Query: 1   MQQCDSPYVVKYYGSYFK-NTD-LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL 58
           +++ D P VVK        N D L++V E    G V ++  L  K LSED+      D +
Sbjct: 90  LKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL--KPLSEDQARFYFQDLI 147
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           KG+EYLH ++ IHRDIK                                   N+L+  +G
Sbjct: 148 KGIEYLHYQKIIHRDIKPS---------------------------------NLLVGEDG 174
Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE---IGYDCVADMWSLGITALEMA 175
           H K+ADFGV+ +   + A  +  +GTP +MAPE + E   I      D+W++G+T     
Sbjct: 175 HIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFV 234
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
            G+ P+ D   M     I ++      +PD+   +  D ++R L KNPE R    E+  H
Sbjct: 235 FGQCPFMDERIMCLHSKIKSQALEFPDQPDI-AEDLKDLITRMLDKNPESRIVVPEIKLH 293
Query: 236 EFIQR 240
            ++ R
Sbjct: 294 PWVTR 298

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 71  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 128
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 129 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 155
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 156 GWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 212
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 213 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 270
Query: 246 S 246
           S
Sbjct: 271 S 271

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 73  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 130
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 131 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 157
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 158 GWS--VHAPSSRRTTLCGTLDYLPPEXIEGRXHDEKVDLWSLGVLCYEFLVGKPPF-EAN 214
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 215 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPXLREVLEHPWITANSSKP 272
Query: 246 S 246
           S
Sbjct: 273 S 273

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 85  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 142
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 143 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 169
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 170 GWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 226
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 227 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 284
Query: 246 S 246
           S
Sbjct: 285 S 285

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G V  ++ +L K    E   AT + +    L Y H
Sbjct: 73  PNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSK--FDEQRTATYITELANALSYCH 130
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 131 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 157
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 158 GWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 214
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 215 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 272
Query: 246 S 246
           S
Sbjct: 273 S 273

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 68  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 125
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 126 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 152
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 153 GWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 209
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 210 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 267
Query: 246 S 246
           S
Sbjct: 268 S 268

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 94  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 151
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 152 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 178
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 179 GWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 235
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 236 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 293
Query: 246 S 246
           S
Sbjct: 294 S 294

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 67  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 124
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 125 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 151
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 152 GWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 208
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 209 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 266
Query: 246 S 246
           S
Sbjct: 267 S 267

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 72  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 129
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 130 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 156
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 157 GWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 213
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 214 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 271
Query: 246 S 246
           S
Sbjct: 272 S 272

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 37/231 (16%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR 67
           +VV ++G +  N  +++V+E C   S+ ++ + R+K L+E E    L   + G +YLH  
Sbjct: 76  HVVGFHGFFEDNDFVFVVLELCRRRSLLELHK-RRKALTEPEARYYLRQIVLGCQYLHRN 134
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
           R IHRD                                 LK GN+ LN +   K+ DFG+
Sbjct: 135 RVIHRD---------------------------------LKLGNLFLNEDLEVKIGDFGL 161
Query: 128 AGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
           A ++     ++  + GTP ++APEV+ + G+    D+WS+G     +  GKPP+ +   +
Sbjct: 162 ATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF-ETSCL 220
Query: 188 RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +  ++   K   S   P    P     + + L  +P  R T +E+LN EF 
Sbjct: 221 KETYLRIKKNEYSI--PKHINPVAASLIQKMLQTDPTARPTINELLNDEFF 269

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 37/231 (16%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR 67
           +VV ++G +  N  +++V+E C   S+ ++ + R+K L+E E    L   + G +YLH  
Sbjct: 100 HVVGFHGFFEDNDFVFVVLELCRRRSLLELHK-RRKALTEPEARYYLRQIVLGCQYLHRN 158
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
           R IHRD                                 LK GN+ LN +   K+ DFG+
Sbjct: 159 RVIHRD---------------------------------LKLGNLFLNEDLEVKIGDFGL 185
Query: 128 AGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
           A ++     ++  + GTP ++APEV+ + G+    D+WS+G     +  GKPP+ +   +
Sbjct: 186 ATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF-ETSCL 244
Query: 188 RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +  ++   K    +  P    P     + + L  +P  R T +E+LN EF 
Sbjct: 245 KETYLRIKK--NEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFF 293

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 37/231 (16%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR 67
           +VV ++G +  N  +++V+E C   S+ ++ + R+K L+E E    L   + G +YLH  
Sbjct: 102 HVVGFHGFFEDNDFVFVVLELCRRRSLLELHK-RRKALTEPEARYYLRQIVLGCQYLHRN 160
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
           R IHRD                                 LK GN+ LN +   K+ DFG+
Sbjct: 161 RVIHRD---------------------------------LKLGNLFLNEDLEVKIGDFGL 187
Query: 128 AGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
           A ++     ++  + GTP ++APEV+ + G+    D+WS+G     +  GKPP+ +   +
Sbjct: 188 ATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPF-ETSCL 246
Query: 188 RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +  ++   K    +  P    P     + + L  +P  R T +E+LN EF 
Sbjct: 247 KETYLRIKK--NEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFF 295

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 70  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 127
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+A+F
Sbjct: 128 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIANF 154
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 155 GWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 211
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 212 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 269
Query: 246 S 246
           S
Sbjct: 270 S 270

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 71  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 128
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+A+F
Sbjct: 129 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIANF 155
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 156 GWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 212
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 213 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 270
Query: 246 S 246
           S
Sbjct: 271 S 271

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 71  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 128
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 129 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 155
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 156 GWS--VHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 212
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 213 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 270
Query: 246 S 246
           S
Sbjct: 271 S 271

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 70  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 127
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 128 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 154
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 155 GWS--VHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 211
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 212 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 269
Query: 246 S 246
           S
Sbjct: 270 S 270

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 94  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 151
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 152 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 178
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R+ + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 179 GWS--VHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 235
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 236 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 293
Query: 246 S 246
           S
Sbjct: 294 S 294

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 68  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 125
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 126 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 152
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 153 GWS--VHAPSSRRTELCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 209
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 210 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 267
Query: 246 S 246
           S
Sbjct: 268 S 268

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 40/238 (16%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL-SEDEIATILCDTLKGLEYLH 65
           P +V+Y  S+ +N  L+IVM+YC  G +   +  +K  L  ED+I          L+++H
Sbjct: 83  PNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH 142
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            R+ +HRDI                                 K+ NI L  +G  +L DF
Sbjct: 143 DRKILHRDI---------------------------------KSQNIFLTKDGTVQLGDF 169
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY--GD 183
           G+A  L  T+      IGTP++++PE+ +   Y+  +D+W+LG    E+   K  +  G 
Sbjct: 170 GIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS 229
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH 241
           +  +    +  + PP S      ++ +    VS+   +NP +R + + +L   FI + 
Sbjct: 230 MKNLVLKIISGSFPPVSLH----YSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKR 283

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 112/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 71  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 128
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 129 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 155
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R+ + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 156 GWS--VHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 212
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 213 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 270
Query: 246 S 246
           S
Sbjct: 271 S 271

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 73  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 130
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 131 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 157
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 158 GWS--VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 214
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 215 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 272
Query: 246 S 246
           S
Sbjct: 273 S 273

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G V  ++ +L K    E   AT + +    L Y H
Sbjct: 73  PNILRLYGYFHDATRVYLILEYAPRGEVYKELQKLSK--FDEQRTATYITELANALSYCH 130
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 131 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 157
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 158 GWS--VHAPSSRRXXLXGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 214
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 215 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 272
Query: 246 S 246
           S
Sbjct: 273 S 273

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 69  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 126
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 127 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 153
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 154 GWS--VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 210
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 211 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 268
Query: 246 S 246
           S
Sbjct: 269 S 269

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 112/246 (45%), Gaps = 41/246 (16%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 68  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 125
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 126 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 152
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 153 GWS--VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 209
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 210 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 267
Query: 246 SQNGGK 251
           S    K
Sbjct: 268 SNCQNK 273

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 68  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 125
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 126 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 152
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 153 GWS--VHAPSSRRTXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 209
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 210 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 267
Query: 246 S 246
           S
Sbjct: 268 S 268

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 111/246 (45%), Gaps = 41/246 (16%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 68  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 125
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 126 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 152
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +     +  +R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 153 GWSVHAPSS--RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 209
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 210 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 267
Query: 246 SQNGGK 251
           S    K
Sbjct: 268 SNCQNK 273

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 68  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 125
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 126 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 152
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +     +  +R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 153 GWSVHAPSS--RRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 209
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 210 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 267
Query: 246 S 246
           S
Sbjct: 268 S 268

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 68  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 125
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 126 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 152
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 153 GWS--VHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 209
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 210 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 267
Query: 246 S 246
           S
Sbjct: 268 S 268

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 111/241 (46%), Gaps = 41/241 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +  +T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 68  PNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 125
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            ++ IHRDIK                                   N+LL + G  K+ADF
Sbjct: 126 SKKVIHRDIKPE---------------------------------NLLLGSAGELKIADF 152
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +     +  +R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 153 GWSVHAPSS--RRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 209
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I  + + P
Sbjct: 210 TYQDTYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANSSKP 267
Query: 246 S 246
           S
Sbjct: 268 S 268

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 71  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 128
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 129 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 155
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 156 GWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 212
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I
Sbjct: 213 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWI 263

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 65  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 122
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 123 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 149
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 150 GWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 206
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I
Sbjct: 207 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWI 257

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 107/243 (44%), Gaps = 44/243 (18%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +++   +Y  NT  ++V +    G + D +   K TLSE E   I+   L+ +  LH 
Sbjct: 84  PNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT-EKVTLSEKETRKIMRALLEVICALHK 142
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              +HRD                                 LK  NILL+ + + KL DFG
Sbjct: 143 LNIVHRD---------------------------------LKPENILLDDDMNIKLTDFG 169
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQ------EIGYDCVADMWSLGITALEMAEGKPP 180
            + QL D   K  +V GTP ++APE+I+        GY    DMWS G+    +  G PP
Sbjct: 170 FSCQL-DPGEKLRSVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP 228
Query: 181 YGDIHPMRAIFMIPTKPPPSFREP--DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +     M  + MI +     F  P  D ++    D VSR LV  P++R TA E L H F 
Sbjct: 229 FWHRKQMLMLRMIMSGNY-QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFF 287
Query: 239 QRH 241
           Q++
Sbjct: 288 QQY 290

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 41/233 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++ YG +   T +++++EY   G+V  ++ +L K    E   AT + +    L Y H
Sbjct: 71  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSK--FDEQRTATYITELANALSYCH 128
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +R IHRDIK                                   N+LL + G  K+ADF
Sbjct: 129 SKRVIHRDIKPE---------------------------------NLLLGSAGELKIADF 155
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G +  +    ++R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP+ + +
Sbjct: 156 GWS--VHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPF-EAN 212
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
             +  +   ++   +F  PD  T    D +SR L  NP +R    E+L H +I
Sbjct: 213 TYQETYKRISRVEFTF--PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWI 263

>pdb|3GNI|B Chain B, Structure Of Strad And Mo25 Length = 389

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 121/284 (42%), Gaps = 76/284 (26%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEY 63
           + P +V Y  ++  + +LW+V  +   GS  D++       ++E  IA IL   LK L+Y
Sbjct: 84  NHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDY 143
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK-- 121
           +H    +HR +KA    +  D              ++Y +  R    N+ + + G  +  
Sbjct: 144 IHHMGYVHRSVKASHILISVD-------------GKVYLSGLR---SNLSMISHGQRQRV 187
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE--IGYDCVADMWSLGITALEMAEGKP 179
           + DF            + +V   P W++PEV+Q+   GYD  +D++S+GITA E+A G  
Sbjct: 188 VHDF-----------PKYSVKVLP-WLSPEVLQQNLQGYDAKSDIYSVGITACELANGHV 235
Query: 180 PYGDIH----------------------PMRAIFMIPTKP-------------------- 197
           P+ D+                       P   + M P++                     
Sbjct: 236 PFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNG 295
Query: 198 -PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
             PS      ++P F  FV +CL +NP+ R +AS +LNH F ++
Sbjct: 296 DSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQ 339

>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 373

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 121/284 (42%), Gaps = 76/284 (26%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEY 63
           + P +V Y  ++  + +LW+V  +   GS  D++       ++E  IA IL   LK L+Y
Sbjct: 68  NHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDY 127
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK-- 121
           +H    +HR +KA    +  D              ++Y +  R    N+ + + G  +  
Sbjct: 128 IHHMGYVHRSVKASHILISVD-------------GKVYLSGLR---SNLSMISHGQRQRV 171
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE--IGYDCVADMWSLGITALEMAEGKP 179
           + DF            + +V   P W++PEV+Q+   GYD  +D++S+GITA E+A G  
Sbjct: 172 VHDF-----------PKYSVKVLP-WLSPEVLQQNLQGYDAKSDIYSVGITACELANGHV 219
Query: 180 PYGDIH----------------------PMRAIFMIPTKP-------------------- 197
           P+ D+                       P   + M P++                     
Sbjct: 220 PFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNG 279
Query: 198 -PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
             PS      ++P F  FV +CL +NP+ R +AS +LNH F ++
Sbjct: 280 DSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQ 323

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 106/243 (43%), Gaps = 44/243 (18%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +++   +Y  NT  ++V +    G + D +   K TLSE E   I+   L+ +  LH 
Sbjct: 71  PNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT-EKVTLSEKETRKIMRALLEVICALHK 129
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              +HRD                                 LK  NILL+ + + KL DFG
Sbjct: 130 LNIVHRD---------------------------------LKPENILLDDDMNIKLTDFG 156
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQ------EIGYDCVADMWSLGITALEMAEGKPP 180
            + QL D   K   V GTP ++APE+I+        GY    DMWS G+    +  G PP
Sbjct: 157 FSCQL-DPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP 215
Query: 181 YGDIHPMRAIFMIPTKPPPSFREP--DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +     M  + MI +     F  P  D ++    D VSR LV  P++R TA E L H F 
Sbjct: 216 FWHRKQMLMLRMIMSGNY-QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFF 274
Query: 239 QRH 241
           Q++
Sbjct: 275 QQY 277

>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 In Presence Of Indirubin E804 Length = 277

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 116/253 (45%), Gaps = 42/253 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  D P +++ Y ++  NTD+++VME C  G + + + + K+   E + A I+ D L  
Sbjct: 60  MKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERV-VHKRVFRESDAARIMKDVLSA 118
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + Y H     HRD+K  +   + D  D                                 
Sbjct: 119 VAYCHKLNVAHRDLKPENFLFLTDSPD------------------------------SPL 148
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVADMWSLGITALEMAEGKP 179
           KL DFG+A +       R T +GTP++++P+V++ + G +C  D WS G+    +  G P
Sbjct: 149 KLIDFGLAARFKPGKMMR-TKVGTPYYVSPQVLEGLYGPEC--DEWSAGVMMYVLLCGYP 205
Query: 180 PYGDIHPMRAIFMIPTKPPP-SFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLNH 235
           P+    P     M+  +    +F E D W   +P+    + R L K+P++R T+ + L H
Sbjct: 206 PFS--APTDXEVMLKIREGTFTFPEKD-WLNVSPQAESLIRRLLTKSPKQRITSLQALEH 262
Query: 236 EFIQRHDTDPSQN 248
           E+ ++  +   +N
Sbjct: 263 EWFEKQLSSSPRN 275

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 106/243 (43%), Gaps = 44/243 (18%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +++   +Y  NT  ++V +    G + D +   K TLSE E   I+   L+ +  LH 
Sbjct: 84  PNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT-EKVTLSEKETRKIMRALLEVICALHK 142
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              +HRD                                 LK  NILL+ + + KL DFG
Sbjct: 143 LNIVHRD---------------------------------LKPENILLDDDMNIKLTDFG 169
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQ------EIGYDCVADMWSLGITALEMAEGKPP 180
            + QL D   K   V GTP ++APE+I+        GY    DMWS G+    +  G PP
Sbjct: 170 FSCQL-DPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPP 228
Query: 181 YGDIHPMRAIFMIPTKPPPSFREP--DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +     M  + MI +     F  P  D ++    D VSR LV  P++R TA E L H F 
Sbjct: 229 FWHRKQMLMLRMIMSGNY-QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFF 287
Query: 239 QRH 241
           Q++
Sbjct: 288 QQY 290

>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase Cgd7_1840 Length = 294

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 116/253 (45%), Gaps = 42/253 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  D P +++ Y ++  NTD+++VME C  G + + + + K+   E + A I+ D L  
Sbjct: 77  MKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERV-VHKRVFRESDAARIMKDVLSA 135
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + Y H     HRD+K  +   + D  D                                 
Sbjct: 136 VAYCHKLNVAHRDLKPENFLFLTDSPD------------------------------SPL 165
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVADMWSLGITALEMAEGKP 179
           KL DFG+A +       R T +GTP++++P+V++ + G +C  D WS G+    +  G P
Sbjct: 166 KLIDFGLAARFKPGKMMR-TKVGTPYYVSPQVLEGLYGPEC--DEWSAGVMMYVLLCGYP 222
Query: 180 PYGDIHPMRAIFMIPTKPPP-SFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLNH 235
           P+    P     M+  +    +F E D W   +P+    + R L K+P++R T+ + L H
Sbjct: 223 PFS--APTDXEVMLKIREGTFTFPEKD-WLNVSPQAESLIRRLLTKSPKQRITSLQALEH 279
Query: 236 EFIQRHDTDPSQN 248
           E+ ++  +   +N
Sbjct: 280 EWFEKQLSSSPRN 292

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 38/231 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQ  + P++V  + S+    D+++V++    G +   ++ +     E+ +   +C+ +  
Sbjct: 69  MQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQ-QNVHFKEETVKLFICELVMA 127
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YL  +R IHRD                                 +K  NILL+  GH 
Sbjct: 128 LDYLQNQRIIHRD---------------------------------MKPDNILLDEHGHV 154
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE---IGYDCVADMWSLGITALEMAEG 177
            + DF +A  L     +  T+ GT  +MAPE+       GY    D WSLG+TA E+  G
Sbjct: 155 HITDFNIAAMLPRE-TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRG 213
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY       +  ++ T        P  W+ E +  + + L  NP++R +
Sbjct: 214 RRPYHIRSSTSSKEIVHTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFS 264

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 44/257 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q D P ++K Y  +    + ++VME    G + D + LR+K  SE + A I+   L G
Sbjct: 58  LKQLDHPNIMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQK-FSEVDAAVIMKQVLSG 116
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH- 119
             YLH    +HRD                                 LK  N+LL ++   
Sbjct: 117 TTYLHKHNIVHRD---------------------------------LKPENLLLESKSRD 143
Query: 120 --AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              K+ DFG++    +   K    +GT +++APEV+++  YD   D+WS G+    +  G
Sbjct: 144 ALIKIVDFGLSAHF-EVGGKMKERLGTAYYIAPEVLRK-KYDEKCDVWSCGVILYILLCG 201
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTP---EFIDFVSRCLVKNPEERATASEMLN 234
            PP+G     + I     K   SF  PD WT    E    V   L   P +R +A E LN
Sbjct: 202 YPPFGG-QTDQEILKRVEKGKFSFDPPD-WTQVSDEAKQLVKLMLTYEPSKRISAEEALN 259
Query: 235 HEFIQRHDTDPSQNGGK 251
           H +I +  +    + GK
Sbjct: 260 HPWIVKFCSQKHTDVGK 276

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 106/244 (43%), Gaps = 44/244 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q D P ++K Y  +    + ++VME    G + D + LR+K  SE + A I+   L G
Sbjct: 75  LKQLDHPNIMKLYEFFEDKRNYYLVMEVYRGGELFDEIILRQK-FSEVDAAVIMKQVLSG 133
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH- 119
             YLH    +HRD                                 LK  N+LL ++   
Sbjct: 134 TTYLHKHNIVHRD---------------------------------LKPENLLLESKSRD 160
Query: 120 --AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              K+ DFG++    +   K    +GT +++APEV+++  YD   D+WS G+    +  G
Sbjct: 161 ALIKIVDFGLSAHF-EVGGKMKERLGTAYYIAPEVLRK-KYDEKCDVWSCGVILYILLCG 218
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTP---EFIDFVSRCLVKNPEERATASEMLN 234
            PP+G     + I     K   SF  PD WT    E    V   L   P +R +A E LN
Sbjct: 219 YPPFGG-QTDQEILKRVEKGKFSFDPPD-WTQVSDEAKQLVKLMLTYEPSKRISAEEALN 276
Query: 235 HEFI 238
           H +I
Sbjct: 277 HPWI 280

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 42/243 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     ++  +  L  VMEY   G +   +  R++  +E+       + +  
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-RERVFTEERARFYGAEIVSA 117
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH R  ++RDIK                                   N++L+ +GH 
Sbjct: 118 LEYLHSRDVVYRDIKLE---------------------------------NLMLDKDGHI 144
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A   T  GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 145 KITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 204
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    R   +I  +     R P   +PE    ++  L K+P++R     + A E++ H
Sbjct: 205 FYNQDHERLFELILME---EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261
Query: 236 EFI 238
            F 
Sbjct: 262 RFF 264

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 42/243 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     ++  +  L  VMEY   G +   +  R++  +E+       + +  
Sbjct: 62  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-RERVFTEERARFYGAEIVSA 120
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH R  ++RDIK                                   N++L+ +GH 
Sbjct: 121 LEYLHSRDVVYRDIKLE---------------------------------NLMLDKDGHI 147
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A   T  GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 148 KITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 207
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    R   +I  +     R P   +PE    ++  L K+P++R     + A E++ H
Sbjct: 208 FYNQDHERLFELILME---EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 264
Query: 236 EFI 238
            F 
Sbjct: 265 RFF 267

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 42/243 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     ++  +  L  VMEY   G +   +  R++  +E+       + +  
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-RERVFTEERARFYGAEIVSA 117
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH R  ++RDIK                                   N++L+ +GH 
Sbjct: 118 LEYLHSRDVVYRDIKLE---------------------------------NLMLDKDGHI 144
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A   T  GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 145 KITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 204
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    R   +I  +     R P   +PE    ++  L K+P++R     + A E++ H
Sbjct: 205 FYNQDHERLFELILME---EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261
Query: 236 EFI 238
            F 
Sbjct: 262 RFF 264

>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2 Length = 361

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 107/251 (42%), Gaps = 40/251 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q   P ++  +  Y   TD+ +++E    G + D +  +K++LSE+E  + +   L G
Sbjct: 69  LRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFL-AQKESLSEEEATSFIKQILDG 127
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-- 118
           + YLH ++  H                                 F LK  NI+L  +   
Sbjct: 128 VNYLHTKKIAH---------------------------------FDLKPENIMLLDKNIP 154
Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
             H KL DFG+A ++ D +  +N + GTP ++APE++        ADMWS+G+    +  
Sbjct: 155 IPHIKLIDFGLAHEIEDGVEFKN-IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS 213
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERATASEMLNH 235
           G  P+        +  I         E    T E   DF+ + LVK   +R T  E L H
Sbjct: 214 GASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH 273
Query: 236 EFIQRHDTDPS 246
            +I   DT  +
Sbjct: 274 PWITPVDTQQA 284

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ADFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 KVADFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 42/243 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     ++  +  L  VMEY   G +   +  R++  +E+       + +  
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-RERVFTEERARFYGAEIVSA 117
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH R  ++RDIK                                   N++L+ +GH 
Sbjct: 118 LEYLHSRDVVYRDIKLE---------------------------------NLMLDKDGHI 144
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A      GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 145 KITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 204
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    R   +I  +     R P   +PE    ++  L K+P++R     + A E++ H
Sbjct: 205 FYNQDHERLFELILME---EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261
Query: 236 EFI 238
            F 
Sbjct: 262 RFF 264

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 42/243 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     ++  +  L  VMEY   G +   +  R++  +E+       + +  
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-RERVFTEERARFYGAEIVSA 117
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH R  ++RDIK                                   N++L+ +GH 
Sbjct: 118 LEYLHSRDVVYRDIKLE---------------------------------NLMLDKDGHI 144
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A      GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 145 KITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 204
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    R   +I  +     R P   +PE    ++  L K+P++R     + A E++ H
Sbjct: 205 FYNQDHERLFELILME---EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261
Query: 236 EFI 238
            F 
Sbjct: 262 RFF 264

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 116 LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 174
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 175 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 201
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++        T+ GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 202 QVTDFGFAKRVKGATW---TLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 258
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 259 FFADQPIQ 266

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ADFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 KVADFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 42/243 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     ++  +  L  VMEY   G +   +  R++  +E+       + +  
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-RERVFTEERARFYGAEIVSA 117
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH R  ++RDIK                                   N++L+ +GH 
Sbjct: 118 LEYLHSRDVVYRDIKLE---------------------------------NLMLDKDGHI 144
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A      GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 145 KITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 204
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    R   +I  +     R P   +PE    ++  L K+P++R     + A E++ H
Sbjct: 205 FYNQDHERLFELILME---EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261
Query: 236 EFI 238
            F 
Sbjct: 262 RFF 264

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 102/243 (41%), Gaps = 42/243 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     ++  +  L  VMEY   G +   +  R++  +E+       + +  
Sbjct: 64  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-RERVFTEERARFYGAEIVSA 122
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH R  ++RDIK                                   N++L+ +GH 
Sbjct: 123 LEYLHSRDVVYRDIKLE---------------------------------NLMLDKDGHI 149
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A      GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 150 KITDFGLCKEGISDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 209
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    R   +I  +     R P   +PE    ++  L K+P++R     + A E++ H
Sbjct: 210 FYNQDHERLFELILME---EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 266
Query: 236 EFI 238
            F 
Sbjct: 267 RFF 269

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYMPGGDMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ADFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 KVADFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 81  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 139
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 140 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 166
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +  T+ GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 167 QVTDFGFAKRVK---GRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 223
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 224 FFADQPIQ 231

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 43/247 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM---RLRKKTLSEDEIATILCDT 57
           ++  D P ++K +  +    +++IVME C  G + + +   + R K LSE  +A ++   
Sbjct: 74  LKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQM 133
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL-NT 116
           +  L Y H +  +H+D                                 LK  NIL  +T
Sbjct: 134 MNALAYFHSQHVVHKD---------------------------------LKPENILFQDT 160
Query: 117 EGHA--KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-EIGYDCVADMWSLGITALE 173
             H+  K+ DFG+A +L  +        GT  +MAPEV + ++ + C  D+WS G+    
Sbjct: 161 SPHSPIKIIDFGLA-ELFKSDEHSTNAAGTALYMAPEVFKRDVTFKC--DIWSAGVVMYF 217
Query: 174 MAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           +  G  P+              K P    E    TP+ +D + + L K+PE R +A+++L
Sbjct: 218 LLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVL 277
Query: 234 NHEFIQR 240
           +HE+ ++
Sbjct: 278 HHEWFKQ 284

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 96  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 154
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 155 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 181
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +  T+ GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 182 QVTDFGFAKRVK---GRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 239 FFADQPIQ 246

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 44/246 (17%)
Query: 3   QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL-SEDEIATILCDTLKGL 61
           + + P++VK + ++     L++++++   G +    RL K+ + +E+++   L +    L
Sbjct: 82  EVNHPFIVKLHYAFQTEGKLYLILDFLRGGDL--FTRLSKEVMFTEEDVKFYLAELALAL 139
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
           ++LH    I+RD                                 LK  NILL+ EGH K
Sbjct: 140 DHLHSLGIIYRD---------------------------------LKPENILLDEEGHIK 166
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           L DFG++ +  D   K  +  GT  +MAPEV+   G+   AD WS G+   EM  G  P+
Sbjct: 167 LTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPF 226
Query: 182 GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA-----SEMLNHE 236
                   + MI          P   +PE    +     +NP  R  A      E+  H 
Sbjct: 227 QGKDRKETMTMILK---AKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHS 283
Query: 237 FIQRHD 242
           F    D
Sbjct: 284 FFSTID 289

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 44/246 (17%)
Query: 3   QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL-SEDEIATILCDTLKGL 61
           + + P++VK + ++     L++++++   G +    RL K+ + +E+++   L +    L
Sbjct: 82  EVNHPFIVKLHYAFQTEGKLYLILDFLRGGDL--FTRLSKEVMFTEEDVKFYLAELALAL 139
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
           ++LH    I+RD                                 LK  NILL+ EGH K
Sbjct: 140 DHLHSLGIIYRD---------------------------------LKPENILLDEEGHIK 166
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           L DFG++ +  D   K  +  GT  +MAPEV+   G+   AD WS G+   EM  G  P+
Sbjct: 167 LTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPF 226
Query: 182 GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA-----SEMLNHE 236
                   + MI          P   +PE    +     +NP  R  A      E+  H 
Sbjct: 227 QGKDRKETMTMILK---AKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHS 283
Query: 237 FIQRHD 242
           F    D
Sbjct: 284 FFSTID 289

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 44/246 (17%)
Query: 3   QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL-SEDEIATILCDTLKGL 61
           + + P++VK + ++     L++++++   G +    RL K+ + +E+++   L +    L
Sbjct: 83  EVNHPFIVKLHYAFQTEGKLYLILDFLRGGDL--FTRLSKEVMFTEEDVKFYLAELALAL 140
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
           ++LH    I+RD                                 LK  NILL+ EGH K
Sbjct: 141 DHLHSLGIIYRD---------------------------------LKPENILLDEEGHIK 167
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           L DFG++ +  D   K  +  GT  +MAPEV+   G+   AD WS G+   EM  G  P+
Sbjct: 168 LTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPF 227
Query: 182 GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA-----SEMLNHE 236
                   + MI          P   +PE    +     +NP  R  A      E+  H 
Sbjct: 228 QGKDRKETMTMILK---AKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHS 284
Query: 237 FIQRHD 242
           F    D
Sbjct: 285 FFSTID 290

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLXGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLAGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 82  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 140
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 141 FEYLHSLDLIYRD---------------------------------LKPENLLIDEQGYI 167
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 168 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 224
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 225 FFADQPIQ 232

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 96  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 154
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 155 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 181
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 182 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 239 FFADQPIQ 246

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N++++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLMIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 KVTDFGLAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 106/240 (44%), Gaps = 32/240 (13%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P ++  +  +   TD+ +++E    G + D +   K++L+EDE    L   L G
Sbjct: 62  LREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFL-AEKESLTEDEATQFLKQILDG 120
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH +R  H D+K     ++ D+        NV   +I                    
Sbjct: 121 VHYLHSKRIAHFDLKP-ENIMLLDK--------NVPNPRI-------------------- 151
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG+A ++      +N + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 152 KLIDFGIAHKIEAGNEFKN-IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 210
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERATASEMLNHEFIQ 239
           +        +  I         E    T E   DF+ R LVK+P+ R T ++ L H +I+
Sbjct: 211 FLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIK 270

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1 Kinase Length = 288

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 40/243 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q     V+  +  Y   TD+ +++E    G + D +  +K++LSE+E  + +   L G
Sbjct: 69  LRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFL-AQKESLSEEEATSFIKQILDG 127
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-- 118
           + YLH ++  H                                 F LK  NI+L  +   
Sbjct: 128 VNYLHTKKIAH---------------------------------FDLKPENIMLLDKNIP 154
Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
             H KL DFG+A ++ D +  +N + GTP ++APE++        ADMWS+G+    +  
Sbjct: 155 IPHIKLIDFGLAHEIEDGVEFKN-IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS 213
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERATASEMLNH 235
           G  P+        +  I +       E    T E   DF+ + LVK   +R T  E L H
Sbjct: 214 GASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH 273
Query: 236 EFI 238
            +I
Sbjct: 274 PWI 276

>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The Autoinhibited Conformation Of A Human Death-associated Protein Kinase Length = 321

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 40/243 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q     V+  +  Y   TD+ +++E    G + D +  +K++LSE+E  + +   L G
Sbjct: 69  LRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFL-AQKESLSEEEATSFIKQILDG 127
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-- 118
           + YLH ++  H                                 F LK  NI+L  +   
Sbjct: 128 VNYLHTKKIAH---------------------------------FDLKPENIMLLDKNIP 154
Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
             H KL DFG+A ++ D +  +N + GTP ++APE++        ADMWS+G+    +  
Sbjct: 155 IPHIKLIDFGLAHEIEDGVEFKN-IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS 213
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERATASEMLNH 235
           G  P+        +  I +       E    T E   DF+ + LVK   +R T  E L H
Sbjct: 214 GASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH 273
Query: 236 EFI 238
            +I
Sbjct: 274 PWI 276

>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 3 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 40/243 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q     V+  +  Y   TD+ +++E    G + D +  +K++LSE+E  + +   L G
Sbjct: 69  LRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFL-AQKESLSEEEATSFIKQILDG 127
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-- 118
           + YLH ++  H                                 F LK  NI+L  +   
Sbjct: 128 VNYLHTKKIAH---------------------------------FDLKPENIMLLDKNIP 154
Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
             H KL DFG+A ++ D +  +N + GTP ++APE++        ADMWS+G+    +  
Sbjct: 155 IPHIKLIDFGLAHEIEDGVEFKN-IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS 213
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERATASEMLNH 235
           G  P+        +  I +       E    T E   DF+ + LVK   +R T  E L H
Sbjct: 214 GASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRH 273
Query: 236 EFI 238
            +I
Sbjct: 274 PWI 276

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 37/187 (19%)
Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           Q  + P++VK   S+  N++L++V+EY   G +   +R R    SE          +   
Sbjct: 97  QAVNFPFLVKLEFSFKDNSNLYMVLEYAPGGEMFSHLR-RIGRFSEPHARFYAAQIVLTF 155
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
           EYLH    I+RD                                 LK  N+L++ +G+ K
Sbjct: 156 EYLHSLDLIYRD---------------------------------LKPENLLIDQQGYIK 182
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           +ADFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP+
Sbjct: 183 VADFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPF 239
Query: 182 GDIHPMR 188
               P++
Sbjct: 240 FADQPIQ 246

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 36/182 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL-SEDEIATILCDTLK 59
           +   + P+VVK + ++     L++++++   G +    RL K+ + +E+++   L +   
Sbjct: 84  LADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDL--FTRLSKEVMFTEEDVKFYLAELAL 141
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL++LH    I+RD                                 LK  NILL+ EGH
Sbjct: 142 GLDHLHSLGIIYRD---------------------------------LKPENILLDEEGH 168
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            KL DFG++ +  D   K  +  GT  +MAPEV+   G+   AD WS G+   EM  G  
Sbjct: 169 IKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTGSL 228
Query: 180 PY 181
           P+
Sbjct: 229 PF 230

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 44/247 (17%)
Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           Q    P+++    SY  ++ +++V +    G + D +   K  LSE E  +I+   L+ +
Sbjct: 155 QVAGHPHIITLIDSYESSSFMFLVFDLMRKGELFDYL-TEKVALSEKETRSIMRSLLEAV 213
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            +LH    +HRD                                 LK  NILL+     +
Sbjct: 214 SFLHANNIVHRD---------------------------------LKPENILLDDNMQIR 240
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ------EIGYDCVADMWSLGITALEMA 175
           L+DFG +  L +   K   + GTP ++APE+++        GY    D+W+ G+    + 
Sbjct: 241 LSDFGFSCHL-EPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLL 299
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREP--DVWTPEFIDFVSRCLVKNPEERATASEML 233
            G PP+     +  + MI  +    F  P  D  +    D +SR L  +PE R TA + L
Sbjct: 300 AGSPPFWHRRQILMLRMI-MEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQAL 358
Query: 234 NHEFIQR 240
            H F +R
Sbjct: 359 QHPFFER 365

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADEPIQ 245

>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40 Length = 321

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 40/243 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q     V+  +  Y   TD+ +++E    G + D +  +K++LSE+E  + +   L G
Sbjct: 69  LRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFL-AQKESLSEEEATSFIKQILDG 127
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-- 118
           + YLH ++  H                                 F LK  NI+L  +   
Sbjct: 128 VNYLHTKKIAH---------------------------------FDLKPENIMLLDKNIP 154
Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
             H KL DFG+A ++ D +  +N + GTP ++APE++        ADMWS+G+    +  
Sbjct: 155 IPHIKLIDFGLAHEIEDGVEFKN-IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS 213
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERATASEMLNH 235
           G  P+        +  I         E    T E   DF+ + LVK   +R T  E L H
Sbjct: 214 GASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH 273
Query: 236 EFI 238
            +I
Sbjct: 274 PWI 276

>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form With 8 Monomers In The Asymmetric Unit Length = 321

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 40/243 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q     V+  +  Y   TD+ +++E    G + D +  +K++LSE+E  + +   L G
Sbjct: 69  LRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFL-AQKESLSEEEATSFIKQILDG 127
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-- 118
           + YLH ++  H                                 F LK  NI+L  +   
Sbjct: 128 VNYLHTKKIAH---------------------------------FDLKPENIMLLDKNIP 154
Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
             H KL DFG+A ++ D +  +N + GTP ++APE++        ADMWS+G+    +  
Sbjct: 155 IPHIKLIDFGLAHEIEDGVEFKN-IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS 213
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERATASEMLNH 235
           G  P+        +  I         E    T E   DF+ + LVK   +R T  E L H
Sbjct: 214 GASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH 273
Query: 236 EFI 238
            +I
Sbjct: 274 PWI 276

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N++++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLMIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 KVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 96  LQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 154
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N++++ +G+ 
Sbjct: 155 FEYLHSLDLIYRD---------------------------------LKPENLMIDQQGYI 181
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 182 KVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 239 FFADQPIQ 246

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 88  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 146
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 147 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 173
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 174 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 230
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 231 FFADQPIQ 238

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 41/243 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     S+  +  L  VMEY   G +   +  R++  SED       + +  
Sbjct: 202 LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLS-RERVFSEDRARFYGAEIVSA 260
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  +                             N +Y+ L   K  N++L+ +GH 
Sbjct: 261 LDYLHSEK-----------------------------NVVYRDL---KLENLMLDKDGHI 288
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A   T  GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 289 KITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 348
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    +   +I  +     R P    PE    +S  L K+P++R       A E++ H
Sbjct: 349 FYNQDHEKLFELILME---EIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH 405
Query: 236 EFI 238
            F 
Sbjct: 406 RFF 408

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 41/243 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     S+  +  L  VMEY   G +   +  R++  SED       + +  
Sbjct: 205 LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLS-RERVFSEDRARFYGAEIVSA 263
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  +                             N +Y+ L   K  N++L+ +GH 
Sbjct: 264 LDYLHSEK-----------------------------NVVYRDL---KLENLMLDKDGHI 291
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A   T  GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 292 KITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 351
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    +   +I  +     R P    PE    +S  L K+P++R       A E++ H
Sbjct: 352 FYNQDHEKLFELILME---EIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH 408
Query: 236 EFI 238
            F 
Sbjct: 409 RFF 411

>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik) Length = 371

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 95/233 (40%), Gaps = 40/233 (17%)
Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           SP +V  YG+  +   + I ME    GS+  +++  +  L ED     L   L+GLEYLH
Sbjct: 144 SPRIVPLYGAVREGPWVNIFMELLEGGSLGQLVK-EQGCLPEDRALYYLGQALEGLEYLH 202
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLAD 124
            RR +H D+KA                                  N+LL+++G HA L D
Sbjct: 203 SRRILHGDVKAD---------------------------------NVLLSSDGSHAALCD 229
Query: 125 FGVA-----GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
           FG A       L  ++   + + GT   MAPEV+     D   D+WS     L M  G  
Sbjct: 230 FGHAVCLQPDGLGKSLLTGDYIPGTETHMAPEVVLGRSCDAKVDVWSSCCMMLHMLNGCH 289
Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
           P+           I ++PPP    P    P     +   L K P  R +A+E+
Sbjct: 290 PWTQFFRGPLCLKIASEPPPVREIPPSCAPLTAQAIQEGLRKEPIHRVSAAEL 342

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   +MA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYQMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 96  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 154
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 155 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 181
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 182 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 239 FFADQPIQ 246

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 96  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 154
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 155 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 181
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 182 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 239 FFADQPIQ 246

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 103/243 (42%), Gaps = 35/243 (14%)
Query: 1   MQQCDSPYVVKYYGSYF--KNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILC 55
           +++   P +V+YY       NT L+IVMEYC  G ++ ++      ++ L E+ +  ++ 
Sbjct: 59  LRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMT 118
Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
                L      ++ HR    G   L  D                      LK  N+ L+
Sbjct: 119 QLTLAL------KECHRRSDGGHTVLHRD----------------------LKPANVFLD 150
Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
            + + KL DFG+A  L    +   T +GTP++M+PE +  + Y+  +D+WSLG    E+ 
Sbjct: 151 GKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELC 210
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
              PP+           I  +     R P  ++ E  + ++R L      R +  E+L +
Sbjct: 211 ALMPPFTAFSQKELAGKI--REGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILEN 268
Query: 236 EFI 238
             I
Sbjct: 269 PLI 271

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    +E          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFAEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 96  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 154
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 155 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 181
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 182 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 239 FFADQPIQ 246

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 96  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 154
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 155 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 181
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 182 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 239 FFADQPIQ 246

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N++++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLIIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIIISKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 116 LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 174
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 175 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 201
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 202 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 258
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 259 FFADQPIQ 266

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N++++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLMIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG+A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGLAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEYSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 48/224 (21%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILC-DTLKGLEYLH 65
           P++++ +G++     ++++M+Y   G +  +  LRK     + +A     +    LEYLH
Sbjct: 66  PFIIRMWGTFQDAQQIFMIMDYIEGGELFSL--LRKSQRFPNPVAKFYAAEVCLALEYLH 123
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +  I+RD                                 LK  NILL+  GH K+ DF
Sbjct: 124 SKDIIYRD---------------------------------LKPENILLDKNGHIKITDF 150
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH 185
           G A  + D       + GTP ++APEV+    Y+   D WS GI   EM  G  P+ D +
Sbjct: 151 GFAKYVPDVTY---XLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN 207
Query: 186 PMRA---IFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
            M+    I     + PP F E      +  D +SR + ++  +R
Sbjct: 208 TMKTYEKILNAELRFPPFFNE------DVKDLLSRLITRDLSQR 245

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G    +++  +K  S DE  T     + +
Sbjct: 86  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGC---LLKYIRKIGSFDETCTRFYTAEIV 142
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 143 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 169
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N+ +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 170 HIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSASKSSDLWALGCIIYQLVA 229
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 230 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 284
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 285 YGPLKAH 291

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R     E          +  
Sbjct: 90  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFXEPHARFYAAQIVLT 148
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 149 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 175
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 176 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 232
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 233 FFADQPIQ 240

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N++++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLMIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|2J90|A Chain A, Crystal Structure Of Human Zip Kinase In Complex With A Tetracyclic Pyridone Inhibitor (pyridone 6) Length = 304

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 32/240 (13%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P ++  +  +   TD+ +++E    G + D +   K++L+EDE    L   L G
Sbjct: 83  LREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFL-AEKESLTEDEATQFLKQILDG 141
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH +R  H D+K     ++ D+        NV   +I                    
Sbjct: 142 VHYLHSKRIAHFDLKP-ENIMLLDK--------NVPNPRI-------------------- 172
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG+A ++      +N + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 173 KLIDFGIAHKIEAGNEFKN-IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 231
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERATASEMLNHEFIQ 239
           +        +  I         E    T E   DF+ R LVK+P+ R   ++ L H +I+
Sbjct: 232 FLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMXIAQSLEHSWIK 291

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R     E          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFXEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP  +APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R     E          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFXEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R     E          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFXEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 83  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 139
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 140 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 166
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N+ +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 167 HIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 226
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 227 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 281
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 282 YGPLKAH 288

>pdb|4DN5|A Chain A, Crystal Structure Of Nf-kb-inducing Kinase (nik) Length = 356

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 96/233 (41%), Gaps = 40/233 (17%)
Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           SP +V  YG+  +   + I ME    GS+  +++  +  L ED     L   L+GLEYLH
Sbjct: 125 SPRIVPLYGAVREGPWVNIFMELLEGGSLGQLVK-EQGCLPEDRALYYLGQALEGLEYLH 183
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLAD 124
            RR +H D+KA                                  N+LL+++G HA L D
Sbjct: 184 SRRILHGDVKAD---------------------------------NVLLSSDGSHAALCD 210
Query: 125 FGVAGQLT-DTMAK----RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
           FG A  L  D + K     + + GT   MAPEV+     D   D+WS     L M  G  
Sbjct: 211 FGHAVCLQPDGLGKDLLTGDYIPGTETHMAPEVVLGRSCDAKVDVWSSCCMMLHMLNGCH 270
Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
           P+           I ++PPP    P    P     +   L K P  R +A+E+
Sbjct: 271 PWTQFFRGPLCLKIASEPPPVREIPPSCAPLTAQAIQEGLRKEPIHRVSAAEL 323

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 87  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 143
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 144 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 170
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N+ +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 171 HIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 230
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 231 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 285
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 286 YGPLKAH 292

>pdb|1YRP|A Chain A, Catalytic Domain Of Human Zip Kinase Phosphorylated At Thr265 Length = 278

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 32/240 (13%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P ++  +  +   TD+ +++E    G + D +   K++L+EDE    L   L G
Sbjct: 69  LREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFL-AEKESLTEDEATQFLKQILDG 127
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH +R  H D+K     ++ D+        NV   +I                    
Sbjct: 128 VHYLHSKRIAHFDLKP-ENIMLLDK--------NVPNPRI-------------------- 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG+A ++      +N + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 159 KLIDFGIAHKIEAGNEFKN-IFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 217
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERATASEMLNHEFIQ 239
           +        +  I         E    T E   DF+ R LVK+P+ R   ++ L H +I+
Sbjct: 218 FLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMXIAQSLEHSWIK 277

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R     E          +  
Sbjct: 116 LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFXEPHARFYAAQIVLT 174
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 175 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 201
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 202 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 258
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 259 FFADQPIQ 266

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 41/243 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     S+  +  L  VMEY   G +   +  R++  SED       + +  
Sbjct: 62  LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLS-RERVFSEDRARFYGAEIVSA 120
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  +                             N +Y+ L   K  N++L+ +GH 
Sbjct: 121 LDYLHSEK-----------------------------NVVYRDL---KLENLMLDKDGHI 148
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A      GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 149 KITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 208
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    +   +I  +     R P    PE    +S  L K+P++R       A E++ H
Sbjct: 209 FYNQDHEKLFELILME---EIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH 265
Query: 236 EFI 238
            F 
Sbjct: 266 RFF 268

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 53/250 (21%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 86  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 142
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 143 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 169
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 170 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSAXKSSDLWALGCIIYQLVA 229
Query: 177 GKPPYGDIHPMRA-----IFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
           G PP+      RA     IF    K    F  P+ + P+  D V + LV +  +R    E
Sbjct: 230 GLPPF------RAGNEGLIFAKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEE 281
Query: 232 MLNHEFIQRH 241
           M  +  ++ H
Sbjct: 282 MEGYGPLKAH 291

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 41/243 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     S+  +  L  VMEY   G +   +  R++  SED       + +  
Sbjct: 64  LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLS-RERVFSEDRARFYGAEIVSA 122
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  +                             N +Y+ L   K  N++L+ +GH 
Sbjct: 123 LDYLHSEK-----------------------------NVVYRDL---KLENLMLDKDGHI 150
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A      GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 151 KITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 210
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    +   +I  +     R P    PE    +S  L K+P++R       A E++ H
Sbjct: 211 FYNQDHEKLFELILME---EIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH 267
Query: 236 EFI 238
            F 
Sbjct: 268 RFF 270

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 46/251 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ + P ++K   ++F   D +IV+E    G + D + +  K L E          L  
Sbjct: 208 LKKLNHPCIIKI-KNFFDAEDYYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLA 265
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH- 119
           ++YLH    IHRD                                 LK  N+LL+++   
Sbjct: 266 VQYLHENGIIHRD---------------------------------LKPENVLLSSQEED 292
Query: 120 --AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI---GYDCVADMWSLGITALEM 174
              K+ DFG +  L +T   R T+ GTP ++APEV+  +   GY+   D WSLG+     
Sbjct: 293 CLIKITDFGHSKILGETSLMR-TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFIC 351
Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASE 231
             G PP+ +     ++    T    +F  P+VW   + + +D V + LV +P+ R T  E
Sbjct: 352 LSGYPPFSEHRTQVSLKDQITSGKYNFI-PEVWAEVSEKALDLVKKLLVVDPKARFTTEE 410
Query: 232 MLNHEFIQRHD 242
            L H ++Q  D
Sbjct: 411 ALRHPWLQDED 421

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++AP +I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPAIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++ K   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 96  LQAVNFPFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 154
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N++++ +G+ 
Sbjct: 155 FEYLHSLDLIYRD---------------------------------LKPENLMIDQQGYI 181
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 182 KVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 239 FFADQPIQ 246

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 100/243 (41%), Gaps = 41/243 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     S+  +  L  VMEY   G +   +  R++  SED       + +  
Sbjct: 63  LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLS-RERVFSEDRARFYGAEIVSA 121
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  +                             N +Y+ L   K  N++L+ +GH 
Sbjct: 122 LDYLHSEK-----------------------------NVVYRDL---KLENLMLDKDGHI 149
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A      GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 150 KITDFGLCKEGIKDGATMKXFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 209
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    +   +I  +     R P    PE    +S  L K+P++R       A E++ H
Sbjct: 210 FYNQDHEKLFELILME---EIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQH 266
Query: 236 EFI 238
            F 
Sbjct: 267 RFF 269

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++ K   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 96  LQAVNFPFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 154
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N++++ +G+ 
Sbjct: 155 FEYLHSLDLIYRD---------------------------------LKPENLMIDQQGYI 181
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 182 KVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 239 FFADQPIQ 246

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R     E          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYAPGGEMFSHLR-RIGRFXEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N++++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLMIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 KVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 47/239 (19%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P+++K Y      +D+++VMEY   G + D +  +   L E E   +    L G++Y H 
Sbjct: 76  PHIIKLYQVISTPSDIFMVMEYVSGGELFDYI-CKNGRLDEKESRRLFQQILSGVDYCHR 134
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              +HRD                                 LK  N+LL+   +AK+ADFG
Sbjct: 135 HMVVHRD---------------------------------LKPENVLLDAHMNAKIADFG 161
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGDIH 185
           ++  ++D    R +  G+P + APEVI    Y     D+WS G+    +  G  P+ D H
Sbjct: 162 LSNMMSDGEFLRXSC-GSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDH 220
Query: 186 PMRAIFMIPTKPPP----SFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
                  +PT         F  P    P  I  +   L  +P +RAT  ++  HE+ ++
Sbjct: 221 -------VPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQ 272

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R     E          +  
Sbjct: 88  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFXEPHARFYAAQIVLT 146
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 147 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 173
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 174 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 230
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 231 FFADQPIQ 238

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 84  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 140
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 141 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 167
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 168 HIQITDFGTAKVLSPESKQARANAFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 227
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 228 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 282
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 283 YGPLKAH 289

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 46/251 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ + P ++K   ++F   D +IV+E    G + D + +  K L E          L  
Sbjct: 194 LKKLNHPCIIKI-KNFFDAEDYYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLA 251
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH- 119
           ++YLH    IHRD                                 LK  N+LL+++   
Sbjct: 252 VQYLHENGIIHRD---------------------------------LKPENVLLSSQEED 278
Query: 120 --AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI---GYDCVADMWSLGITALEM 174
              K+ DFG +  L +T   R T+ GTP ++APEV+  +   GY+   D WSLG+     
Sbjct: 279 CLIKITDFGHSKILGETSLMR-TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFIC 337
Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASE 231
             G PP+ +     ++    T    +F  P+VW   + + +D V + LV +P+ R T  E
Sbjct: 338 LSGYPPFSEHRTQVSLKDQITSGKYNFI-PEVWAEVSEKALDLVKKLLVVDPKARFTTEE 396
Query: 232 MLNHEFIQRHD 242
            L H ++Q  D
Sbjct: 397 ALRHPWLQDED 407

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 68  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 124
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 125 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 151
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 152 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 211
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 212 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 266
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 267 YGPLKAH 273

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 83  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 139
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 140 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 166
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 167 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 226
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 227 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 281
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 282 YGPLKAH 288

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 61  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 117
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 118 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 144
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 145 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 204
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 205 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 259
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 260 YGPLKAH 266

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 86  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 142
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 143 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 169
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 170 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 229
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 230 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 284
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 285 YGPLKAH 291

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 86  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 142
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 143 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 169
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 170 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 229
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 230 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 284
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 285 YGPLKAH 291

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 62  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 118
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 119 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 145
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 146 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 205
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 206 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 260
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 261 YGPLKAH 267

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 84  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 140
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 141 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 167
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 168 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 227
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 228 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 282
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 283 YGPLKAH 289

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 84  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 140
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 141 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 167
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 168 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 227
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 228 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 282
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 283 YGPLKAH 289

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 46/251 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ + P ++K   ++F   D +IV+E    G + D + +  K L E          L  
Sbjct: 68  LKKLNHPCIIKI-KNFFDAEDYYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLA 125
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH- 119
           ++YLH    IHRD                                 LK  N+LL+++   
Sbjct: 126 VQYLHENGIIHRD---------------------------------LKPENVLLSSQEED 152
Query: 120 --AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI---GYDCVADMWSLGITALEM 174
              K+ DFG +  L +T   R T+ GTP ++APEV+  +   GY+   D WSLG+     
Sbjct: 153 CLIKITDFGHSKILGETSLMR-TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFIC 211
Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASE 231
             G PP+ +     ++    T    +F  P+VW   + + +D V + LV +P+ R T  E
Sbjct: 212 LSGYPPFSEHRTQVSLKDQITSGKYNFI-PEVWAEVSEKALDLVKKLLVVDPKARFTTEE 270
Query: 232 MLNHEFIQRHD 242
            L H ++Q  D
Sbjct: 271 ALRHPWLQDED 281

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 84  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 140
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 141 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 167
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 168 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 227
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 228 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 282
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 283 YGPLKAH 289

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R     E          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFXEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 86  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 142
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 143 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 169
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 170 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 229
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 230 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 284
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 285 YGPLKAH 291

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R     E          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFXEPHARFYAAQIVLT 153
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 180
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 238 FFADQPIQ 245

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R     E          +  
Sbjct: 96  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVPGGEMFSHLR-RIGRFXEPHARFYAAQIVLT 154
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N+L++ +G+ 
Sbjct: 155 FEYLHSLDLIYRD---------------------------------LKPENLLIDQQGYI 181
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 182 QVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 239 FFADQPIQ 246

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 35/243 (14%)
Query: 1   MQQCDSPYVVKYYGSYF--KNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILC 55
           +++   P +V+YY       NT L+IVMEYC  G ++ ++      ++ L E+ +  ++ 
Sbjct: 59  LRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMT 118
Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
                L      ++ HR    G   L  D                      LK  N+ L+
Sbjct: 119 QLTLAL------KECHRRSDGGHTVLHRD----------------------LKPANVFLD 150
Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
            + + KL DFG+A  L    +     +GTP++M+PE +  + Y+  +D+WSLG    E+ 
Sbjct: 151 GKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELC 210
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
              PP+           I  +     R P  ++ E  + ++R L      R +  E+L +
Sbjct: 211 ALMPPFTAFSQKELAGKI--REGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILEN 268
Query: 236 EFI 238
             I
Sbjct: 269 PLI 271

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 87  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 143
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 144 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 170
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 171 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 230
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 231 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 285
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 286 YGPLKAH 292

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 46/251 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ + P ++K   ++F   D +IV+E    G + D + +  K L E          L  
Sbjct: 69  LKKLNHPCIIKI-KNFFDAEDYYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLA 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH- 119
           ++YLH    IHRD                                 LK  N+LL+++   
Sbjct: 127 VQYLHENGIIHRD---------------------------------LKPENVLLSSQEED 153
Query: 120 --AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI---GYDCVADMWSLGITALEM 174
              K+ DFG +  L +T   R T+ GTP ++APEV+  +   GY+   D WSLG+     
Sbjct: 154 CLIKITDFGHSKILGETSLMR-TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFIC 212
Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASE 231
             G PP+ +     ++    T    +F  P+VW   + + +D V + LV +P+ R T  E
Sbjct: 213 LSGYPPFSEHRTQVSLKDQITSGKYNFI-PEVWAEVSEKALDLVKKLLVVDPKARFTTEE 271
Query: 232 MLNHEFIQRHD 242
            L H ++Q  D
Sbjct: 272 ALRHPWLQDED 282

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 63  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 119
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 120 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 146
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 147 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 206
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 207 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 261
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 262 YGPLKAH 268

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 46/251 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ + P ++K   ++F   D +IV+E    G + D + +  K L E          L  
Sbjct: 69  LKKLNHPCIIKI-KNFFDAEDYYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLA 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH- 119
           ++YLH    IHRD                                 LK  N+LL+++   
Sbjct: 127 VQYLHENGIIHRD---------------------------------LKPENVLLSSQEED 153
Query: 120 --AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI---GYDCVADMWSLGITALEM 174
              K+ DFG +  L +T   R T+ GTP ++APEV+  +   GY+   D WSLG+     
Sbjct: 154 CLIKITDFGHSKILGETSLMR-TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFIC 212
Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASE 231
             G PP+ +     ++    T    +F  P+VW   + + +D V + LV +P+ R T  E
Sbjct: 213 LSGYPPFSEHRTQVSLKDQITSGKYNFI-PEVWAEVSEKALDLVKKLLVVDPKARFTTEE 271
Query: 232 MLNHEFIQRHD 242
            L H ++Q  D
Sbjct: 272 ALRHPWLQDED 282

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 46/251 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ + P ++K   ++F   D +IV+E    G + D + +  K L E          L  
Sbjct: 69  LKKLNHPCIIKI-KNFFDAEDYYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLA 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH- 119
           ++YLH    IHRD                                 LK  N+LL+++   
Sbjct: 127 VQYLHENGIIHRD---------------------------------LKPENVLLSSQEED 153
Query: 120 --AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI---GYDCVADMWSLGITALEM 174
              K+ DFG +  L +T   R T+ GTP ++APEV+  +   GY+   D WSLG+     
Sbjct: 154 CLIKITDFGHSKILGETSLMR-TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFIC 212
Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASE 231
             G PP+ +     ++    T    +F  P+VW   + + +D V + LV +P+ R T  E
Sbjct: 213 LSGYPPFSEHRTQVSLKDQITSGKYNFI-PEVWAEVSEKALDLVKKLLVVDPKARFTTEE 271
Query: 232 MLNHEFIQRHD 242
            L H ++Q  D
Sbjct: 272 ALRHPWLQDED 282

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 64  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 120
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 121 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 147
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 148 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 207
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 208 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 262
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 263 YGPLKAH 269

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 44/248 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  + P +VK +        L+++MEY   G V D + +    + E E  +     +  
Sbjct: 65  MKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYL-VAHGRMKEKEARSKFRQIVSA 123
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++Y H +R +HRD                                 LKA N+LL+ + + 
Sbjct: 124 VQYCHQKRIVHRD---------------------------------LKAENLLLDADMNI 150
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKP 179
           K+ADFG + + T    K +T  G+P + APE+ Q   YD    D+WSLG+    +  G  
Sbjct: 151 KIADFGFSNEFT-VGGKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSL 209
Query: 180 PYG--DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           P+   ++  +R   +        +R P   + +  + + R LV NP +R T  +++   +
Sbjct: 210 PFDGQNLKELRERVL-----RGKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRW 264
Query: 238 IQR-HDTD 244
           I   H+ D
Sbjct: 265 INAGHEED 272

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 47/246 (19%)
Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           SP++V  + ++   T L ++++Y   G +   +  R++  +E E+   + + +  LE+LH
Sbjct: 118 SPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRER-FTEHEVQIYVGEIVLALEHLH 176
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
               I+RDIK                                   NILL++ GH  L DF
Sbjct: 177 KLGIIYRDIKLE---------------------------------NILLDSNGHVVLTDF 203
Query: 126 GVAGQ-LTDTMAKRNTVIGTPFWMAPEVIQ--EIGYDCVADMWSLGITALEMAEGKPPY- 181
           G++ + + D   +     GT  +MAP++++  + G+D   D WSLG+   E+  G  P+ 
Sbjct: 204 GLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFT 263
Query: 182 --GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLN 234
             G+ +    I     K  P +  P   +    D + R L+K+P++R       A E+  
Sbjct: 264 VDGEKNSQAEISRRILKSEPPY--PQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKE 321
Query: 235 HEFIQR 240
           H F Q+
Sbjct: 322 HLFFQK 327

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 53/250 (21%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 86  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 142
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 143 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 169
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 170 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 229
Query: 177 GKPPYGDIHPMRA-----IFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
           G PP+      RA     IF    K    F  P+ + P+  D V + LV +  +R    E
Sbjct: 230 GLPPF------RAGNEGLIFAKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEE 281
Query: 232 MLNHEFIQRH 241
           M  +  ++ H
Sbjct: 282 MEGYGPLKAH 291

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 46/251 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ + P ++K   ++F   D +IV+E    G + D + +  K L E          L  
Sbjct: 75  LKKLNHPCIIKI-KNFFDAEDYYIVLELMEGGELFDKV-VGNKRLKEATCKLYFYQMLLA 132
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH- 119
           ++YLH    IHRD                                 LK  N+LL+++   
Sbjct: 133 VQYLHENGIIHRD---------------------------------LKPENVLLSSQEED 159
Query: 120 --AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI---GYDCVADMWSLGITALEM 174
              K+ DFG +  L +T   R T+ GTP ++APEV+  +   GY+   D WSLG+     
Sbjct: 160 CLIKITDFGHSKILGETSLMR-TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFIC 218
Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASE 231
             G PP+ +     ++    T    +F  P+VW   + + +D V + LV +P+ R T  E
Sbjct: 219 LSGYPPFSEHRTQVSLKDQITSGKYNFI-PEVWAEVSEKALDLVKKLLVVDPKARFTTEE 277
Query: 232 MLNHEFIQRHD 242
            L H ++Q  D
Sbjct: 278 ALRHPWLQDED 288

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y ++  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 89  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 145
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 146 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 172
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 173 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 232
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P  + P+  D V + LV +  +R    EM  
Sbjct: 233 GLPPFRAGNEY---LIFQKIIKLEYDF--PAAFFPKARDLVEKLLVLDATKRLGCEEMEG 287
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 288 YGPLKAH 294

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 47/247 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTL 58
           M + D P+ VK Y  +  +  L+  + Y   G   ++++  +K  S DE  T     + +
Sbjct: 91  MSRLDHPFFVKLYFCFQDDEKLYFGLSYAKNG---ELLKYIRKIGSFDETCTRFYTAEIV 147
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             LEYLH +  IHRD                                 LK  NILLN + 
Sbjct: 148 SALEYLHGKGIIHRD---------------------------------LKPENILLNEDM 174
Query: 119 HAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           H ++ DFG A  L+     A+ N  +GT  +++PE++ E      +D+W+LG    ++  
Sbjct: 175 HIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVA 234
Query: 177 GKPPY--GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G PP+  G+ +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 235 GLPPFRAGNEY---LIFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 289
Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 290 YGPLKAH 296

>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant Length = 334

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 40/251 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL-AEKESLTEEEATEFLKQILNG 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 127 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 158 KIIDFGLAHKI-DFGNEFKNIFGTPAFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 217 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272
Query: 236 EFIQRHDTDPS 246
            +I+  DT  +
Sbjct: 273 PWIKPKDTQQA 283

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++ K   S+  N++L++VMEY   G +   +R R     E          +  
Sbjct: 96  LQAVNFPFLTKLEFSFKDNSNLYMVMEYAPGGEMFSHLR-RIGRFXEPHARFYAAQIVLT 154
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD                                 LK  N++++ +G+ 
Sbjct: 155 FEYLHSLDLIYRD---------------------------------LKPENLMIDQQGYI 181
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG A ++     +   + GTP ++APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 182 KVTDFGFAKRVK---GRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
Query: 181 YGDIHPMR 188
           +    P++
Sbjct: 239 FFADQPIQ 246

>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In Complex With A Ruthenium Octasporine Ligand (Osv) Length = 285

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 40/248 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNG 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 127 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 158 KIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 217 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272
Query: 236 EFIQRHDT 243
            +I+  DT
Sbjct: 273 PWIKPKDT 280

>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302 Length = 302

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 40/251 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL-AEKESLTEEEATEFLKQILNG 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 127 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 158 KIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 217 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272
Query: 236 EFIQRHDTDPS 246
            +I+  DT  +
Sbjct: 273 PWIKPKDTQQA 283

>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304 Length = 326

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 40/251 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL-AEKESLTEEEATEFLKQILNG 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 127 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 158 KIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 217 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272
Query: 236 EFIQRHDTDPS 246
            +I+  DT  +
Sbjct: 273 PWIKPKDTQQA 283

>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312 Length = 312

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 40/251 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL-AEKESLTEEEATEFLKQILNG 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 127 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 158 KIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 217 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272
Query: 236 EFIQRHDTDPS 246
            +I+  DT  +
Sbjct: 273 PWIKPKDTQQA 283

>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase In Complex With Amppnp And Mg2+ Length = 295

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 40/248 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL-AEKESLTEEEATEFLKQILNG 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 127 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 158 KIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 217 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272
Query: 236 EFIQRHDT 243
            +I+  DT
Sbjct: 273 PWIKPKDT 280

>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The Death Associated Protein Kinase Catalytic Domain With Amppnp Length = 295

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 40/248 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL-AEKESLTEEEATEFLKQILNG 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 127 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 158 KIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 217 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272
Query: 236 EFIQRHDT 243
            +I+  DT
Sbjct: 273 PWIKPKDT 280

>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic Domain Of Death-Associated Protein Kinase With Atp Analogue And Mn. Length = 294

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 40/248 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 67  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL-AEKESLTEEEATEFLKQILNG 125
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 126 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 156
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 157 KIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 215
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 216 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 271
Query: 236 EFIQRHDT 243
            +I+  DT
Sbjct: 272 PWIKPKDT 279

>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp Length = 295

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 40/248 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNG 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 127 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 158 KIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 217 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272
Query: 236 EFIQRHDT 243
            +I+  DT
Sbjct: 273 PWIKPKDT 280

>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex Length = 334

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 40/251 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL-AEKESLTEEEATEFLKQILNG 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 127 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 158 KIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 217 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272
Query: 236 EFIQRHDTDPS 246
            +I+  DT  +
Sbjct: 273 PWIKPKDTQQA 283

>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With Bound Inhibitor Fragment Length = 293

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 40/248 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 67  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFL-AEKESLTEEEATEFLKQILNG 125
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 126 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 156
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 157 KIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 215
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 216 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 271
Query: 236 EFIQRHDT 243
            +I+  DT
Sbjct: 272 PWIKPKDT 279

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 105/238 (44%), Gaps = 38/238 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR--KKTLSEDEIATILCDTL 58
           M++   P +V + G+  +  +L IV EY   GS+  ++     ++ L E    ++  D  
Sbjct: 88  MKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVA 147
Query: 59  KGLEYLHLRRK--IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
           KG+ YLH R    +HR+                                 LK+ N+L++ 
Sbjct: 148 KGMNYLHNRNPPIVHRN---------------------------------LKSPNLLVDK 174
Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           +   K+ DFG++     T     +  GTP WMAPEV+++   +  +D++S G+   E+A 
Sbjct: 175 KYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELAT 234
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
            + P+G+++P + +  +  K       P    P+    +  C    P +R + + +++
Sbjct: 235 LQQPWGNLNPAQVVAAVGFK-CKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMD 291

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 35/243 (14%)
Query: 1   MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILC 55
           +++   P +V+YY       NT L+IVMEYC  G ++ ++      ++ L E+ +  ++ 
Sbjct: 59  LRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMT 118
Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
                L      ++ HR    G   L  D                      LK  N+ L+
Sbjct: 119 QLTLAL------KECHRRSDGGHTVLHRD----------------------LKPANVFLD 150
Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
            + + KL DFG+A  L          +GTP++M+PE +  + Y+  +D+WSLG    E+ 
Sbjct: 151 GKQNVKLGDFGLARILNHDEDFAKEFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELC 210
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
              PP+           I  +     R P  ++ E  + ++R L      R +  E+L +
Sbjct: 211 ALMPPFTAFSQKELAGKI--REGKFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILEN 268
Query: 236 EFI 238
             I
Sbjct: 269 PLI 271

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 34/180 (18%)
Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           Q  + P++V  +  +   + L+ V+EY   G +   M+ R++ L E+       +    L
Sbjct: 108 QASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQ-RQRKLPEEHARFYSAEISLAL 166
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            YLH R  I+RD                                 LK  N+LL++EGH K
Sbjct: 167 NYLHERGIIYRD---------------------------------LKLDNVLLDSEGHIK 193
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           L D+G+  +        +T  GTP ++APE+++   Y    D W+LG+   EM  G+ P+
Sbjct: 194 LTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF 253

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 45/247 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLK 59
           +++   P++V    ++     L++++EY   G +   M+L R+    ED     L +   
Sbjct: 75  LEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGEL--FMQLEREGIFMEDTACFYLAEISM 132
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            L +LH +  I+RD                                 LK  NI+LN +GH
Sbjct: 133 ALGHLHQKGIIYRD---------------------------------LKPENIMLNHQGH 159
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            KL DFG+  +        +T  GT  +MAPE++   G++   D WSLG    +M  G P
Sbjct: 160 VKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAP 219
Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLN 234
           P+   +  + I  I          P   T E  D + + L +N   R       A E+  
Sbjct: 220 PFTGENRKKTIDKILK---CKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276
Query: 235 HEFIQRH 241
           H F  RH
Sbjct: 277 HPFF-RH 282

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 105/248 (42%), Gaps = 44/248 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  + P +VK +        L+++MEY   G V D + +    + E E  +     +  
Sbjct: 68  MKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYL-VAHGRMKEKEARSKFRQIVSA 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++Y H +R +HRD                                 LKA N+LL+ + + 
Sbjct: 127 VQYCHQKRIVHRD---------------------------------LKAENLLLDADMNI 153
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKP 179
           K+ADFG + + T    K +   G P + APE+ Q   YD    D+WSLG+    +  G  
Sbjct: 154 KIADFGFSNEFT-VGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSL 212
Query: 180 PYG--DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           P+   ++  +R   +        +R P   + +  + + R LV NP +R T  +++   +
Sbjct: 213 PFDGQNLKELRERVL-----RGKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRW 267
Query: 238 IQR-HDTD 244
           I   H+ D
Sbjct: 268 INAGHEED 275

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 106/238 (44%), Gaps = 33/238 (13%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDI-MRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P V+  +  Y   +++ +++EY   G +  + +    + +SE+++  ++   L+G+ YLH
Sbjct: 89  PRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH 148
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
               +H D+K                  N++ + IY                G  K+ DF
Sbjct: 149 QNNIVHLDLKPQ----------------NILLSSIYPL--------------GDIKIVDF 178
Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY-GDI 184
           G++ ++      R  ++GTP ++APE++         DMW++GI A  +     P+ G+ 
Sbjct: 179 GMSRKIGHACELRE-IMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGED 237
Query: 185 HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD 242
           +    + +       S       +    DF+   LVKNPE+R TA   L+H ++Q+ D
Sbjct: 238 NQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQQWD 295

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 103/238 (43%), Gaps = 38/238 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR--KKTLSEDEIATILCDTL 58
           M++   P +V + G+  +  +L IV EY   GS+  ++     ++ L E    ++  D  
Sbjct: 88  MKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVA 147
Query: 59  KGLEYLHLRRK--IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
           KG+ YLH R    +HRD                                 LK+ N+L++ 
Sbjct: 148 KGMNYLHNRNPPIVHRD---------------------------------LKSPNLLVDK 174
Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           +   K+ DFG++              GTP WMAPEV+++   +  +D++S G+   E+A 
Sbjct: 175 KYTVKVCDFGLSRLKASXFLXSKXAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELAT 234
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
            + P+G+++P + +  +  K       P    P+    +  C    P +R + + +++
Sbjct: 235 LQQPWGNLNPAQVVAAVGFK-CKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMD 291

>pdb|3GU8|A Chain A, Crystal Structure Of Dapkl93g With N6-Cyclopentyladenosine Length = 295

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 109/248 (43%), Gaps = 40/248 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ ++ E    G + D +   K++L+E+E    L   L G
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILIGELVAGGELFDFL-AEKESLTEEEATEFLKQILNG 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 127 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 158 KIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 217 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272
Query: 236 EFIQRHDT 243
            +I+  DT
Sbjct: 273 PWIKPKDT 280

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 40/230 (17%)
Query: 23  WIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV 82
           +IVMEY    ++ DI+        +  I  ++ D  + L + H    IHRD+K       
Sbjct: 92  YIVMEYVDGVTLRDIVHTEGPMTPKRAI-EVIADACQALNFSHQNGIIHRDVKPA----- 145
Query: 83  YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRN 139
                                       NIL++     K+ DFG+A  + D+   + +  
Sbjct: 146 ----------------------------NILISATNAVKVVDFGIARAIADSGNSVXQTA 177
Query: 140 TVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM-IPTKP- 197
            VIGT  +++PE  +    D  +D++SLG    E+  G+PP+    P+   +  +   P 
Sbjct: 178 AVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPI 237
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ 247
           PPS R  +  + +    V + L KNPE R   +  +  + ++ H+ +P +
Sbjct: 238 PPSARH-EGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPE 286

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 34/180 (18%)
Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           Q  + P++V  +  +   + L+ V+EY   G +   M+ R++ L E+       +    L
Sbjct: 61  QASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQ-RQRKLPEEHARFYSAEISLAL 119
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            YLH R  I+RD                                 LK  N+LL++EGH K
Sbjct: 120 NYLHERGIIYRD---------------------------------LKLDNVLLDSEGHIK 146
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           L D+G+  +        +   GTP ++APE+++   Y    D W+LG+   EM  G+ P+
Sbjct: 147 LTDYGMCKEGLRPGDTTSXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF 206

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 34/180 (18%)
Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           Q  + P++V  +  +   + L+ V+EY   G +   M+ R++ L E+       +    L
Sbjct: 65  QASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQ-RQRKLPEEHARFYSAEISLAL 123
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            YLH R  I+RD                                 LK  N+LL++EGH K
Sbjct: 124 NYLHERGIIYRD---------------------------------LKLDNVLLDSEGHIK 150
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           L D+G+  +        +   GTP ++APE+++   Y    D W+LG+   EM  G+ P+
Sbjct: 151 LTDYGMCKEGLRPGDTTSXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF 210

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 99/251 (39%), Gaps = 48/251 (19%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEIATILCDTLKGLEY 63
           + P++   + ++    +L+ VMEY   G +   I    K  LS         + + GL++
Sbjct: 77  EHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYA--AEIILGLQF 134
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
           LH +  ++RD                                 LK  NILL+ +GH K+A
Sbjct: 135 LHSKGIVYRD---------------------------------LKLDNILLDKDGHIKIA 161
Query: 124 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD 183
           DFG+  +     AK N   GTP ++APE++    Y+   D WS G+   EM  G+ P+  
Sbjct: 162 DFGMCKENMLGDAKTNEFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHG 221
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS---------EMLN 234
                    I    P     P     E  D + +  V+ PE+R               +N
Sbjct: 222 QDEEELFHSIRMDNPFY---PRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREIN 278
Query: 235 HEFIQRHDTDP 245
            E ++R + DP
Sbjct: 279 WEELERKEIDP 289

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 99/251 (39%), Gaps = 48/251 (19%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEIATILCDTLKGLEY 63
           + P++   + ++    +L+ VMEY   G +   I    K  LS         + + GL++
Sbjct: 76  EHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYA--AEIILGLQF 133
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
           LH +  ++RD                                 LK  NILL+ +GH K+A
Sbjct: 134 LHSKGIVYRD---------------------------------LKLDNILLDKDGHIKIA 160
Query: 124 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD 183
           DFG+  +     AK N   GTP ++APE++    Y+   D WS G+   EM  G+ P+  
Sbjct: 161 DFGMCKENMLGDAKTNXFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHG 220
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS---------EMLN 234
                    I    P     P     E  D + +  V+ PE+R               +N
Sbjct: 221 QDEEELFHSIRMDNPFY---PRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREIN 277
Query: 235 HEFIQRHDTDP 245
            E ++R + DP
Sbjct: 278 WEELERKEIDP 288

>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277 Length = 277

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 40/244 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNG 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 127 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 158 KIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 217 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272
Query: 236 EFIQ 239
            +I+
Sbjct: 273 PWIK 276

>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In Complex With Small Molecular Inhibitors Length = 278

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 40/244 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNG 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH  +  H D+K     ++ DR        NV   +I                    
Sbjct: 127 VYYLHSLQIAHFDLKP-ENIMLLDR--------NVPKPRI-------------------- 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  G  P
Sbjct: 158 KIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASP 216
Query: 181 Y-GDIHPMRAIFMIPTKPPPSFREPDVW----TPEFIDFVSRCLVKNPEERATASEMLNH 235
           + GD         +      ++   D +    +    DF+ R LVK+P++R T  + L H
Sbjct: 217 FLGDTKQE----TLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 272
Query: 236 EFIQ 239
            +I+
Sbjct: 273 PWIK 276

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 98/247 (39%), Gaps = 45/247 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLK 59
           +++   P++V    ++     L++++EY   G +   M+L R+    ED     L +   
Sbjct: 75  LEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGEL--FMQLEREGIFMEDTACFYLAEISM 132
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            L +LH +  I+RD                                 LK  NI+LN +GH
Sbjct: 133 ALGHLHQKGIIYRD---------------------------------LKPENIMLNHQGH 159
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            KL DFG+  +        +   GT  +MAPE++   G++   D WSLG    +M  G P
Sbjct: 160 VKLTDFGLCKESIHDGTVTHXFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAP 219
Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLN 234
           P+   +  + I  I          P   T E  D + + L +N   R       A E+  
Sbjct: 220 PFTGENRKKTIDKILK---CKLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276
Query: 235 HEFIQRH 241
           H F  RH
Sbjct: 277 HPFF-RH 282

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 34/180 (18%)
Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           Q  + P++V  +  +   + L+ V+EY   G +   M+ R++ L E+       +    L
Sbjct: 76  QASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQ-RQRKLPEEHARFYSAEISLAL 134
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            YLH R  I+RD                                 LK  N+LL++EGH K
Sbjct: 135 NYLHERGIIYRD---------------------------------LKLDNVLLDSEGHIK 161
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           L D+G+  +        +   GTP ++APE+++   Y    D W+LG+   EM  G+ P+
Sbjct: 162 LTDYGMCKEGLRPGDTTSXFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPF 221

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 107/256 (41%), Gaps = 71/256 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS 78
           TD ++VM + G    +D+ +L K + L ED I  ++   LKGL Y+H    IHRD     
Sbjct: 103 TDFYLVMPFMG----TDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRD----- 153
Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR 138
                                       LK GN+ +N +   K+ DFG+A Q    M   
Sbjct: 154 ----------------------------LKPGNLAVNEDCELKILDFGLARQADSEMX-- 183
Query: 139 NTVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPY-GDIH--PMRAIFMIP 194
              + T ++ APEVI   + Y    D+WS+G    EM  GK  + G  H   ++ I  + 
Sbjct: 184 -GXVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVT 242
Query: 195 TKPPPSFRE--------------PDVWTPEF-----------IDFVSRCLVKNPEERATA 229
             PP  F +              P++   +F           ++ + + LV + E+R TA
Sbjct: 243 GTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTA 302
Query: 230 SEMLNHEFIQR-HDTD 244
            E L H + +  HDT+
Sbjct: 303 GEALAHPYFESLHDTE 318

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 44/252 (17%)
Query: 5   DSPYVVKYYGSYFKNTDL----WIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + P +V  Y +    T      +IVMEY    ++ DI+        +  I  ++ D  + 
Sbjct: 70  NHPAIVAVYATGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAI-EVIADACQA 128
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L + H    IHRD+K                                   NI+++     
Sbjct: 129 LNFSHQNGIIHRDVKPA---------------------------------NIMISATNAV 155
Query: 121 KLADFGVAGQLTDT---MAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           K+ DFG+A  + D+   + +   VIGT  +++PE  +    D  +D++SLG    E+  G
Sbjct: 156 KVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTG 215
Query: 178 KPPYGDIHPMRAIFM-IPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           +PP+    P+   +  +   P PPS R  +  + +    V + L KNPE R   +  +  
Sbjct: 216 EPPFTGDSPVSVAYQHVREDPIPPSARH-EGLSADLDAVVLKALAKNPENRYQTAAEMRA 274
Query: 236 EFIQRHDTDPSQ 247
           + ++ H+ +P +
Sbjct: 275 DLVRVHNGEPPE 286

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 48/231 (20%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P+++K Y      TD+ +V+EY G G + D + + KK ++EDE        +  +EY H 
Sbjct: 69  PHIIKLYDVITTPTDIVMVIEYAG-GELFDYI-VEKKRMTEDEGRRFFQQIICAIEYCHR 126
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
            + +HRD                                 LK  N+LL+   + K+ADFG
Sbjct: 127 HKIVHRD---------------------------------LKPENLLLDDNLNVKIADFG 153
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGDIH 185
           ++  +TD    + T  G+P + APEVI    Y     D+WS GI    M  G+ P+ D  
Sbjct: 154 LSNIMTDGNFLK-TSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDD-- 210
Query: 186 PMRAIFMIPT--KPPPS--FREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
                  IP   K   S  +  PD  +P     + R +V +P +R T  E+
Sbjct: 211 -----EFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEI 256

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 40/230 (17%)
Query: 23  WIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV 82
           +IVMEY    ++ DI+        +  I  ++ D  + L + H    IHRD+K       
Sbjct: 92  YIVMEYVDGVTLRDIVHTEGPMTPKRAI-EVIADACQALNFSHQNGIIHRDVKPA----- 145
Query: 83  YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRN 139
                                       NI+++     K+ DFG+A  + D+   + +  
Sbjct: 146 ----------------------------NIMISATNAVKVMDFGIARAIADSGNSVTQTA 177
Query: 140 TVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM-IPTKP- 197
            VIGT  +++PE  +    D  +D++SLG    E+  G+PP+    P+   +  +   P 
Sbjct: 178 AVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPI 237
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ 247
           PPS R  +  + +    V + L KNPE R   +  +  + ++ H+ +P +
Sbjct: 238 PPSARH-EGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPE 286

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 103/243 (42%), Gaps = 34/243 (13%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P ++     Y     +++V E    G + D + LR+K  SE E + +L    K +EYLH 
Sbjct: 76  PNIITLKDVYDDGKYVYVVTELMKGGELLDKI-LRQKFFSEREASAVLFTITKTVEYLHA 134
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +  +HRD+K  +                         L+  ++GN         ++ DFG
Sbjct: 135 QGVVHRDLKPSN------------------------ILYVDESGN-----PESIRICDFG 165
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYG---D 183
            A QL        T   T  ++APEV++  GYD   D+WSLG+    M  G  P+    D
Sbjct: 166 FAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPD 225
Query: 184 IHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD 242
             P   +  I + K   S    +  +    D VS+ L  +P +R TA+ +L H +I   D
Sbjct: 226 DTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVHWD 285
Query: 243 TDP 245
             P
Sbjct: 286 QLP 288

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 40/230 (17%)
Query: 23  WIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV 82
           +IVMEY    ++ DI+        +  I  ++ D  + L + H    IHRD+K       
Sbjct: 92  YIVMEYVDGVTLRDIVHTEGPMTPKRAI-EVIADACQALNFSHQNGIIHRDVKPA----- 145
Query: 83  YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRN 139
                                       NI+++     K+ DFG+A  + D+   + +  
Sbjct: 146 ----------------------------NIMISATNAVKVMDFGIARAIADSGNSVTQTA 177
Query: 140 TVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM-IPTKP- 197
            VIGT  +++PE  +    D  +D++SLG    E+  G+PP+    P+   +  +   P 
Sbjct: 178 AVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPI 237
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ 247
           PPS R  +  + +    V + L KNPE R   +  +  + ++ H+ +P +
Sbjct: 238 PPSARH-EGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPE 286

>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1 Length = 290

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 102/241 (42%), Gaps = 46/241 (19%)
Query: 7   PYVVKYYGSYFKNTD----LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLE 62
           P +V++Y S+         + +V E   +G++   ++ R K      + +     LKGL+
Sbjct: 85  PNIVRFYDSWESTVKGKKCIVLVTELXTSGTLKTYLK-RFKVXKIKVLRSWCRQILKGLQ 143
Query: 63  YLHLRRK--IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +LH R    IHRD+K                 C+ I                +    G  
Sbjct: 144 FLHTRTPPIIHRDLK-----------------CDNI---------------FITGPTGSV 171
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ D G+A     + AK   VIGTP + APE  +E  YD   D+++ G   LE A  + P
Sbjct: 172 KIGDLGLATLKRASFAK--AVIGTPEFXAPEXYEE-KYDESVDVYAFGXCXLEXATSEYP 228
Query: 181 YGDIHPMRAIFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           Y +      I+   T    P SF    V  PE  + +  C+ +N +ER +  ++LNH F 
Sbjct: 229 YSECQNAAQIYRRVTSGVKPASF--DKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFF 286
Query: 239 Q 239
           Q
Sbjct: 287 Q 287

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 44/247 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +V+ + S  +    ++V +    G + + +  R+   SE + +  +   L+ + + HL
Sbjct: 63  PNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVARE-YYSEADASHCIQQILESVNHCHL 121
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA---KLA 123
              +HRD                                 LK  N+LL ++      KLA
Sbjct: 122 NGIVHRD---------------------------------LKPENLLLASKSKGAAVKLA 148
Query: 124 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD 183
           DFG+A ++           GTP +++PEV+++  Y    DMW+ G+    +  G PP+ D
Sbjct: 149 DFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWD 208
Query: 184 IHPMRAIFMIPTK----PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
               R    I       P P   E D  TPE  D +++ L  NP +R TASE L H +I 
Sbjct: 209 EDQHRLYQQIKAGAYDFPSP---EWDTVTPEAKDLINKMLTINPAKRITASEALKHPWIC 265
Query: 240 RHDTDPS 246
           +  T  S
Sbjct: 266 QRSTVAS 272

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 44/247 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +V+ + S  +    ++V +    G + + +  R+   SE + +  +   L+ + + HL
Sbjct: 63  PNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVARE-YYSEADASHCIQQILESVNHCHL 121
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA---KLA 123
              +HRD                                 LK  N+LL ++      KLA
Sbjct: 122 NGIVHRD---------------------------------LKPENLLLASKSKGAAVKLA 148
Query: 124 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD 183
           DFG+A ++           GTP +++PEV+++  Y    DMW+ G+    +  G PP+ D
Sbjct: 149 DFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKDPYGKPVDMWACGVILYILLVGYPPFWD 208
Query: 184 IHPMRAIFMIPTK----PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
               R    I       P P   E D  TPE  D +++ L  NP +R TASE L H +I 
Sbjct: 209 EDQHRLYQQIKAGAYDFPSP---EWDTVTPEAKDLINKMLTINPAKRITASEALKHPWIC 265
Query: 240 RHDTDPS 246
           +  T  S
Sbjct: 266 QRSTVAS 272

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 42/176 (23%)
Query: 6   SPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEY 63
           S ++VKY G  +     +L +VMEY  +G + D ++  +  L    +        KG+EY
Sbjct: 67  SDFIVKYRGVSYGPGRPELRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEY 126
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
           L  RR +HRD                                 L A NIL+ +E H K+A
Sbjct: 127 LGSRRCVHRD---------------------------------LAARNILVESEAHVKIA 153
Query: 124 DFGVAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           DFG+A  L   + K   V+  P     FW APE + +  +   +D+WS G+   E+
Sbjct: 154 DFGLAKLL--PLDKDXXVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYEL 207

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 40/230 (17%)
Query: 23  WIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV 82
           +IVMEY    ++ DI+        +  I  ++ D  + L + H    IHRD+K       
Sbjct: 92  YIVMEYVDGVTLRDIVHTEGPMTPKRAI-EVIADACQALNFSHQNGIIHRDVKPA----- 145
Query: 83  YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRN 139
                                       NI+++     K+ DFG+A  + D+   + +  
Sbjct: 146 ----------------------------NIMISATNAVKVMDFGIARAIADSGNSVTQTA 177
Query: 140 TVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKP- 197
            VIGT  +++PE  +    D  +D++SLG    E+  G+PP+ GD     A   +   P 
Sbjct: 178 AVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQHVREDPI 237
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ 247
           PPS R  +  + +    V + L KNPE R   +  +  + ++ H+ +P +
Sbjct: 238 PPSARH-EGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHNGEPPE 286

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 44/247 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q D P ++K Y  +      ++V E    G + D +  RK+  SE + A I+   L G
Sbjct: 86  LKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKR-FSEVDAARIIRQVLSG 144
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---E 117
           + Y+H  + +HRD                                 LK  N+LL +   +
Sbjct: 145 ITYMHKNKIVHRD---------------------------------LKPENLLLESKSKD 171
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
            + ++ DFG++    +   K    IGT +++APEV+    YD   D+WS G+    +  G
Sbjct: 172 ANIRIIDFGLSTHF-EASKKMKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSG 229
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLN 234
            PP+   +    I     K   +F  P  W   +    D + + L   P  R +A + L+
Sbjct: 230 CPPFNGANEY-DILKKVEKGKYTFELPQ-WKKVSESAKDLIRKMLTYVPSMRISARDALD 287
Query: 235 HEFIQRH 241
           HE+IQ +
Sbjct: 288 HEWIQTY 294

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 90/242 (37%), Gaps = 47/242 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  + P V+K+ G  +K+  L  + EY   G++  I++         +  +   D   G
Sbjct: 61  MRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASG 120
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH    IHRD                                 L + N L+    + 
Sbjct: 121 MAYLHSMNIIHRD---------------------------------LNSHNCLVRENKNV 147
Query: 121 KLADFGVAGQLTDTMA--------------KRNTVIGTPFWMAPEVIQEIGYDCVADMWS 166
            +ADFG+A  + D                 KR TV+G P+WMAPE+I    YD   D++S
Sbjct: 148 VVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFS 207
Query: 167 LGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
            GI   E+        D  P    F +  +       P    P F     RC   +PE+R
Sbjct: 208 FGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKR 267
Query: 227 AT 228
            +
Sbjct: 268 PS 269

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 103/238 (43%), Gaps = 41/238 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +   P +VK+YG   K   ++IV EY   G + + +R   K L   ++  +  D  +G
Sbjct: 57  MMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEG 116
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + +L   + IHRD                                 L A N L++ +   
Sbjct: 117 MAFLESHQFIHRD---------------------------------LAARNCLVDRDLCV 143
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG+   + D   +  + +GT F   W APEV     Y   +D+W+ GI   E+ + 
Sbjct: 144 KVSDFGMTRYVLDD--QYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSL 201
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           GK PY D++    + +  ++    +R P + +      +  C  + PE+R T  ++L+
Sbjct: 202 GKMPY-DLYTNSEVVLKVSQGHRLYR-PHLASDTIYQIMYSCWHELPEKRPTFQQLLS 257

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 49/240 (20%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P+++K Y      TD ++VMEY   G + D +  +   + E E   +    L  ++Y H 
Sbjct: 71  PHIIKLYQVISTPTDFFMVMEYVSGGELFDYI-CKHGRVEEMEARRLFQQILSAVDYCHR 129
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              +HRD                                 LK  N+LL+   +AK+ADFG
Sbjct: 130 HMVVHRD---------------------------------LKPENVLLDAHMNAKIADFG 156
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGDIH 185
           ++  ++D    R++  G+P + APEVI    Y     D+WS G+    +  G  P+ D H
Sbjct: 157 LSNMMSDGEFLRDSC-GSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH 215
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFID-----FVSRCLVKNPEERATASEMLNHEFIQR 240
                  +PT      R    + PE+++      +   L  +P +RAT  ++  HE+ ++
Sbjct: 216 -------VPTL-FKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQ 267

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 38/234 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WI+ME C  G +   +++RK +L    +          
Sbjct: 65  MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTA 123
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRDI                                  A N+L+++    
Sbjct: 124 LAYLESKRFVHRDI---------------------------------AARNVLVSSNDCV 150
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D+   + +    P  WMAPE I    +   +D+W  G+   E +  G 
Sbjct: 151 KLGDFGLSRYMEDSTXXKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 210
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+  +     I  I          P    P     +++C   +P  R   +E+
Sbjct: 211 KPFQGVKNNDVIGRIENG--ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 262

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 49/240 (20%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P+++K Y      TD ++VMEY   G + D +  +   + E E   +    L  ++Y H 
Sbjct: 71  PHIIKLYQVISTPTDFFMVMEYVSGGELFDYI-CKHGRVEEMEARRLFQQILSAVDYCHR 129
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              +HRD                                 LK  N+LL+   +AK+ADFG
Sbjct: 130 HMVVHRD---------------------------------LKPENVLLDAHMNAKIADFG 156
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGDIH 185
           ++  ++D    R T  G+P + APEVI    Y     D+WS G+    +  G  P+ D H
Sbjct: 157 LSNMMSDGEFLR-TSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH 215
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFID-----FVSRCLVKNPEERATASEMLNHEFIQR 240
                  +PT      R    + PE+++      +   L  +P +RAT  ++  HE+ ++
Sbjct: 216 -------VPTL-FKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQ 267

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 106/247 (42%), Gaps = 44/247 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q D P ++K Y  +      ++V E    G + D +  RK+  SE + A I+   L G
Sbjct: 80  LKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKR-FSEVDAARIIRQVLSG 138
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---E 117
           + Y+H  + +HRD                                 LK  N+LL +   +
Sbjct: 139 ITYMHKNKIVHRD---------------------------------LKPENLLLESKSKD 165
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
            + ++ DFG++    +   K    IGT +++APEV+    YD   D+WS G+    +  G
Sbjct: 166 ANIRIIDFGLSTHF-EASKKMKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSG 223
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLN 234
            PP+   +    +  +  K   +F  P  W   +    D + + L   P  R +A + L+
Sbjct: 224 CPPFNGANEYDILKKVE-KGKYTFELPQ-WKKVSESAKDLIRKMLTYVPSMRISARDALD 281
Query: 235 HEFIQRH 241
           HE+IQ +
Sbjct: 282 HEWIQTY 288

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 35/240 (14%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +   P +V     Y     L+++M+    G + D + + K   +E + + ++   L  
Sbjct: 70  LHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRI-VEKGFYTERDASRLIFQVLDA 128
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YLH    +HRD+K                      N +Y +          L+ +   
Sbjct: 129 VKYLHDLGIVHRDLKP--------------------ENLLYYS----------LDEDSKI 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
            ++DFG++ ++ D  +  +T  GTP ++APEV+ +  Y    D WS+G+ A  +  G PP
Sbjct: 159 MISDFGLS-KMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 217
Query: 181 YGDIHPMRAIFMIPTKPPPSFREP--DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           + D +  + +F    K    F  P  D  +    DF+   + K+PE+R T  + L H +I
Sbjct: 218 FYDENDAK-LFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWI 276

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 44/245 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q D P ++K Y  +      ++V E    G + D +  RK+  SE + A I+   L G
Sbjct: 104 LKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKR-FSEVDAARIIRQVLSG 162
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---E 117
           + Y+H  + +HRD                                 LK  N+LL +   +
Sbjct: 163 ITYMHKNKIVHRD---------------------------------LKPENLLLESKSKD 189
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
            + ++ DFG++    +   K    IGT +++APEV+    YD   D+WS G+    +  G
Sbjct: 190 ANIRIIDFGLSTHF-EASKKMKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSG 247
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLN 234
            PP+   +    +  +  K   +F  P  W   +    D + + L   P  R +A + L+
Sbjct: 248 CPPFNGANEYDILKKVE-KGKYTFELPQ-WKKVSESAKDLIRKMLTYVPSMRISARDALD 305
Query: 235 HEFIQ 239
           HE+IQ
Sbjct: 306 HEWIQ 310

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 105/245 (42%), Gaps = 44/245 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q D P ++K Y  +      ++V E    G + D +  RK+  SE + A I+   L G
Sbjct: 103 LKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKR-FSEVDAARIIRQVLSG 161
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---E 117
           + Y+H  + +HRD                                 LK  N+LL +   +
Sbjct: 162 ITYMHKNKIVHRD---------------------------------LKPENLLLESKSKD 188
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
            + ++ DFG++    +   K    IGT +++APEV+    YD   D+WS G+    +  G
Sbjct: 189 ANIRIIDFGLSTHF-EASKKMKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSG 246
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLN 234
            PP+   +    +  +  K   +F  P  W   +    D + + L   P  R +A + L+
Sbjct: 247 CPPFNGANEYDILKKVE-KGKYTFELPQ-WKKVSESAKDLIRKMLTYVPSMRISARDALD 304
Query: 235 HEFIQ 239
           HE+IQ
Sbjct: 305 HEWIQ 309

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 34/181 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++    P++V  + S+     L+ V++Y   G +   ++ R++   E        +    
Sbjct: 93  LKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQ-RERCFLEPRARFYAAEIASA 151
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH    ++RD                                 LK  NILL+++GH 
Sbjct: 152 LGYLHSLNIVYRD---------------------------------LKPENILLDSQGHI 178
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
            L DFG+  +  +  +  +T  GTP ++APEV+ +  YD   D W LG    EM  G PP
Sbjct: 179 VLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPP 238
Query: 181 Y 181
           +
Sbjct: 239 F 239

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 35/240 (14%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +   P +V     Y     L+++M+    G + D + + K   +E + + ++   L  
Sbjct: 70  LHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRI-VEKGFYTERDASRLIFQVLDA 128
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YLH    +HRD+K                      N +Y +          L+ +   
Sbjct: 129 VKYLHDLGIVHRDLKP--------------------ENLLYYS----------LDEDSKI 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
            ++DFG++ ++ D  +  +T  GTP ++APEV+ +  Y    D WS+G+ A  +  G PP
Sbjct: 159 MISDFGLS-KMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 217
Query: 181 YGDIHPMRAIFMIPTKPPPSFREP--DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           + D +  + +F    K    F  P  D  +    DF+   + K+PE+R T  + L H +I
Sbjct: 218 FYDENDAK-LFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWI 276

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 35/240 (14%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +   P +V     Y     L+++M+    G + D + + K   +E + + ++   L  
Sbjct: 70  LHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRI-VEKGFYTERDASRLIFQVLDA 128
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YLH    +HRD+K                      N +Y +          L+ +   
Sbjct: 129 VKYLHDLGIVHRDLKP--------------------ENLLYYS----------LDEDSKI 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
            ++DFG++ ++ D  +  +T  GTP ++APEV+ +  Y    D WS+G+ A  +  G PP
Sbjct: 159 MISDFGLS-KMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 217
Query: 181 YGDIHPMRAIFMIPTKPPPSFREP--DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           + D +  + +F    K    F  P  D  +    DF+   + K+PE+R T  + L H +I
Sbjct: 218 FYDENDAK-LFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWI 276

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 101/246 (41%), Gaps = 58/246 (23%)
Query: 18  KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG 77
           + T L +V E+      + + ++ +  +  + I  ++   L+GL++LH  R +HRD    
Sbjct: 90  RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRD---- 145
Query: 78  SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK 137
                                        LK  NIL+ + G  KLADFG+A   +  MA 
Sbjct: 146 -----------------------------LKPQNILVTSSGQIKLADFGLARIYSFQMAL 176
Query: 138 RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY---GDIHPMRAIFMIP 194
            + V+ T ++ APEV+ +  Y    D+WS+G    EM   KP +    D+  +  I  + 
Sbjct: 177 TSVVV-TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVI 235
Query: 195 TKPPPSFREPDVWTP-------------EFI--------DFVSRCLVKNPEERATASEML 233
             P       DV  P             +F+        D + +CL  NP +R +A   L
Sbjct: 236 GLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSAL 295
Query: 234 NHEFIQ 239
           +H + Q
Sbjct: 296 SHPYFQ 301

>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6 Length = 317

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 103/252 (40%), Gaps = 63/252 (25%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +V++       T L IVMEY   G + + +       SEDE        + G+ Y H 
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFERI-CNAGRFSEDEARFFFQQLISGVSYAHA 133
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG--HAKLAD 124
            +  HRD                                 LK  N LL+       K+AD
Sbjct: 134 MQVAHRD---------------------------------LKLENTLLDGSPAPRLKIAD 160
Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGD 183
           FG + + +   ++  + +GTP ++APEV+ +  YD  VAD+WS G+T   M  G  P+ D
Sbjct: 161 FGYS-KASVLHSQPKSAVGTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFED 219
Query: 184 IHPMRAIFMIPTKPPPSFRE------------PDV--WTPEFIDFVSRCLVKNPEERATA 229
                       + P +FR+            PD    +PE    +SR  V +P +R + 
Sbjct: 220 -----------PEEPKNFRKTIHRILNVQYAIPDYVHISPECRHLISRIFVADPAKRISI 268
Query: 230 SEMLNHEFIQRH 241
            E+ NHE+  ++
Sbjct: 269 PEIRNHEWFLKN 280

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 100/236 (42%), Gaps = 43/236 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  + P +VK +        L++VMEY   G V D + +    + E E        +  
Sbjct: 67  MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYL-VAHGRMKEKEARAKFRQIVSA 125
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++Y H +  +HRD                                 LKA N+LL+ + + 
Sbjct: 126 VQYCHQKFIVHRD---------------------------------LKAENLLLDADMNI 152
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKP 179
           K+ADFG + + T    K +T  G+P + APE+ Q   YD    D+WSLG+    +  G  
Sbjct: 153 KIADFGFSNEFT-FGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSL 211
Query: 180 PYG--DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           P+   ++  +R   +        +R P   + +  + + + L+ NP +R T  +++
Sbjct: 212 PFDGQNLKELRERVL-----RGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIM 262

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 35/240 (14%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +   P +V     Y     L+++M+    G + D + + K   +E + + ++   L  
Sbjct: 70  LHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRI-VEKGFYTERDASRLIFQVLDA 128
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YLH    +HRD+K                      N +Y +          L+ +   
Sbjct: 129 VKYLHDLGIVHRDLKP--------------------ENLLYYS----------LDEDSKI 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
            ++DFG++ ++ D  +  +T  GTP ++APEV+ +  Y    D WS+G+ A  +  G PP
Sbjct: 159 MISDFGLS-KMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 217
Query: 181 YGDIHPMRAIFMIPTKPPPSFREP--DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           + D +  + +F    K    F  P  D  +    DF+   + K+PE+R T  + L H +I
Sbjct: 218 FYDENDAK-LFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWI 276

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 100/236 (42%), Gaps = 43/236 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  + P +VK +        L++VMEY   G V D +    + + E E        +  
Sbjct: 67  MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGR-MKEKEARAKFRQIVSA 125
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++Y H +  +HRD                                 LKA N+LL+ + + 
Sbjct: 126 VQYCHQKFIVHRD---------------------------------LKAENLLLDADMNI 152
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKP 179
           K+ADFG + + T    K +T  G+P + APE+ Q   YD    D+WSLG+    +  G  
Sbjct: 153 KIADFGFSNEFT-FGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSL 211
Query: 180 PYG--DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           P+   ++  +R   +        +R P   + +  + + + L+ NP +R T  +++
Sbjct: 212 PFDGQNLKELRERVL-----RGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIM 262

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 100/236 (42%), Gaps = 43/236 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  + P +VK +        L++VMEY   G V D + +    + E E        +  
Sbjct: 67  MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYL-VAHGRMKEKEARAKFRQIVSA 125
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++Y H +  +HRD                                 LKA N+LL+ + + 
Sbjct: 126 VQYCHQKFIVHRD---------------------------------LKAENLLLDADMNI 152
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKP 179
           K+ADFG + + T    K +T  G+P + APE+ Q   YD    D+WSLG+    +  G  
Sbjct: 153 KIADFGFSNEFT-FGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSL 211
Query: 180 PYG--DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           P+   ++  +R   +        +R P   + +  + + + L+ NP +R T  +++
Sbjct: 212 PFDGQNLKELRERVL-----RGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIM 262

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 101/246 (41%), Gaps = 58/246 (23%)
Query: 18  KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG 77
           + T L +V E+      + + ++ +  +  + I  ++   L+GL++LH  R +HRD    
Sbjct: 90  RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRD---- 145
Query: 78  SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK 137
                                        LK  NIL+ + G  KLADFG+A   +  MA 
Sbjct: 146 -----------------------------LKPQNILVTSSGQIKLADFGLARIYSFQMAL 176
Query: 138 RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY---GDIHPMRAIFMIP 194
            + V+ T ++ APEV+ +  Y    D+WS+G    EM   KP +    D+  +  I  + 
Sbjct: 177 TSVVV-TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVI 235
Query: 195 TKPPPSFREPDVWTP-------------EFI--------DFVSRCLVKNPEERATASEML 233
             P       DV  P             +F+        D + +CL  NP +R +A   L
Sbjct: 236 GLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSAL 295
Query: 234 NHEFIQ 239
           +H + Q
Sbjct: 296 SHPYFQ 301

>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2: Se-Met Derivative Length = 342

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 102/243 (41%), Gaps = 34/243 (13%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P ++     Y     +++V E    G + D + LR+K  SE E + +L    K +EYLH 
Sbjct: 76  PNIITLKDVYDDGKYVYVVTELXKGGELLDKI-LRQKFFSEREASAVLFTITKTVEYLHA 134
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +  +HRD+K  +                         L+  ++GN         ++ DFG
Sbjct: 135 QGVVHRDLKPSN------------------------ILYVDESGN-----PESIRICDFG 165
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYG---D 183
            A QL        T   T  ++APEV++  GYD   D+WSLG+       G  P+    D
Sbjct: 166 FAKQLRAENGLLXTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTXLTGYTPFANGPD 225
Query: 184 IHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD 242
             P   +  I + K   S    +  +    D VS+ L  +P +R TA+ +L H +I   D
Sbjct: 226 DTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKXLHVDPHQRLTAALVLRHPWIVHWD 285
Query: 243 TDP 245
             P
Sbjct: 286 QLP 288

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 72/174 (41%), Gaps = 38/174 (21%)
Query: 6   SPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEY 63
           S ++VKY G  +      L +VMEY  +G + D ++  +  L    +        KG+EY
Sbjct: 70  SDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEY 129
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
           L  RR +HRD                                 L A NIL+ +E H K+A
Sbjct: 130 LGSRRCVHRD---------------------------------LAARNILVESEAHVKIA 156
Query: 124 DFGVAGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           DFG+A  L    D    R       FW APE + +  +   +D+WS G+   E+
Sbjct: 157 DFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYEL 210

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 72/174 (41%), Gaps = 38/174 (21%)
Query: 6   SPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEY 63
           S ++VKY G  +      L +VMEY  +G + D ++  +  L    +        KG+EY
Sbjct: 71  SDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEY 130
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
           L  RR +HRD                                 L A NIL+ +E H K+A
Sbjct: 131 LGSRRCVHRD---------------------------------LAARNILVESEAHVKIA 157
Query: 124 DFGVAGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           DFG+A  L    D    R       FW APE + +  +   +D+WS G+   E+
Sbjct: 158 DFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYEL 211

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 38/234 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WI+ME C  G +   +++RK +L    +          
Sbjct: 93  MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTA 151
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRDI                                  A N+L+++    
Sbjct: 152 LAYLESKRFVHRDI---------------------------------AARNVLVSSNDCV 178
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D+   + +    P  WMAPE I    +   +D+W  G+   E +  G 
Sbjct: 179 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 238
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+  +     I  I          P    P     +++C   +P  R   +E+
Sbjct: 239 KPFQGVKNNDVIGRIENG--ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 290

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 72/174 (41%), Gaps = 38/174 (21%)
Query: 6   SPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEY 63
           S ++VKY G  +      L +VMEY  +G + D ++  +  L    +        KG+EY
Sbjct: 83  SDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEY 142
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
           L  RR +HRD                                 L A NIL+ +E H K+A
Sbjct: 143 LGSRRCVHRD---------------------------------LAARNILVESEAHVKIA 169
Query: 124 DFGVAGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           DFG+A  L    D    R       FW APE + +  +   +D+WS G+   E+
Sbjct: 170 DFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYEL 223

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 38/234 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WI+ME C  G +   +++RK +L    +          
Sbjct: 65  MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTA 123
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRDI                                  A N+L+++    
Sbjct: 124 LAYLESKRFVHRDI---------------------------------AARNVLVSSNDCV 150
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D+   + +    P  WMAPE I    +   +D+W  G+   E +  G 
Sbjct: 151 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 210
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+  +     I  I          P    P     +++C   +P  R   +E+
Sbjct: 211 KPFQGVKNNDVIGRIENG--ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 262

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 101/246 (41%), Gaps = 58/246 (23%)
Query: 18  KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG 77
           + T L +V E+      + + ++ +  +  + I  ++   L+GL++LH  R +HRD    
Sbjct: 90  RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRD---- 145
Query: 78  SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK 137
                                        LK  NIL+ + G  KLADFG+A   +  MA 
Sbjct: 146 -----------------------------LKPQNILVTSSGQIKLADFGLARIYSFQMAL 176
Query: 138 RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY---GDIHPMRAIFMIP 194
            + V+ T ++ APEV+ +  Y    D+WS+G    EM   KP +    D+  +  I  + 
Sbjct: 177 TSVVV-TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVI 235
Query: 195 TKPPPSFREPDVWTP-------------EFI--------DFVSRCLVKNPEERATASEML 233
             P       DV  P             +F+        D + +CL  NP +R +A   L
Sbjct: 236 GLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSAL 295
Query: 234 NHEFIQ 239
           +H + Q
Sbjct: 296 SHPYFQ 301

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 38/234 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WI+ME C  G +   +++RK +L    +          
Sbjct: 65  MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTA 123
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRDI                                  A N+L+++    
Sbjct: 124 LAYLESKRFVHRDI---------------------------------AARNVLVSSNDCV 150
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D+   + +    P  WMAPE I    +   +D+W  G+   E +  G 
Sbjct: 151 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 210
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+  +     I  I          P    P     +++C   +P  R   +E+
Sbjct: 211 KPFQGVKNNDVIGRIENG--ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 262

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 38/234 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WI+ME C  G +   +++RK +L    +          
Sbjct: 70  MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTA 128
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRDI                                  A N+L+++    
Sbjct: 129 LAYLESKRFVHRDI---------------------------------AARNVLVSSNDCV 155
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D+   + +    P  WMAPE I    +   +D+W  G+   E +  G 
Sbjct: 156 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 215
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+  +     I  I          P    P     +++C   +P  R   +E+
Sbjct: 216 KPFQGVKNNDVIGRIENG--ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 267

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 44/245 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q D P + K Y  +      ++V E    G + D +  RK+  SE + A I+   L G
Sbjct: 80  LKQLDHPNIXKLYEFFEDKGYFYLVGEVYTGGELFDEIISRKR-FSEVDAARIIRQVLSG 138
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---E 117
           + Y H  + +HRD                                 LK  N+LL +   +
Sbjct: 139 ITYXHKNKIVHRD---------------------------------LKPENLLLESKSKD 165
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
            + ++ DFG++    +   K    IGT +++APEV+    YD   D+WS G+    +  G
Sbjct: 166 ANIRIIDFGLSTHF-EASKKXKDKIGTAYYIAPEVLHGT-YDEKCDVWSTGVILYILLSG 223
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLN 234
            PP+   +    +  +  K   +F  P  W   +    D + + L   P  R +A + L+
Sbjct: 224 CPPFNGANEYDILKKVE-KGKYTFELPQ-WKKVSESAKDLIRKXLTYVPSXRISARDALD 281
Query: 235 HEFIQ 239
           HE+IQ
Sbjct: 282 HEWIQ 286

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 38/234 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WI+ME C  G +   +++RK +L    +          
Sbjct: 68  MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTA 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRDI                                  A N+L+++    
Sbjct: 127 LAYLESKRFVHRDI---------------------------------AARNVLVSSNDCV 153
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D+   + +    P  WMAPE I    +   +D+W  G+   E +  G 
Sbjct: 154 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 213
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+  +     I  I          P    P     +++C   +P  R   +E+
Sbjct: 214 KPFQGVKNNDVIGRIENG--ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 265

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 38/234 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WI+ME C  G +   +++RK +L    +          
Sbjct: 62  MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTA 120
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRDI                                  A N+L+++    
Sbjct: 121 LAYLESKRFVHRDI---------------------------------AARNVLVSSNDCV 147
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D+   + +    P  WMAPE I    +   +D+W  G+   E +  G 
Sbjct: 148 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 207
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+  +     I  I          P    P     +++C   +P  R   +E+
Sbjct: 208 KPFQGVKNNDVIGRIENG--ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 259

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 38/234 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WI+ME C  G +   +++RK +L    +          
Sbjct: 67  MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTA 125
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRDI                                  A N+L+++    
Sbjct: 126 LAYLESKRFVHRDI---------------------------------AARNVLVSSNDCV 152
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D+   + +    P  WMAPE I    +   +D+W  G+   E +  G 
Sbjct: 153 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 212
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+  +     I  I          P    P     +++C   +P  R   +E+
Sbjct: 213 KPFQGVKNNDVIGRIENG--ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 264

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 107/245 (43%), Gaps = 44/245 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++  D P ++K Y  +    + ++VME    G + D +  R K  +E + A I+   L G
Sbjct: 90  LKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRMK-FNEVDAAVIIKQVLSG 148
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---E 117
           + YLH    +HRD                                 LK  N+LL +   +
Sbjct: 149 VTYLHKHNIVHRD---------------------------------LKPENLLLESKEKD 175
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              K+ DFG++  + +   K    +GT +++APEV+++  YD   D+WS+G+    +  G
Sbjct: 176 ALIKIVDFGLSA-VFENQKKMKERLGTAYYIAPEVLRK-KYDEKCDVWSIGVILFILLAG 233
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLN 234
            PP+G     + I     K   +F  P+ W   +    D + + L  + + R +A + L 
Sbjct: 234 YPPFGG-QTDQEILRKVEKGKYTFDSPE-WKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291
Query: 235 HEFIQ 239
           H +I+
Sbjct: 292 HPWIK 296

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 10/147 (6%)
Query: 107 LKAGNILLNTE---GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD 163
           LK  N+LL ++      KLADFG+A ++           GTP +++PEV+++  Y    D
Sbjct: 147 LKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVD 206
Query: 164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK----PPPSFREPDVWTPEFIDFVSRCL 219
           +W+ G+    +  G PP+ D    R    I       P P   E D  TPE  D +++ L
Sbjct: 207 LWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSP---EWDTVTPEAKDLINKML 263
Query: 220 VKNPEERATASEMLNHEFIQRHDTDPS 246
             NP +R TA+E L H +I    T  S
Sbjct: 264 TINPSKRITAAEALKHPWISHRSTVAS 290

>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains Length = 656

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 92/234 (39%), Gaps = 38/234 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WI+ME C  G +   +++RK +L    +          
Sbjct: 445 MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTA 503
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRDI                                  A N+L+++    
Sbjct: 504 LAYLESKRFVHRDI---------------------------------AARNVLVSSNDCV 530
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D+   + +    P  WMAPE I    +   +D+W  G+   E +  G 
Sbjct: 531 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 590
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+  +     I  I          P    P     +++C   +P  R   +E+
Sbjct: 591 KPFQGVKNNDVIGRIENG--ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 642

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 48/252 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ D P ++K +     ++  +IV E    G + D + +++K  SE + A I+     G
Sbjct: 75  LKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEI-IKRKRFSEHDAARIIKQVFSG 133
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH- 119
           + Y+H    +HRD                                 LK  NILL ++   
Sbjct: 134 ITYMHKHNIVHRD---------------------------------LKPENILLESKEKD 160
Query: 120 --AKLADFGVAG--QLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
              K+ DFG++   Q    M  R   IGT +++APEV++   YD   D+WS G+    + 
Sbjct: 161 CDIKIIDFGLSTCFQQNTKMKDR---IGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILL 216
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEM 232
            G PP+   +    +  + T    +F  P  W   + +  D + + L  +P  R TA++ 
Sbjct: 217 SGTPPFYGKNEYDILKRVET-GKYAFDLPQ-WRTISDDAKDLIRKMLTFHPSLRITATQC 274
Query: 233 LNHEFIQRHDTD 244
           L H +IQ++ ++
Sbjct: 275 LEHPWIQKYSSE 286

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 48/252 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ D P ++K +     ++  +IV E    G + D + +++K  SE + A I+     G
Sbjct: 75  LKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEI-IKRKRFSEHDAARIIKQVFSG 133
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH- 119
           + Y+H    +HRD                                 LK  NILL ++   
Sbjct: 134 ITYMHKHNIVHRD---------------------------------LKPENILLESKEKD 160
Query: 120 --AKLADFGVAG--QLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
              K+ DFG++   Q    M  R   IGT +++APEV++   YD   D+WS G+    + 
Sbjct: 161 CDIKIIDFGLSTCFQQNTKMKDR---IGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILL 216
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEM 232
            G PP+   +    +  + T    +F  P  W   + +  D + + L  +P  R TA++ 
Sbjct: 217 SGTPPFYGKNEYDILKRVET-GKYAFDLPQ-WRTISDDAKDLIRKMLTFHPSLRITATQC 274
Query: 233 LNHEFIQRHDTD 244
           L H +IQ++ ++
Sbjct: 275 LEHPWIQKYSSE 286

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 41/216 (18%)
Query: 23  WIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV 82
           +IVMEY    ++ DI+        +  I  ++ D  + L + H    IHRD+K       
Sbjct: 109 YIVMEYVDGVTLRDIVHTEGPMTPKRAI-EVIADACQALNFSHQNGIIHRDVKPA----- 162
Query: 83  YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRN 139
                                       NI+++     K+ DFG+A  + D+   + +  
Sbjct: 163 ----------------------------NIMISATNAVKVMDFGIARAIADSGNSVTQTA 194
Query: 140 TVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM-IPTKP- 197
            VIGT  +++PE  +    D  +D++SLG    E+  G+PP+    P+   +  +   P 
Sbjct: 195 AVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPI 254
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEER-ATASEM 232
           PPS R  +  + +    V + L KNPE R  TA+EM
Sbjct: 255 PPSARH-EGLSADLDAVVLKALAKNPENRYQTAAEM 289

>pdb|3SOA|A Chain A, Full-Length Human Camkii Length = 444

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 10/147 (6%)
Query: 107 LKAGNILLNTE---GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD 163
           LK  N+LL ++      KLADFG+A ++           GTP +++PEV+++  Y    D
Sbjct: 136 LKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVD 195
Query: 164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK----PPPSFREPDVWTPEFIDFVSRCL 219
           +W+ G+    +  G PP+ D    R    I       P P   E D  TPE  D +++ L
Sbjct: 196 LWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSP---EWDTVTPEAKDLINKML 252
Query: 220 VKNPEERATASEMLNHEFIQRHDTDPS 246
             NP +R TA+E L H +I    T  S
Sbjct: 253 TINPSKRITAAEALKHPWISHRSTVAS 279

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 34/243 (13%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P ++     Y     +++V E    G + D + LR+K  SE E + +L    K +EYLH 
Sbjct: 81  PNIITLKDVYDDGKHVYLVTELMRGGELLDKI-LRQKFFSEREASFVLHTIGKTVEYLHS 139
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +  +HRD+K  +                         L+  ++GN         ++ DFG
Sbjct: 140 QGVVHRDLKPSN------------------------ILYVDESGNPEC-----LRICDFG 170
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD--- 183
            A QL        T   T  ++APEV++  GYD   D+WSLGI    M  G  P+ +   
Sbjct: 171 FAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPS 230
Query: 184 IHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD 242
             P   +  I + K   S    +  +    D VS+ L  +P +R TA ++L H ++ + D
Sbjct: 231 DTPEEILTRIGSGKFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPWVTQKD 290
Query: 243 TDP 245
             P
Sbjct: 291 KLP 293

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 100/236 (42%), Gaps = 43/236 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  + P +VK +        L++VMEY   G V D + +    + E E        +  
Sbjct: 60  MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYL-VAHGWMKEKEARAKFRQIVSA 118
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++Y H +  +HRD                                 LKA N+LL+ + + 
Sbjct: 119 VQYCHQKFIVHRD---------------------------------LKAENLLLDADMNI 145
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKP 179
           K+ADFG + + T    K +T  G+P + APE+ Q   YD    D+WSLG+    +  G  
Sbjct: 146 KIADFGFSNEFT-FGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSL 204
Query: 180 PYG--DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           P+   ++  +R   +        +R P   + +  + + + L+ NP +R T  +++
Sbjct: 205 PFDGQNLKELRERVL-----RGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIM 255

>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands Length = 334

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 106/257 (41%), Gaps = 51/257 (19%)
Query: 3   QCDSPYVVK----YYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDT 57
           QC  P++V+    Y   Y     L IVME    G + S I     +  +E E + I+   
Sbjct: 83  QC--PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI 140
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
            + ++YLH     HRD+K        + L Y S + N I                     
Sbjct: 141 GEAIQYLHSINIAHRDVKP-------ENLLYTSKRPNAIL-------------------- 173
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              KL DFG A + T +     T   TP+++APEV+    YD   DMWSLG+    +  G
Sbjct: 174 ---KLTDFGFAKE-TTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 229
Query: 178 KPPYGDIHPMRAIFMIPTK--------PPPSFREPDVWTPEFIDFVSRCLVKN-PEERAT 228
            PP+   H +     + T+        P P + E      E +  + R L+K  P +R T
Sbjct: 230 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSE----VSEEVKMLIRNLLKTEPTQRMT 285
Query: 229 ASEMLNHEFIQRHDTDP 245
            +E +NH +I +    P
Sbjct: 286 ITEFMNHPWIMQSTKVP 302

>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal Form-1, Soaking) Length = 326

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 51/258 (19%)
Query: 3   QCDSPYVVK----YYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDT 57
           QC  P++V+    Y   Y     L IVME    G + S I     +  +E E + I+   
Sbjct: 75  QC--PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI 132
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
            + ++YLH     HRD+K        + L Y S + N I                     
Sbjct: 133 GEAIQYLHSINIAHRDVKP-------ENLLYTSKRPNAI--------------------- 164
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              KL DFG A + T +     T   TP+++APEV+    YD   DMWSLG+    +  G
Sbjct: 165 --LKLTDFGFAKE-TTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 221
Query: 178 KPPYGDIHPMRAIFMIPTK--------PPPSFREPDVWTPEFIDFVSRCLVKN-PEERAT 228
            PP+   H +     + T+        P P + E      E +  + R L+K  P +R T
Sbjct: 222 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSE----VSEEVKMLIRNLLKTEPTQRMT 277
Query: 229 ASEMLNHEFIQRHDTDPS 246
            +E +NH +I +    P 
Sbjct: 278 ITEFMNHPWIMQSTKVPQ 295

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 34/243 (13%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P ++     Y     +++V E    G + D + LR+K  SE E + +L    K +EYLH 
Sbjct: 81  PNIITLKDVYDDGKHVYLVTELMRGGELLDKI-LRQKFFSEREASFVLHTIGKTVEYLHS 139
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +  +HRD+K  +                         L+  ++GN         ++ DFG
Sbjct: 140 QGVVHRDLKPSN------------------------ILYVDESGN-----PECLRICDFG 170
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD--- 183
            A QL        T   T  ++APEV++  GYD   D+WSLGI    M  G  P+ +   
Sbjct: 171 FAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYTPFANGPS 230
Query: 184 IHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD 242
             P   +  I + K   S    +  +    D VS+ L  +P +R TA ++L H ++ + D
Sbjct: 231 DTPEEILTRIGSGKFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPWVTQKD 290
Query: 243 TDP 245
             P
Sbjct: 291 KLP 293

>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76 Length = 324

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 51/258 (19%)
Query: 3   QCDSPYVVK----YYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDT 57
           QC  P++V+    Y   Y     L IVME    G + S I     +  +E E + I+   
Sbjct: 73  QC--PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI 130
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
            + ++YLH     HRD+K        + L Y S + N I                     
Sbjct: 131 GEAIQYLHSINIAHRDVKP-------ENLLYTSKRPNAI--------------------- 162
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              KL DFG A + T +     T   TP+++APEV+    YD   DMWSLG+    +  G
Sbjct: 163 --LKLTDFGFAKE-TTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 219
Query: 178 KPPYGDIHPMRAIFMIPTK--------PPPSFREPDVWTPEFIDFVSRCLVKN-PEERAT 228
            PP+   H +     + T+        P P + E      E +  + R L+K  P +R T
Sbjct: 220 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSE----VSEEVKMLIRNLLKTEPTQRMT 275
Query: 229 ASEMLNHEFIQRHDTDPS 246
            +E +NH +I +    P 
Sbjct: 276 ITEFMNHPWIMQSTKVPQ 293

>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 Length = 400

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 51/258 (19%)
Query: 3   QCDSPYVVK----YYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDT 57
           QC  P++V+    Y   Y     L IVME    G + S I     +  +E E + I+   
Sbjct: 113 QC--PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI 170
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
            + ++YLH     HRD+K        + L Y S + N I                     
Sbjct: 171 GEAIQYLHSINIAHRDVKP-------ENLLYTSKRPNAI--------------------- 202
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              KL DFG A + T +     T   TP+++APEV+    YD   DMWSLG+    +  G
Sbjct: 203 --LKLTDFGFAKE-TTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 259
Query: 178 KPPYGDIHPMRAIFMIPTK--------PPPSFREPDVWTPEFIDFVSRCLVKN-PEERAT 228
            PP+   H +     + T+        P P + E      E +  + R L+K  P +R T
Sbjct: 260 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSE----VSEEVKMLIRNLLKTEPTQRMT 315
Query: 229 ASEMLNHEFIQRHDTDPS 246
            +E +NH +I +    P 
Sbjct: 316 ITEFMNHPWIMQSTKVPQ 333

>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap Kinase-2 Length = 325

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 51/258 (19%)
Query: 3   QCDSPYVVK----YYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDT 57
           QC  P++V+    Y   Y     L IVME    G + S I     +  +E E + I+   
Sbjct: 74  QC--PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI 131
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
            + ++YLH     HRD+K        + L Y S + N I                     
Sbjct: 132 GEAIQYLHSINIAHRDVKP-------ENLLYTSKRPNAI--------------------- 163
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              KL DFG A + T +     T   TP+++APEV+    YD   DMWSLG+    +  G
Sbjct: 164 --LKLTDFGFAKE-TTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 220
Query: 178 KPPYGDIHPMRAIFMIPTK--------PPPSFREPDVWTPEFIDFVSRCLVKN-PEERAT 228
            PP+   H +     + T+        P P + E      E +  + R L+K  P +R T
Sbjct: 221 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSE----VSEEVKMLIRNLLKTEPTQRMT 276
Query: 229 ASEMLNHEFIQRHDTDPS 246
            +E +NH +I +    P 
Sbjct: 277 ITEFMNHPWIMQSTKVPQ 294

>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer Length = 406

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 106/257 (41%), Gaps = 51/257 (19%)
Query: 3   QCDSPYVVK----YYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDT 57
           QC  P++V+    Y   Y     L IVME    G + S I     +  +E E + I+   
Sbjct: 119 QC--PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI 176
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
            + ++YLH     HRD+K        + L Y S + N I                     
Sbjct: 177 GEAIQYLHSINIAHRDVKP-------ENLLYTSKRPNAI--------------------- 208
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              KL DFG A + T +     T   TP+++APEV+    YD   DMWSLG+    +  G
Sbjct: 209 --LKLTDFGFAKE-TTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 265
Query: 178 KPPYGDIHPMRAIFMIPTK--------PPPSFREPDVWTPEFIDFVSRCLVKN-PEERAT 228
            PP+   H +     + T+        P P + E      E +  + R L+K  P +R T
Sbjct: 266 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSE----VSEEVKMLIRNLLKTEPTQRMT 321
Query: 229 ASEMLNHEFIQRHDTDP 245
            +E +NH +I +    P
Sbjct: 322 ITEFMNHPWIMQSTKVP 338

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 45/241 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +   P +V+ YG   +   + +V E+   G +SD +R ++   + + +  +  D  +G
Sbjct: 56  MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 115
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     IHRD+ A +              C V  NQ+                    
Sbjct: 116 MAYLEEASVIHRDLAARN--------------CLVGENQV-------------------I 142
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG+   + D     +T  GT F   W +PEV     Y   +D+WS G+   E+ +E
Sbjct: 143 KVSDFGMTRFVLDDQYTSST--GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 200
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           GK PY +      +  I T     FR  +P + +      ++ C  + PE+R   S +L 
Sbjct: 201 GKIPYENRSNSEVVEDIST----GFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLR 256
Query: 235 H 235
Sbjct: 257 Q 257

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 48/252 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ D P ++K +     ++  +IV E    G + D + +++K  SE + A I+     G
Sbjct: 75  LKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEI-IKRKRFSEHDAARIIKQVFSG 133
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH- 119
           + Y+H    +HRD                                 LK  NILL ++   
Sbjct: 134 ITYMHKHNIVHRD---------------------------------LKPENILLESKEKD 160
Query: 120 --AKLADFGVAG--QLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
              K+ DFG++   Q    M  R   IGT +++APEV++   YD   D+WS G+    + 
Sbjct: 161 CDIKIIDFGLSTCFQQNTKMKDR---IGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILL 216
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEM 232
            G PP+   +    +  + T    +F  P  W   + +  D + + L  +P  R TA++ 
Sbjct: 217 SGTPPFYGKNEYDILKRVET-GKYAFDLPQ-WRTISDDAKDLIRKMLTFHPSLRITATQC 274
Query: 233 LNHEFIQRHDTD 244
           L H +IQ++ ++
Sbjct: 275 LEHPWIQKYSSE 286

>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To Mapkap Kinase-2 Length = 327

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 51/258 (19%)
Query: 3   QCDSPYVVK----YYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDT 57
           QC  P++V+    Y   Y     L IVME    G + S I     +  +E E + I+   
Sbjct: 69  QC--PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI 126
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
            + ++YLH     HRD+K        + L Y S + N I                     
Sbjct: 127 GEAIQYLHSINIAHRDVKP-------ENLLYTSKRPNAI--------------------- 158
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              KL DFG A + T +     T   TP+++APEV+    YD   DMWSLG+    +  G
Sbjct: 159 --LKLTDFGFAKE-TTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 215
Query: 178 KPPYGDIHPMRAIFMIPTK--------PPPSFREPDVWTPEFIDFVSRCLVKN-PEERAT 228
            PP+   H +     + T+        P P + E      E +  + R L+K  P +R T
Sbjct: 216 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSE----VSEEVKMLIRNLLKTEPTQRMT 271
Query: 229 ASEMLNHEFIQRHDTDPS 246
            +E +NH +I +    P 
Sbjct: 272 ITEFMNHPWIMQSTKVPQ 289

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 38/234 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WI+ME C  G +   +++RK +L    +          
Sbjct: 65  MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTA 123
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRDI                                  A N+L++     
Sbjct: 124 LAYLESKRFVHRDI---------------------------------AARNVLVSATDCV 150
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D+   + +    P  WMAPE I    +   +D+W  G+   E +  G 
Sbjct: 151 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 210
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+  +     I  I          P    P     +++C   +P  R   +E+
Sbjct: 211 KPFQGVKNNDVIGRIENG--ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 262

>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b Length = 318

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 51/258 (19%)
Query: 3   QCDSPYVVK----YYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDT 57
           QC  P++V+    Y   Y     L IVME    G + S I     +  +E E + I+   
Sbjct: 67  QC--PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI 124
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
            + ++YLH     HRD+K        + L Y S + N I                     
Sbjct: 125 GEAIQYLHSINIAHRDVKP-------ENLLYTSKRPNAI--------------------- 156
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              KL DFG A + T +     T   TP+++APEV+    YD   DMWSLG+    +  G
Sbjct: 157 --LKLTDFGFAKE-TTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 213
Query: 178 KPPYGDIHPMRAIFMIPTK--------PPPSFREPDVWTPEFIDFVSRCLVKN-PEERAT 228
            PP+   H +     + T+        P P + E      E +  + R L+K  P +R T
Sbjct: 214 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSE----VSEEVKMLIRNLLKTEPTQRMT 269
Query: 229 ASEMLNHEFIQRHDTDPS 246
            +E +NH +I +    P 
Sbjct: 270 ITEFMNHPWIMQSTKVPQ 287

>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1 Length = 319

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 51/258 (19%)
Query: 3   QCDSPYVVK----YYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDT 57
           QC  P++V+    Y   Y     L IVME    G + S I     +  +E E + I+   
Sbjct: 68  QC--PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI 125
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
            + ++YLH     HRD+K        + L Y S + N I                     
Sbjct: 126 GEAIQYLHSINIAHRDVKP-------ENLLYTSKRPNAI--------------------- 157
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              KL DFG A + T +     T   TP+++APEV+    YD   DMWSLG+    +  G
Sbjct: 158 --LKLTDFGFAKE-TTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 214
Query: 178 KPPYGDIHPMRAIFMIPTK--------PPPSFREPDVWTPEFIDFVSRCLVKN-PEERAT 228
            PP+   H +     + T+        P P + E      E +  + R L+K  P +R T
Sbjct: 215 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSE----VSEEVKMLIRNLLKTEPTQRMT 270
Query: 229 ASEMLNHEFIQRHDTDPS 246
            +E +NH +I +    P 
Sbjct: 271 ITEFMNHPWIMQSTKVPQ 288

>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 40/186 (21%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   +SP+VV+ + ++  +  L++VMEY   G + ++M      + E        + +  
Sbjct: 129 MAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMS--NYDVPEKWAKFYTAEVVLA 186
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+ +H    IHRD+K                                   N+LL+  GH 
Sbjct: 187 LDAIHSMGLIHRDVKPD---------------------------------NMLLDKHGHL 213
Query: 121 KLADFGVAGQLTDT-MAKRNTVIGTPFWMAPEVIQEIG----YDCVADMWSLGITALEMA 175
           KLADFG   ++ +T M   +T +GTP +++PEV++  G    Y    D WS+G+   EM 
Sbjct: 214 KLADFGTCMKMDETGMVHCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEML 273
Query: 176 EGKPPY 181
            G  P+
Sbjct: 274 VGDTPF 279

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 97/228 (42%), Gaps = 48/228 (21%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK------KTLSED--EIATILCDTL---KGLEYLHLRRKI 70
           L +++E+C  G++S  +R ++      K L +D   +  ++C +    KG+E+L  R+ I
Sbjct: 107 LMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLICYSFQVAKGMEFLASRKXI 166
Query: 71  HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQ 130
           HRD                                 L A NILL+ +   K+ DFG+A  
Sbjct: 167 HRD---------------------------------LAARNILLSEKNVVKICDFGLARD 193
Query: 131 L-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPM 187
           +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ + G  PY  +  +
Sbjct: 194 IYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-I 252
Query: 188 RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
              F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 253 DEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 300

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 92/228 (40%), Gaps = 48/228 (21%)
Query: 22  LWIVMEYCGAGSVSDIMR-----------LRKKTLSEDEIATILCDTLKGLEYLHLRRKI 70
           L +++E+C  G++S  +R           L K  L+ + +        KG+E+L  R+ I
Sbjct: 107 LMVIVEFCKFGNLSTYLRSKRNEFVPYKDLYKDFLTLEHLIXYSFQVAKGMEFLASRKXI 166
Query: 71  HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQ 130
           HRD                                 L A NILL+ +   K+ DFG+A  
Sbjct: 167 HRD---------------------------------LAARNILLSEKNVVKIXDFGLARD 193
Query: 131 L-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPM 187
           +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ + G  PY  +  +
Sbjct: 194 IYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-I 252
Query: 188 RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
              F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 253 DEEFXRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 300

>pdb|2OZA|A Chain A, Structure Of P38alpha Complex Length = 356

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 106/258 (41%), Gaps = 51/258 (19%)
Query: 3   QCDSPYVVK----YYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDT 57
           QC  P++V+    Y   Y     L IVME    G + S I     +  +E E + I+   
Sbjct: 69  QC--PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI 126
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
            + ++YLH     HRD+K        + L Y S + N I                     
Sbjct: 127 GEAIQYLHSINIAHRDVKP-------ENLLYTSKRPNAI--------------------- 158
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              KL DFG A + T +     T   TP+++APEV+    YD   DMWSLG+    +  G
Sbjct: 159 --LKLTDFGFAKE-TTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 215
Query: 178 KPPYGDIHPMRAIFMIPTK--------PPPSFREPDVWTPEFIDFVSRCLVKN-PEERAT 228
            PP+   H +     + T+        P P + E      E +  + R L+K  P +R T
Sbjct: 216 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSE----VSEEVKMLIRNLLKTEPTQRMT 271
Query: 229 ASEMLNHEFIQRHDTDPS 246
            +E +NH +I +    P 
Sbjct: 272 ITEFMNHPWIMQSTKVPQ 289

>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase Containing The Ferm And Kinase Domains. Length = 656

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 91/234 (38%), Gaps = 38/234 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WI+ME C  G +   +++RK +L    +          
Sbjct: 445 MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTA 503
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRDI                                  A N+L++     
Sbjct: 504 LAYLESKRFVHRDI---------------------------------AARNVLVSATDCV 530
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D+   + +    P  WMAPE I    +   +D+W  G+   E +  G 
Sbjct: 531 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 590
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+  +     I  I          P    P     +++C   +P  R   +E+
Sbjct: 591 KPFQGVKNNDVIGRIENG--ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL 642

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 38/179 (21%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL--CDTLKGLE 62
           + P++ + +  +     L+ VME+   G   D+M   +K+   DE        + +  L 
Sbjct: 82  NHPFLTQLFCCFQTPDRLFFVMEFVNGG---DLMFHIQKSRRFDEARARFYAAEIISALM 138
Query: 63  YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKL 122
           +LH +  I+RD                                 LK  N+LL+ EGH KL
Sbjct: 139 FLHDKGIIYRD---------------------------------LKLDNVLLDHEGHCKL 165
Query: 123 ADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           ADFG+  +         T  GTP ++APE++QE+ Y    D W++G+   EM  G  P+
Sbjct: 166 ADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPF 224

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 52/209 (24%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           DS ++   + ++  + +L++VM+Y   G +  ++   +  L E+     L + +  ++ +
Sbjct: 132 DSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSV 191
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H    +HRDIK                                   NIL++  GH +LAD
Sbjct: 192 HQLHYVHRDIKPD---------------------------------NILMDMNGHIRLAD 218
Query: 125 FGVAGQLT-DTMAKRNTVIGTPFWMAPEVIQEI-------GYDCVADMWSLGITALEMAE 176
           FG   +L  D   + +  +GTP +++PE++Q +       G +C  D WSLG+   EM  
Sbjct: 219 FGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPEC--DWWSLGVCMYEMLY 276
Query: 177 GKPP---------YGDIHPMRAIFMIPTK 196
           G+ P         YG I   +  F  PT+
Sbjct: 277 GETPFYAESLVETYGKIMNHKERFQFPTQ 305

>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6 Length = 362

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 100/252 (39%), Gaps = 63/252 (25%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +V++       T L IVMEY   G + + +       SEDE        + G+ Y H 
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFERI-CNAGRFSEDEARFFFQQLISGVSYCHA 133
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG--HAKLAD 124
            +  HRD                                 LK  N LL+       K+ D
Sbjct: 134 MQVCHRD---------------------------------LKLENTLLDGSPAPRLKICD 160
Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGD 183
           FG +         ++TV GTP ++APEV+ +  YD  VAD+WS G+T   M  G  P+ D
Sbjct: 161 FGYSKSSVLHSQPKSTV-GTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFED 219
Query: 184 IHPMRAIFMIPTKPPPSFRE------------PDV--WTPEFIDFVSRCLVKNPEERATA 229
                       + P +FR+            PD    +PE    +SR  V +P +R + 
Sbjct: 220 -----------PEEPKNFRKTIHRILNVQYAIPDYVHISPECRHLISRIFVADPAKRISI 268
Query: 230 SEMLNHEFIQRH 241
            E+ NHE+  ++
Sbjct: 269 PEIRNHEWFLKN 280

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 109/254 (42%), Gaps = 69/254 (27%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD       
Sbjct: 130 DVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------- 179
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  N+ +N +   K+ DFG+A    D M     
Sbjct: 180 --------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG--- 210
Query: 141 VIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPTK 196
            + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I+ ++ I  +   
Sbjct: 211 YVATRWYRAPEIMLNWMHYNMTVDIWSVGCIMAELLTGRTLFPGTDHINQLQQIMRLTGT 270
Query: 197 PPPSF--REP--------------------DVW---TPEFIDFVSRCLVKNPEERATASE 231
           PP S   R P                    DV+    P  +D + + LV + ++R TASE
Sbjct: 271 PPASVISRMPSHEARNYINSLPQMPKRNFADVFIGANPLAVDLLEKMLVLDTDKRITASE 330
Query: 232 MLNHE-FIQRHDTD 244
            L H  F Q HD D
Sbjct: 331 ALAHPYFSQYHDPD 344

>pdb|3MFR|A Chain A, Cask-4m Cam Kinase Domain, Native Length = 351

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 39/242 (16%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYC-GAGSVSDIMRLRKKTL--SEDEIATILCDTLKGLEY 63
           P++V+   +Y  +  L++V E+  GA    +I++        SE   +  +   L+ L Y
Sbjct: 86  PHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRY 145
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA--- 120
            H    IHRD+K                                   N+LL ++ ++   
Sbjct: 146 CHDNNIIHRDVKPE---------------------------------NVLLASKENSAPV 172
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFGVA QL ++       +GTP +MAPEV++   Y    D+W  G+    +  G  P
Sbjct: 173 KLGDFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLP 232
Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           +          +I  K   + R+    +    D V R L+ +P ER T  E LNH +++ 
Sbjct: 233 FYGTKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKE 292
Query: 241 HD 242
            D
Sbjct: 293 RD 294

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 45/241 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +   P +V+ YG   +   + +V E+   G +SD +R ++   + + +  +  D  +G
Sbjct: 56  MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 115
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     IHRD+ A +              C V  NQ+                    
Sbjct: 116 MAYLEEACVIHRDLAARN--------------CLVGENQV-------------------I 142
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG+   + D     +T  GT F   W +PEV     Y   +D+WS G+   E+ +E
Sbjct: 143 KVSDFGMTRFVLDDQYTSST--GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 200
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           GK PY +      +  I T     FR  +P + +      ++ C  + PE+R   S +L 
Sbjct: 201 GKIPYENRSNSEVVEDIST----GFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLR 256
Query: 235 H 235
Sbjct: 257 Q 257

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 43/236 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  + P +VK +        L++VMEY   G V D + +    + E E        +  
Sbjct: 67  MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYL-VAHGRMKEKEARAKFRQIVSA 125
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++Y H +  +HRD                                 LKA N+LL+ + + 
Sbjct: 126 VQYCHQKFIVHRD---------------------------------LKAENLLLDADMNI 152
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKP 179
           K+ADFG + + T    K +   G+P + APE+ Q   YD    D+WSLG+    +  G  
Sbjct: 153 KIADFGFSNEFT-FGNKLDEFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSL 211
Query: 180 PYG--DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           P+   ++  +R   +        +R P   + +  + + + L+ NP +R T  +++
Sbjct: 212 PFDGQNLKELRERVL-----RGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIM 262

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 45/241 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +   P +V+ YG   +   + +V E+   G +SD +R ++   + + +  +  D  +G
Sbjct: 54  MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 113
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     IHRD+ A +              C V  NQ+                    
Sbjct: 114 MAYLEEACVIHRDLAARN--------------CLVGENQV-------------------I 140
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG+   + D     +T  GT F   W +PEV     Y   +D+WS G+   E+ +E
Sbjct: 141 KVSDFGMTRFVLDDQYTSST--GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 198
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           GK PY +      +  I T     FR  +P + +      ++ C  + PE+R   S +L 
Sbjct: 199 GKIPYENRSNSEVVEDIST----GFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLR 254
Query: 235 H 235
Sbjct: 255 Q 255

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 45/241 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +   P +V+ YG   +   + +V E+   G +SD +R ++   + + +  +  D  +G
Sbjct: 76  MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 135
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     IHRD+ A +              C V  NQ+                    
Sbjct: 136 MAYLEEACVIHRDLAARN--------------CLVGENQV-------------------I 162
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG+   + D     +T  GT F   W +PEV     Y   +D+WS G+   E+ +E
Sbjct: 163 KVSDFGMTRFVLDDQYTSST--GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 220
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           GK PY +      +  I T     FR  +P + +      ++ C  + PE+R   S +L 
Sbjct: 221 GKIPYENRSNSEVVEDIST----GFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLR 276
Query: 235 H 235
Sbjct: 277 Q 277

>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 361

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 100/252 (39%), Gaps = 63/252 (25%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +V++       T L IVMEY   G + + +       SEDE        + G+ Y H 
Sbjct: 74  PNIVRFKEVILTPTHLAIVMEYASGGELFERI-CNAGRFSEDEARFFFQQLISGVSYCHA 132
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG--HAKLAD 124
            +  HRD                                 LK  N LL+       K+ D
Sbjct: 133 MQVCHRD---------------------------------LKLENTLLDGSPAPRLKICD 159
Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGD 183
           FG +         ++TV GTP ++APEV+ +  YD  VAD+WS G+T   M  G  P+ D
Sbjct: 160 FGYSKSSVLHSQPKSTV-GTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFED 218
Query: 184 IHPMRAIFMIPTKPPPSFRE------------PDV--WTPEFIDFVSRCLVKNPEERATA 229
                       + P +FR+            PD    +PE    +SR  V +P +R + 
Sbjct: 219 -----------PEEPKNFRKTIHRILNVQYAIPDYVHISPECRHLISRIFVADPAKRISI 267
Query: 230 SEMLNHEFIQRH 241
            E+ NHE+  ++
Sbjct: 268 PEIRNHEWFLKN 279

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 43/236 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  + P +VK +        L++VMEY   G V D + +    + E E        +  
Sbjct: 67  MKVLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYL-VAHGRMKEKEARAKFRQIVSA 125
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++Y H +  +HRD                                 LKA N+LL+ + + 
Sbjct: 126 VQYCHQKFIVHRD---------------------------------LKAENLLLDADMNI 152
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKP 179
           K+ADFG + + T    K +   G P + APE+ Q   YD    D+WSLG+    +  G  
Sbjct: 153 KIADFGFSNEFT-FGNKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSL 211
Query: 180 PYG--DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           P+   ++  +R   +        +R P   + +  + + + L+ NP +R T  +++
Sbjct: 212 PFDGQNLKELRERVL-----RGKYRIPFYMSTDCENLLKKFLILNPSKRGTLEQIM 262

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 45/241 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +   P +V+ YG   +   + +V E+   G +SD +R ++   + + +  +  D  +G
Sbjct: 59  MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 118
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     IHRD+ A +              C V  NQ+                    
Sbjct: 119 MAYLEEACVIHRDLAARN--------------CLVGENQV-------------------I 145
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG+   + D     +T  GT F   W +PEV     Y   +D+WS G+   E+ +E
Sbjct: 146 KVSDFGMTRFVLDDQYTSST--GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 203
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           GK PY +      +  I T     FR  +P + +      ++ C  + PE+R   S +L 
Sbjct: 204 GKIPYENRSNSEVVEDIST----GFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLR 259
Query: 235 H 235
Sbjct: 260 Q 260

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 92/230 (40%), Gaps = 50/230 (21%)
Query: 22  LWIVMEYCGAGSVSDIMR-------------LRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           L +++E+C  G++S  +R             L K  L+ + +        KG+E+L  R+
Sbjct: 109 LMVIVEFCKFGNLSTYLRSKRNEFVPYKPEDLYKDFLTLEHLIXYSFQVAKGMEFLASRK 168
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            IHRD                                 L A NILL+ +   K+ DFG+A
Sbjct: 169 XIHRD---------------------------------LAARNILLSEKNVVKICDFGLA 195
Query: 129 GQLT-DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIH 185
             +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ + G  PY  + 
Sbjct: 196 RDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 255
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
            +   F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 256 -IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 304

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 41/232 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEIATIL--CDT 57
           + +  S ++V    ++   TDL +VM     G +   I  + +      E   I      
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQI 298
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           + GLE+LH R  I+RD                                 LK  N+LL+ +
Sbjct: 299 VSGLEHLHQRNIIYRD---------------------------------LKPENVLLDDD 325
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           G+ +++D G+A +L     K     GTP +MAPE++    YD   D ++LG+T  EM   
Sbjct: 326 GNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAA 385
Query: 178 KPPY---GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
           + P+   G+    + +     +   ++  PD ++P   DF    L K+PE+R
Sbjct: 386 RGPFRARGEKVENKELKQRVLEQAVTY--PDKFSPASKDFCEALLQKDPEKR 435

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 41/232 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEIATIL--CDT 57
           + +  S ++V    ++   TDL +VM     G +   I  + +      E   I      
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQI 298
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           + GLE+LH R  I+RD                                 LK  N+LL+ +
Sbjct: 299 VSGLEHLHQRNIIYRD---------------------------------LKPENVLLDDD 325
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           G+ +++D G+A +L     K     GTP +MAPE++    YD   D ++LG+T  EM   
Sbjct: 326 GNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAA 385
Query: 178 KPPY---GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
           + P+   G+    + +     +   ++  PD ++P   DF    L K+PE+R
Sbjct: 386 RGPFRARGEKVENKELKQRVLEQAVTY--PDKFSPASKDFCEALLQKDPEKR 435

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 41/232 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEIATIL--CDT 57
           + +  S ++V    ++   TDL +VM     G +   I  + +      E   I      
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQI 298
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           + GLE+LH R  I+RD                                 LK  N+LL+ +
Sbjct: 299 VSGLEHLHQRNIIYRD---------------------------------LKPENVLLDDD 325
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           G+ +++D G+A +L     K     GTP +MAPE++    YD   D ++LG+T  EM   
Sbjct: 326 GNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAA 385
Query: 178 KPPY---GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
           + P+   G+    + +     +   ++  PD ++P   DF    L K+PE+R
Sbjct: 386 RGPFRARGEKVENKELKQRVLEQAVTY--PDKFSPASKDFCEALLQKDPEKR 435

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 41/232 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEIATIL--CDT 57
           + +  S ++V    ++   TDL +VM     G +   I  + +      E   I      
Sbjct: 239 LAKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQI 298
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           + GLE+LH R  I+RD                                 LK  N+LL+ +
Sbjct: 299 VSGLEHLHQRNIIYRD---------------------------------LKPENVLLDDD 325
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           G+ +++D G+A +L     K     GTP +MAPE++    YD   D ++LG+T  EM   
Sbjct: 326 GNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAA 385
Query: 178 KPPY---GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
           + P+   G+    + +     +   ++  PD ++P   DF    L K+PE+R
Sbjct: 386 RGPFRARGEKVENKELKQRVLEQAVTY--PDKFSPASKDFCEALLQKDPEKR 435

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 100/241 (41%), Gaps = 45/241 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +   P +V+ YG   +   + +V E+   G +SD +R ++   + + +  +  D  +G
Sbjct: 57  MMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 116
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     IHRD+ A +              C V  NQ+                    
Sbjct: 117 MAYLEEACVIHRDLAARN--------------CLVGENQV-------------------I 143
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG+   + D     +T  GT F   W +PEV     Y   +D+WS G+   E+ +E
Sbjct: 144 KVSDFGMTRFVLDDQYTSST--GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 201
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           GK PY +      +  I T     FR  +P + +      ++ C  + PE+R   S +L 
Sbjct: 202 GKIPYENRSNSEVVEDIST----GFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLR 257
Query: 235 H 235
Sbjct: 258 Q 258

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 103/251 (41%), Gaps = 45/251 (17%)
Query: 5   DSPYVVKYYGSYFKNTD-LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEY 63
           D P  +    S F+  D L+ VMEY   G +   ++   K   E +      +   GL +
Sbjct: 77  DKPPFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHIQQVGK-FKEPQAVFYAAEISIGLFF 135
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
           LH R  I+RD                                 LK  N++L++EGH K+A
Sbjct: 136 LHKRGIIYRD---------------------------------LKLDNVMLDSEGHIKIA 162
Query: 124 DFGVAGQ-LTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYG 182
           DFG+  + + D +  R    GTP ++APE+I    Y    D W+ G+   EM  G+PP+ 
Sbjct: 163 DFGMCKEHMMDGVTTRE-FCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPF- 220
Query: 183 DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS-----EMLNHEF 237
           D      +F    +   S+  P   + E +      + K+P +R         ++  H F
Sbjct: 221 DGEDEDELFQSIMEHNVSY--PKSLSKEAVSICKGLMTKHPAKRLGCGPEGERDVREHAF 278
Query: 238 IQRHDTDPSQN 248
            +R D +  +N
Sbjct: 279 FRRIDWEKLEN 289

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 43/247 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D   +++ Y ++    D+ +VMEY   G + D +      L+E +    +    +G
Sbjct: 140 MNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEG 199
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL-LNTEG- 118
           + ++H                                 Q+Y     LK  NIL +N +  
Sbjct: 200 IRHMH---------------------------------QMYILHLDLKPENILCVNRDAK 226
Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA---DMWSLGITALEMA 175
             K+ DFG+A +      K     GTP ++APEV   + YD V+   DMWS+G+ A  + 
Sbjct: 227 QIKIIDFGLARRYK-PREKLKVNFGTPEFLAPEV---VNYDFVSFPTDMWSVGVIAYMLL 282
Query: 176 EGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
            G  P+ GD        ++  +      E    + E  +F+S+ L+K    R +ASE L 
Sbjct: 283 SGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEALK 342
Query: 235 HEFIQRH 241
           H ++  H
Sbjct: 343 HPWLSDH 349

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 112/252 (44%), Gaps = 34/252 (13%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++  D P ++K +  +      ++V E+   G + + +  R K   E + A I+   L G
Sbjct: 100 LKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHK-FDECDAANIMKQILSG 158
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH    +HRDIK                  N++          L+  N LLN     
Sbjct: 159 ICYLHKHNIVHRDIKPE----------------NIL----------LENKNSLLNI---- 188
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG++   +     R+  +GT +++APEV+++  Y+   D+WS G+    +  G PP
Sbjct: 189 KIVDFGLSSFFSKDYKLRDR-LGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPP 246
Query: 181 YGDIHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           +G  +    I  +   K    F +    + E  + +   L  +  +R TA E LN  +I+
Sbjct: 247 FGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSRWIK 306
Query: 240 RHDTDPSQNGGK 251
           ++  + +++  K
Sbjct: 307 KYANNINKSDQK 318

>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4-Ylamino)-2- Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide Length = 320

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 105/258 (40%), Gaps = 51/258 (19%)
Query: 3   QCDSPYVVK----YYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDT 57
           QC  P++V+    Y   Y     L IVME    G + S I     +  +E E + I+   
Sbjct: 67  QC--PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI 124
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
            + ++YLH     HRD+K        + L Y S + N I                     
Sbjct: 125 GEAIQYLHSINIAHRDVKP-------ENLLYTSKRPNAI--------------------- 156
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              KL DFG A + T   +       TP+++APEV+    YD   DMWSLG+    +  G
Sbjct: 157 --LKLTDFGFAKETTSHNSLTEPCY-TPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 213
Query: 178 KPPYGDIHPMRAIFMIPTK--------PPPSFREPDVWTPEFIDFVSRCLVKN-PEERAT 228
            PP+   H +     + T+        P P + E      E +  + R L+K  P +R T
Sbjct: 214 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSE----VSEEVKMLIRNLLKTEPTQRMT 269
Query: 229 ASEMLNHEFIQRHDTDPS 246
            +E +NH +I +    P 
Sbjct: 270 ITEFMNHPWIMQSTKVPQ 287

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 96/232 (41%), Gaps = 52/232 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK------KTLSED------EIATILCDTL---KGLEYLHL 66
           L +++E+C  G++S  +R ++      K   ED       +  ++C +    KG+E+L  
Sbjct: 98  LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS 157
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ IHRD                                 L A NILL+ +   K+ DFG
Sbjct: 158 RKCIHRD---------------------------------LAARNILLSEKNVVKICDFG 184
Query: 127 VAGQLT-DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGD 183
           +A  +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ + G  PY  
Sbjct: 185 LARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 244
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           +  +   F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 245 VK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 295

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 96/232 (41%), Gaps = 52/232 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK------KTLSED------EIATILCDTL---KGLEYLHL 66
           L +++E+C  G++S  +R ++      K   ED       +  ++C +    KG+E+L  
Sbjct: 107 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS 166
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ IHRD                                 L A NILL+ +   K+ DFG
Sbjct: 167 RKCIHRD---------------------------------LAARNILLSEKNVVKICDFG 193
Query: 127 VAGQLT-DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGD 183
           +A  +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ + G  PY  
Sbjct: 194 LARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 253
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           +  +   F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 254 VK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 304

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 96/232 (41%), Gaps = 52/232 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK------KTLSED------EIATILCDTL---KGLEYLHL 66
           L +++E+C  G++S  +R ++      K   ED       +  ++C +    KG+E+L  
Sbjct: 107 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS 166
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ IHRD                                 L A NILL+ +   K+ DFG
Sbjct: 167 RKCIHRD---------------------------------LAARNILLSEKNVVKICDFG 193
Query: 127 VAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGD 183
           +A  +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ + G  PY  
Sbjct: 194 LARDIYKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 253
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           +  +   F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 254 VK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 304

>pdb|2ESM|A Chain A, Crystal Structure Of Rock 1 Bound To Fasudil Length = 415

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 40/186 (21%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   +SP+VV+ + ++  +  L++VMEY   G + ++M      + E        + +  
Sbjct: 128 MAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS--NYDVPEKWARFYTAEVVLA 185
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+ +H    IHRD+K                                   N+LL+  GH 
Sbjct: 186 LDAIHSMGFIHRDVKPD---------------------------------NMLLDKSGHL 212
Query: 121 KLADFGVAGQLT-DTMAKRNTVIGTPFWMAPEVIQEIG----YDCVADMWSLGITALEMA 175
           KLADFG   ++  + M + +T +GTP +++PEV++  G    Y    D WS+G+   EM 
Sbjct: 213 KLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML 272
Query: 176 EGKPPY 181
            G  P+
Sbjct: 273 VGDTPF 278

>pdb|3V8S|A Chain A, Human Rho-Associated Protein Kinase 1 (Rock 1) In Complex With Indazole Derivative (Compound 18) Length = 410

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 40/186 (21%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   +SP+VV+ + ++  +  L++VMEY   G + ++M      + E        + +  
Sbjct: 123 MAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS--NYDVPEKWARFYTAEVVLA 180
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+ +H    IHRD+K                                   N+LL+  GH 
Sbjct: 181 LDAIHSMGFIHRDVKPD---------------------------------NMLLDKSGHL 207
Query: 121 KLADFGVAGQLT-DTMAKRNTVIGTPFWMAPEVIQEIG----YDCVADMWSLGITALEMA 175
           KLADFG   ++  + M + +T +GTP +++PEV++  G    Y    D WS+G+   EM 
Sbjct: 208 KLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML 267
Query: 176 EGKPPY 181
            G  P+
Sbjct: 268 VGDTPF 273

>pdb|2V55|A Chain A, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 406

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 40/186 (21%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   +SP+VV+ + ++  +  L++VMEY   G + ++M      + E        + +  
Sbjct: 128 MAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMS--NYDVPEKWARFYTAEVVLA 185
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+ +H    IHRD+K                                   N+LL+  GH 
Sbjct: 186 LDAIHSMGFIHRDVKPD---------------------------------NMLLDKSGHL 212
Query: 121 KLADFGVAGQLT-DTMAKRNTVIGTPFWMAPEVIQEIG----YDCVADMWSLGITALEMA 175
           KLADFG   ++  + M + +T +GTP +++PEV++  G    Y    D WS+G+   EM 
Sbjct: 213 KLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML 272
Query: 176 EGKPPY 181
            G  P+
Sbjct: 273 VGDTPF 278

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 96/232 (41%), Gaps = 52/232 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK------KTLSED------EIATILCDTL---KGLEYLHL 66
           L +++E+C  G++S  +R ++      K   ED       +  ++C +    KG+E+L  
Sbjct: 107 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS 166
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ IHRD                                 L A NILL+ +   K+ DFG
Sbjct: 167 RKCIHRD---------------------------------LAARNILLSEKNVVKICDFG 193
Query: 127 VAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGD 183
           +A  +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ + G  PY  
Sbjct: 194 LARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 253
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           +  +   F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 254 VK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 304

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 95/232 (40%), Gaps = 52/232 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK------KTLSED------EIATILCDTL---KGLEYLHL 66
           L ++ E+C  G++S  +R ++      K   ED       +  ++C +    KG+E+L  
Sbjct: 98  LMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS 157
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ IHRD                                 L A NILL+ +   K+ DFG
Sbjct: 158 RKCIHRD---------------------------------LAARNILLSEKNVVKICDFG 184
Query: 127 VAGQLT-DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGD 183
           +A  +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ + G  PY  
Sbjct: 185 LARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 244
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           +  +   F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 245 VK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 295

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 92/231 (39%), Gaps = 51/231 (22%)
Query: 22  LWIVMEYCGAGSVSDIMR--------------LRKKTLSEDEIATILCDTLKGLEYLHLR 67
           L +++E+C  G++S  +R              L K  L+ + +        KG+E+L  R
Sbjct: 108 LMVIVEFCKFGNLSTYLRSKRNEFVPYKTPEDLYKDFLTLEHLICYSFQVAKGMEFLASR 167
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
           + IHRD                                 L A NILL+ +   K+ DFG+
Sbjct: 168 KCIHRD---------------------------------LAARNILLSEKNVVKICDFGL 194
Query: 128 AGQLT-DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDI 184
           A  +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ + G  PY  +
Sbjct: 195 ARDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 254
Query: 185 HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
             +   F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 255 K-IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 304

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 96/232 (41%), Gaps = 52/232 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK------KTLSED------EIATILCDTL---KGLEYLHL 66
           L +++E+C  G++S  +R ++      K   ED       +  ++C +    KG+E+L  
Sbjct: 144 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS 203
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ IHRD                                 L A NILL+ +   K+ DFG
Sbjct: 204 RKCIHRD---------------------------------LAARNILLSEKNVVKICDFG 230
Query: 127 VAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGD 183
           +A  +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ + G  PY  
Sbjct: 231 LARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           +  +   F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 291 VK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 341

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 102/269 (37%), Gaps = 61/269 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++     +VK Y        L +V E+     +  ++ + +  L      + L   L G
Sbjct: 54  LKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNG 112
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + Y H RR +HRD                                 LK  N+L+N EG  
Sbjct: 113 IAYCHDRRVLHRD---------------------------------LKPQNLLINREGEL 139
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-EIGYDCVADMWSLGITALEMAEGKP 179
           K+ADFG+A      + K    I T ++ AP+V+     Y    D+WS+G    EM  G P
Sbjct: 140 KIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTP 199
Query: 180 PY---GDIHPMRAIFMIPTKPP----PSFREPDVWTPEF-------------------ID 213
            +    +   +  IF I   P     P+  E   + P F                   ID
Sbjct: 200 LFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGID 259
Query: 214 FVSRCLVKNPEERATASEMLNHEFIQRHD 242
            +S+ L  +P +R TA + L H + + ++
Sbjct: 260 LLSKMLKLDPNQRITAKQALEHAYFKENN 288

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 95/232 (40%), Gaps = 52/232 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK------KTLSED------EIATILCDTL---KGLEYLHL 66
           L ++ E+C  G++S  +R ++      K   ED       +  ++C +    KG+E+L  
Sbjct: 98  LMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS 157
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ IHRD                                 L A NILL+ +   K+ DFG
Sbjct: 158 RKCIHRD---------------------------------LAARNILLSEKNVVKICDFG 184
Query: 127 VAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGD 183
           +A  +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ + G  PY  
Sbjct: 185 LARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 244
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           +  +   F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 245 VK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 295

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 96/232 (41%), Gaps = 52/232 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK------KTLSED------EIATILCDTL---KGLEYLHL 66
           L +++E+C  G++S  +R ++      K   ED       +  ++C +    KG+E+L  
Sbjct: 109 LMVIVEFCKFGNLSTYLRSKRNEFVPYKEAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS 168
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ IHRD                                 L A NILL+ +   K+ DFG
Sbjct: 169 RKCIHRD---------------------------------LAARNILLSEKNVVKICDFG 195
Query: 127 VAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGD 183
           +A  +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ + G  PY  
Sbjct: 196 LARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 255
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           +  +   F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 256 VK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 306

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 95/232 (40%), Gaps = 52/232 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK------KTLSED------EIATILCDTL---KGLEYLHL 66
           L ++ E+C  G++S  +R ++      K   ED       +  ++C +    KG+E+L  
Sbjct: 98  LMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS 157
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ IHRD                                 L A NILL+ +   K+ DFG
Sbjct: 158 RKCIHRD---------------------------------LAARNILLSEKNVVKICDFG 184
Query: 127 VAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGD 183
           +A  +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ + G  PY  
Sbjct: 185 LARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 244
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           +  +   F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 245 VK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 295

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 36/182 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  + P +VK +        L++VMEY   G V D +    + + E E        +  
Sbjct: 68  MKILNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGR-MKEKEARAKFRQIVSA 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++Y H +  +HRD                                 LKA N+LL+ + + 
Sbjct: 127 VQYCHQKYIVHRD---------------------------------LKAENLLLDGDMNI 153
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKP 179
           K+ADFG + + T    K +T  G+P + APE+ Q   YD    D+WSLG+    +  G  
Sbjct: 154 KIADFGFSNEFT-VGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSL 212
Query: 180 PY 181
           P+
Sbjct: 213 PF 214

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 61/269 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++     +VK Y        L +V E+     +  ++ + +  L      + L   L G
Sbjct: 54  LKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNG 112
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + Y H RR +HRD                                 LK  N+L+N EG  
Sbjct: 113 IAYCHDRRVLHRD---------------------------------LKPQNLLINREGEL 139
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-EIGYDCVADMWSLGITALEMAEGKP 179
           K+ADFG+A      + K    + T ++ AP+V+     Y    D+WS+G    EM  G P
Sbjct: 140 KIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGAP 199
Query: 180 PY---GDIHPMRAIFMIPTKPP----PSFREPDVWTPEF-------------------ID 213
            +    +   +  IF I   P     P+  E   + P F                   ID
Sbjct: 200 LFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGID 259
Query: 214 FVSRCLVKNPEERATASEMLNHEFIQRHD 242
            +S+ L  +P +R TA + L H + + ++
Sbjct: 260 LLSKMLKLDPNQRITAKQALEHAYFKENN 288

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 61/269 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++     +VK Y        L +V E+     +  ++ + +  L      + L   L G
Sbjct: 54  LKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNG 112
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + Y H RR +HRD                                 LK  N+L+N EG  
Sbjct: 113 IAYCHDRRVLHRD---------------------------------LKPQNLLINREGEL 139
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-EIGYDCVADMWSLGITALEMAEGKP 179
           K+ADFG+A      + K    + T ++ AP+V+     Y    D+WS+G    EM  G P
Sbjct: 140 KIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTP 199
Query: 180 PY---GDIHPMRAIFMIPTKPP----PSFREPDVWTPEF-------------------ID 213
            +    +   +  IF I   P     P+  E   + P F                   ID
Sbjct: 200 LFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGID 259
Query: 214 FVSRCLVKNPEERATASEMLNHEFIQRHD 242
            +S+ L  +P +R TA + L H + + ++
Sbjct: 260 LLSKMLKLDPNQRITAKQALEHAYFKENN 288

>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex With Gold Length = 362

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 99/252 (39%), Gaps = 63/252 (25%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +V++       T L IVMEY   G + + +       SEDE        + G+ Y H 
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFERI-CNAGRFSEDEARFFFQQLISGVSYCHA 133
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG--HAKLAD 124
            +  HRD                                 LK  N LL+       K+  
Sbjct: 134 MQVCHRD---------------------------------LKLENTLLDGSPAPRLKICA 160
Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGD 183
           FG +         ++TV GTP ++APEV+ +  YD  VAD+WS G+T   M  G  P+ D
Sbjct: 161 FGYSKSSVLHSQPKDTV-GTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFED 219
Query: 184 IHPMRAIFMIPTKPPPSFRE------------PDV--WTPEFIDFVSRCLVKNPEERATA 229
                       + P +FR+            PD    +PE    +SR  V +P +R + 
Sbjct: 220 -----------PEEPKNFRKTIHRILNVQYAIPDYVHISPECRHLISRIFVADPAKRISI 268
Query: 230 SEMLNHEFIQRH 241
            E+ NHE+  ++
Sbjct: 269 PEIRNHEWFLKN 280

>pdb|3TAC|A Chain A, Crystal Structure Of The Liprin-AlphaCASK COMPLEX Length = 361

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 33/239 (13%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYC-GAGSVSDIMRLRKKTL--SEDEIATILCDTLKGLEY 63
           P++V+   +Y  +  L++V E+  GA    +I++        SE   +  +   L+ L Y
Sbjct: 88  PHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRY 147
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
            H    IHRD+K                 C ++ ++                     KL 
Sbjct: 148 CHDNNIIHRDVKP---------------HCVLLASK---------------ENSAPVKLG 177
Query: 124 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD 183
            FGVA QL ++       +GTP +MAPEV++   Y    D+W  G+    +  G  P+  
Sbjct: 178 GFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYG 237
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD 242
                   +I  K   + R+    +    D V R L+ +P ER T  E LNH +++  D
Sbjct: 238 TKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKERD 296

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 10/147 (6%)
Query: 107 LKAGNILLNTE---GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD 163
           LK  N+LL ++      KLADFG+A ++           GTP +++PEV+++  Y    D
Sbjct: 129 LKPENLLLASKCKGAAVKLADFGLAIEVQGDQQAWFGFAGTPGYLSPEVLRKEAYGKPVD 188
Query: 164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK----PPPSFREPDVWTPEFIDFVSRCL 219
           +W+ G+    +  G PP+ D    +    I       P P   E D  TPE  + +++ L
Sbjct: 189 IWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSP---EWDTVTPEAKNLINQML 245
Query: 220 VKNPEERATASEMLNHEFIQRHDTDPS 246
             NP +R TA E L H ++ +  T  S
Sbjct: 246 TINPAKRITAHEALKHPWVCQRSTVAS 272

>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase Length = 362

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 99/252 (39%), Gaps = 63/252 (25%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +V++       T L IVMEY   G + + +       SEDE        + G+ Y H 
Sbjct: 75  PNIVRFKEVILTPTHLAIVMEYASGGELFERI-CNAGRFSEDEARFFFQQLISGVSYCHA 133
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG--HAKLAD 124
            +  HRD                                 LK  N LL+       K+  
Sbjct: 134 MQVCHRD---------------------------------LKLENTLLDGSPAPRLKICA 160
Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGD 183
           FG +         ++TV GTP ++APEV+ +  YD  VAD+WS G+T   M  G  P+ D
Sbjct: 161 FGYSKSSVLHSQPKSTV-GTPAYIAPEVLLKKEYDGKVADVWSCGVTLYVMLVGAYPFED 219
Query: 184 IHPMRAIFMIPTKPPPSFRE------------PDV--WTPEFIDFVSRCLVKNPEERATA 229
                       + P +FR+            PD    +PE    +SR  V +P +R + 
Sbjct: 220 -----------PEEPKNFRKTIHRILNVQYAIPDYVHISPECRHLISRIFVADPAKRISI 268
Query: 230 SEMLNHEFIQRH 241
            E+ NHE+  ++
Sbjct: 269 PEIRNHEWFLKN 280

>pdb|3C0G|A Chain A, Cask Cam-kinase Domain- 3'-amp Complex, P1 Form Length = 351

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 33/239 (13%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYC-GAGSVSDIMRLRKKTL--SEDEIATILCDTLKGLEY 63
           P++V+   +Y  +  L++V E+  GA    +I++        SE   +  +   L+ L Y
Sbjct: 86  PHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRY 145
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
            H    IHRD+K                 C ++ ++                     KL 
Sbjct: 146 CHDNNIIHRDVKP---------------HCVLLASK---------------ENSAPVKLG 175
Query: 124 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD 183
            FGVA QL ++       +GTP +MAPEV++   Y    D+W  G+    +  G  P+  
Sbjct: 176 GFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYG 235
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD 242
                   +I  K   + R+    +    D V R L+ +P ER T  E LNH +++  D
Sbjct: 236 TKERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKERD 294

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D+PY+V+  G   +   L +VME  G G +   +  +++ +    +A +L     G
Sbjct: 64  MHQLDNPYIVRLIG-VCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMG 122
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL  +  +HRD                                 L A N+LL    +A
Sbjct: 123 MKYLEEKNFVHRD---------------------------------LAARNVLLVNRHYA 149
Query: 121 KLADFGVAGQL--TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L   D+     +    P  W APE I    +   +D+WS G+T  E ++ 
Sbjct: 150 KISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSY 209
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
           G+ PY  +     +  I  +       P    PE    +S C +   E+R
Sbjct: 210 GQKPYKKMKGPEVMAFI--EQGKRMECPPECPPELYALMSDCWIYKWEDR 257

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 49/273 (17%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL-CDTLKGLEYLHLRR---------- 68
           TD + + E  G G+ S + R  KKT +++  A I+    L   ++  L R          
Sbjct: 30  TDDYQLFEELGKGAFSVVRRCVKKTPTQEYAAKIINTKKLSARDHQKLEREARICRLLKH 89
Query: 69  ----KIHRDI-KAGSGTLVYD-------------RLDYCSIKCNVITNQIYKTLFR---- 106
               ++H  I + G   LV+D             R  Y     +   +QI +++      
Sbjct: 90  PNIVRLHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQH 149
Query: 107 ------LKAGNILLNTE---GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG 157
                 LK  N+LL ++      KLADFG+A ++           GTP +++PEV+++  
Sbjct: 150 DIVHRDLKPENLLLASKCKGAAVKLADFGLAIEVQGEQQAWFGFAGTPGYLSPEVLRKDP 209
Query: 158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK----PPPSFREPDVWTPEFID 213
           Y    D+W+ G+    +  G PP+ D    +    I       P P   E D  TPE  +
Sbjct: 210 YGKPVDIWACGVILYILLVGYPPFWDEDQHKLYQQIKAGAYDFPSP---EWDTVTPEAKN 266
Query: 214 FVSRCLVKNPEERATASEMLNHEFIQRHDTDPS 246
            +++ L  NP +R TA + L H ++ +  T  S
Sbjct: 267 LINQMLTINPAKRITADQALKHPWVCQRSTVAS 299

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 105/274 (38%), Gaps = 64/274 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P +V           L +V E+     +  ++   K  L + +I   L   L+G
Sbjct: 73  LKELHHPNIVSLIDVIHSERCLTLVFEFM-EKDLKKVLDENKTGLQDSQIKIYLYQLLRG 131
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + + H  R +HRD                                 LK  N+L+N++G  
Sbjct: 132 VAHCHQHRILHRD---------------------------------LKPQNLLINSDGAL 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-EIGYDCVADMWSLGITALEMAEGKP 179
           KLADFG+A      +      + T ++ AP+V+     Y    D+WS+G    EM  GKP
Sbjct: 159 KLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKP 218
Query: 180 PY---GDIHPMRAIFMIPTKPP----PSFREPDVW----------------TPEF----I 212
            +    D   +  IF I   P     P  +E  +W                 P F    I
Sbjct: 219 LFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGI 278
Query: 213 DFVSRCLVKNPEERATASEMLNHEFIQRHDTDPS 246
           D +S  L  +P +R +A + +NH + +  D DP 
Sbjct: 279 DLLSNMLCFDPNKRISARDAMNHPYFK--DLDPQ 310

>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain Length = 343

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYD----- 159
           LK  N L+  +G  KL DFG+A Q+    T   +++ +GT  +M PE I+++        
Sbjct: 134 LKPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGK 192
Query: 160 ------CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFID 213
                   +D+WSLG     M  GK P+  I    +       P      PD+   +  D
Sbjct: 193 SKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQD 252
Query: 214 FVSRCLVKNPEERATASEMLNHEFIQ 239
            +  CL ++P++R +  E+L H ++Q
Sbjct: 253 VLKCCLKRDPKQRISIPELLAHPYVQ 278

>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3 Length = 361

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 93/245 (37%), Gaps = 49/245 (20%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +V++       T L I+MEY   G + + +       SEDE        L G+ Y H 
Sbjct: 76  PNIVRFKEVILTPTHLAIIMEYASGGELYERI-CNAGRFSEDEARFFFQQLLSGVSYCHS 134
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG--HAKLAD 124
            +  HRD                                 LK  N LL+       K+ D
Sbjct: 135 MQICHRD---------------------------------LKLENTLLDGSPAPRLKICD 161
Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGD 183
           FG +         ++TV GTP ++APEV+    YD  +AD+WS G+T   M  G  P+ D
Sbjct: 162 FGYSKSSVLHSQPKSTV-GTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFED 220
Query: 184 IHPMR-------AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE 236
               R        I  +    P   R     +PE    +SR  V +P  R +  E+  H 
Sbjct: 221 PEEPRDYRKTIQRILSVKYSIPDDIR----ISPECCHLISRIFVADPATRISIPEIKTHS 276
Query: 237 FIQRH 241
           +  ++
Sbjct: 277 WFLKN 281

>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715 Length = 317

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 103/250 (41%), Gaps = 49/250 (19%)
Query: 3   QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLE 62
           Q  S  +++ Y     +  +++VME CG   ++  ++ +KK++   E  +   + L+ + 
Sbjct: 68  QQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLK-KKKSIDPWERKSYWKNMLEAVH 125
Query: 63  YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKL 122
            +H    +H D                                 LK  N L+  +G  KL
Sbjct: 126 TIHQHGIVHSD---------------------------------LKPANFLI-VDGMLKL 151
Query: 123 ADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYD-----------CVADMWSLGI 169
            DFG+A Q+    T   +++ +GT  +M PE I+++                +D+WSLG 
Sbjct: 152 IDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGC 211
Query: 170 TALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA 229
               M  GK P+  I    +       P      PD+   +  D +  CL ++P++R + 
Sbjct: 212 ILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISI 271
Query: 230 SEMLNHEFIQ 239
            E+L H ++Q
Sbjct: 272 PELLAHPYVQ 281

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 105/274 (38%), Gaps = 64/274 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P +V           L +V E+     +  ++   K  L + +I   L   L+G
Sbjct: 73  LKELHHPNIVSLIDVIHSERCLTLVFEFM-EKDLKKVLDENKTGLQDSQIKIYLYQLLRG 131
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + + H  R +HRD                                 LK  N+L+N++G  
Sbjct: 132 VAHCHQHRILHRD---------------------------------LKPQNLLINSDGAL 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-EIGYDCVADMWSLGITALEMAEGKP 179
           KLADFG+A      +      + T ++ AP+V+     Y    D+WS+G    EM  GKP
Sbjct: 159 KLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKP 218
Query: 180 PY---GDIHPMRAIFMIPTKPP----PSFREPDVW----------------TPEF----I 212
            +    D   +  IF I   P     P  +E  +W                 P F    I
Sbjct: 219 LFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGI 278
Query: 213 DFVSRCLVKNPEERATASEMLNHEFIQRHDTDPS 246
           D +S  L  +P +R +A + +NH + +  D DP 
Sbjct: 279 DLLSNMLCFDPNKRISARDAMNHPYFK--DLDPQ 310

>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (ttk) Length = 313

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYD----- 159
           LK  N L+  +G  KL DFG+A Q+    T   +++ +GT  +M PE I+++        
Sbjct: 153 LKPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGK 211
Query: 160 ------CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFID 213
                   +D+WSLG     M  GK P+  I    +       P      PD+   +  D
Sbjct: 212 SKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQD 271
Query: 214 FVSRCLVKNPEERATASEMLNHEFIQ 239
            +  CL ++P++R +  E+L H ++Q
Sbjct: 272 VLKCCLKRDPKQRISIPELLAHPYVQ 297

>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2- Yl)amino]benzamide Length = 320

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYD----- 159
           LK  N L+  +G  KL DFG+A Q+    T   +++ +GT  +M PE I+++        
Sbjct: 133 LKPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGK 191
Query: 160 ------CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFID 213
                   +D+WSLG     M  GK P+  I    +       P      PD+   +  D
Sbjct: 192 SKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQD 251
Query: 214 FVSRCLVKNPEERATASEMLNHEFIQ 239
            +  CL ++P++R +  E+L H ++Q
Sbjct: 252 VLKCCLKRDPKQRISIPELLAHPYVQ 277

>pdb|4G3G|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) V408l Bound To A 2-(aminothiazolyl)phenol (cmp3) Length = 350

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 94/234 (40%), Gaps = 40/234 (17%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
            SP +V  YG+  +   + I ME    GS+  +++ +   L ED     L   L+GLEYL
Sbjct: 122 SSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIK-QMGCLPEDRALYYLGQALEGLEYL 180
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLA 123
           H RR +H D+KA                                  N+LL+++G  A L 
Sbjct: 181 HTRRILHGDVKAD---------------------------------NVLLSSDGSRAALC 207
Query: 124 DFGVA-----GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           DFG A       L  ++   + + GT   MAPEV+     D   D+WS     L M  G 
Sbjct: 208 DFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGC 267
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+           I ++PPP    P    P     +   L K P  RA+A E+
Sbjct: 268 HPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMEL 321

>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) Bound To A 2-(aminothiazoly)phenol (cmp2) Length = 336

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 94/234 (40%), Gaps = 40/234 (17%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
            SP +V  YG+  +   + I ME    GS+  +++ +   L ED     L   L+GLEYL
Sbjct: 108 SSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIK-QMGCLPEDRALYYLGQALEGLEYL 166
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLA 123
           H RR +H D+KA                                  N+LL+++G  A L 
Sbjct: 167 HTRRILHGDVKAD---------------------------------NVLLSSDGSRAALC 193
Query: 124 DFGVA-----GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           DFG A       L  ++   + + GT   MAPEV+     D   D+WS     L M  G 
Sbjct: 194 DFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGC 253
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+           I ++PPP    P    P     +   L K P  RA+A E+
Sbjct: 254 HPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMEL 307

>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1 Catalytic Domain Apo Form Length = 390

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYD----- 159
           LK  N L+  +G  KL DFG+A Q+    T   +++ +GT  +M PE I+++        
Sbjct: 181 LKPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGK 239
Query: 160 ------CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFID 213
                   +D+WSLG     M  GK P+  I    +       P      PD+   +  D
Sbjct: 240 SKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQD 299
Query: 214 FVSRCLVKNPEERATASEMLNHEFIQ 239
            +  CL ++P++R +  E+L H ++Q
Sbjct: 300 VLKCCLKRDPKQRISIPELLAHPYVQ 325

>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With Atp Length = 342

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYD----- 159
           LK  N L+  +G  KL DFG+A Q+    T   +++ +GT  +M PE I+++        
Sbjct: 181 LKPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGK 239
Query: 160 ------CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFID 213
                   +D+WSLG     M  GK P+  I    +       P      PD+   +  D
Sbjct: 240 SKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQD 299
Query: 214 FVSRCLVKNPEERATASEMLNHEFIQ 239
            +  CL ++P++R +  E+L H ++Q
Sbjct: 300 VLKCCLKRDPKQRISIPELLAHPYVQ 325

>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase (nik) Length = 352

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 94/234 (40%), Gaps = 40/234 (17%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
            SP +V  YG+  +   + I ME    GS+  +++ +   L ED     L   L+GLEYL
Sbjct: 124 SSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIK-QMGCLPEDRALYYLGQALEGLEYL 182
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLA 123
           H RR +H D+KA                                  N+LL+++G  A L 
Sbjct: 183 HTRRILHGDVKAD---------------------------------NVLLSSDGSRAALC 209
Query: 124 DFGVA-----GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           DFG A       L  ++   + + GT   MAPEV+     D   D+WS     L M  G 
Sbjct: 210 DFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGC 269
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            P+           I ++PPP    P    P     +   L K P  RA+A E+
Sbjct: 270 HPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMEL 323

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 84/208 (40%), Gaps = 42/208 (20%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P V+   G   K+T + I+ E+   GS+   +R      +  ++  +L     G
Sbjct: 88  MGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAG 147
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 148 MKYLADMNYVHRD---------------------------------LAARNILVNSNLVC 174
Query: 121 KLADFGVAGQLTDTMAK--RNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-M 174
           K++DFG++  L D  +     + +G      W APE IQ   +   +D+WS GI   E M
Sbjct: 175 KVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVM 234
Query: 175 AEGKPPYGDIHPMRAIFMIPTK---PPP 199
           + G+ PY D+     I  I      PPP
Sbjct: 235 SYGERPYWDMTNQDVINAIEQDYRLPPP 262

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 39/183 (21%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D  ++   + ++     L++VM+Y   G +  ++   +  L ED     + + +  ++ +
Sbjct: 132 DCQWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMARFYIGEMVLAIDSI 191
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H    +HRDIK                                   N+LL+  GH +LAD
Sbjct: 192 HQLHYVHRDIKPD---------------------------------NVLLDVNGHIRLAD 218
Query: 125 FGVAGQLTDTMAKRNTV-IGTPFWMAPEVIQEI-----GYDCVADMWSLGITALEMAEGK 178
           FG   ++ D    +++V +GTP +++PE++Q +      Y    D WSLG+   EM  G+
Sbjct: 219 FGSCLKMNDDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGE 278
Query: 179 PPY 181
            P+
Sbjct: 279 TPF 281

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 85/206 (41%), Gaps = 48/206 (23%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D  ++   + ++     L++VM+Y   G +  ++   +  L ED     + + +  ++ +
Sbjct: 148 DCQWITALHYAFQDENHLYLVMDYYVGGDLLTLLSKFEDKLPEDMARFYIGEMVLAIDSI 207
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H    +HRDIK                                   N+LL+  GH +LAD
Sbjct: 208 HQLHYVHRDIKPD---------------------------------NVLLDVNGHIRLAD 234
Query: 125 FGVAGQLTDTMAKRNTV-IGTPFWMAPEVIQEI-----GYDCVADMWSLGITALEMAEGK 178
           FG   ++ D    +++V +GTP +++PE++Q +      Y    D WSLG+   EM  G+
Sbjct: 235 FGSCLKMNDDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGE 294
Query: 179 PP---------YGDIHPMRAIFMIPT 195
            P         YG I      F  P+
Sbjct: 295 TPFYAESLVETYGKIMNHEERFQFPS 320

>pdb|4DYM|A Chain A, Crystal Structure Of The Acvr1 Kinase Domain In Complex With The Imidazo[1,2-B]pyridazine Inhibitor K00135 Length = 301

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 99/253 (39%), Gaps = 60/253 (23%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR 67
           ++     S   +T LW++  Y   GS+ D ++L   TL       I+     GL +LH+ 
Sbjct: 67  FIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL--TTLDTVSCLRIVLSIASGLAHLHI- 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
                +I    G       D                   LK+ NIL+   G   +AD G+
Sbjct: 124 -----EIFGTQGKPAIAHRD-------------------LKSKNILVKKNGQCCIADLGL 159
Query: 128 A---GQLTDTM-AKRNTVIGTPFWMAPEVIQE-IGYDCV-----ADMWSLGITALEMA-- 175
           A    Q T+ +    N  +GT  +MAPEV+ E I  DC       D+W+ G+   E+A  
Sbjct: 160 AVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARR 219
Query: 176 --------EGKPPYGDIHP-------MRAIFMI----PTKPPPSFREPDVWTPEFIDFVS 216
                   + KPP+ D+ P       MR +  +    P  P   F +P +        + 
Sbjct: 220 MVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTL--TSLAKLMK 277
Query: 217 RCLVKNPEERATA 229
            C  +NP  R TA
Sbjct: 278 ECWYQNPSARLTA 290

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 95/231 (41%), Gaps = 42/231 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D+PY+V+  G   +   L +VME  G G +   +  +++ +    +A +L     G
Sbjct: 390 MHQLDNPYIVRLIG-VCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMG 448
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL  +  +HR+                                 L A N+LL    +A
Sbjct: 449 MKYLEEKNFVHRN---------------------------------LAARNVLLVNRHYA 475
Query: 121 KLADFGVAGQL--TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L   D+     +    P  W APE I    +   +D+WS G+T  E ++ 
Sbjct: 476 KISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSY 535
Query: 177 GKPPYGDIH-PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
           G+ PY  +  P    F+   K       P    PE    +S C +   E+R
Sbjct: 536 GQKPYKKMKGPEVMAFIEQGK---RMECPPECPPELYALMSDCWIYKWEDR 583

>pdb|3MTF|A Chain A, Crystal Structure Of The Acvr1 Kinase In Complex With A 2- Aminopyridine Inhibitor Length = 301

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 99/253 (39%), Gaps = 60/253 (23%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR 67
           ++     S   +T LW++  Y   GS+ D ++L   TL       I+     GL +LH+ 
Sbjct: 67  FIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL--TTLDTVSCLRIVLSIASGLAHLHI- 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
                +I    G       D                   LK+ NIL+   G   +AD G+
Sbjct: 124 -----EIFGTQGKPAIAHRD-------------------LKSKNILVKKNGQCCIADLGL 159
Query: 128 A---GQLTDTM-AKRNTVIGTPFWMAPEVIQE-IGYDCV-----ADMWSLGITALEMA-- 175
           A    Q T+ +    N  +GT  +MAPEV+ E I  DC       D+W+ G+   E+A  
Sbjct: 160 AVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARR 219
Query: 176 --------EGKPPYGDIHP-------MRAIFMI----PTKPPPSFREPDVWTPEFIDFVS 216
                   + KPP+ D+ P       MR +  +    P  P   F +P +        + 
Sbjct: 220 MVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTL--TSLAKLMK 277
Query: 217 RCLVKNPEERATA 229
            C  +NP  R TA
Sbjct: 278 ECWYQNPSARLTA 290

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 43/232 (18%)
Query: 4   CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEY 63
            + P +VK +        L++V EY   G V D +    +   E E        +  ++Y
Sbjct: 70  LNHPNIVKLFEVIETEKTLYLVXEYASGGEVFDYLVAHGRX-KEKEARAKFRQIVSAVQY 128
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
            H +  +HRD                                 LKA N+LL+ + + K+A
Sbjct: 129 CHQKFIVHRD---------------------------------LKAENLLLDADXNIKIA 155
Query: 124 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYG 182
           DFG + + T    K +   G P + APE+ Q   YD    D+WSLG+    +  G  P+ 
Sbjct: 156 DFGFSNEFT-FGNKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFD 214
Query: 183 --DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             ++  +R   +        +R P   + +  + + + L+ NP +R T  ++
Sbjct: 215 GQNLKELRERVL-----RGKYRIPFYXSTDCENLLKKFLILNPSKRGTLEQI 261

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 72  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 131
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 132 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 158
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 159 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 209

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 71  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 130
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 131 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 157
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 158 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 208

>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (Ttk) In Complex With A Pyrimido-Diazepin Ligand Length = 313

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 102/250 (40%), Gaps = 49/250 (19%)
Query: 3   QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLE 62
           Q  S  +++ Y     +  +++VME CG   ++  ++ +KK++   E  +   + L+ + 
Sbjct: 84  QQHSDKIIRLYDYEITDQYIYMVME-CGNIDLNSWLK-KKKSIDPWERKSYWKNMLEAVH 141
Query: 63  YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKL 122
            +H    +H D                                 LK  N L+  +G  KL
Sbjct: 142 TIHQHGIVHSD---------------------------------LKPANFLI-VDGMLKL 167
Query: 123 ADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYD-----------CVADMWSLGI 169
            DFG+A Q+        +++ +GT  +M PE I+++                +D+WSLG 
Sbjct: 168 IDFGIANQMQPDXXXVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGC 227
Query: 170 TALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA 229
               M  GK P+  I    +       P      PD+   +  D +  CL ++P++R + 
Sbjct: 228 ILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISI 287
Query: 230 SEMLNHEFIQ 239
            E+L H ++Q
Sbjct: 288 PELLAHPYVQ 297

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 73  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 132
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 133 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 159
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 160 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 210

>pdb|3H9R|A Chain A, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 330

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 99/253 (39%), Gaps = 60/253 (23%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR 67
           ++     S   +T LW++  Y   GS+ D ++L   TL       I+     GL +LH+ 
Sbjct: 96  FIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL--TTLDTVSCLRIVLSIASGLAHLHI- 152
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
                +I    G       D                   LK+ NIL+   G   +AD G+
Sbjct: 153 -----EIFGTQGKPAIAHRD-------------------LKSKNILVKKNGQCCIADLGL 188
Query: 128 A---GQLTDTM-AKRNTVIGTPFWMAPEVIQE-IGYDCV-----ADMWSLGITALEMA-- 175
           A    Q T+ +    N  +GT  +MAPEV+ E I  DC       D+W+ G+   E+A  
Sbjct: 189 AVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARR 248
Query: 176 --------EGKPPYGDIHP-------MRAIFMI----PTKPPPSFREPDVWTPEFIDFVS 216
                   + KPP+ D+ P       MR +  +    P  P   F +P +        + 
Sbjct: 249 MVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRWFSDPTL--TSLAKLMK 306
Query: 217 RCLVKNPEERATA 229
            C  +NP  R TA
Sbjct: 307 ECWYQNPSARLTA 319

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 104 IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 163
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 164 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 190
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 191 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 241

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 104/266 (39%), Gaps = 70/266 (26%)
Query: 1   MQQCDSPYVVKYYGSYF-------------KNTDLWIVMEYCGAGSVSDIMRLRKKTLSE 47
           +   +  YVV+YY ++              K + L+I MEYC  G++ D++         
Sbjct: 56  LASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQR 115
Query: 48  DEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRL 107
           DE   +    L+ L Y+H +  IHRD                                 L
Sbjct: 116 DEYWRLFRQILEALSYIHSQGIIHRD---------------------------------L 142
Query: 108 KAGNILLNTEGHAKLADFGVAGQLTDTM--------------AKRNTVIGTPFWMAPEVI 153
           K  NI ++   + K+ DFG+A  +  ++                  + IGT  ++A EV+
Sbjct: 143 KPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVL 202
Query: 154 QEIG-YDCVADMWSLGITALEMAEGKPPYGD----IHPMRAIFMIPTKPPPSFREPDVWT 208
              G Y+   DM+SLGI   EM     P+      ++ ++ +  +  + PP F +  +  
Sbjct: 203 DGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERVNILKKLRSVSIEFPPDFDDNKMKV 259
Query: 209 PEFIDFVSRCLVKNPEERATASEMLN 234
            + I  +   +  +P +R  A  +LN
Sbjct: 260 EKKI--IRLLIDHDPNKRPGARTLLN 283

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 77  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 136
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 137 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 163
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 164 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 214

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 79  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 138
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 139 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 165
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 166 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 216

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 94/236 (39%), Gaps = 45/236 (19%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +++ Y  +     +++++E+   G +   ++ +     E   AT + +    L Y H 
Sbjct: 75  PNILRMYNYFHDRKRIYLMLEFAPRGELYKELQ-KHGRFDEQRSATFMEELADALHYCHE 133
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ IHRDIK                                   N+L+  +G  K+ADFG
Sbjct: 134 RKVIHRDIKPE---------------------------------NLLMGYKGELKIADFG 160
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY---GD 183
            +  +     +R  + GT  ++ PE+I+   +D   D+W  G+   E   G PP+     
Sbjct: 161 WS--VHAPSLRRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSH 218
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
               R I  +  K PP   +         D +S+ L  +P +R     ++ H +++
Sbjct: 219 TETHRRIVNVDLKFPPFLSDGSK------DLISKLLRYHPPQRLPLKGVMEHPWVK 268

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 73  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 132
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 133 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 159
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 160 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 210

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 80  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 139
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 140 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 166
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 167 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 217

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 76  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 135
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 136 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 162
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 163 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 213

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 91  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 150
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 151 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 177
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 178 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 228

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 78  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 137
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 138 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 164
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 165 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 215

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 23/213 (10%)
Query: 36  DIMRLRKKTLSEDEIATILCDTLKGLEYLH--LRRKIHRDIKAGSG-TLVYDRLDYCSIK 92
           +I+RL   ++ E+    ++ D + G E     + R+ + +  A      + + + YC   
Sbjct: 66  NIVRLHD-SIQEESFHYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN 124
Query: 93  CNVITNQIYKTLFRLKAGNILLNTEGHA---KLADFGVAGQLTDTMAKRNTVIGTPFWMA 149
             V  N        LK  N+LL ++      KLADFG+A ++ D+ A  +   GTP +++
Sbjct: 125 GIVHRN--------LKPENLLLASKAKGAAVKLADFGLAIEVNDSEA-WHGFAGTPGYLS 175
Query: 150 PEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK----PPPSFREPD 205
           PEV+++  Y    D+W+ G+    +  G PP+ D    R    I       P P   E D
Sbjct: 176 PEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSP---EWD 232
Query: 206 VWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
             TPE    +   L  NP++R TA + L   +I
Sbjct: 233 TVTPEAKSLIDSMLTVNPKKRITADQALKVPWI 265

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D MA   
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMAG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -FVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 96  NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 146
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D MA   
Sbjct: 147 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMA--- 176
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 177 GFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 236
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 237 TPGAELLKKISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 296
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 297 QALAHAYFAQYHDPD 311

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 107 LKAGNILLNTEGHA---KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD 163
           LK  N+LL ++      KLADFG+A ++ D+ A  +   GTP +++PEV+++  Y    D
Sbjct: 130 LKPENLLLASKAKGAAVKLADFGLAIEVNDSEA-WHGFAGTPGYLSPEVLKKDPYSKPVD 188
Query: 164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK----PPPSFREPDVWTPEFIDFVSRCL 219
           +W+ G+    +  G PP+ D    R    I       P P   E D  TPE    +   L
Sbjct: 189 IWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSP---EWDTVTPEAKSLIDSML 245
Query: 220 VKNPEERATASEMLNHEFI 238
             NP++R TA + L   +I
Sbjct: 246 TVNPKKRITADQALKVPWI 264

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 95/225 (42%), Gaps = 36/225 (16%)
Query: 16  YFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK 75
           Y   T  ++VM+    G + D + L +   +E + + ++   L  ++YLH    +HRD+K
Sbjct: 75  YESTTHYYLVMQLVSGGELFDRI-LERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLK 133
Query: 76  AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM 135
                   + L Y + + N                 I++   G +K+   G+        
Sbjct: 134 P-------ENLLYLTPEEN---------------SKIMITDFGLSKMEQNGIM------- 164
Query: 136 AKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT 195
              +T  GTP ++APEV+ +  Y    D WS+G+    +  G PP+ +      +F    
Sbjct: 165 ---STACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYE-ETESKLFEKIK 220
Query: 196 KPPPSFREP--DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           +    F  P  D  +    DF+   L K+P ER T  + L+H +I
Sbjct: 221 EGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWI 265

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 11/139 (7%)
Query: 107 LKAGNILLNTEGHA---KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD 163
           LK  N+LL ++      KLADFG+A ++ D+ A  +   GTP +++PEV+++  Y    D
Sbjct: 131 LKPENLLLASKAKGAAVKLADFGLAIEVNDSEA-WHGFAGTPGYLSPEVLKKDPYSKPVD 189
Query: 164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK----PPPSFREPDVWTPEFIDFVSRCL 219
           +W+ G+    +  G PP+ D    R    I       P P   E D  TPE    +   L
Sbjct: 190 IWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSP---EWDTVTPEAKSLIDSML 246
Query: 220 VKNPEERATASEMLNHEFI 238
             NP++R TA + L   +I
Sbjct: 247 TVNPKKRITADQALKVPWI 265

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D MA   
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMA--- 180
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 181 GFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 91  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 150
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 151 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 177
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 178 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 228

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 93/236 (39%), Gaps = 45/236 (19%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +++ Y  +     +++++E+   G +   ++ +     E   AT + +    L Y H 
Sbjct: 74  PNILRMYNYFHDRKRIYLMLEFAPRGELYKELQ-KHGRFDEQRSATFMEELADALHYCHE 132
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ IHRDIK                                   N+L+  +G  K+ADFG
Sbjct: 133 RKVIHRDIKPE---------------------------------NLLMGYKGELKIADFG 159
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY---GD 183
            +        +R  + GT  ++ PE+I+   +D   D+W  G+   E   G PP+     
Sbjct: 160 WSVHAPSL--RRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSH 217
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
               R I  +  K PP   +         D +S+ L  +P +R     ++ H +++
Sbjct: 218 TETHRRIVNVDLKFPPFLSDGSK------DLISKLLRYHPPQRLPLKGVMEHPWVK 267

>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a Mutant In Complex With Sp600125 Inhibitor Length = 390

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYD----- 159
           LK  N L+  +G  KL DFG+A Q+    T   +++ +G   +M PE I+++        
Sbjct: 181 LKPANFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGK 239
Query: 160 ------CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFID 213
                   +D+WSLG     M  GK P+  I    +       P      PD+   +  D
Sbjct: 240 SKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQD 299
Query: 214 FVSRCLVKNPEERATASEMLNHEFIQ 239
            +  CL ++P++R +  E+L H ++Q
Sbjct: 300 VLKCCLKRDPKQRISIPELLAHPYVQ 325

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
           L++VM+    G + D + + K   +E + +T++   L  + YLH    +HRD+K  +  L
Sbjct: 95  LYLVMQLVSGGELFDRI-VEKGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPEN--L 151
Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTV 141
           +Y   D                    +   I+++  G +K+   G      D M+   T 
Sbjct: 152 LYYSQD--------------------EESKIMISDFGLSKMEGKG------DVMS---TA 182
Query: 142 IGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSF 201
            GTP ++APEV+ +  Y    D WS+G+ A  +  G PP+ D +  + +F    K    F
Sbjct: 183 CGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDSK-LFEQILKAEYEF 241
Query: 202 REP--DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
             P  D  +    DF+   + K+P +R T  +   H +I
Sbjct: 242 DSPYWDDISDSAKDFIRNLMEKDPNKRYTCEQAARHPWI 280

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 107 LKAGNILLNTEGHA---KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD 163
           LK  N+LL ++      KLADFG+A ++ D+ A  +   GTP +++PEV+++  Y    D
Sbjct: 154 LKPENLLLASKAKGAAVKLADFGLAIEVNDSEA-WHGFAGTPGYLSPEVLKKDPYSKPVD 212
Query: 164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK----PPPSFREPDVWTPEFIDFVSRCL 219
           +W+ G+    +  G PP+ D    R    I       P P   E D  TPE    +   L
Sbjct: 213 IWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSP---EWDTVTPEAKSLIDSML 269
Query: 220 VKNPEERATASEML 233
             NP++R TA + L
Sbjct: 270 TVNPKKRITADQAL 283

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV EY   GS+   +R      +  ++  +L     G
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 159
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 160 MKYLSDMGYVHRD---------------------------------LAARNILINSNLVC 186
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG+A  L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 187 KVSDFGLARVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 246
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY ++     I  +      PPP
Sbjct: 247 GERPYWEMSNQDVIKAVDEGYRLPPP 272

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 102 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 152
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 153 ---------------------------LKPSNLAVNEDSELKILDFGLARHTDDEMTG-- 183
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 184 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 242
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 243 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 302
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 303 QALAHAYFAQYHDPD 317

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 106 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 156
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 157 ---------------------------LKPSNLAVNEDSELKILDFGLARHTDDEMTG-- 187
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 188 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 246
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 247 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 306
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 307 QALAHAYFAQYHDPD 321

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE+ +  + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNAMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 73  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 132
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 133 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 159
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 160 LTKVLPQD--KEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 210

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKXQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDXELKILDFGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 96/234 (41%), Gaps = 40/234 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P+++K Y       ++ +V+EY G   + D +  R K +SE E        +  +EY H 
Sbjct: 74  PHIIKLYDVIKSKDEIIMVIEYAG-NELFDYIVQRDK-MSEQEARRFFQQIISAVEYCHR 131
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
            + +HRD                                 LK  N+LL+   + K+ADFG
Sbjct: 132 HKIVHRD---------------------------------LKPENLLLDEHLNVKIADFG 158
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGDIH 185
           ++  +TD    + T  G+P + APEVI    Y     D+WS G+    M   + P+ D  
Sbjct: 159 LSNIMTDGNFLK-TSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD-E 216
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
            +  +F         +  P   +P     + R L+ NP  R +  E++  ++ +
Sbjct: 217 SIPVLF--KNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFK 268

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 96/234 (41%), Gaps = 40/234 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P+++K Y       ++ +V+EY G   + D +  R K +SE E        +  +EY H 
Sbjct: 64  PHIIKLYDVIKSKDEIIMVIEYAG-NELFDYIVQRDK-MSEQEARRFFQQIISAVEYCHR 121
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
            + +HRD                                 LK  N+LL+   + K+ADFG
Sbjct: 122 HKIVHRD---------------------------------LKPENLLLDEHLNVKIADFG 148
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGDIH 185
           ++  +TD    + T  G+P + APEVI    Y     D+WS G+    M   + P+ D  
Sbjct: 149 LSNIMTDGNFLK-TSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD-E 206
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
            +  +F         +  P   +P     + R L+ NP  R +  E++  ++ +
Sbjct: 207 SIPVLF--KNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFK 258

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 96/234 (41%), Gaps = 40/234 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P+++K Y       ++ +V+EY G   + D +  R K +SE E        +  +EY H 
Sbjct: 73  PHIIKLYDVIKSKDEIIMVIEYAG-NELFDYIVQRDK-MSEQEARRFFQQIISAVEYCHR 130
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
            + +HRD                                 LK  N+LL+   + K+ADFG
Sbjct: 131 HKIVHRD---------------------------------LKPENLLLDEHLNVKIADFG 157
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGDIH 185
           ++  +TD    + T  G+P + APEVI    Y     D+WS G+    M   + P+ D  
Sbjct: 158 LSNIMTDGNFLK-TSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD-E 215
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
            +  +F         +  P   +P     + R L+ NP  R +  E++  ++ +
Sbjct: 216 SIPVLF--KNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFK 267

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 96/234 (41%), Gaps = 40/234 (17%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P+++K Y       ++ +V+EY G   + D +  R K +SE E        +  +EY H 
Sbjct: 68  PHIIKLYDVIKSKDEIIMVIEYAG-NELFDYIVQRDK-MSEQEARRFFQQIISAVEYCHR 125
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
            + +HRD                                 LK  N+LL+   + K+ADFG
Sbjct: 126 HKIVHRD---------------------------------LKPENLLLDEHLNVKIADFG 152
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADMWSLGITALEMAEGKPPYGDIH 185
           ++  +TD    + T  G+P + APEVI    Y     D+WS G+    M   + P+ D  
Sbjct: 153 LSNIMTDGNFLK-TSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD-E 210
Query: 186 PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
            +  +F         +  P   +P     + R L+ NP  R +  E++  ++ +
Sbjct: 211 SIPVLF--KNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFK 262

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 42/208 (20%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P V+   G   K+T + I+ E+   GS+   +R      +  ++  +L     G
Sbjct: 62  MGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAG 121
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HR                                  L A NIL+N+    
Sbjct: 122 MKYLADMNYVHR---------------------------------ALAARNILVNSNLVC 148
Query: 121 KLADFGVAGQLTDTMA--KRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-M 174
           K++DFG++  L D  +     + +G      W APE IQ   +   +D+WS GI   E M
Sbjct: 149 KVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVM 208
Query: 175 AEGKPPYGDIHPMRAIFMIPTK---PPP 199
           + G+ PY D+     I  I      PPP
Sbjct: 209 SYGERPYWDMTNQDVINAIEQDYRLPPP 236

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 111 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 161
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 162 ---------------------------LKPSNLAVNEDXELKILDFGLARHTDDEMT--- 191
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 192 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 251
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 252 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 311
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 312 QALAHAYFAQYHDPD 326

>pdb|1NXK|A Chain A, Crystal Structure Of Staurosporine Bound To Map Kap Kinase 2 Length = 400

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 98/256 (38%), Gaps = 49/256 (19%)
Query: 3   QCDSPYVVK----YYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDT 57
           QC  P++V+    Y   Y     L IV E    G + S I     +  +E E + I    
Sbjct: 113 QC--PHIVRIVDVYENLYAGRKCLLIVXECLDGGELFSRIQDRGDQAFTEREASEIXKSI 170
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
            + ++YLH     HRD+K        + L Y S + N I                     
Sbjct: 171 GEAIQYLHSINIAHRDVKP-------ENLLYTSKRPNAI--------------------- 202
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              KL DFG A + T +     T   TP+++APEV+    YD   D WSLG+    +  G
Sbjct: 203 --LKLTDFGFAKE-TTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDXWSLGVIXYILLCG 259
Query: 178 KPPYGDIHPMRAIFMIPTK--------PPPSFREPDVWTPEFIDFVSRCLVKNPEERATA 229
            PP+   H +       T+        P P + E    + E    +   L   P +R T 
Sbjct: 260 YPPFYSNHGLAISPGXKTRIRXGQYEFPNPEWSEV---SEEVKXLIRNLLKTEPTQRXTI 316
Query: 230 SEMLNHEFIQRHDTDP 245
           +E  NH +I +    P
Sbjct: 317 TEFXNHPWIXQSTKVP 332

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 105 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 155
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 156 ---------------------------LKPSNLAVNEDXELKILDFGLARHTDDEMTG-- 186
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 187 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 245
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 246 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 305
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 306 QALAHAYFAQYHDPD 320

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 107/258 (41%), Gaps = 75/258 (29%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           +++++V    GA  +++I  ++ + LS++ +  ++   L+GL+Y+H    IHRD      
Sbjct: 106 SEVYLVTTLMGA-DLNNI--VKSQALSDEHVQFLVYQLLRGLKYIHSAGIIHRD------ 156
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   ++ DFG+A Q  + M    
Sbjct: 157 ---------------------------LKPSNVAVNEDSELRILDFGLARQADEEM---T 186
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+ +GK   P    I  ++ I  +  
Sbjct: 187 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKALFPGSDYIDQLKRIMEVVG 246
Query: 196 KPPPS----------------------------FREPDVWTPEFIDFVSRCLVKNPEERA 227
            P P                             FR  +   P  ID + R LV + ++R 
Sbjct: 247 TPSPEVLAKISSEHARTYIQSLPPMPQKDLSSIFRGAN---PLAIDLLGRMLVLDSDQRV 303
Query: 228 TASEMLNHE-FIQRHDTD 244
           +A+E L H  F Q HD +
Sbjct: 304 SAAEALAHAYFSQYHDPE 321

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 105 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 155
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 156 ---------------------------LKPSNLAVNEDXELKILDFGLARHTDDEMTG-- 186
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 187 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 245
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 246 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 305
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 306 QALAHAYFAQYHDPD 320

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++   + +   ++        KG+EYL  
Sbjct: 76  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQAHAERIDHIKLLQYTSQICKGMEYLGT 135
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 136 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 162
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 163 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 213

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 34/234 (14%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P ++K    +   T++ +V+E    G + D + + K   SE + A  +   L+ + YLH 
Sbjct: 108 PNIIKLKEIFETPTEISLVLELVTGGELFDRI-VEKGYYSERDAADAVKQILEAVAYLHE 166
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              +HRD+K                      N +Y T             +   K+ADFG
Sbjct: 167 NGIVHRDLKP--------------------ENLLYATP----------APDAPLKIADFG 196
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHP 186
           ++ ++ +      TV GTP + APE+++   Y    DMWS+GI    +  G  P+ D   
Sbjct: 197 LS-KIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERG 255
Query: 187 MRAIFMIPTKPPPSFREP--DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
            + +F         F  P  D  +    D V + +V +P++R T  + L H ++
Sbjct: 256 DQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWV 309

>pdb|3FHR|A Chain A, High Resolution Crystal Structure Of Mitogen-Activated Protein Kinase-Activated Protein Kinase 3 (Mk3)-Inhibitor Complex Length = 336

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 96/229 (41%), Gaps = 46/229 (20%)
Query: 22  LWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           L I+ME    G + S I     +  +E E A I+ D    +++LH     HRD+K     
Sbjct: 101 LLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKP---- 156
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
              + L Y S + + +                        KL DFG A + T    +  T
Sbjct: 157 ---ENLLYTSKEKDAVL-----------------------KLTDFGFAKETTQNALQ--T 188
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY-----GDIHP-MRAIFMIP 194
              TP+++APEV+    YD   DMWSLG+    +  G PP+       I P M+    + 
Sbjct: 189 PCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLG 248
Query: 195 TK--PPPSFREPDVWTPEFIDFVSRCLVK-NPEERATASEMLNHEFIQR 240
               P P + E      + I    R L+K +P ER T ++ +NH +I +
Sbjct: 249 QYGFPNPEWSEVSEDAKQLI----RLLLKTDPTERLTITQFMNHPWINQ 293

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 107 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 157
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 158 ---------------------------LKPSNLAVNEDCELKILDFGLARHTADEMTG-- 188
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 189 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 247
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 248 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 307
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 308 QALAHAYFAQYHDPD 322

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 107 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 157
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 158 ---------------------------LKPSNLAVNEDCELKILDFGLARHTADEMTG-- 188
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 189 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 247
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 248 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 307
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 308 QALAHAYFAQYHDPD 322

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 107 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 157
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 158 ---------------------------LKPSNLAVNEDCELKILDFGLARHTADEMTG-- 188
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 189 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 247
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 248 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 307
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 308 QALAHAYFAQYHDPD 322

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV EY   GS+   +R      +  ++  +L     G
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 159
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 160 MKYLSDMGYVHRD---------------------------------LAARNILINSNLVC 186
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 246
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY ++     I  +      PPP
Sbjct: 247 GERPYWEMSNQDVIKAVDEGYRLPPP 272

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 41/226 (18%)
Query: 16  YFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK 75
           Y     L IV ++C   S+   +   +      ++  I   T +G++YLH +  IHRD  
Sbjct: 88  YSTKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRD-- 145
Query: 76  AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM 135
                                          LK+ NI L+ +   K+ DFG+A + +   
Sbjct: 146 -------------------------------LKSNNIFLHEDNTVKIGDFGLATEKSRWS 174
Query: 136 AKRN--TVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAI 190
                  + G+  WMAPEVI+      Y   +D+++ GI   E+  G+ PY +I+    I
Sbjct: 175 GSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQI 234
Query: 191 FMIPTKP--PPSFREPDVWTPEFID-FVSRCLVKNPEERATASEML 233
             +  +    P   +     P+ +   ++ CL K  +ER +   +L
Sbjct: 235 IEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRIL 280

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV EY   GS+   +R      +  ++  +L     G
Sbjct: 98  MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 157
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 158 MKYLSDMGYVHRD---------------------------------LAARNILINSNLVC 184
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 185 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 244
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY ++     I  +      PPP
Sbjct: 245 GERPYWEMSNQDVIKAVDEGYRLPPP 270

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 96  NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 146
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 147 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 177
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 178 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 236
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 237 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 296
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 297 QALAHAYFAQYHDPD 311

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKXQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|3R1N|A Chain A, Mk3 Kinase Bound To Compound 5b Length = 317

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 44/228 (19%)
Query: 22  LWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           L I+ME    G + S I     +  +E E A I+ D    +++LH     HRD+K     
Sbjct: 82  LLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKP---- 137
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
              + L Y S + + +                        KL DFG A + T    +  T
Sbjct: 138 ---ENLLYTSKEKDAVL-----------------------KLTDFGFAKETTQNALQ--T 169
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY-----GDIHP-MRAIFMIP 194
              TP+++APEV+    YD   DMWSLG+    +  G PP+       I P M+    + 
Sbjct: 170 PCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLG 229
Query: 195 TK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
               P P + E      + I  +   L  +P ER T ++ +NH +I +
Sbjct: 230 QYGFPNPEWSEVSEDAKQLIRLL---LKTDPTERLTITQFMNHPWINQ 274

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -XVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 98  NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 148
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 149 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 179
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 180 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 238
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 239 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 298
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 299 QALAHAYFAQYHDPD 313

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV EY   GS+   +R      +  ++  +L     G
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 159
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 160 MKYLSDMGYVHRD---------------------------------LAARNILINSNLVC 186
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 246
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY ++     I  +      PPP
Sbjct: 247 GERPYWEMSNQDVIKAVDEGYRLPPP 272

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV EY   GS+   +R      +  ++  +L     G
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 159
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 160 MKYLSDMGYVHRD---------------------------------LAARNILINSNLVC 186
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 246
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY ++     I  +      PPP
Sbjct: 247 GERPYWEMSNQDVIKAVDEGYRLPPP 272

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV EY   GS+   +R      +  ++  +L     G
Sbjct: 71  MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 130
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 131 MKYLSDMGYVHRD---------------------------------LAARNILINSNLVC 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 158 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 217
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY ++     I  +      PPP
Sbjct: 218 GERPYWEMSNQDVIKAVDEGYRLPPP 243

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 111 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 161
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 162 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMT--- 191
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 192 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 251
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 252 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 311
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 312 QALAHAYFAQYHDPD 326

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 49/233 (21%)
Query: 13  YGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           +  Y     L IV ++C   S+   + + +      ++  I   T +G++YLH +  IHR
Sbjct: 69  FMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHR 128
Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT 132
           D                                 LK+ NI L+ +   K+ DFG+A + +
Sbjct: 129 D---------------------------------LKSNNIFLHEDLTVKIGDFGLATEKS 155
Query: 133 DTMAKRN--TVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
                     + G+  WMAPEVI+   +  Y   +D+++ GI   E+  G+ PY +I+  
Sbjct: 156 RWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR 215
Query: 188 -RAIFMIPTKPPPSFREPDVWT-----PEFID-FVSRCLVKNPEERATASEML 233
            + IFM+       +  PD+       P+ +   ++ CL K  +ER    ++L
Sbjct: 216 DQIIFMVGR----GYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 264

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 123 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 173
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 174 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMXG-- 204
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 205 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 263
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 264 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 323
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 324 QALAHAYFAQYHDPD 338

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 96  NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 146
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 147 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 177
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 178 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 236
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 237 TPGAELLKKISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 296
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 297 QALAHAYFAQYHDPD 311

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 97  NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 147
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 148 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 178
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 179 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 237
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 238 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 297
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 298 QALAHAYFAQYHDPD 312

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV EY   GS+   +R      +  ++  +L     G
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 159
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 160 MKYLSDMGYVHRD---------------------------------LAARNILINSNLVC 186
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 246
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY ++     I  +      PPP
Sbjct: 247 GERPYWEMSNQDVIKAVDEGYRLPPP 272

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 102 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 152
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 153 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 183
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 184 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 242
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 243 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 302
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 303 QALAHAYFAQYHDPD 317

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 105 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 155
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 156 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 186
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 187 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 245
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 246 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 305
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 306 QALAHAYFAQYHDPD 320

>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With Compound A Length = 356

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 79/199 (39%), Gaps = 37/199 (18%)
Query: 40  LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQ 99
           L K  L+ + +        KG+E+L  R+ IHRD                          
Sbjct: 183 LYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRD-------------------------- 216
Query: 100 IYKTLFRLKAGNILLNTEGHAKLADFGVAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIG 157
                  L A NILL+ +   K+ DFG+A  +  D    R      P  WMAPE I +  
Sbjct: 217 -------LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV 269
Query: 158 YDCVADMWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVS 216
           Y   +D+WS G+   E+ + G  PY  +  +   F    K     R PD  TPE    + 
Sbjct: 270 YTIQSDVWSFGVLLWEIFSLGASPYPGVK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTML 328
Query: 217 RCLVKNPEERATASEMLNH 235
            C    P +R T SE++ H
Sbjct: 329 DCWHGEPSQRPTFSELVEH 347

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 112 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 162
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 163 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 193
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 194 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 252
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 253 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 312
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 313 QALAHAYFAQYHDPD 327

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 99  NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 149
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 150 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 180
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 181 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 239
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 240 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 299
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 300 QALAHAYFAQYHDPD 314

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 112 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 162
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 163 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 193
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 194 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 252
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 253 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 312
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 313 QALAHAYFAQYHDPD 327

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 120 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 170
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 171 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMT--- 200
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 201 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 260
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 261 TPGAELLKKISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 320
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 321 QALAHAYFAQYHDPD 335

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 49/233 (21%)
Query: 13  YGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           +  Y     L IV ++C   S+   + + +      ++  I   T +G++YLH +  IHR
Sbjct: 89  FMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHR 148
Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT 132
           D                                 LK+ NI L+ +   K+ DFG+A + +
Sbjct: 149 D---------------------------------LKSNNIFLHEDLTVKIGDFGLATEKS 175
Query: 133 DTMAKRN--TVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
                     + G+  WMAPEVI+   +  Y   +D+++ GI   E+  G+ PY +I+  
Sbjct: 176 RWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR 235
Query: 188 -RAIFMIPTKPPPSFREPDVWT-----PEFID-FVSRCLVKNPEERATASEML 233
            + IFM+       +  PD+       P+ +   ++ CL K  +ER    ++L
Sbjct: 236 DQIIFMVGR----GYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 284

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 112 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 162
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 163 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 193
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 194 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 252
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 253 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 312
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 313 QALAHAYFAQYHDPD 327

>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A Novel Pyrrolopyrimidine Inhibitor Length = 359

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 79/199 (39%), Gaps = 37/199 (18%)
Query: 40  LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQ 99
           L K  L+ + +        KG+E+L  R+ IHRD                          
Sbjct: 185 LYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRD-------------------------- 218
Query: 100 IYKTLFRLKAGNILLNTEGHAKLADFGVAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIG 157
                  L A NILL+ +   K+ DFG+A  +  D    R      P  WMAPE I +  
Sbjct: 219 -------LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRV 271
Query: 158 YDCVADMWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVS 216
           Y   +D+WS G+   E+ + G  PY  +  +   F    K     R PD  TPE    + 
Sbjct: 272 YTIQSDVWSFGVLLWEIFSLGASPYPGVK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTML 330
Query: 217 RCLVKNPEERATASEMLNH 235
            C    P +R T SE++ H
Sbjct: 331 DCWHGEPSQRPTFSELVEH 349

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 97  NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 147
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 148 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 178
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 179 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 237
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 238 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 297
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 298 QALAHAYFAQYHDPD 312

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 102 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 152
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 153 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 183
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 184 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 242
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 243 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 302
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 303 QALAHAYFAQYHDPD 317

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 106 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 156
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 157 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 187
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 188 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 246
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 247 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 306
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 307 QALAHAYFAQYHDPD 321

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV EY   GS+   +R      +  ++  +L     G
Sbjct: 88  MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 147
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 148 MKYLSDMGYVHRD---------------------------------LAARNILINSNLVC 174
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 175 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 234
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY ++     I  +      PPP
Sbjct: 235 GERPYWEMSNQDVIKAVDEGYRLPPP 260

>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 2-Anilino-5-Aryl-Oxazole Inhibitor Length = 366

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 73/180 (40%), Gaps = 37/180 (20%)
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           KG+E+L  R+ IHRD                                 L A NILL+ + 
Sbjct: 209 KGMEFLASRKCIHRD---------------------------------LAARNILLSEKN 235
Query: 119 HAKLADFGVAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-A 175
             K+ DFG+A  +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ +
Sbjct: 236 VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS 295
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
            G  PY  +  +   F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 296 LGASPYPGVK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 354

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV EY   GS+   +R      +  ++  +L     G
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 159
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 160 MKYLSDMGFVHRD---------------------------------LAARNILINSNLVC 186
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 246
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY ++     I  +      PPP
Sbjct: 247 GERPYWEMSNQDVIKAVDEGYRLPPP 272

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 110 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 160
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 161 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEM---T 190
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 191 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 250
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 251 TPGAELLKKISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 310
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 311 QALAHAYFAQYHDPD 325

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 123 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 173
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 174 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 204
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 205 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 263
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 264 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 323
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 324 QALAHAYFAQYHDPD 338

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 107 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 157
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 158 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 188
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 189 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 247
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 248 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 307
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 308 QALAHAYFAQYHDPD 322

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 119 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 169
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 170 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 200
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 201 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 259
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 260 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 319
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 320 QALAHAYFAQYHDPD 334

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 120 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 170
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 171 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMX--- 200
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 201 GXVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 260
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 261 TPGAELLKKISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 320
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 321 QALAHAYFAQYHDPD 335

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 45/249 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEIATILCDTLK 59
           +++ +S +VV    +Y     L +V+     G +   I  + +    E        +   
Sbjct: 238 LEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICC 297
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GLE LH  R ++RD                                 LK  NILL+  GH
Sbjct: 298 GLEDLHRERIVYRD---------------------------------LKPENILLDDHGH 324
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            +++D G+A  + +    +  V GT  +MAPEV++   Y    D W+LG    EM  G+ 
Sbjct: 325 IRISDLGLAVHVPEGQTIKGRV-GTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQS 383
Query: 180 PYGDIH---PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASE 231
           P+           +  +  + P  + E   ++P+     S+ L K+P ER      +A E
Sbjct: 384 PFQQRKKKIKREEVERLVKEVPEEYSE--RFSPQARSLCSQLLCKDPAERLGCRGGSARE 441
Query: 232 MLNHEFIQR 240
           +  H   ++
Sbjct: 442 VKEHPLFKK 450

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 105 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 155
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 156 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 186
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 187 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 245
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 246 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 305
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 306 QALAHAYFAQYHDPD 320

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 120 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 170
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 171 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 201
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 202 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 260
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 261 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 320
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 321 QALAHAYFAQYHDPD 335

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV EY   GS+   +R      +  ++  +L     G
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 159
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 160 MKYLSDMGYVHRD---------------------------------LAARNILINSNLVC 186
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG+   L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 187 KVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 246
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY ++     I  +      PPP
Sbjct: 247 GERPYWEMSNQDVIKAVDEGYRLPPP 272

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 106 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 156
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 157 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMT--- 186
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 187 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 246
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 247 TPGAELLKKISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 306
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 307 QALAHAYFAQYHDPD 321

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 119 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 169
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 170 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMT--- 199
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 200 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 259
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 260 TPGAELLKKISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 319
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 320 QALAHAYFAQYHDPD 334

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 45/249 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVS-DIMRLRKKTLSEDEIATILCDTLK 59
           +++ +S +VV    +Y     L +V+     G +   I  + +    E        +   
Sbjct: 238 LEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICC 297
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GLE LH  R ++RD                                 LK  NILL+  GH
Sbjct: 298 GLEDLHRERIVYRD---------------------------------LKPENILLDDHGH 324
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            +++D G+A  + +    +  V GT  +MAPEV++   Y    D W+LG    EM  G+ 
Sbjct: 325 IRISDLGLAVHVPEGQTIKGRV-GTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQS 383
Query: 180 PYGDIH---PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASE 231
           P+           +  +  + P  + E   ++P+     S+ L K+P ER      +A E
Sbjct: 384 PFQQRKKKIKREEVERLVKEVPEEYSE--RFSPQARSLCSQLLCKDPAERLGCRGGSARE 441
Query: 232 MLNHEFIQR 240
           +  H   ++
Sbjct: 442 VKEHPLFKK 450

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 49/233 (21%)
Query: 13  YGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           +  Y     L IV ++C   S+   + + +      ++  I   T +G++YLH +  IHR
Sbjct: 97  FMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHR 156
Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT 132
           D                                 LK+ NI L+ +   K+ DFG+A + +
Sbjct: 157 D---------------------------------LKSNNIFLHEDLTVKIGDFGLATEKS 183
Query: 133 DTMAKRN--TVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
                     + G+  WMAPEVI+   +  Y   +D+++ GI   E+  G+ PY +I+  
Sbjct: 184 RWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR 243
Query: 188 -RAIFMIPTKPPPSFREPDVWT-----PEFID-FVSRCLVKNPEERATASEML 233
            + IFM+       +  PD+       P+ +   ++ CL K  +ER    ++L
Sbjct: 244 DQIIFMVGR----GYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 292

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 102 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 152
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 153 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 183
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 184 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 242
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 243 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 302
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 303 QALAHAYFAQYHDPD 317

>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Back Pocket Binder Length = 368

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 73/180 (40%), Gaps = 37/180 (20%)
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           KG+E+L  R+ IHRD                                 L A NILL+ + 
Sbjct: 211 KGMEFLASRKCIHRD---------------------------------LAARNILLSEKN 237
Query: 119 HAKLADFGVAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-A 175
             K+ DFG+A  +  D    R      P  WMAPE I +  Y   +D+WS G+   E+ +
Sbjct: 238 VVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS 297
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
            G  PY  +  +   F    K     R PD  TPE    +  C    P +R T SE++ H
Sbjct: 298 LGASPYPGVK-IDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 356

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 106 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 156
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 157 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEMTG-- 187
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 188 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 246
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 247 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 306
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 307 QALAHAYFAQYHDPD 321

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 43/225 (19%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           L+IV EY   GS+ D +R R ++ L  D +     D  + +EYL     +HRD       
Sbjct: 262 LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRD------- 314
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L A N+L++ +  AK++DFG+  + + T      
Sbjct: 315 --------------------------LAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL 348
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAIFMIP-TKPP 198
            +    W APE ++E  +   +D+WS GI   E+ + G+ PY  I P++ +  +P  +  
Sbjct: 349 PVK---WTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI-PLKDV--VPRVEKG 402
Query: 199 PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH-EFIQRHD 242
                PD   P   D +  C   +   R T  ++    E I+ H+
Sbjct: 403 YKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTHE 447

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 41/229 (17%)
Query: 13  YGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           +  Y     L IV ++C   S+   +   +      ++  I   T +G++YLH +  IHR
Sbjct: 85  FMGYSTAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHR 144
Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT 132
           D                                 LK+ NI L+ +   K+ DFG+A + +
Sbjct: 145 D---------------------------------LKSNNIFLHEDNTVKIGDFGLATEKS 171
Query: 133 DTMAKRN--TVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
                     + G+  WMAPEVI+      Y   +D+++ GI   E+  G+ PY +I+  
Sbjct: 172 RWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR 231
Query: 188 RAIFMIPTKP--PPSFREPDVWTPEFID-FVSRCLVKNPEERATASEML 233
             I  +  +    P   +     P+ +   ++ CL K  +ER +   +L
Sbjct: 232 DQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRIL 280

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 107/258 (41%), Gaps = 75/258 (29%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           +++++V    GA  +++I++   + LS++ +  ++   L+GL+Y+H    IHRD      
Sbjct: 106 SEVYLVTTLMGA-DLNNIVKC--QALSDEHVQFLVYQLLRGLKYIHSAGIIHRD------ 156
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   ++ DFG+A Q  + M    
Sbjct: 157 ---------------------------LKPSNVAVNEDSELRILDFGLARQADEEM---T 186
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+ +GK   P    I  ++ I  +  
Sbjct: 187 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKALFPGSDYIDQLKRIMEVVG 246
Query: 196 KPPPS----------------------------FREPDVWTPEFIDFVSRCLVKNPEERA 227
            P P                             FR  +   P  ID + R LV + ++R 
Sbjct: 247 TPSPEVLAKISSEHARTYIQSLPPMPQKDLSSIFRGAN---PLAIDLLGRMLVLDSDQRV 303
Query: 228 TASEMLNHE-FIQRHDTD 244
           +A+E L H  F Q HD +
Sbjct: 304 SAAEALAHAYFSQYHDPE 321

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++MEY   GS+ D ++  K+ +   ++        KG+EYL  
Sbjct: 74  IVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGT 133
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHR+                                 L   NIL+  E   K+ DFG
Sbjct: 134 KRYIHRN---------------------------------LATRNILVENENRVKIGDFG 160
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 161 LTKVLPQD--KEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 211

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 49/229 (21%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D P++V    ++     L  +++    G +   +  +    SE ++     + + GLE++
Sbjct: 250 DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS-QHGVFSEADMRFYAAEIILGLEHM 308
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H R  ++RD                                 LK  NILL+  GH +++D
Sbjct: 309 HNRFVVYRD---------------------------------LKPANILLDEHGHVRISD 335
Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPY-- 181
            G+A   +    K +  +GT  +MAPEV+Q+ + YD  AD +SLG    ++  G  P+  
Sbjct: 336 LGLACDFSKK--KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQ 393
Query: 182 ---GDIHPM-RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
               D H + R    +  + P SF      +PE    +   L ++   R
Sbjct: 394 HKTKDKHEIDRMTLTMAVELPDSF------SPELRSLLEGLLQRDVNRR 436

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 45/236 (19%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +++ Y  ++    +++++EY   G +   ++ +  T  E   ATI+ +    L Y H 
Sbjct: 83  PNILRLYNYFYDRRRIYLILEYAPRGELYKELQ-KSCTFDEQRTATIMEELADALMYCHG 141
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           ++ IHRDIK                                   N+LL  +G  K+ADFG
Sbjct: 142 KKVIHRDIKPE---------------------------------NLLLGLKGELKIADFG 168
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDI-- 184
            +        +R T+ GT  ++ PE+I+   ++   D+W +G+   E+  G PP+     
Sbjct: 169 WSVHAPSL--RRKTMCGTLDYLPPEMIEGRMHNEKVDLWCIGVLCYELLVGNPPFESASH 226
Query: 185 -HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
               R I  +  K P S            D +S+ L  NP ER   +++  H +++
Sbjct: 227 NETYRRIVKVDLKFPASV------PTGAQDLISKLLRHNPSERLPLAQVSAHPWVR 276

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 49/229 (21%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D P++V    ++     L  +++    G +   +  +    SE ++     + + GLE++
Sbjct: 249 DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS-QHGVFSEADMRFYAAEIILGLEHM 307
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H R  ++RD                                 LK  NILL+  GH +++D
Sbjct: 308 HNRFVVYRD---------------------------------LKPANILLDEHGHVRISD 334
Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPY-- 181
            G+A   +    K +  +GT  +MAPEV+Q+ + YD  AD +SLG    ++  G  P+  
Sbjct: 335 LGLACDFSKK--KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQ 392
Query: 182 ---GDIHPM-RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
               D H + R    +  + P SF      +PE    +   L ++   R
Sbjct: 393 HKTKDKHEIDRMTLTMAVELPDSF------SPELRSLLEGLLQRDVNRR 435

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 35/161 (21%)
Query: 23  WIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV 82
           ++VMEY    ++S+ +      LS D         L G+++ H  R +HRDIK       
Sbjct: 87  YLVMEYIEGPTLSEYIE-SHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQ----- 140
Query: 83  YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT-MAKRNTV 141
                                       NIL+++    K+ DFG+A  L++T + + N V
Sbjct: 141 ----------------------------NILIDSNKTLKIFDFGIAKALSETSLTQTNHV 172
Query: 142 IGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYG 182
           +GT  + +PE  +    D   D++S+GI   EM  G+PP+ 
Sbjct: 173 LGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFN 213

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 79/206 (38%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P ++   G   K   + I+ EY   GS+   +R      +  ++  +L     G
Sbjct: 84  MGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSG 143
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 144 MKYLSDMSAVHRD---------------------------------LAARNILVNSNLVC 170
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W APE I    +   +D+WS GI   E M+ 
Sbjct: 171 KVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSY 230
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY D+     I  I      PPP
Sbjct: 231 GERPYWDMSNQDVIKAIEEGYRLPPP 256

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 49/229 (21%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D P++V    ++     L  +++    G +   +  +    SE ++     + + GLE++
Sbjct: 250 DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS-QHGVFSEADMRFYAAEIILGLEHM 308
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H R  ++RD                                 LK  NILL+  GH +++D
Sbjct: 309 HNRFVVYRD---------------------------------LKPANILLDEHGHVRISD 335
Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPY-- 181
            G+A   +    K +  +GT  +MAPEV+Q+ + YD  AD +SLG    ++  G  P+  
Sbjct: 336 LGLACDFSKK--KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQ 393
Query: 182 ---GDIHPM-RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
               D H + R    +  + P SF      +PE    +   L ++   R
Sbjct: 394 HKTKDKHEIDRMTLTMAVELPDSF------SPELRSLLEGLLQRDVNRR 436

>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein Kinase Domain Length = 387

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 101/243 (41%), Gaps = 39/243 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q   P ++  + ++    ++ +++E+   G + D +      +SE E+   +    +G
Sbjct: 102 MNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEG 161
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+++H    +H DIK  +            I C              KA ++        
Sbjct: 162 LKHMHEHSIVHLDIKPEN------------IMCET-----------KKASSV-------- 190
Query: 121 KLADFGVAGQLT-DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
           K+ DFG+A +L  D + K  T   T  + APE++         DMW++G+    +  G  
Sbjct: 191 KIIDFGLATKLNPDEIVKVTT--ATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLS 248
Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVWT---PEFIDFVSRCLVKNPEERATASEMLNHE 236
           P+     +  +  +  +    F E D ++   PE  DF+   L K P +R T  + L H 
Sbjct: 249 PFAGEDDLETLQNV-KRCDWEFDE-DAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHP 306
Query: 237 FIQ 239
           +++
Sbjct: 307 WLK 309

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 94/229 (41%), Gaps = 49/229 (21%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D P++V    ++     L  +++    G +   +  +    SE ++     + + GLE++
Sbjct: 250 DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS-QHGVFSEADMRFYAAEIILGLEHM 308
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H R  ++RD                                 LK  NILL+  GH +++D
Sbjct: 309 HNRFVVYRD---------------------------------LKPANILLDEHGHVRISD 335
Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPY-- 181
            G+A   +    K +  +GT  +MAPEV+Q+ + YD  AD +SLG    ++  G  P+  
Sbjct: 336 LGLACDFSKK--KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQ 393
Query: 182 ---GDIHPM-RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
               D H + R    +  + P SF      +PE    +   L ++   R
Sbjct: 394 HKTKDKHEIDRMTLTMAVELPDSF------SPELRSLLEGLLQRDVNRR 436

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 9   VVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G  +     +L ++ME+   GS+ + ++  K+ +   ++        KG+EYL  
Sbjct: 76  IVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHKERIDHIKLLQYTSQICKGMEYLGT 135
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +R IHRD                                 L   NIL+  E   K+ DFG
Sbjct: 136 KRYIHRD---------------------------------LATRNILVENENRVKIGDFG 162
Query: 127 VAGQLTDTMAKRNTVIGTP-----FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   L     K    +  P     FW APE + E  +   +D+WS G+   E+
Sbjct: 163 LTKVLPQD--KEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL 213

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 103/266 (38%), Gaps = 70/266 (26%)
Query: 1   MQQCDSPYVVKYYGSYF-------------KNTDLWIVMEYCGAGSVSDIMRLRKKTLSE 47
           +   +  YVV+YY ++              K + L+I MEYC   ++ D++         
Sbjct: 56  LASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENRTLYDLIHSENLNQQR 115
Query: 48  DEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRL 107
           DE   +    L+ L Y+H +  IHRD                                 L
Sbjct: 116 DEYWRLFRQILEALSYIHSQGIIHRD---------------------------------L 142
Query: 108 KAGNILLNTEGHAKLADFGVAGQLTDTM--------------AKRNTVIGTPFWMAPEVI 153
           K  NI ++   + K+ DFG+A  +  ++                  + IGT  ++A EV+
Sbjct: 143 KPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVL 202
Query: 154 QEIG-YDCVADMWSLGITALEMAEGKPPYGD----IHPMRAIFMIPTKPPPSFREPDVWT 208
              G Y+   DM+SLGI   EM     P+      ++ ++ +  +  + PP F +  +  
Sbjct: 203 DGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERVNILKKLRSVSIEFPPDFDDNKMKV 259
Query: 209 PEFIDFVSRCLVKNPEERATASEMLN 234
            + I  +   +  +P +R  A  +LN
Sbjct: 260 EKKI--IRLLIDHDPNKRPGARTLLN 283

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 43/237 (18%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH- 65
           P ++   G   K  +L +VME+   G ++ +  L  K +  D +        +G+ YLH 
Sbjct: 66  PNIIALRGVCLKEPNLCLVMEFARGGPLNRV--LSGKRIPPDILVNWAVQIARGMNYLHD 123
Query: 66  --LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
             +   IHRD+K+ S  L+  +++   +   ++                        K+ 
Sbjct: 124 EAIVPIIHRDLKS-SNILILQKVENGDLSNKIL------------------------KIT 158
Query: 124 DFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGD 183
           DFG+A +   T   + +  G   WMAPEVI+   +   +D+WS G+   E+  G+ P+  
Sbjct: 159 DFGLAREWHRT--TKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRG 216
Query: 184 IHPMRAIFMIPTK----PPPSFREPDVWTPE-FIDFVSRCLVKNPEERATASEMLNH 235
           I  +   + +       P PS        PE F   +  C   +P  R + + +L+ 
Sbjct: 217 IDGLAVAYGVAMNKLALPIPST------CPEPFAKLMEDCWNPDPHSRPSFTNILDQ 267

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 104/255 (40%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++  K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 96  NDVYLVTHLMGA-DLNNIVKCAK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 146
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 147 ---------------------------LKPSNLAVNEDCELKILDFGLARHTDDEM---T 176
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 177 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 236
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 237 TPGAELLKKISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 296
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 297 QALAHAYFAQYHDPD 311

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 93/236 (39%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++M+    G + D +R  K  +    +        KG
Sbjct: 73  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 131
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 132 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 159 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 218
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 219 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 272

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 21/151 (13%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-QEIGYD-CVADM 164
           +K  NIL++  G  KL+DFG +  + D   K +   GT  +M PE    E  Y+    D+
Sbjct: 178 VKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSR--GTYEFMPPEFFSNESSYNGAKVDI 235
Query: 165 WSLGITALEMAEGKPPY----------GDI------HPM-RAIFMIPTKPPPSFREPDVW 207
           WSLGI    M     P+           +I      +P+ R  F+ P     S    +  
Sbjct: 236 WSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFL 295
Query: 208 TPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           + E IDF+   L KNP ER T+ + L HE++
Sbjct: 296 SNEDIDFLKLFLRKNPAERITSEDALKHEWL 326

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 93/236 (39%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++M+    G + D +R  K  +    +        KG
Sbjct: 72  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAKG 130
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 131 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 158 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 217
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 218 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 271

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 93/236 (39%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++M+    G + D +R  K  +    +        KG
Sbjct: 74  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 132
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 133 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 159
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 160 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 219
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 220 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 273

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 104/258 (40%), Gaps = 61/258 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL--------------- 45
           ++Q + P+V+K YG+  ++  L +++EY   GS+   +R  +K                 
Sbjct: 80  LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSL 139
Query: 46  -SEDEIATILCDTL-------KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVIT 97
              DE A  + D +       +G++YL   + +HRD                        
Sbjct: 140 DHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRD------------------------ 175
Query: 98  NQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL--TDTMAKRNTVIGTPFWMAPEVIQE 155
                    L A NIL+      K++DFG++  +   D+  KR+       WMA E + +
Sbjct: 176 ---------LAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFD 226
Query: 156 IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDF 214
             Y   +D+WS G+   E+   G  PY  I P R   ++ T        PD  + E    
Sbjct: 227 HIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTG--HRMERPDNCSEEMYRL 284
Query: 215 VSRCLVKNPEERATASEM 232
           + +C  + P++R   +++
Sbjct: 285 MLQCWKQEPDKRPVFADI 302

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 100/241 (41%), Gaps = 49/241 (20%)
Query: 13  YGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           +  Y    +L IV ++C   S+   + +++      ++  I   T +G++YLH +  IHR
Sbjct: 97  FMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHR 156
Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT 132
           D                                 +K+ NI L+     K+ DFG+A   +
Sbjct: 157 D---------------------------------MKSNNIFLHEGLTVKIGDFGLATVKS 183
Query: 133 DTMAKRNTV--IGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
                +      G+  WMAPEVI+      +   +D++S GI   E+  G+ PY  I+  
Sbjct: 184 RWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR 243
Query: 188 -RAIFMIPTKPPPSFREPDVWT-----PEFID-FVSRCLVKNPEERATASEMLNHEFIQR 240
            + IFM+       +  PD+       P+ +   V+ C+ K  EER    ++L+   + +
Sbjct: 244 DQIIFMVGR----GYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQ 299
Query: 241 H 241
           H
Sbjct: 300 H 300

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 93/236 (39%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++M+    G + D +R  K  +    +        KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 130 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 156
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 157 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 216
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 217 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 270

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P VV   G   +   + IV+E+   G++   +R      +  ++  +L     G
Sbjct: 98  MGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAG 157
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     +HRD                                 L A NIL+N+    
Sbjct: 158 MRYLADMGYVHRD---------------------------------LAARNILVNSNLVC 184
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  + D      T  G      W APE IQ   +   +D+WS GI   E M+ 
Sbjct: 185 KVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSY 244
Query: 177 GKPPYGDI 184
           G+ PY D+
Sbjct: 245 GERPYWDM 252

>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain (G719sT790M) IN The Apo Form Length = 334

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 93/236 (39%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++M+    G + D +R  K  +    +        KG
Sbjct: 78  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 136
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 137 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 163
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 164 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 223
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 224 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 277

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKSQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+     D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDSELKILDFGLCRHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 41/229 (17%)
Query: 13  YGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           +  Y     L IV ++C   S+   +   +      ++  I   T +G++YLH +  IHR
Sbjct: 73  FMGYSTKPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHR 132
Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT 132
           D                                 LK+ NI L+ +   K+ DFG+A   +
Sbjct: 133 D---------------------------------LKSNNIFLHEDNTVKIGDFGLATVKS 159
Query: 133 DTMAKRN--TVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
                     + G+  WMAPEVI+      Y   +D+++ GI   E+  G+ PY +I+  
Sbjct: 160 RWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR 219
Query: 188 RAIFMIPTKP--PPSFREPDVWTPEFID-FVSRCLVKNPEERATASEML 233
             I  +  +    P   +     P+ +   ++ CL K  +ER +   +L
Sbjct: 220 DQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRIL 268

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 93/236 (39%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++M+    G + D +R  K  +    +        KG
Sbjct: 72  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 130
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 131 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 158 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 217
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 218 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 271

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 104/258 (40%), Gaps = 61/258 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL--------------- 45
           ++Q + P+V+K YG+  ++  L +++EY   GS+   +R  +K                 
Sbjct: 80  LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSL 139
Query: 46  -SEDEIATILCDTL-------KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVIT 97
              DE A  + D +       +G++YL   + +HRD                        
Sbjct: 140 DHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRD------------------------ 175
Query: 98  NQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL--TDTMAKRNTVIGTPFWMAPEVIQE 155
                    L A NIL+      K++DFG++  +   D+  KR+       WMA E + +
Sbjct: 176 ---------LAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFD 226
Query: 156 IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDF 214
             Y   +D+WS G+   E+   G  PY  I P R   ++ T        PD  + E    
Sbjct: 227 HIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTG--HRMERPDNCSEEMYRL 284
Query: 215 VSRCLVKNPEERATASEM 232
           + +C  + P++R   +++
Sbjct: 285 MLQCWKQEPDKRPVFADI 302

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 93/236 (39%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++M+    G + D +R  K  +    +        KG
Sbjct: 75  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 133
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 134 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 160
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 161 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 220
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 221 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 274

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 49/233 (21%)
Query: 13  YGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           +  Y     L IV ++C   S+   + + +      ++  I   T +G++YLH +  IHR
Sbjct: 71  FMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHR 130
Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT 132
           D                                 LK+ NI L+ +   K+ DFG+A   +
Sbjct: 131 D---------------------------------LKSNNIFLHEDLTVKIGDFGLATVKS 157
Query: 133 DTMAKRN--TVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
                     + G+  WMAPEVI+   +  Y   +D+++ GI   E+  G+ PY +I+  
Sbjct: 158 RWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR 217
Query: 188 -RAIFMIPTKPPPSFREPDVWT-----PEFID-FVSRCLVKNPEERATASEML 233
            + IFM+       +  PD+       P+ +   ++ CL K  +ER    ++L
Sbjct: 218 DQIIFMVGR----GYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 266

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 79/206 (38%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P ++   G   K   + I+ EY   GS+   +R      +  ++  +L     G
Sbjct: 69  MGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSG 128
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 129 MKYLSDMSYVHRD---------------------------------LAARNILVNSNLVC 155
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W APE I    +   +D+WS GI   E M+ 
Sbjct: 156 KVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSY 215
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY D+     I  I      PPP
Sbjct: 216 GERPYWDMSNQDVIKAIEEGYRLPPP 241

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 79/206 (38%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P ++   G   K   + I+ EY   GS+   +R      +  ++  +L     G
Sbjct: 63  MGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSG 122
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 123 MKYLSDMSYVHRD---------------------------------LAARNILVNSNLVC 149
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W APE I    +   +D+WS GI   E M+ 
Sbjct: 150 KVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSY 209
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY D+     I  I      PPP
Sbjct: 210 GERPYWDMSNQDVIKAIEEGYRLPPP 235

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ D+G+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDYGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 49/233 (21%)
Query: 13  YGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           +  Y     L IV ++C   S+   + + +      ++  I   T +G++YLH +  IHR
Sbjct: 69  FMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHR 128
Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT 132
           D                                 LK+ NI L+ +   K+ DFG+A   +
Sbjct: 129 D---------------------------------LKSNNIFLHEDLTVKIGDFGLATVKS 155
Query: 133 DTMAKRN--TVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
                     + G+  WMAPEVI+   +  Y   +D+++ GI   E+  G+ PY +I+  
Sbjct: 156 RWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR 215
Query: 188 -RAIFMIPTKPPPSFREPDVWT-----PEFID-FVSRCLVKNPEERATASEML 233
            + IFM+       +  PD+       P+ +   ++ CL K  +ER    ++L
Sbjct: 216 DQIIFMVGR----GYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 264

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 48/216 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL-KGLEYLHLRRKIHRDIKAGSGT 80
           L+I ME+C  G++   +  R+    +  +A  L + + KG++Y+H ++ IHRD       
Sbjct: 109 LFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRD------- 161
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI L      K+ DFG+   L +   KR  
Sbjct: 162 --------------------------LKPSNIFLVDTKQVKIGDFGLVTSLKND-GKRTR 194
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPS 200
             GT  +M+PE I    Y    D+++LG+   E+         +H     F   +K    
Sbjct: 195 SKGTLRYMSPEQISSQDYGKEVDLYALGLILAEL---------LHVCDTAFE-TSKFFTD 244
Query: 201 FRE---PDVWTPEFIDFVSRCLVKNPEERATASEML 233
            R+    D++  +    + + L K PE+R   SE+L
Sbjct: 245 LRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEIL 280

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 49/233 (21%)
Query: 13  YGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           +  Y     L IV ++C   S+   + + +      ++  I   T +G++YLH +  IHR
Sbjct: 74  FMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHR 133
Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT 132
           D                                 LK+ NI L+ +   K+ DFG+A   +
Sbjct: 134 D---------------------------------LKSNNIFLHEDLTVKIGDFGLATVKS 160
Query: 133 DTMAKRN--TVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
                     + G+  WMAPEVI+   +  Y   +D+++ GI   E+  G+ PY +I+  
Sbjct: 161 RWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR 220
Query: 188 -RAIFMIPTKPPPSFREPDVWT-----PEFID-FVSRCLVKNPEERATASEML 233
            + IFM+       +  PD+       P+ +   ++ CL K  +ER    ++L
Sbjct: 221 DQIIFMVGR----GYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 269

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 49/233 (21%)
Query: 13  YGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           +  Y     L IV ++C   S+   + + +      ++  I   T +G++YLH +  IHR
Sbjct: 74  FMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHR 133
Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT 132
           D                                 LK+ NI L+ +   K+ DFG+A   +
Sbjct: 134 D---------------------------------LKSNNIFLHEDLTVKIGDFGLATVKS 160
Query: 133 DTMAKRN--TVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
                     + G+  WMAPEVI+   +  Y   +D+++ GI   E+  G+ PY +I+  
Sbjct: 161 RWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR 220
Query: 188 -RAIFMIPTKPPPSFREPDVWT-----PEFID-FVSRCLVKNPEERATASEML 233
            + IFM+       +  PD+       P+ +   ++ CL K  +ER    ++L
Sbjct: 221 DQIIFMVGR----GYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 269

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 41/229 (17%)
Query: 13  YGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           +  Y     L IV ++C   S+   + + +      ++  I   T +G++YLH +  IHR
Sbjct: 97  FMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHR 156
Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT 132
           D                                 LK+ NI L+ +   K+ DFG+A   +
Sbjct: 157 D---------------------------------LKSNNIFLHEDLTVKIGDFGLATVKS 183
Query: 133 DTMAKRN--TVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
                     + G+  WMAPEVI+   +  Y   +D+++ GI   E+  G+ PY +I+  
Sbjct: 184 RWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR 243
Query: 188 -RAIFMIPTK-PPPSFREPDVWTPEFID-FVSRCLVKNPEERATASEML 233
            + IFM+      P   +     P+ +   ++ CL K  +ER    ++L
Sbjct: 244 DQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 292

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 107/258 (41%), Gaps = 75/258 (29%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           +++++V    GA  +++I++   + LS++ +  ++   L+GL+Y+H    IHRD      
Sbjct: 98  SEVYLVTTLMGA-DLNNIVKC--QALSDEHVQFLVYQLLRGLKYIHSAGIIHRD------ 148
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   ++ DFG+A Q  + M    
Sbjct: 149 ---------------------------LKPSNVAVNEDCELRILDFGLARQADEEM---T 178
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+ +GK   P    I  ++ I  +  
Sbjct: 179 GYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKALFPGSDYIDQLKRIMEVVG 238
Query: 196 KPPPS----------------------------FREPDVWTPEFIDFVSRCLVKNPEERA 227
            P P                             FR  +   P  ID + R LV + ++R 
Sbjct: 239 TPSPEVLAKISSEHARTYIQSLPPMPQKDLSSIFRGAN---PLAIDLLGRMLVLDSDQRV 295
Query: 228 TASEMLNHE-FIQRHDTD 244
           +A+E L H  F Q HD +
Sbjct: 296 SAAEALAHAYFSQYHDPE 313

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 49/233 (21%)
Query: 13  YGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           +  Y     L IV ++C   S+   + + +      ++  I   T +G++YLH +  IHR
Sbjct: 96  FMGYSTKPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHR 155
Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT 132
           D                                 LK+ NI L+ +   K+ DFG+A   +
Sbjct: 156 D---------------------------------LKSNNIFLHEDLTVKIGDFGLATVKS 182
Query: 133 DTMAKRN--TVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
                     + G+  WMAPEVI+   +  Y   +D+++ GI   E+  G+ PY +I+  
Sbjct: 183 RWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR 242
Query: 188 -RAIFMIPTKPPPSFREPDVWT-----PEFID-FVSRCLVKNPEERATASEML 233
            + IFM+       +  PD+       P+ +   ++ CL K  +ER    ++L
Sbjct: 243 DQIIFMVGR----GYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 291

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPE-VIQEIGYDCVADMW 165
           +K  NIL++  G  KL DFG A  L       +  + T ++ APE ++ ++ Y    D+W
Sbjct: 150 IKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVW 209
Query: 166 SLGITALEMAEGKPPY---GDIHPMRAIFMIPTKPPPSFREPDVWTPEF----------- 211
           ++G    EM  G+P +    DI  +  I M      P  +E     P F           
Sbjct: 210 AIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKER 269
Query: 212 --------------IDFVSRCLVKNPEERATASEMLNHEFIQ 239
                         ID   +CL  +P++R   +E+L+H+F Q
Sbjct: 270 EPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQ 311

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 49/233 (21%)
Query: 13  YGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR 72
           +  Y     L IV ++C   S+   + + +      ++  I   T +G++YLH +  IHR
Sbjct: 69  FMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHR 128
Query: 73  DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT 132
           D                                 LK+ NI L+ +   K+ DFG+A   +
Sbjct: 129 D---------------------------------LKSNNIFLHEDLTVKIGDFGLATVKS 155
Query: 133 DTMAKRN--TVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM 187
                     + G+  WMAPEVI+   +  Y   +D+++ GI   E+  G+ PY +I+  
Sbjct: 156 RWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR 215
Query: 188 -RAIFMIPTKPPPSFREPDVWT-----PEFID-FVSRCLVKNPEERATASEML 233
            + IFM+       +  PD+       P+ +   ++ CL K  +ER    ++L
Sbjct: 216 DQIIFMVGR----GYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQIL 264

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 97/259 (37%), Gaps = 88/259 (33%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 124 VQDLMETDLYKLLKSQQLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 169
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA----------GQLTDTMAK 137
                              LK  N+L+NT    K+ DFG+A          G LT+ +A 
Sbjct: 170 -------------------LKPSNLLINTTCDLKICDFGLARIADPEHDHTGFLTEXVAT 210
Query: 138 RNTVIGTPFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMI 193
           R       ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I
Sbjct: 211 R-------WYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGI 263
Query: 194 PTKPP-------------------PSFREPDVWTPEF-------IDFVSRCLVKNPEERA 227
              P                    PS +    W   F       +D + R L  NP +R 
Sbjct: 264 LGSPSQEDLNCIINMKARNYLQSLPS-KTKVAWAKLFPKSDSKALDLLDRMLTFNPNKRI 322
Query: 228 TASEMLNHEFIQRHDTDPS 246
           T  E L H +++++  DP+
Sbjct: 323 TVEEALAHPYLEQY-YDPT 340

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           +V+ YG   K   ++I+ EY   G + + +R  +      ++  +  D  + +EYL  ++
Sbjct: 81  LVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ 140
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            +HRD                                 L A N L+N +G  K++DFG++
Sbjct: 141 FLHRD---------------------------------LAARNCLVNDQGVVKVSDFGLS 167
Query: 129 GQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPY 181
             + D   +  + +G+ F   W  PEV+    +   +D+W+ G+   E+ + GK PY
Sbjct: 168 RYVLDD--EETSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPY 222

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++M+    G + D +R  K  +    +        KG
Sbjct: 73  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 131
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 132 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 159 KITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 218
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 219 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELI 272

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 98/261 (37%), Gaps = 75/261 (28%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           D+++V    GA    D+ +L K + LS D I   L   L+GL+Y+H    +HRD      
Sbjct: 120 DVYLVTHLMGA----DLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD------ 169
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMA 136
                                      LK  N+LLNT    K+ DFG   VA    D   
Sbjct: 170 ---------------------------LKPSNLLLNTTXDLKICDFGLARVADPDHDHTG 202
Query: 137 KRNTVIGTPFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFM 192
                + T ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  
Sbjct: 203 FLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILG 262
Query: 193 IPTKP--------------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEE 225
           I   P                    P   + P  W   F       +D + + L  NP +
Sbjct: 263 ILGSPSQEDLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHK 320
Query: 226 RATASEMLNHEFIQRHDTDPS 246
           R    + L H +++++  DPS
Sbjct: 321 RIEVEQALAHPYLEQY-YDPS 340

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 103/258 (39%), Gaps = 61/258 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTL--------------- 45
           ++Q + P+V+K YG+  ++  L +++EY   GS+   +R  +K                 
Sbjct: 80  LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSL 139
Query: 46  -SEDEIATILCDTL-------KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVIT 97
              DE A  + D +       +G++YL     +HRD                        
Sbjct: 140 DHPDERALTMGDLISFAWQISQGMQYLAEMSLVHRD------------------------ 175
Query: 98  NQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL--TDTMAKRNTVIGTPFWMAPEVIQE 155
                    L A NIL+      K++DFG++  +   D+  KR+       WMA E + +
Sbjct: 176 ---------LAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIPVKWMAIESLFD 226
Query: 156 IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDF 214
             Y   +D+WS G+   E+   G  PY  I P R   ++ T        PD  + E    
Sbjct: 227 HIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTG--HRMERPDNCSEEMYRL 284
Query: 215 VSRCLVKNPEERATASEM 232
           + +C  + P++R   +++
Sbjct: 285 MLQCWKQEPDKRPVFADI 302

>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain Length = 360

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 11/190 (5%)
Query: 10  VKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRK 69
           VKY+G +     + ++ E  G      I R        ++I     + LK L YL     
Sbjct: 99  VKYHGKFMYYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSL 158
Query: 70  IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAG 129
            H D+K  +  L     +   I    +T+     ++R K+  I        KL DFG A 
Sbjct: 159 THTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGI--------KLIDFGCAT 210
Query: 130 QLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA 189
             +D      ++I T  + APEVI  +G+D  +DMWS G    E+  G   +     M  
Sbjct: 211 FKSDY---HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEH 267
Query: 190 IFMIPTKPPP 199
           + M+ +   P
Sbjct: 268 LAMMESIIQP 277

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           +V+ YG   K   ++I+ EY   G + + +R  +      ++  +  D  + +EYL  ++
Sbjct: 61  LVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ 120
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            +HRD                                 L A N L+N +G  K++DFG++
Sbjct: 121 FLHRD---------------------------------LAARNCLVNDQGVVKVSDFGLS 147
Query: 129 GQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPY 181
             + D   +  + +G+ F   W  PEV+    +   +D+W+ G+   E+ + GK PY
Sbjct: 148 RYVLDD--EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPY 202

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV E    GS+   +R      +  ++  +L     G
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 159
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 160 MKYLSDMGAVHRD---------------------------------LAARNILINSNLVC 186
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 246
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY ++     I  +      PPP
Sbjct: 247 GERPYWEMSNQDVIKAVDEGYRLPPP 272

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++M+    G + D +R  K  +    +        KG
Sbjct: 75  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 133
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 134 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 160
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 161 KITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 220
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 221 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 274

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           +V+ YG   K   ++I+ EY   G + + +R  +      ++  +  D  + +EYL  ++
Sbjct: 65  LVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ 124
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            +HRD                                 L A N L+N +G  K++DFG++
Sbjct: 125 FLHRD---------------------------------LAARNCLVNDQGVVKVSDFGLS 151
Query: 129 GQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPY 181
             + D   +  + +G+ F   W  PEV+    +   +D+W+ G+   E+ + GK PY
Sbjct: 152 RYVLDD--EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPY 206

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++M+    G + D +R  K  +    +        KG
Sbjct: 73  MASVDNPHVCRLLGICLTST-VQLIMQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 131
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 132 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 159 KITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 218
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 219 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 272

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           +V+ YG   K   ++I+ EY   G + + +R  +      ++  +  D  + +EYL  ++
Sbjct: 66  LVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ 125
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            +HRD                                 L A N L+N +G  K++DFG++
Sbjct: 126 FLHRD---------------------------------LAARNCLVNDQGVVKVSDFGLS 152
Query: 129 GQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPY 181
             + D   +  + +G+ F   W  PEV+    +   +D+W+ G+   E+ + GK PY
Sbjct: 153 RYVLDD--EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPY 207

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 87/225 (38%), Gaps = 58/225 (25%)
Query: 45  LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTL 104
           L  + I  ++   L+GL++LH    +HRD                               
Sbjct: 109 LPAETIKDLMRQFLRGLDFLHANCIVHRD------------------------------- 137
Query: 105 FRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM 164
             LK  NIL+ + G  KLADFG+A   +  MA  + V+ T ++ APEV+ +  Y    DM
Sbjct: 138 --LKPENILVTSGGTVKLADFGLARIYSYQMAL-DPVVVTLWYRAPEVLLQSTYATPVDM 194
Query: 165 WSLGITALEMAEGKP--------------------PYGDIHPMRAIFMIPTKPPPSFREP 204
           WS+G    EM   KP                    P  D  P          PP   R  
Sbjct: 195 WSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPV 254
Query: 205 DVWTPEFIDFVSRCLVK----NPEERATASEMLNHEFIQRHDTDP 245
               PE  +  ++ L++    NP +R +A   L H ++ + + +P
Sbjct: 255 QSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDEGNP 299

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 39/171 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           L+IV EY   GS+ D +R R ++ L  D +     D  + +EYL     +HRD       
Sbjct: 81  LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRD------- 133
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L A N+L++ +  AK++DFG+  + + T      
Sbjct: 134 --------------------------LAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL 167
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI 190
            +    W APE ++E  +   +D+WS GI   E+ + G+ PY  I P++ +
Sbjct: 168 PVK---WTAPEALREAAFSTKSDVWSFGILLWEIYSFGRVPYPRI-PLKDV 214

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           +V+ YG   K   ++I+ EY   G + + +R  +      ++  +  D  + +EYL  ++
Sbjct: 81  LVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ 140
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            +HRD                                 L A N L+N +G  K++DFG++
Sbjct: 141 FLHRD---------------------------------LAARNCLVNDQGVVKVSDFGLS 167
Query: 129 GQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPY 181
             + D   +  + +G+ F   W  PEV+    +   +D+W+ G+   E+ + GK PY
Sbjct: 168 RYVLDD--EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPY 222

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 86/225 (38%), Gaps = 58/225 (25%)
Query: 45  LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTL 104
           L  + I  ++   L+GL++LH    +HRD                               
Sbjct: 109 LPAETIKDLMRQFLRGLDFLHANCIVHRD------------------------------- 137
Query: 105 FRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM 164
             LK  NIL+ + G  KLADFG+A   +  MA    V+ T ++ APEV+ +  Y    DM
Sbjct: 138 --LKPENILVTSGGTVKLADFGLARIYSYQMALAPVVV-TLWYRAPEVLLQSTYATPVDM 194
Query: 165 WSLGITALEMAEGKP--------------------PYGDIHPMRAIFMIPTKPPPSFREP 204
           WS+G    EM   KP                    P  D  P          PP   R  
Sbjct: 195 WSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPV 254
Query: 205 DVWTPEFIDFVSRCLVK----NPEERATASEMLNHEFIQRHDTDP 245
               PE  +  ++ L++    NP +R +A   L H ++ + + +P
Sbjct: 255 QSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDEGNP 299

>pdb|2H34|A Chain A, Apoenzyme Crystal Structure Of The Tuberculosis SerineTHREONINE Kinase, Pkne Length = 309

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQLTD-TMAKRNTVIGTPFWMAPEVIQEIGYDCVADMW 165
           +K  NIL++ +  A L DFG+A   TD  + +    +GT ++ APE   E      AD++
Sbjct: 160 VKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYXAPERFSESHATYRADIY 219
Query: 166 SLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE 224
           +L     E   G PPY GD   +    +    P PS   P +    F   ++R   KNPE
Sbjct: 220 ALTCVLYECLTGSPPYQGDQLSVXGAHINQAIPRPSTVRPGIPV-AFDAVIARGXAKNPE 278
Query: 225 ER 226
           +R
Sbjct: 279 DR 280

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 38/177 (21%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTLKGLEYL 64
           P++ + +  +     L+ VMEY   G   D+M   ++     E        +   GL +L
Sbjct: 402 PFLTQLHSCFQTMDRLYFVMEYVNGG---DLMYHIQQVGRFKEPHAVFYAAEIAIGLFFL 458
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
             +  I+RD                                 LK  N++L++EGH K+AD
Sbjct: 459 QSKGIIYRD---------------------------------LKLDNVMLDSEGHIKIAD 485
Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           FG+  +            GTP ++APE+I    Y    D W+ G+   EM  G+ P+
Sbjct: 486 FGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPF 542

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 86/225 (38%), Gaps = 58/225 (25%)
Query: 45  LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTL 104
           L  + I  ++   L+GL++LH    +HRD                               
Sbjct: 117 LPAETIKDLMRQFLRGLDFLHANCIVHRD------------------------------- 145
Query: 105 FRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM 164
             LK  NIL+ + G  KLADFG+A   +  MA    V+ T ++ APEV+ +  Y    DM
Sbjct: 146 --LKPENILVTSGGTVKLADFGLARIYSYQMALTPVVV-TLWYRAPEVLLQSTYATPVDM 202
Query: 165 WSLGITALEMAEGKP--------------------PYGDIHPMRAIFMIPTKPPPSFREP 204
           WS+G    EM   KP                    P  D  P          PP   R  
Sbjct: 203 WSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPV 262
Query: 205 DVWTPEFIDFVSRCLVK----NPEERATASEMLNHEFIQRHDTDP 245
               PE  +  ++ L++    NP +R +A   L H ++ + + +P
Sbjct: 263 QSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDEGNP 307

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 47/253 (18%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D  ++ + + ++     L++VMEY   G +  ++    + +  +     L + +  ++ +
Sbjct: 119 DRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSV 178
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H    +HRDI                                 K  NILL+  GH +LAD
Sbjct: 179 HRLGYVHRDI---------------------------------KPDNILLDRCGHIRLAD 205
Query: 125 FGVAGQL-TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-------DMWSLGITALEMAE 176
           FG   +L  D   +    +GTP +++PE++Q +G            D W+LG+ A EM  
Sbjct: 206 FGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFY 265
Query: 177 GKPP-YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEE---RATASE 231
           G+ P Y D        ++  K   S    D   PE   DF+ R L   PE    R  A +
Sbjct: 266 GQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLCP-PETRLGRGGAGD 324
Query: 232 MLNHEFIQRHDTD 244
              H F    D D
Sbjct: 325 FRTHPFFFGLDWD 337

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           +V+ YG   K   ++I+ EY   G + + +R  +      ++  +  D  + +EYL  ++
Sbjct: 72  LVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ 131
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            +HRD                                 L A N L+N +G  K++DFG++
Sbjct: 132 FLHRD---------------------------------LAARNCLVNDQGVVKVSDFGLS 158
Query: 129 GQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPY 181
             + D   +  + +G+ F   W  PEV+    +   +D+W+ G+   E+ + GK PY
Sbjct: 159 RYVLDD--EYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPY 213

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 70/177 (39%), Gaps = 38/177 (21%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTLKGLEYL 64
           P++ + +  +     L+ VMEY   G   D+M   ++     E        +   GL +L
Sbjct: 81  PFLTQLHSCFQTMDRLYFVMEYVNGG---DLMYHIQQVGRFKEPHAVFYAAEIAIGLFFL 137
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
             +  I+RD                                 LK  N++L++EGH K+AD
Sbjct: 138 QSKGIIYRD---------------------------------LKLDNVMLDSEGHIKIAD 164
Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           FG+  +            GTP ++APE+I    Y    D W+ G+   EM  G+ P+
Sbjct: 165 FGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPF 221

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+  FG+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILGFGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV E    GS+   +R      +  ++  +L     G
Sbjct: 71  MGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 130
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 131 MKYLSDMGYVHRD---------------------------------LAARNILINSNLVC 157
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 158 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 217
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY ++     I  +      PPP
Sbjct: 218 GERPYWEMSNQDVIKAVDEGYRLPPP 243

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 40/206 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV E    GS+   +R      +  ++  +L     G
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 159
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 160 MKYLSDMGYVHRD---------------------------------LAARNILINSNLVC 186
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 187 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 246
Query: 177 GKPPYGDIHPMRAIFMIPTK---PPP 199
           G+ PY ++     I  +      PPP
Sbjct: 247 GERPYWEMSNQDVIKAVDEGYRLPPP 272

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + ++  ++ + 
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 162
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 163 TYQLARGMEYLASQKCIHRD---------------------------------LAARNVL 189
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      K+ADFG+A  + +    +NT  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 190 VTENNVMKIADFGLARDINNIDYYKNTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 249
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 250 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK 307
Query: 231 EML 233
           +++
Sbjct: 308 QLV 310

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 86/225 (38%), Gaps = 58/225 (25%)
Query: 45  LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTL 104
           L  + I  ++   L+GL++LH    +HRD                               
Sbjct: 109 LPAETIKDLMRQFLRGLDFLHANCIVHRD------------------------------- 137
Query: 105 FRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM 164
             LK  NIL+ + G  KLADFG+A   +  MA    V+ T ++ APEV+ +  Y    DM
Sbjct: 138 --LKPENILVTSGGTVKLADFGLARIYSYQMALFPVVV-TLWYRAPEVLLQSTYATPVDM 194
Query: 165 WSLGITALEMAEGKP--------------------PYGDIHPMRAIFMIPTKPPPSFREP 204
           WS+G    EM   KP                    P  D  P          PP   R  
Sbjct: 195 WSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPV 254
Query: 205 DVWTPEFIDFVSRCLVK----NPEERATASEMLNHEFIQRHDTDP 245
               PE  +  ++ L++    NP +R +A   L H ++ + + +P
Sbjct: 255 QSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDEGNP 299

>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With N-(4-chlorophenyl)-2- ((pyridin-4-ylmethyl)amino)benzamide Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 39/197 (19%)
Query: 42  KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIY 101
           K+ ++ +++ +      +G+E+L  R+ IHRD                            
Sbjct: 193 KEPITMEDLISYSFQVARGMEFLSSRKCIHRD---------------------------- 224
Query: 102 KTLFRLKAGNILLNTEGHAKLADFGVAGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGY 158
                L A NILL+     K+ DFG+A  +    D + K +T +    WMAPE I +  Y
Sbjct: 225 -----LAARNILLSENNVVKICDFGLARDIYKNPDYVRKGDTRLPLK-WMAPESIFDKIY 278
Query: 159 DCVADMWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSR 217
              +D+WS G+   E+ + G  PY  +  M   F    +     R P+  TPE    +  
Sbjct: 279 STKSDVWSYGVLLWEIFSLGGSPYPGVQ-MDEDFCSRLREGMRMRAPEYSTPEIYQIMLD 337
Query: 218 CLVKNPEERATASEMLN 234
           C  ++P+ER   +E++ 
Sbjct: 338 CWHRDPKERPRFAELVE 354

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 101/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     + D M     T +    I + L   L+
Sbjct: 58  LKELNHPNIVKLLDVIHTENKLYLVFEFLSM-DLKDFMDASALTGIPLPLIKSYLFQLLQ 116
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 117 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 143
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 144 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 203
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 204 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 262
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 263 RSLLSQMLHYDPNKRISAKAALAHPFFQ 290

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 97/249 (38%), Gaps = 71/249 (28%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D ++VM +      +D+ ++     SE++I  ++   LKGL+Y+H    +HRD       
Sbjct: 103 DFYLVMPFMQ----TDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK GN+ +N +   K+ DFG+A       A+   
Sbjct: 152 --------------------------LKPGNLAVNEDCELKILDFGLARHAD---AEMTG 182
Query: 141 VIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPY------------------ 181
            + T ++ APEVI   + Y+   D+WS+G    EM  GK  +                  
Sbjct: 183 YVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGV 242
Query: 182 ---------GDIHPMRAIFMIPTKPPPSFRE--PDVWTPEFIDFVSRCLVKNPEERATAS 230
                     D      I  +P  P   F +  P   +P+  D + + L  + ++R TA+
Sbjct: 243 PGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRA-SPQAADLLEKMLELDVDKRLTAA 301
Query: 231 EMLNHEFIQ 239
           + L H F +
Sbjct: 302 QALTHPFFE 310

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 89/240 (37%), Gaps = 56/240 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL-- 58
           M+      +V+ Y    +   ++I+ EY   GS+ D ++        DE   +L   L  
Sbjct: 62  MKTLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLK-------SDEGGKVLLPKLID 114
Query: 59  ------KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
                 +G+ Y+  +  IHRD                                 L+A N+
Sbjct: 115 FSAQIAEGMAYIERKNYIHRD---------------------------------LRAANV 141
Query: 113 LLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITA 171
           L++     K+ADFG+A  + D           P  W APE I    +   +D+WS GI  
Sbjct: 142 LVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSDVWSFGILL 201
Query: 172 LEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWT--PEFIDFVSRCLVKNPEERAT 228
            E+   GK PY    P R    + T     +R P V     E  D +  C  +  EER T
Sbjct: 202 YEIVTYGKIPY----PGRTNADVMTALSQGYRMPRVENCPDELYDIMKMCWKEKAEERPT 257

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 101/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     + D M     T +    I + L   L+
Sbjct: 59  LKELNHPNIVKLLDVIHTENKLYLVFEFLSM-DLKDFMDASALTGIPLPLIKSYLFQLLQ 117
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 118 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 144
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 145 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 205 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 263
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 264 RSLLSQMLHYDPNKRISAKAALAHPFFQ 291

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 74  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 132
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 133 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 159
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 160 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 219
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 220 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELI 273

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 97/249 (38%), Gaps = 71/249 (28%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D ++VM +      +D+ ++     SE++I  ++   LKGL+Y+H    +HRD       
Sbjct: 121 DFYLVMPFMQ----TDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRD------- 169
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK GN+ +N +   K+ DFG+A       A+   
Sbjct: 170 --------------------------LKPGNLAVNEDCELKILDFGLARHAD---AEMTG 200
Query: 141 VIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPY------------------ 181
            + T ++ APEVI   + Y+   D+WS+G    EM  GK  +                  
Sbjct: 201 YVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGV 260
Query: 182 ---------GDIHPMRAIFMIPTKPPPSFRE--PDVWTPEFIDFVSRCLVKNPEERATAS 230
                     D      I  +P  P   F +  P   +P+  D + + L  + ++R TA+
Sbjct: 261 PGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRA-SPQAADLLEKMLELDVDKRLTAA 319
Query: 231 EMLNHEFIQ 239
           + L H F +
Sbjct: 320 QALTHPFFE 328

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 130 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 156
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 157 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 216
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 217 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELI 270

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 81  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 139
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 140 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 166
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 167 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 226
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 227 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELI 280

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ D G+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDAGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 96  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 154
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 155 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 181
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 182 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 241
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 242 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 295

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLITQLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 130 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 156
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 157 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 216
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 217 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 270

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DF +A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDFYLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 65  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 123
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 124 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 150
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 151 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 210
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 211 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 264

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 77  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 135
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 136 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 162
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 163 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 222
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 223 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 276

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 74  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 132
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 133 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 159
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 160 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 219
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 220 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 273

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 130 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 156
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 157 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 216
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 217 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 270

>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain Length = 307

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 104/252 (41%), Gaps = 65/252 (25%)
Query: 19  NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS 78
           +T  ++V E    GS+   ++ ++K  +E E + ++ D    L++LH +   HRD     
Sbjct: 83  DTRFYLVFEKLQGGSILAHIQ-KQKHFNEREASRVVRDVAAALDFLHTKGIAHRD----- 136
Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA---KLADF--GVAGQLTD 133
                                       LK  NIL  +       K+ DF  G   +L +
Sbjct: 137 ----------------------------LKPENILCESPEKVSPVKICDFDLGSGMKLNN 168
Query: 134 -----TMAKRNTVIGTPFWMAPEVI-----QEIGYDCVADMWSLGITALEMAEGKPPY-- 181
                T  +  T  G+  +MAPEV+     Q   YD   D+WSLG+    M  G PP+  
Sbjct: 169 SCTPITTPELTTPCGSAEYMAPEVVEVFTDQATFYDKRCDLWSLGVVLYIMLSGYPPFVG 228
Query: 182 ----------GDIHPMRAIFMIPTKPPPSFREPDV-W---TPEFIDFVSRCLVKNPEERA 227
                     G++  +    +  +     +  PD  W   + E  D +S+ LV++ ++R 
Sbjct: 229 HCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISKLLVRDAKQRL 288
Query: 228 TASEMLNHEFIQ 239
           +A+++L H ++Q
Sbjct: 289 SAAQVLQHPWVQ 300

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + ++ R+               + LS  ++ + 
Sbjct: 96  IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHNPEEQLSSKDLVSC 155
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 156 AYQVARGMEYLASKKCIHRD---------------------------------LAARNVL 182
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +  +   K+ADFG+A  +      + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 183 VTEDNVMKIADFGLARDIHHIDXXKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLL 242
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  + P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 243 WEIFTLGGSPYPGV-PVEELFKL-LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK 300
Query: 231 EML 233
           +++
Sbjct: 301 QLV 303

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 39/171 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           L+IV EY   GS+ D +R R ++ L  D +     D  + +EYL     +HRD       
Sbjct: 90  LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRD------- 142
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L A N+L++ +  AK++DFG+  + + T      
Sbjct: 143 --------------------------LAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL 176
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI 190
            +    W APE ++E  +   +D+WS GI   E+ + G+ PY  I P++ +
Sbjct: 177 PVK---WTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI-PLKDV 223

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 73  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 131
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 132 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 159 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 218
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 219 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 272

>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s) Length = 334

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 78  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 136
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 137 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 163
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 164 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 223
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 224 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 277

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 74  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 132
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 133 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 159
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 160 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 219
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 220 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 273

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 39/241 (16%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +VK +  +      ++VME    G + + ++ +KK  SE E + I+   +  + ++H 
Sbjct: 66  PNIVKLHEVFHDQLHTFLVMELLNGGELFERIK-KKKHFSETEASYIMRKLVSAVSHMHD 124
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              +HRD+K     L  D  D   IK                             + DFG
Sbjct: 125 VGVVHRDLKP-ENLLFTDENDNLEIK-----------------------------IIDFG 154
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYG---- 182
            A           T   T  + APE++ + GYD   D+WSLG+    M  G+ P+     
Sbjct: 155 FARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDR 214
Query: 183 DIHPMRAIFMIPTKPPPSFR-EPDVW---TPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
            +    A+ ++       F  E + W   + E  D +   L  +P +R   S +  +E++
Sbjct: 215 SLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWL 274
Query: 239 Q 239
           Q
Sbjct: 275 Q 275

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 39/171 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           L+IV EY   GS+ D +R R ++ L  D +     D  + +EYL     +HRD       
Sbjct: 75  LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRD------- 127
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L A N+L++ +  AK++DFG+  + + T      
Sbjct: 128 --------------------------LAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKL 161
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI 190
            +    W APE ++E  +   +D+WS GI   E+ + G+ PY  I P++ +
Sbjct: 162 PVK---WTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI-PLKDV 208

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 55/253 (21%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q     +++  G   K   + I+ EY   G++   +R +    S  ++  +L     G
Sbjct: 100 MGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAG 159
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 160 MKYLANMNYVHRD---------------------------------LAARNILVNSNLVC 186
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W APE I    +   +D+WS GI   E M  
Sbjct: 187 KVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTY 246
Query: 177 GKPPYGDI---HPMRAI---FMIPTKPP-PS---------FREPDVWTPEFIDFVSRC-- 218
           G+ PY ++     M+AI   F +PT    PS         +++     P+F D VS    
Sbjct: 247 GERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDK 306
Query: 219 LVKNPEERATASE 231
           L++ P+   T ++
Sbjct: 307 LIRAPDSLKTLAD 319

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ D G+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDRGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In Complex With Amp-Pnp Length = 327

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 130 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 156
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 157 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 216
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 217 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 270

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 78  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 136
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 137 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 163
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 164 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 223
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 224 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 277

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 90/235 (38%), Gaps = 65/235 (27%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSEDEIA-------------------TILC---DTLK 59
           ++++ EYC  G + + +R +++  SEDEI                     +LC      K
Sbjct: 124 IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAK 183
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+E+L  +  +HRD                                 L A N+L+     
Sbjct: 184 GMEFLEFKSCVHRD---------------------------------LAARNVLVTHGKV 210
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-----WMAPEVIQEIGYDCVADMWSLGITALEM 174
            K+ DFG+A    D M+  N V+         WMAPE + E  Y   +D+WS GI   E+
Sbjct: 211 VKICDFGLA---RDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEI 267
Query: 175 -AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
            + G  PY  I P+ A F    +      +P   T E    +  C   +  +R +
Sbjct: 268 FSLGVNPYPGI-PVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPS 321

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 104/255 (40%), Gaps = 69/255 (27%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
            D+++V    GA  +++I++ +K  L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 100 NDVYLVTHLMGA-DLNNIVKCQK--LTDDHVQFLIYQILRGLKYIHSADIIHRD------ 150
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ D G+A    D M    
Sbjct: 151 ---------------------------LKPSNLAVNEDCELKILDGGLARHTDDEMTG-- 181
Query: 140 TVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPT 195
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P    I  ++ I  +  
Sbjct: 182 -YVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 240
Query: 196 KPP----------------------PSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
            P                       P     +V+    P  +D + + LV + ++R TA+
Sbjct: 241 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAA 300
Query: 231 EMLNHE-FIQRHDTD 244
           + L H  F Q HD D
Sbjct: 301 QALAHAYFAQYHDPD 315

>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine Kinase Length = 277

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 90/235 (38%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  D P++VK  G   +    WI+ME    G +   +   K +L    +        K 
Sbjct: 63  MKNLDHPHIVKLIG-IIEEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKA 121
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     +HRDI                                    NIL+ +    
Sbjct: 122 MAYLESINCVHRDIAVR---------------------------------NILVASPECV 148
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D    + +V   P  WM+PE I    +   +D+W   +   E ++ GK
Sbjct: 149 KLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGK 208
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
            P+  +     I ++  +      +PD+  P     ++RC   +P +R   +E++
Sbjct: 209 QPFFWLENKDVIGVL--EKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELV 261

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 41/186 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLW-IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           MQQ D+PY+V+  G      + W +VME    G ++  ++ + + + +  I  ++     
Sbjct: 82  MQQLDNPYIVRMIG--ICEAESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSM 138
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G++YL     +HRD                                 L A N+LL T+ +
Sbjct: 139 GMKYLEESNFVHRD---------------------------------LAARNVLLVTQHY 165
Query: 120 AKLADFGVAGQLT--DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MA 175
           AK++DFG++  L   +   K  T    P  W APE I    +   +D+WS G+   E  +
Sbjct: 166 AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 225
Query: 176 EGKPPY 181
            G+ PY
Sbjct: 226 YGQKPY 231

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 41/186 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLW-IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           MQQ D+PY+V+  G      + W +VME    G ++  ++ + + + +  I  ++     
Sbjct: 82  MQQLDNPYIVRMIG--ICEAESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSM 138
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G++YL     +HRD                                 L A N+LL T+ +
Sbjct: 139 GMKYLEESNFVHRD---------------------------------LAARNVLLVTQHY 165
Query: 120 AKLADFGVAGQLT--DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MA 175
           AK++DFG++  L   +   K  T    P  W APE I    +   +D+WS G+   E  +
Sbjct: 166 AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 225
Query: 176 EGKPPY 181
            G+ PY
Sbjct: 226 YGQKPY 231

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 105 MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 163
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 164 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 190
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 191 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 250
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 251 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 304

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 41/186 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLW-IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           MQQ D+PY+V+  G      + W +VME    G ++  ++ + + + +  I  ++     
Sbjct: 80  MQQLDNPYIVRMIG--ICEAESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSM 136
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G++YL     +HRD                                 L A N+LL T+ +
Sbjct: 137 GMKYLEESNFVHRD---------------------------------LAARNVLLVTQHY 163
Query: 120 AKLADFGVAGQLT--DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MA 175
           AK++DFG++  L   +   K  T    P  W APE I    +   +D+WS G+   E  +
Sbjct: 164 AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 223
Query: 176 EGKPPY 181
            G+ PY
Sbjct: 224 YGQKPY 229

>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a Length = 293

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 90/235 (38%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  D P++VK  G   +    WI+ME    G +   +   K +L    +        K 
Sbjct: 79  MKNLDHPHIVKLIG-IIEEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKA 137
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     +HRDI                                    NIL+ +    
Sbjct: 138 MAYLESINCVHRDIAVR---------------------------------NILVASPECV 164
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D    + +V   P  WM+PE I    +   +D+W   +   E ++ GK
Sbjct: 165 KLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGK 224
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
            P+  +     I ++  +      +PD+  P     ++RC   +P +R   +E++
Sbjct: 225 QPFFWLENKDVIGVL--EKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELV 277

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 41/186 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLW-IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           MQQ D+PY+V+  G      + W +VME    G ++  ++ + + + +  I  ++     
Sbjct: 62  MQQLDNPYIVRMIG--ICEAESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSM 118
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G++YL     +HRD                                 L A N+LL T+ +
Sbjct: 119 GMKYLEESNFVHRD---------------------------------LAARNVLLVTQHY 145
Query: 120 AKLADFGVAGQLT--DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MA 175
           AK++DFG++  L   +   K  T    P  W APE I    +   +D+WS G+   E  +
Sbjct: 146 AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 205
Query: 176 EGKPPY 181
            G+ PY
Sbjct: 206 YGQKPY 211

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 41/186 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLW-IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           MQQ D+PY+V+  G      + W +VME    G ++  ++ + + + +  I  ++     
Sbjct: 424 MQQLDNPYIVRMIG--ICEAESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSM 480
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G++YL     +HRD                                 L A N+LL T+ +
Sbjct: 481 GMKYLEESNFVHRD---------------------------------LAARNVLLVTQHY 507
Query: 120 AKLADFGVAGQLT--DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MA 175
           AK++DFG++  L   +   K  T    P  W APE I    +   +D+WS G+   E  +
Sbjct: 508 AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 567
Query: 176 EGKPPY 181
            G+ PY
Sbjct: 568 YGQKPY 573

>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1) Length = 311

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 94/230 (40%), Gaps = 46/230 (20%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P  V+   ++ +   L++  E CG  S+         +L E ++   L DTL  L +LH 
Sbjct: 117 PCCVRLEQAWEEGGILYLQTELCGP-SLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHS 175
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +  +H D+K                                   NI L   G  KL DFG
Sbjct: 176 QGLVHLDVKPA---------------------------------NIFLGPRGRCKLGDFG 202
Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA-EGKPPYG--D 183
           +  +L  T        G P +MAPE++Q   Y   AD++SLG+T LE+A   + P+G   
Sbjct: 203 LLVEL-GTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEG 260
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
              +R  ++     PP F      + E    +   L  +P+ RATA  +L
Sbjct: 261 WQQLRQGYL-----PPEFTA--GLSSELRSVLVMMLEPDPKLRATAEALL 303

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 41/186 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLW-IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           MQQ D+PY+V+  G      + W +VME    G ++  ++ + + + +  I  ++     
Sbjct: 66  MQQLDNPYIVRMIG--ICEAESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSM 122
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G++YL     +HRD                                 L A N+LL T+ +
Sbjct: 123 GMKYLEESNFVHRD---------------------------------LAARNVLLVTQHY 149
Query: 120 AKLADFGVAGQLT--DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MA 175
           AK++DFG++  L   +   K  T    P  W APE I    +   +D+WS G+   E  +
Sbjct: 150 AKISDFGLSKALRADENXYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 209
Query: 176 EGKPPY 181
            G+ PY
Sbjct: 210 YGQKPY 215

>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine Kinase 2 Beta (ptk2b) Length = 281

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 90/235 (38%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  D P++VK  G   +    WI+ME    G +   +   K +L    +        K 
Sbjct: 67  MKNLDHPHIVKLIG-IIEEEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKA 125
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     +HRDI                                    NIL+ +    
Sbjct: 126 MAYLESINCVHRDIAVR---------------------------------NILVASPECV 152
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D    + +V   P  WM+PE I    +   +D+W   +   E ++ GK
Sbjct: 153 KLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGK 212
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
            P+  +     I ++  +      +PD+  P     ++RC   +P +R   +E++
Sbjct: 213 QPFFWLENKDVIGVL--EKGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELV 265

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 101/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     + D M     T +    I + L   L+
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKDFMDASALTGIPLPLIKSYLFQLLQ 114
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 115 GLAFCHSHRVLHRD---------------------------------LKPENLLINTEGA 141
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 142 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 202 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 260
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 261 RSLLSQMLHYDPNKRISAKAALAHPFFQ 288

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 41/186 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLW-IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           MQQ D+PY+V+  G      + W +VME    G ++  ++ + + + +  I  ++     
Sbjct: 66  MQQLDNPYIVRMIG--ICEAESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSM 122
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G++YL     +HRD                                 L A N+LL T+ +
Sbjct: 123 GMKYLEESNFVHRD---------------------------------LAARNVLLVTQHY 149
Query: 120 AKLADFGVAGQLT--DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MA 175
           AK++DFG++  L   +   K  T    P  W APE I    +   +D+WS G+   E  +
Sbjct: 150 AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 209
Query: 176 EGKPPY 181
            G+ PY
Sbjct: 210 YGQKPY 215

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + ++ R+               + LS  ++ + 
Sbjct: 85  IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSC 144
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 145 AYQVARGMEYLASKKCIHRD---------------------------------LAARNVL 171
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +  +   K+ADFG+A  +      + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 172 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLL 231
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  + P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 232 WEIFTLGGSPYPGV-PVEELFKL-LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK 289
Query: 231 EML 233
           +++
Sbjct: 290 QLV 292

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 41/186 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLW-IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           MQQ D+PY+V+  G      + W +VME    G ++  ++ + + + +  I  ++     
Sbjct: 425 MQQLDNPYIVRMIG--ICEAESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSM 481
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G++YL     +HRD                                 L A N+LL T+ +
Sbjct: 482 GMKYLEESNFVHRD---------------------------------LAARNVLLVTQHY 508
Query: 120 AKLADFGVAGQLT--DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MA 175
           AK++DFG++  L   +   K  T    P  W APE I    +   +D+WS G+   E  +
Sbjct: 509 AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 568
Query: 176 EGKPPY 181
            G+ PY
Sbjct: 569 YGQKPY 574

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + ++ R+               + LS  ++ + 
Sbjct: 89  IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSC 148
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 149 AYQVARGMEYLASKKCIHRD---------------------------------LAARNVL 175
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +  +   K+ADFG+A  +      + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 176 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLL 235
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  + P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 236 WEIFTLGGSPYPGV-PVEELFKL-LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK 293
Query: 231 EML 233
           +++
Sbjct: 294 QLV 296

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + ++ R+               + LS  ++ + 
Sbjct: 81  IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSC 140
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 141 AYQVARGMEYLASKKCIHRD---------------------------------LAARNVL 167
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +  +   K+ADFG+A  +      + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 168 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLL 227
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  + P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 228 WEIFTLGGSPYPGV-PVEELFKL-LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK 285
Query: 231 EML 233
           +++
Sbjct: 286 QLV 288

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 41/186 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLW-IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           MQQ D+PY+V+  G      + W +VME    G ++  ++ + + + +  I  ++     
Sbjct: 72  MQQLDNPYIVRMIG--ICEAESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSM 128
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G++YL     +HRD                                 L A N+LL T+ +
Sbjct: 129 GMKYLEESNFVHRD---------------------------------LAARNVLLVTQHY 155
Query: 120 AKLADFGVAGQLT--DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MA 175
           AK++DFG++  L   +   K  T    P  W APE I    +   +D+WS G+   E  +
Sbjct: 156 AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 215
Query: 176 EGKPPY 181
            G+ PY
Sbjct: 216 YGQKPY 221

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + ++ R+               + LS  ++ + 
Sbjct: 88  IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSC 147
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 148 AYQVARGMEYLASKKCIHRD---------------------------------LAARNVL 174
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +  +   K+ADFG+A  +      + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 175 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLL 234
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  + P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 235 WEIFTLGGSPYPGV-PVEELFKL-LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK 292
Query: 231 EML 233
           +++
Sbjct: 293 QLV 295

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + ++ R+               + LS  ++ + 
Sbjct: 96  IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSC 155
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 156 AYQVARGMEYLASKKCIHRD---------------------------------LAARNVL 182
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +  +   K+ADFG+A  +      + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 183 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLL 242
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  + P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 243 WEIFTLGGSPYPGV-PVEELFKL-LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK 300
Query: 231 EML 233
           +++
Sbjct: 301 QLV 303

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 41/186 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLW-IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           MQQ D+PY+V+  G      + W +VME    G ++  ++ + + + +  I  ++     
Sbjct: 60  MQQLDNPYIVRMIG--ICEAESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSM 116
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G++YL     +HRD                                 L A N+LL T+ +
Sbjct: 117 GMKYLEESNFVHRD---------------------------------LAARNVLLVTQHY 143
Query: 120 AKLADFGVAGQLT--DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MA 175
           AK++DFG++  L   +   K  T    P  W APE I    +   +D+WS G+   E  +
Sbjct: 144 AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS 203
Query: 176 EGKPPY 181
            G+ PY
Sbjct: 204 YGQKPY 209

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 104 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 149
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 150 -------------------LKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVAT 190
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 191 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 250
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 251 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 308
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 309 AHPYLEQY-YDPS 320

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + ++ R+               + LS  ++ + 
Sbjct: 96  IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSC 155
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 156 AYQVARGMEYLASKKCIHRD---------------------------------LAARNVL 182
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +  +   K+ADFG+A  +      + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 183 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLL 242
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  + P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 243 WEIFTLGGSPYPGV-PVEELFKL-LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK 300
Query: 231 EML 233
           +++
Sbjct: 301 QLV 303

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + ++ R+               + LS  ++ + 
Sbjct: 137 IINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSC 196
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 197 AYQVARGMEYLASKKCIHRD---------------------------------LAARNVL 223
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +  +   K+ADFG+A  +      + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 224 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLL 283
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  + P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 284 WEIFTLGGSPYPGV-PVEELFKL-LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK 341
Query: 231 EML 233
           +++
Sbjct: 342 QLV 344

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 108 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 153
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 154 -------------------LKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVAT 194
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 195 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 254
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 255 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 312
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 313 AHPYLEQY-YDPS 324

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 104 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 149
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 150 -------------------LKPSNLLLNTTXDLKIXDFGLARVADPDHDHTGFLTEYVAT 190
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 191 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 250
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 251 DLNXIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 308
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 309 AHPYLEQY-YDPS 320

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 104 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 149
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 150 -------------------LKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVAT 190
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 191 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 250
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 251 DLNXIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 308
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 309 AHPYLEQY-YDPS 320

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 108 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 153
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 154 -------------------LKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVAT 194
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 195 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 254
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 255 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 312
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 313 AHPYLEQY-YDPS 324

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 91/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 73  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 131
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 132 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 159 KITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 218
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 219 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELI 272

>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 305

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 86/225 (38%), Gaps = 44/225 (19%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
           +++VMEYC  G    +  + +K     +     C  + GLEYLH +  +H+DI       
Sbjct: 83  MYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDI------- 135
Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN-- 139
                                     K GN+LL T G  K++  GVA  L    A     
Sbjct: 136 --------------------------KPGNLLLTTGGTLKISALGVAEALHPFAADDTCR 169
Query: 140 TVIGTPFWMAPEVIQEIGYDCVA----DMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT 195
           T  G+P +  PE+    G D  +    D+WS G+T   +  G  P+   +  +    I  
Sbjct: 170 TSQGSPAFQPPEIAN--GLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGK 227
Query: 196 KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
               S+  P    P   D +   L   P +R +  ++  H + ++
Sbjct: 228 G---SYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRK 269

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 109/278 (39%), Gaps = 84/278 (30%)
Query: 17  FKN-TDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI 74
           F+N  +++I+ E       +D+ R +  + LS+D I   +  TL+ ++ LH    IHRD 
Sbjct: 83  FENFNEVYIIQELMQ----TDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRD- 137
Query: 75  KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT 134
                                           LK  N+L+N+    K+ DFG+A ++ D 
Sbjct: 138 --------------------------------LKPSNLLINSNCDLKVCDFGLA-RIIDE 164
Query: 135 MAKRNT-----------VIGTPFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKP--P 180
            A  N+            + T ++ APEV +    Y    D+WS G    E+   +P  P
Sbjct: 165 SAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFP 224
Query: 181 YGDI-HPMRAIFMIPTKP----------PPSFRE-----------------PDVWTPEFI 212
             D  H +  IF I   P           P  RE                 P V  P+ I
Sbjct: 225 GRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRV-NPKGI 283
Query: 213 DFVSRCLVKNPEERATASEMLNHEFIQR-HDTDPSQNG 249
           D + R LV +P +R TA E L H ++Q  HD +    G
Sbjct: 284 DLLQRMLVFDPAKRITAKEALEHPYLQTYHDPNDEPEG 321

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 96/253 (37%), Gaps = 56/253 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   +     IV EY   GS+   +R      +  ++  +L     G
Sbjct: 104 MGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAG 163
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     +HRD                                 L A N+L+++    
Sbjct: 164 MRYLSDLGYVHRD---------------------------------LAARNVLVDSNLVC 190
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W APE I    +   +D+WS G+   E +A 
Sbjct: 191 KVSDFGLSRVLEDDPDAAXTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAY 250
Query: 177 GKPPYGDIHPMRAIFMI--------PTKPPPSFRE--PDVW------TPEFIDFVS--RC 218
           G+ PY ++     I  +        P   P +  +   D W       P F   VS    
Sbjct: 251 GERPYWNMTNRDVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDA 310
Query: 219 LVKNPEE-RATAS 230
           L+++PE  RATA+
Sbjct: 311 LIRSPESLRATAT 323

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 104 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 149
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 150 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVAT 190
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 191 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 250
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 251 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 308
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 309 AHPYLEQY-YDPS 320

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 106 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 151
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 152 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVAT 192
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 193 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 252
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 253 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 310
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 311 AHPYLEQY-YDPS 322

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + ++  ++ + 
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 162
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 163 TYQLARGMEYLASQKCIHRD---------------------------------LAARNVL 189
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      K+ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 190 VTENNVMKIADFGLARDINNIDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 249
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 250 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK 307
Query: 231 EML 233
           +++
Sbjct: 308 QLV 310

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 108 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 153
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 154 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVAT 194
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 195 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 254
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 255 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 312
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 313 AHPYLEQY-YDPS 324

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 112 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 157
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 158 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVAT 198
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 199 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 258
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 259 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 316
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 317 AHPYLEQY-YDPS 328

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 104 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 149
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 150 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVAT 190
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 191 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 250
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 251 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 308
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 309 AHPYLEQY-YDPS 320

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 109 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 154
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 155 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVAT 195
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 196 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 255
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 256 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 313
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 314 AHPYLEQY-YDPS 325

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 110 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 155
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 156 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVAT 196
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 197 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 256
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 257 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 314
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 315 AHPYLEQY-YDPS 326

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 101 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 146
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 147 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVAT 187
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 188 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 247
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 248 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 305
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 306 AHPYLEQY-YDPS 317

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 108 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 153
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 154 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVAT 194
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 195 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 254
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 255 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 312
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 313 AHPYLEQY-YDPS 324

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 102 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 147
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 148 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVAT 188
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 189 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPEQE 248
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 249 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 306
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 307 AHPYLEQY-YDPS 318

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 91/253 (35%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 106 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 151
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 152 -------------------LKPSNLLLNTTSDLKICDFGLARVADPDHDHTGFLTEYVAT 192
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 193 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 252
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 253 DLNCGINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 310
Query: 234 NHEFIQRHDTDPS 246
            H ++ ++  DPS
Sbjct: 311 AHPYLAQY-YDPS 322

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 48/216 (22%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL-KGLEYLHLRRKIHRDIKAGSGT 80
           L+I ME+C  G++   +  R+    +  +A  L + + KG++Y+H ++ I+RD       
Sbjct: 95  LFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRD------- 147
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI L      K+ DFG+   L +   KR  
Sbjct: 148 --------------------------LKPSNIFLVDTKQVKIGDFGLVTSLKND-GKRXR 180
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPS 200
             GT  +M+PE I    Y    D+++LG+   E+         +H     F   +K    
Sbjct: 181 SKGTLRYMSPEQISSQDYGKEVDLYALGLILAEL---------LHVCDTAFE-TSKFFTD 230
Query: 201 FRE---PDVWTPEFIDFVSRCLVKNPEERATASEML 233
            R+    D++  +    + + L K PE+R   SE+L
Sbjct: 231 LRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEIL 266

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 109/278 (39%), Gaps = 84/278 (30%)
Query: 17  FKN-TDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI 74
           F+N  +++I+ E       +D+ R +  + LS+D I   +  TL+ ++ LH    IHRD 
Sbjct: 83  FENFNEVYIIQELMQ----TDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRD- 137
Query: 75  KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT 134
                                           LK  N+L+N+    K+ DFG+A ++ D 
Sbjct: 138 --------------------------------LKPSNLLINSNCDLKVCDFGLA-RIIDE 164
Query: 135 MAKRNT-----------VIGTPFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKP--P 180
            A  N+            + T ++ APEV +    Y    D+WS G    E+   +P  P
Sbjct: 165 SAADNSEPTGQQSGMTEYVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFP 224
Query: 181 YGDI-HPMRAIFMIPTKP----------PPSFRE-----------------PDVWTPEFI 212
             D  H +  IF I   P           P  RE                 P V  P+ I
Sbjct: 225 GRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRV-NPKGI 283
Query: 213 DFVSRCLVKNPEERATASEMLNHEFIQR-HDTDPSQNG 249
           D + R LV +P +R TA E L H ++Q  HD +    G
Sbjct: 284 DLLQRMLVFDPAKRITAKEALEHPYLQTYHDPNDEPEG 321

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + ++  ++ + 
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEXSYDINRVPEEQMTFKDLVSC 162
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 163 TYQLARGMEYLASQKCIHRD---------------------------------LAARNVL 189
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      K+ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 190 VTENNVMKIADFGLARDINNIDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 249
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 250 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK 307
Query: 231 EML 233
           +++
Sbjct: 308 QLV 310

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 109/278 (39%), Gaps = 84/278 (30%)
Query: 17  FKN-TDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI 74
           F+N  +++I+ E       +D+ R +  + LS+D I   +  TL+ ++ LH    IHRD 
Sbjct: 83  FENFNEVYIIQELMQ----TDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRD- 137
Query: 75  KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT 134
                                           LK  N+L+N+    K+ DFG+A ++ D 
Sbjct: 138 --------------------------------LKPSNLLINSNCDLKVCDFGLA-RIIDE 164
Query: 135 MAKRNT-----------VIGTPFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKP--P 180
            A  N+            + T ++ APEV +    Y    D+WS G    E+   +P  P
Sbjct: 165 SAADNSEPTGQQSGMTEXVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFP 224
Query: 181 YGDI-HPMRAIFMIPTKP----------PPSFRE-----------------PDVWTPEFI 212
             D  H +  IF I   P           P  RE                 P V  P+ I
Sbjct: 225 GRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRV-NPKGI 283
Query: 213 DFVSRCLVKNPEERATASEMLNHEFIQR-HDTDPSQNG 249
           D + R LV +P +R TA E L H ++Q  HD +    G
Sbjct: 284 DLLQRMLVFDPAKRITAKEALEHPYLQTYHDPNDEPEG 321

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           +V+ YG   K   ++I+ EY   G + + +R  +      ++  +  D  + +EYL  ++
Sbjct: 66  LVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQ 125
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            +HRD                                 L A N L+N +G  K++DFG++
Sbjct: 126 FLHRD---------------------------------LAARNCLVNDQGVVKVSDFGLS 152
Query: 129 GQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPY 181
             + D   +  +  G+ F   W  PEV+    +   +D+W+ G+   E+ + GK PY
Sbjct: 153 RYVLDD--EYTSSRGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPY 207

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 124 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 169
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 170 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVAT 210
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 211 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 270
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 271 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 328
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 329 AHPYLEQY-YDPS 340

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 102 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 147
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 148 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVAT 188
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 189 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 248
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 249 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 306
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 307 AHPYLEQY-YDPS 318

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + ++ R+               + LS  ++ + 
Sbjct: 96  IINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHNPEEQLSSKDLVSC 155
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 156 AYQVARGMEYLASKKCIHRD---------------------------------LAARNVL 182
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +  +   K+ADFG+A  +      + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 183 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLL 242
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  + P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 243 WEIFTLGGSPYPGV-PVEELFKL-LKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFK 300
Query: 231 EML 233
           +++
Sbjct: 301 QLV 303

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 103/269 (38%), Gaps = 65/269 (24%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q   P +V     + +   L +V EYC    + ++ R  ++ + E  + +I   TL+ 
Sbjct: 56  LKQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRY-QRGVPEHLVKSITWQTLQA 114
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + + H    IHRD+K                                   NIL+      
Sbjct: 115 VNFCHKHNCIHRDVKPE---------------------------------NILITKHSVI 141
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPE-VIQEIGYDCVADMWSLGITALEMAEGKP 179
           KL DFG A  LT      +  + T ++ +PE ++ +  Y    D+W++G    E+  G P
Sbjct: 142 KLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVP 201
Query: 180 PY----------------GDIHP-MRAIF---------MIPTK---PPPSFREPDVWTPE 210
            +                GD+ P  + +F          IP      P   + P++  P 
Sbjct: 202 LWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPA 261
Query: 211 FIDFVSRCLVKNPEERATASEMLNHEFIQ 239
            +  +  CL  +P ER T  ++L+H + +
Sbjct: 262 -LGLLKGCLHMDPTERLTCEQLLHHPYFE 289

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 92/247 (37%), Gaps = 71/247 (28%)
Query: 35  SDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKC 93
           +D+ +L K + LS D I   L   L+GL+Y+H    +HRD                    
Sbjct: 114 TDLYKLLKCQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------------- 153
Query: 94  NVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGTPFWMAP 150
                        LK  N+LLNT    K+ DFG   VA    D        + T ++ AP
Sbjct: 154 -------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAP 200
Query: 151 EV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--------- 197
           E+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P         
Sbjct: 201 EIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCII 260
Query: 198 -----------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEMLNHEFIQ 239
                      P   + P  W   F       +D + + L  NP +R    + L H +++
Sbjct: 261 NLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLE 318
Query: 240 RHDTDPS 246
           ++  DPS
Sbjct: 319 QY-YDPS 324

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 91/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 130 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 156
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 157 KITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 216
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 217 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 270

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 91/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 78  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 136
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 137 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 163
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 164 KITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 223
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 224 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 277

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 99/257 (38%), Gaps = 77/257 (29%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A ++S ++++    L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYIVMELMDA-NLSQVIQME---LDHERMSYLLYQMLVGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 152 --------------------------LKPSNIVVKSDATLKILDFGLARTAGTSFMMTPY 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPTKP 197
           V+ T ++ APEVI  +GY    D+WS+G+   EM +G    P    I     +      P
Sbjct: 186 VV-TRYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244
Query: 198 PPSFRE-------------------------PDVWTP-----------EFIDFVSRCLVK 221
            P F +                         PDV  P           +  D +S+ LV 
Sbjct: 245 SPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVI 304
Query: 222 NPEERATASEMLNHEFI 238
           +  +R +  E L H +I
Sbjct: 305 DASKRISVDEALQHPYI 321

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 96/253 (37%), Gaps = 56/253 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   +     IV EY   GS+   +R      +  ++  +L     G
Sbjct: 104 MGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAG 163
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     +HRD                                 L A N+L+++    
Sbjct: 164 MRYLSDLGYVHRD---------------------------------LAARNVLVDSNLVC 190
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W APE I    +   +D+WS G+   E +A 
Sbjct: 191 KVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAY 250
Query: 177 GKPPYGDIHPMRAIFMI--------PTKPPPSFRE--PDVW------TPEFIDFVS--RC 218
           G+ PY ++     I  +        P   P +  +   D W       P F   VS    
Sbjct: 251 GERPYWNMTNRDVISSVEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDA 310
Query: 219 LVKNPEE-RATAS 230
           L+++PE  RATA+
Sbjct: 311 LIRSPESLRATAT 323

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        +G
Sbjct: 68  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAEG 126
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 127 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 153
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 154 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 213
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I P   I  I  K      +P + T +    + +C + + + R    E++
Sbjct: 214 SKPYDGI-PASEISSILEK-GERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELI 267

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 108 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 153
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 154 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVAT 194
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 195 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 254
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 255 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 312
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 313 AHPYLEQY-YDPS 324

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 92/253 (36%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 109 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 154
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 155 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVAT 195
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 196 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 255
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 256 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 313
Query: 234 NHEFIQRHDTDPS 246
            H +++++  DPS
Sbjct: 314 AHPYLEQY-YDPS 325

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 37/188 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P ++   G   K+  + IV EY   GS+   ++      +  ++  +L     G
Sbjct: 77  MGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFTVIQLVGMLRGISAG 136
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 137 MKYLSDMGYVHRD---------------------------------LAARNILINSNLVC 163
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEMAE- 176
           K++DFG++  L D      T  G      W APE I    +   +D+WS GI   E+   
Sbjct: 164 KVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAFRKFTSASDVWSYGIVMWEVVSY 223
Query: 177 GKPPYGDI 184
           G+ PY ++
Sbjct: 224 GERPYWEM 231

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 99/257 (38%), Gaps = 77/257 (29%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A ++S ++++    L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYIVMELMDA-NLSQVIQME---LDHERMSYLLYQMLVGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 152 --------------------------LKPSNIVVKSDATLKILDFGLA-RTAGTSFMMTP 184
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPTKP 197
            + T ++ APEVI  +GY    D+WS+G+   EM +G    P    I     +      P
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244
Query: 198 PPSFRE-------------------------PDVWTP-----------EFIDFVSRCLVK 221
            P F +                         PDV  P           +  D +S+ LV 
Sbjct: 245 SPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVI 304
Query: 222 NPEERATASEMLNHEFI 238
           +  +R +  E L H +I
Sbjct: 305 DASKRISVDEALQHPYI 321

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 33/183 (18%)
Query: 102 KTLFR-LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-EIGYD 159
           K L R LK  N+L+N  G  KL DFG+A      +   ++ + T ++ AP+V+     Y 
Sbjct: 128 KILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYS 187
Query: 160 CVADMWSLGITALEMAEGKPPY---GDIHPMRAIF----------------------MIP 194
              D+WS G    EM  GKP +    D   ++ IF                       I 
Sbjct: 188 TSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQ 247
Query: 195 TKPPPSFR---EPDVWTP---EFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQN 248
            +PP   R   +P    P     +DF+   L  NP+ R +A + L+H +   +    S  
Sbjct: 248 QRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYYHHASMG 307
Query: 249 GGK 251
           G +
Sbjct: 308 GSR 310

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + ++  ++ + 
Sbjct: 90  IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 149
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 150 TYQLARGMEYLASQKCIHRD---------------------------------LTARNVL 176
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      K+ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 177 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 236
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 237 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK 294
Query: 231 EML 233
           +++
Sbjct: 295 QLV 297

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + ++  ++ + 
Sbjct: 95  IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 154
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 155 TYQLARGMEYLASQKCIHRD---------------------------------LAARNVL 181
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      K+ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 182 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 241
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 242 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK 299
Query: 231 EML 233
           +++
Sbjct: 300 QLV 302

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 91/253 (35%), Gaps = 76/253 (30%)
Query: 34  VSDIMR------LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLD 87
           V D+M       L+ + LS D I   L   L+GL+Y+H    +HRD              
Sbjct: 106 VQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD-------------- 151
Query: 88  YCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG---VAGQLTDTMAKRNTVIGT 144
                              LK  N+LLNT    K+ DFG   VA    D        + T
Sbjct: 152 -------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVAT 192
Query: 145 PFWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPYGDIH---PMRAIFMIPTKP--- 197
            ++ APE+ +   GY    D+WS+G    EM   +P +   H    +  I  I   P   
Sbjct: 193 RWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQE 252
Query: 198 -----------------PPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASEML 233
                            P   + P  W   F       +D + + L  NP +R    + L
Sbjct: 253 DLNCIINLKARNYLLSLPHKNKVP--WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQAL 310
Query: 234 NHEFIQRHDTDPS 246
            H ++ ++  DPS
Sbjct: 311 AHPYLAQY-YDPS 322

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + ++  ++ + 
Sbjct: 92  IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 151
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 152 TYQLARGMEYLASQKCIHRD---------------------------------LAARNVL 178
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      K+ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 179 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 238
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 239 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK 296
Query: 231 EML 233
           +++
Sbjct: 297 QLV 299

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + ++  ++ + 
Sbjct: 149 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 208
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 209 TYQLARGMEYLASQKCIHRD---------------------------------LAARNVL 235
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      K+ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 236 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 295
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 296 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK 353
Query: 231 EML 233
           +++
Sbjct: 354 QLV 356

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + ++  ++ + 
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 162
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 163 TYQLARGMEYLASQKCIHRD---------------------------------LAARNVL 189
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      K+ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 190 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 249
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 250 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK 307
Query: 231 EML 233
           +++
Sbjct: 308 QLV 310

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 42/208 (20%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q + P +++  G    +  + I+ E+   G++   +RL     +  ++  +L     G
Sbjct: 71  MGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASG 130
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     +HRD                                 L A NIL+N+    
Sbjct: 131 MRYLAEMSYVHRD---------------------------------LAARNILVNSNLVC 157
Query: 121 KLADFGVAGQLTDTMA--KRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-M 174
           K++DFG++  L +  +     + +G      W APE I    +   +D WS GI   E M
Sbjct: 158 KVSDFGLSRFLEENSSDPTETSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVM 217
Query: 175 AEGKPPYGDIHPMRAIFMIPTK---PPP 199
           + G+ PY D+     I  I      PPP
Sbjct: 218 SFGERPYWDMSNQDVINAIEQDYRLPPP 245

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 54/245 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR----LRKKTLSEDEIATILCD 56
           + + + P +VK YG+      L  VMEY   GS+ +++     L   T +      + C 
Sbjct: 56  LSRVNHPNIVKLYGACLNPVCL--VMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCS 113
Query: 57  TLKGLEYLHLRRK---IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
             +G+ YLH  +    IHRD+K  +  LV                          AG  +
Sbjct: 114 --QGVAYLHSMQPKALIHRDLKPPNLLLV--------------------------AGGTV 145
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALE 173
           L      K+ DFG A  +   M       G+  WMAPEV +   Y    D++S GI   E
Sbjct: 146 L------KICDFGTACDIQTHMTNNK---GSAAWMAPEVFEGSNYSEKCDVFSWGIILWE 196
Query: 174 MAEGKPPYGDIH--PMRAIFMI--PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA 229
           +   + P+ +I     R ++ +   T+PP     P          ++RC  K+P +R + 
Sbjct: 197 VITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPK----PIESLMTRCWSKDPSQRPSM 252
Query: 230 SEMLN 234
            E++ 
Sbjct: 253 EEIVK 257

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 99/245 (40%), Gaps = 54/245 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR----LRKKTLSEDEIATILCD 56
           + + + P +VK YG+      L  VMEY   GS+ +++     L   T +      + C 
Sbjct: 55  LSRVNHPNIVKLYGACLNPVCL--VMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCS 112
Query: 57  TLKGLEYLHLRRK---IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
             +G+ YLH  +    IHRD+K  +  LV                          AG  +
Sbjct: 113 --QGVAYLHSMQPKALIHRDLKPPNLLLV--------------------------AGGTV 144
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALE 173
           L      K+ DFG A  +   M       G+  WMAPEV +   Y    D++S GI   E
Sbjct: 145 L------KICDFGTACDIQTHMTNNK---GSAAWMAPEVFEGSNYSEKCDVFSWGIILWE 195
Query: 174 MAEGKPPYGDIH--PMRAIFMI--PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA 229
           +   + P+ +I     R ++ +   T+PP     P          ++RC  K+P +R + 
Sbjct: 196 VITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPK----PIESLMTRCWSKDPSQRPSM 251
Query: 230 SEMLN 234
            E++ 
Sbjct: 252 EEIVK 256

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 114
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 115 GLSFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 141
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 142 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 202 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 260
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 261 RSLLSQMLHYDPNKRISAKAALAHPFFQ 288

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + ++  ++ + 
Sbjct: 103 IIHLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 162
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 163 TYQLARGMEYLASQKCIHRD---------------------------------LAARNVL 189
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      K+ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 190 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 249
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 250 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK 307
Query: 231 EML 233
           +++
Sbjct: 308 QLV 310

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 114
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 115 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 141
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 142 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGXKYYSTAVDIWSLGCIFAEMVTRR 201
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 202 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 260
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 261 RSLLSQMLHYDPNKRISAKAALAHPFFQ 288

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 57  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 115
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 116 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 142
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 143 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 203 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 261
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 262 RSLLSQMLHYDPNKRISAKAALAHPFFQ 289

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + ++  ++ + 
Sbjct: 103 IITLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 162
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 163 TYQLARGMEYLASQKCIHRD---------------------------------LAARNVL 189
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      K+ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 190 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 249
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 250 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK 307
Query: 231 EML 233
           +++
Sbjct: 308 QLV 310

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 99/267 (37%), Gaps = 62/267 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ + P +VK          L++V E+      + +       +    I + L   L+G
Sbjct: 55  LKELNHPNIVKLLDVIHTENKLYLVFEHVHQDLKTFMDASALTGIPLPLIKSYLFQLLQG 114
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L + H  R +HRD                                 LK  N+L+NTEG  
Sbjct: 115 LAFCHSHRVLHRD---------------------------------LKPQNLLINTEGAI 141
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK- 178
           KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   + 
Sbjct: 142 KLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRA 201
Query: 179 --PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF------------ 214
             P   +I  +  IF     P     P     PD + P F      DF            
Sbjct: 202 LFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDGR 260
Query: 215 --VSRCLVKNPEERATASEMLNHEFIQ 239
             +S+ L  +P +R +A   L H F Q
Sbjct: 261 SLLSQMLHYDPNKRISAKAALAHPFFQ 287

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 63  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 121
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 122 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 148
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 149 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGXKYYSTAVDIWSLGCIFAEMVTRR 208
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 209 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 267
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 268 RSLLSQMLHYDPNKRISAKAALAHPFFQ 295

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 99/267 (37%), Gaps = 62/267 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ + P +VK          L++V E+      + +       +    I + L   L+G
Sbjct: 59  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKTFMDASALTGIPLPLIKSYLFQLLQG 118
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L + H  R +HRD                                 LK  N+L+NTEG  
Sbjct: 119 LAFCHSHRVLHRD---------------------------------LKPQNLLINTEGAI 145
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK- 178
           KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   + 
Sbjct: 146 KLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRA 205
Query: 179 --PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF------------ 214
             P   +I  +  IF     P     P     PD + P F      DF            
Sbjct: 206 LFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDGR 264
Query: 215 --VSRCLVKNPEERATASEMLNHEFIQ 239
             +S+ L  +P +R +A   L H F Q
Sbjct: 265 SLLSQMLHYDPNKRISAKAALAHPFFQ 291

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 114
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 115 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 141
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 142 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 202 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 260
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 261 RSLLSQMLHYDPNKRISAKAALAHPFFQ 288

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 55  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 113
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 114 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 140
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 141 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 201 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 259
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 260 RSLLSQMLHYDPNKRISAKAALAHPFFQ 287

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 114
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 115 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 141
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 142 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 202 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 260
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 261 RSLLSQMLHYDPNKRISAKAALAHPFFQ 288

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 57  LKELNHPNIVKLLDVIHTENKLYLVFEFLSM-DLKKFMDASALTGIPLPLIKSYLFQLLQ 115
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 116 GLAFCHSHRVLHRD---------------------------------LKPENLLINTEGA 142
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 143 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 203 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 261
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 262 RSLLSQMLHYDPNKRISAKAALAHPFFQ 289

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 114
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 115 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 141
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 142 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 202 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 260
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 261 RSLLSQMLHYDPNKRISAKAALAHPFFQ 288

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 55  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 113
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 114 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 140
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 141 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 201 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 259
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 260 RSLLSQMLHYDPNKRISAKAALAHPFFQ 287

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 40/172 (23%)
Query: 8   YVVKYYGSY--FKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           +++KY G         L +VMEY   GS+ D   L + ++   ++        +G+ YLH
Sbjct: 94  HIIKYKGCCEDAGAASLQLVMEYVPLGSLRDY--LPRHSIGLAQLLLFAQQICEGMAYLH 151
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +  IHRD                                 L A N+LL+ +   K+ DF
Sbjct: 152 AQHYIHRD---------------------------------LAARNVLLDNDRLVKIGDF 178
Query: 126 GVAGQLTDTMAK---RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           G+A  + +       R       FW APE ++E  +   +D+WS G+T  E+
Sbjct: 179 GLAKAVPEGHEXYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYEL 230

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 63  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 121
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 122 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 148
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 149 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 208
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 209 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 267
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 268 RSLLSQMLHYDPNKRISAKAALAHPFFQ 295

>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770 Length = 285

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 43/243 (17%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLS---EDEIATILCDTLKGLEYL 64
           +VV+Y+ ++ ++  + I  EYC  GS++D +    + +S   E E+  +L    +GL Y+
Sbjct: 68  HVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYI 127
Query: 65  HLRRKIHRDIKAG----SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           H    +H DIK      S T + +       + +  +N   K +F               
Sbjct: 128 HSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASN---KVMF--------------- 169
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV--ADMWSLGITALEM--AE 176
           K+ D G   +++    +     G   ++A EV+QE  Y  +  AD+++L +T +    AE
Sbjct: 170 KIGDLGHVTRISSPQVEE----GDSRFLANEVLQE-NYTHLPKADIFALALTVVXAAGAE 224
Query: 177 GKPPYGDI-HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
             P  GD  H +R       + P   R P V + EF + +   +  +PE R +A  ++ H
Sbjct: 225 PLPRNGDQWHEIRQ-----GRLP---RIPQVLSQEFTELLKVMIHPDPERRPSAMALVKH 276
Query: 236 EFI 238
             +
Sbjct: 277 SVL 279

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 59  LKELNHPNIVKLLDVIHTENKLYLVFEFLSM-DLKKFMDASALTGIPLPLIKSYLFQLLQ 117
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 118 GLAFCHSHRVLHRD---------------------------------LKPENLLINTEGA 144
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 145 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 205 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 263
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 264 RSLLSQMLHYDPNKRISAKAALAHPFFQ 291

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 60  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 118
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 119 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 145
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 146 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 205
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 206 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 264
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 265 RSLLSQMLHYDPNKRISAKAALAHPFFQ 292

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 55  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 113
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 114 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 140
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 141 IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 201 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 259
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 260 RSLLSQMLHYDPNKRISAKAALAHPFFQ 287

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 67/236 (28%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           + L+ + +   L   L+GL+Y+H  + IHRD                             
Sbjct: 153 QPLTLEHVRYFLYQLLRGLKYMHSAQVIHRD----------------------------- 183
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN----TVIGTPFWMAPEVIQEIG- 157
               LK  N+L+N     K+ DFG+A  L  + A+        + T ++ APE++  +  
Sbjct: 184 ----LKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHE 239
Query: 158 YDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPTKPPPSF------------- 201
           Y    D+WS+G    EM   +   P    +H ++ I M+   P P+              
Sbjct: 240 YTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYI 299
Query: 202 -----REPDVWTPEF-------IDFVSRCLVKNPEERATASEMLNHEFIQR-HDTD 244
                R+P  W   +       +  + R L   P  R +A+  L H F+ + HD D
Sbjct: 300 QSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHDPD 355

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 57  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 115
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 116 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 142
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 143 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 203 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 261
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 262 RSLLSQMLHYDPNKRISAKAALAHPFFQ 289

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 114
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 115 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 141
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 142 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 202 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 260
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 261 RSLLSQMLHYDPNKRISAKAALAHPFFQ 288

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 114
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 115 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 141
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 142 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 202 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 260
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 261 RSLLSQMLHYDPNKRISAKAALAHPFFQ 288

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 114
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 115 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 141
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 142 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 202 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 260
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 261 RSLLSQMLHYDPNKRISAKAALAHPFFQ 288

>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle Protein Titin Length = 321

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 96/236 (40%), Gaps = 39/236 (16%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           ++  + S+    +L ++ E+     + + +      L+E EI + +    + L++LH   
Sbjct: 63  ILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHN 122
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
             H DI+                      N IY+T    ++  I        K+ +FG A
Sbjct: 123 IGHFDIRP--------------------ENIIYQTR---RSSTI--------KIIEFGQA 151
Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR 188
            QL      R  +   P + APEV Q        DMWSLG     +  G  P+      +
Sbjct: 152 RQLKPGDNFR-LLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQ 210
Query: 189 AIFMIP----TKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
            I  I     T    +F+E  +   E +DFV R LVK  + R TASE L H ++++
Sbjct: 211 IIENIMNAEYTFDEEAFKEISI---EAMDFVDRLLVKERKSRMTASEALQHPWLKQ 263

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 59  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 117
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 118 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 144
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 145 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 205 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 263
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 264 RSLLSQMLHYDPNKRISAKAALAHPFFQ 291

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 58  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 116
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 117 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 143
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 144 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 203
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 204 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 262
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 263 RSLLSQMLHYDPNKRISAKAALAHPFFQ 290

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 57  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 115
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 116 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 142
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 143 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 203 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 261
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 262 RSLLSQMLHYDPNKRISAKAALAHPFFQ 289

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 59  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 117
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 118 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 144
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 145 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 205 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 263
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 264 RSLLSQMLHYDPNKRISAKAALAHPFFQ 291

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 56  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 114
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 115 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 141
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 142 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 201
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 202 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 260
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 261 RSLLSQMLHYDPNKRISAKAALAHPFFQ 288

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 81/208 (38%), Gaps = 42/208 (20%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q + P +++  G    +  + I+ E+   G++   +RL     +  ++  +L     G
Sbjct: 69  MGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASG 128
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     +HRD                                 L A NIL+N+    
Sbjct: 129 MRYLAEMSYVHRD---------------------------------LAARNILVNSNLVC 155
Query: 121 KLADFGVAGQLTDTMA--KRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-M 174
           K++DFG++  L +  +     + +G      W APE I    +   +D WS GI   E M
Sbjct: 156 KVSDFGLSRFLEENSSDPTYTSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVM 215
Query: 175 AEGKPPYGDIHPMRAIFMIPTK---PPP 199
           + G+ PY D+     I  I      PPP
Sbjct: 216 SFGERPYWDMSNQDVINAIEQDYRLPPP 243

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 60  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 118
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 119 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 145
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 146 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 205
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 206 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 264
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 265 RSLLSQMLHYDPNKRISAKAALAHPFFQ 292

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 90/236 (38%), Gaps = 67/236 (28%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           + L+ + +   L   L+GL+Y+H  + IHRD                             
Sbjct: 154 QPLTLEHVRYFLYQLLRGLKYMHSAQVIHRD----------------------------- 184
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN----TVIGTPFWMAPEVIQEIG- 157
               LK  N+L+N     K+ DFG+A  L  + A+        + T ++ APE++  +  
Sbjct: 185 ----LKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHE 240
Query: 158 YDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPTKPPPSF------------- 201
           Y    D+WS+G    EM   +   P    +H ++ I M+   P P+              
Sbjct: 241 YTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYI 300
Query: 202 -----REPDVWTPEF-------IDFVSRCLVKNPEERATASEMLNHEFIQR-HDTD 244
                R+P  W   +       +  + R L   P  R +A+  L H F+ + HD D
Sbjct: 301 QSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHDPD 356

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 55  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 113
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 114 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 140
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 141 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 201 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 259
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 260 RSLLSQMLHYDPNKRISAKAALAHPFFQ 287

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 58  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 116
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 117 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 143
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 144 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 203
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 204 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 262
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 263 RSLLSQMLHYDPNKRISAKAALAHPFFQ 290

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 55  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 113
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 114 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 140
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 141 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 201 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 259
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 260 RSLLSQMLHYDPNKRISAKAALAHPFFQ 287

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 99/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++EY   G++ + +R R+               + ++  ++ + 
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 162
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 163 TYQLARGMEYLASQKCIHRD---------------------------------LAARNVL 189
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      ++ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 190 VTENNVMRIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 249
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 250 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK 307
Query: 231 EML 233
           +++
Sbjct: 308 QLV 310

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 30/238 (12%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           +V   G+      + ++ EYC  G + + +R + + L  D    I   TL   + LH   
Sbjct: 112 IVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTLSTRDLLHFSS 171
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH-AKLADFGV 127
           ++ +             + + + K     N I++ +    A N+LL T GH AK+ DFG+
Sbjct: 172 QVAQG------------MAFLASK-----NCIHRDV---AARNVLL-TNGHVAKIGDFGL 210
Query: 128 AGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGD 183
           A  +   ++ + K N  +    WMAPE I +  Y   +D+WS GI   E+ + G  PY  
Sbjct: 211 ARDIMNDSNYIVKGNARLPVK-WMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPG 269
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH 241
           I  + + F    K      +P          +  C    P  R T  ++ +  F+Q  
Sbjct: 270 I-LVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICS--FLQEQ 324

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 58  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 116
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 117 GLAFCHSHRVLHRD---------------------------------LKPENLLINTEGA 143
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 144 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 203
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 204 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 262
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 263 RSLLSQMLHYDPNKRISAKAALAHPFFQ 290

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 57  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 115
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 116 GLAFCHSHRVLHRD---------------------------------LKPENLLINTEGA 142
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 143 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 203 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 261
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 262 RSLLSQMLHYDPNKRISAKAALAHPFFQ 289

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 93/235 (39%), Gaps = 47/235 (20%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 62  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 120
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 121 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 147
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEMA- 175
            K+ADFG+A  + D  A+     G  F   W APE I    +   +D+WS GI   E+  
Sbjct: 148 CKIADFGLARLIED--AEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 205
Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
            G+ PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 206 HGRIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 256

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 97/234 (41%), Gaps = 34/234 (14%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSED---EIATILCDTLKGLEY 63
           P ++   G+      L++ +EY   G++ D +R + + L  D    IA     TL   + 
Sbjct: 83  PNIINLLGACEHRGYLYLAIEYAPHGNLLDFLR-KSRVLETDPAFAIANSTASTLSSQQL 141
Query: 64  LHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLA 123
           LH    + R             +DY S K  +  N        L A NIL+     AK+A
Sbjct: 142 LHFAADVARG------------MDYLSQKQFIHRN--------LAARNILVGENYVAKIA 181
Query: 124 DFGVA-GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPY 181
           DFG++ GQ  +   K+        WMA E +    Y   +D+WS G+   E+   G  PY
Sbjct: 182 DFGLSRGQ--EVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPY 239
Query: 182 GDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             +        +  K P  +R  +P     E  D + +C  + P ER + +++L
Sbjct: 240 CGM----TCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQIL 289

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 100/268 (37%), Gaps = 64/268 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +++ + P +VK          L++V E+     +   M     T +    I + L   L+
Sbjct: 59  LKELNHPNIVKLLDVIHTENKLYLVFEHVDQ-DLKKFMDASALTGIPLPLIKSYLFQLLQ 117
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL + H  R +HRD                                 LK  N+L+NTEG 
Sbjct: 118 GLAFCHSHRVLHRD---------------------------------LKPQNLLINTEGA 144
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGK 178
            KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   +
Sbjct: 145 IKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204
Query: 179 ---PPYGDIHPMRAIFMIPTKP-----PPSFREPDVWTPEF-----IDF----------- 214
              P   +I  +  IF     P     P     PD + P F      DF           
Sbjct: 205 ALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD-YKPSFPKWARQDFSKVVPPLDEDG 263
Query: 215 ---VSRCLVKNPEERATASEMLNHEFIQ 239
              +S+ L  +P +R +A   L H F Q
Sbjct: 264 RSLLSQMLHYDPNKRISAKAALAHPFFQ 291

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 36/187 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q   P +V+  G   +   ++IVME    G     +R     L    +  ++ D   G
Sbjct: 166 LKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAG 225
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +EYL  +  IHRD                                 L A N L+  +   
Sbjct: 226 MEYLESKCCIHRD---------------------------------LAARNCLVTEKNVL 252
Query: 121 KLADFGVAGQLTDTM-AKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K++DFG++ +  D + A    +   P  W APE +    Y   +D+WS GI   E  + G
Sbjct: 253 KISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLG 312
Query: 178 KPPYGDI 184
             PY ++
Sbjct: 313 ASPYPNL 319

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 36/187 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q   P +V+  G   +   ++IVME    G     +R     L    +  ++ D   G
Sbjct: 166 LKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAG 225
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +EYL  +  IHRD                                 L A N L+  +   
Sbjct: 226 MEYLESKCCIHRD---------------------------------LAARNCLVTEKNVL 252
Query: 121 KLADFGVAGQLTDTM-AKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K++DFG++ +  D + A    +   P  W APE +    Y   +D+WS GI   E  + G
Sbjct: 253 KISDFGMSREEADGVXAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLG 312
Query: 178 KPPYGDI 184
             PY ++
Sbjct: 313 ASPYPNL 319

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 37/241 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M     P +V  + ++  + ++ ++ E+   G + + +      +SEDE    +    KG
Sbjct: 208 MSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKG 267
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L ++H    +H D+K  +                         +F  K  N L       
Sbjct: 268 LCHMHENNYVHLDLKPEN------------------------IMFTTKRSNEL------- 296
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG+   L D         GT  + APEV +        DMWS+G+ +  +  G  P
Sbjct: 297 KLIDFGLTAHL-DPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSP 355
Query: 181 YG---DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           +G   D   +R +         S       + +  DF+ + L+ +P  R T  + L H +
Sbjct: 356 FGGENDDETLRNVKSCDWNMDDSAFSG--ISEDGKDFIRKLLLADPNTRMTIHQALEHPW 413
Query: 238 I 238
           +
Sbjct: 414 L 414

>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396 Length = 287

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 43/243 (17%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLS---EDEIATILCDTLKGLEYL 64
           +VV+Y+ ++ ++  + I  EYC  GS++D +    + +S   E E+  +L    +GL Y+
Sbjct: 70  HVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYI 129
Query: 65  HLRRKIHRDIKAG----SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           H    +H DIK      S T + +       + +  +N   K +F               
Sbjct: 130 HSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASN---KVMF--------------- 171
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV--ADMWSLGITAL--EMAE 176
           K+ D G   +++    +     G   ++A EV+QE  Y  +  AD+++L +T +    AE
Sbjct: 172 KIGDLGHVTRISSPQVEE----GDSRFLANEVLQE-NYTHLPKADIFALALTVVCAAGAE 226
Query: 177 GKPPYGDI-HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
             P  GD  H +R       + P   R P V + EF + +   +  +PE R +A  ++ H
Sbjct: 227 PLPRNGDQWHEIRQ-----GRLP---RIPQVLSQEFTELLKVMIHPDPERRPSAMALVKH 278
Query: 236 EFI 238
             +
Sbjct: 279 SVL 281

>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839 Length = 287

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 43/243 (17%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLS---EDEIATILCDTLKGLEYL 64
           +VV+Y+ ++ ++  + I  EYC  GS++D +    + +S   E E+  +L    +GL Y+
Sbjct: 70  HVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYI 129
Query: 65  HLRRKIHRDIKAG----SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           H    +H DIK      S T + +       + +  +N   K +F               
Sbjct: 130 HSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASN---KVMF--------------- 171
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV--ADMWSLGITAL--EMAE 176
           K+ D G   +++    +     G   ++A EV+QE  Y  +  AD+++L +T +    AE
Sbjct: 172 KIGDLGHVTRISSPQVEE----GDSRFLANEVLQE-NYTHLPKADIFALALTVVCAAGAE 226
Query: 177 GKPPYGDI-HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
             P  GD  H +R       + P   R P V + EF + +   +  +PE R +A  ++ H
Sbjct: 227 PLPRNGDQWHEIRQ-----GRLP---RIPQVLSQEFTELLKVMIHPDPERRPSAMALVKH 278
Query: 236 EFI 238
             +
Sbjct: 279 SVL 281

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK-TLSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 70  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 128
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 129 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 155
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 156 CKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 215
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 216 RIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 264

>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed With Inhibitor Pd0407824 Length = 289

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 43/243 (17%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLS---EDEIATILCDTLKGLEYL 64
           +VV+Y+ ++ ++  + I  EYC  GS++D +    + +S   E E+  +L    +GL Y+
Sbjct: 72  HVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYI 131
Query: 65  HLRRKIHRDIKAG----SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           H    +H DIK      S T + +       + +  +N   K +F               
Sbjct: 132 HSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASN---KVMF--------------- 173
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV--ADMWSLGITAL--EMAE 176
           K+ D G   +++    +     G   ++A EV+QE  Y  +  AD+++L +T +    AE
Sbjct: 174 KIGDLGHVTRISSPQVEE----GDSRFLANEVLQE-NYTHLPKADIFALALTVVCAAGAE 228
Query: 177 GKPPYGDI-HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
             P  GD  H +R       + P   R P V + EF + +   +  +PE R +A  ++ H
Sbjct: 229 PLPRNGDQWHEIRQ-----GRLP---RIPQVLSQEFTELLKVMIHPDPERRPSAMALVKH 280
Query: 236 EFI 238
             +
Sbjct: 281 SVL 283

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 37/241 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M     P +V  + ++  + ++ ++ E+   G + + +      +SEDE    +    KG
Sbjct: 102 MSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKG 161
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L ++H    +H D+K  +                         +F  K  N L       
Sbjct: 162 LCHMHENNYVHLDLKPEN------------------------IMFTTKRSNEL------- 190
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG+   L D         GT  + APEV +        DMWS+G+ +  +  G  P
Sbjct: 191 KLIDFGLTAHL-DPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSP 249
Query: 181 YG---DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           +G   D   +R +         S       + +  DF+ + L+ +P  R T  + L H +
Sbjct: 250 FGGENDDETLRNVKSCDWNMDDSAFSG--ISEDGKDFIRKLLLADPNTRMTIHQALEHPW 307
Query: 238 I 238
           +
Sbjct: 308 L 308

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK-TLSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 68  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 126
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 127 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 153
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 154 CKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 213
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 214 RIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 262

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 98/257 (38%), Gaps = 77/257 (29%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A ++S ++++    L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYIVMELMDA-NLSQVIQME---LDHERMSYLLYQMLVGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 152 --------------------------LKPSNIVVKSDATLKILDFGLA-RTAGTSFMMTP 184
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPTKP 197
            + T ++ APEVI  +GY    D+WS+G    EM +G    P    I     +      P
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244
Query: 198 PPSFRE-------------------------PDVWTP-----------EFIDFVSRCLVK 221
            P F +                         PDV  P           +  D +S+ LV 
Sbjct: 245 SPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVI 304
Query: 222 NPEERATASEMLNHEFI 238
           +  +R +  E L H +I
Sbjct: 305 DASKRISVDEALQHPYI 321

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 62  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 120
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 121 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 147
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 148 CKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 207
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 208 RIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 256

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 58/246 (23%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIA 51
           P ++   G+      L++ +EY   G++ D +R  +                TLS  ++ 
Sbjct: 76  PNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL 135
Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
               D  +G++YL  ++ IHRD                                 L A N
Sbjct: 136 HFAADVARGMDYLSQKQFIHRD---------------------------------LAARN 162
Query: 112 ILLNTEGHAKLADFGVA-GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGIT 170
           IL+     AK+ADFG++ GQ  +   K+        WMA E +    Y   +D+WS G+ 
Sbjct: 163 ILVGENYVAKIADFGLSRGQ--EVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVL 220
Query: 171 ALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERA 227
             E+   G  PY  +        +  K P  +R  +P     E  D + +C  + P ER 
Sbjct: 221 LWEIVSLGGTPYCGM----TCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERP 276
Query: 228 TASEML 233
           + +++L
Sbjct: 277 SFAQIL 282

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 71  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 129
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 130 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 156
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 157 CKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 216
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 217 RIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 265

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 50/216 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSE-DEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++I+ E+   GS+ D ++  + +     ++        +G+ ++  R  IHRD       
Sbjct: 257 IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRD------- 309
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL++     K+ADFG+A  + D       
Sbjct: 310 --------------------------LRAANILVSASLVCKIADFGLARVIEDNEYTARE 343
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPY-GDIHP--MRAI---FM 192
               P  W APE I    +   +D+WS GI  +E+   G+ PY G  +P  +RA+   + 
Sbjct: 344 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYR 403
Query: 193 IPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
           +P         P+    E  + + RC    PEER T
Sbjct: 404 MP--------RPENCPEELYNIMMRCWKNRPEERPT 431

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 64  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 122
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 123 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 149
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 150 CKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 209
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 210 RIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 258

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 58/246 (23%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIA 51
           P ++   G+      L++ +EY   G++ D +R  +                TLS  ++ 
Sbjct: 86  PNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL 145
Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
               D  +G++YL  ++ IHRD                                 L A N
Sbjct: 146 HFAADVARGMDYLSQKQFIHRD---------------------------------LAARN 172
Query: 112 ILLNTEGHAKLADFGVA-GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGIT 170
           IL+     AK+ADFG++ GQ  +   K+        WMA E +    Y   +D+WS G+ 
Sbjct: 173 ILVGENYVAKIADFGLSRGQ--EVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVL 230
Query: 171 ALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERA 227
             E+   G  PY  +        +  K P  +R  +P     E  D + +C  + P ER 
Sbjct: 231 LWEIVSLGGTPYCGM----TCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERP 286
Query: 228 TASEML 233
           + +++L
Sbjct: 287 SFAQIL 292

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 62  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 120
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 121 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 147
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 148 CKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 207
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 208 RIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 256

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 40/172 (23%)
Query: 8   YVVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           +++KY G      +  L +VMEY   GS+ D   L + ++   ++        +G+ YLH
Sbjct: 77  HIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDY--LPRHSIGLAQLLLFAQQICEGMAYLH 134
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +  IHR+                                 L A N+LL+ +   K+ DF
Sbjct: 135 AQHYIHRN---------------------------------LAARNVLLDNDRLVKIGDF 161
Query: 126 GVAGQLTDTMAK---RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           G+A  + +       R       FW APE ++E  +   +D+WS G+T  E+
Sbjct: 162 GLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYEL 213

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 63  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 121
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 122 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 148
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 149 CKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 208
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 209 RIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 257

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 57  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 115
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 116 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 142
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 143 CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 202
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 203 RIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 251

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK-TLSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 72  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 130
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 131 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 157
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 158 CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 217
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 218 RIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 266

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 98/257 (38%), Gaps = 77/257 (29%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A ++S ++++    L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYIVMELMDA-NLSQVIQME---LDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 152 --------------------------LKPSNIVVKSDATLKILDFGLA-RTAGTSFMMTP 184
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPTKP 197
            + T ++ APEVI  +GY    D+WS+G    EM +G    P    I     +      P
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244
Query: 198 PPSFRE-------------------------PDVWTP-----------EFIDFVSRCLVK 221
            P F +                         PDV  P           +  D +S+ LV 
Sbjct: 245 SPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVI 304
Query: 222 NPEERATASEMLNHEFI 238
           +  +R +  E L H +I
Sbjct: 305 DASKRISVDEALQHPYI 321

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 68  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 126
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 127 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 153
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 154 CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 213
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 214 RIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 262

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 96/250 (38%), Gaps = 41/250 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D P++V+  G     T + +V +    G + + +   K  +    +        KG
Sbjct: 71  MASMDHPHLVRLLGVCLSPT-IQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKG 129
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ +  H 
Sbjct: 130 MMYLEERRLVHRD---------------------------------LAARNVLVKSPNHV 156
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + N   G  P  WMA E I    +   +D+WS G+T  E M  G
Sbjct: 157 KITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFG 216
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
             PY  I P R I  +  K      +P + T +    + +C + + + R    E L  EF
Sbjct: 217 GKPYDGI-PTREIPDLLEK-GERLPQPPICTIDVYMVMVKCWMIDADSRPKFKE-LAAEF 273
Query: 238 IQRHDTDPSQ 247
             R   DP +
Sbjct: 274 -SRMARDPQR 282

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 96/250 (38%), Gaps = 41/250 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D P++V+  G     T + +V +    G + + +   K  +    +        KG
Sbjct: 94  MASMDHPHLVRLLGVCLSPT-IQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKG 152
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ +  H 
Sbjct: 153 MMYLEERRLVHRD---------------------------------LAARNVLVKSPNHV 179
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + N   G  P  WMA E I    +   +D+WS G+T  E M  G
Sbjct: 180 KITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFG 239
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
             PY  I P R I  +  K      +P + T +    + +C + + + R    E L  EF
Sbjct: 240 GKPYDGI-PTREIPDLLEK-GERLPQPPICTIDVYMVMVKCWMIDADSRPKFKE-LAAEF 296
Query: 238 IQRHDTDPSQ 247
             R   DP +
Sbjct: 297 -SRMARDPQR 305

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 40/172 (23%)
Query: 8   YVVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           +++KY G      +  L +VMEY   GS+ D   L + ++   ++        +G+ YLH
Sbjct: 77  HIIKYKGCCEDQGEKSLQLVMEYVPLGSLRDY--LPRHSIGLAQLLLFAQQICEGMAYLH 134
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +  IHR+                                 L A N+LL+ +   K+ DF
Sbjct: 135 SQHYIHRN---------------------------------LAARNVLLDNDRLVKIGDF 161
Query: 126 GVAGQLTDTMAK---RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           G+A  + +       R       FW APE ++E  +   +D+WS G+T  E+
Sbjct: 162 GLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYEL 213

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 98/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++ Y   G++ + +R R+               + ++  ++ + 
Sbjct: 103 IINLLGACTQDGPLYVIVAYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 162
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 163 TYQLARGMEYLASQKCIHRD---------------------------------LAARNVL 189
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      K+ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 190 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 249
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 250 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK 307
Query: 231 EML 233
           +++
Sbjct: 308 QLV 310

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 67  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 125
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 126 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 152
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 153 CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 212
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 213 RIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 261

>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In Complex With Adp Length = 432

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 104/252 (41%), Gaps = 58/252 (23%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           + P V++Y+ +       +I +E C A ++ + +  +       E  T+L  T  GL +L
Sbjct: 76  EHPNVIRYFCTEKDRQFQYIAIELCAA-TLQEYVEQKDFAHLGLEPITLLQQTTSGLAHL 134
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL---NTEGHAK 121
           H    +HRD                                 LK  NIL+   N  G  K
Sbjct: 135 HSLNIVHRD---------------------------------LKPHNILISMPNAHGKIK 161
Query: 122 --LADFGVAGQLT---DTMAKRNTVIGTPFWMAPEVIQEIGYDC------VADMWSLG-I 169
             ++DFG+  +L     + ++R+ V GT  W+APE++ E   DC        D++S G +
Sbjct: 162 AMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSE---DCKENPTYTVDIFSAGCV 218
Query: 170 TALEMAEGKPPYGDIHPMRAIFMIPTKPPPSF---REPDVWTPEFIDFVSRCLVKNPEER 226
               ++EG  P+G     +A  ++           +  DV   E I+   + +  +P++R
Sbjct: 219 FYYVISEGSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIE---KMIAMDPQKR 275
Query: 227 ATASEMLNHEFI 238
            +A  +L H F 
Sbjct: 276 PSAKHVLKHPFF 287

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 89/240 (37%), Gaps = 56/240 (23%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL-- 58
           M+      +V+ Y    K   ++I+ E+   GS+ D ++        DE   +L   L  
Sbjct: 61  MKTLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLK-------SDEGGKVLLPKLID 113
Query: 59  ------KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
                 +G+ Y+  +  IHRD                                 L+A N+
Sbjct: 114 FSAQIAEGMAYIERKNYIHRD---------------------------------LRAANV 140
Query: 113 LLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITA 171
           L++     K+ADFG+A  + D           P  W APE I    +   +++WS GI  
Sbjct: 141 LVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSNVWSFGILL 200
Query: 172 LEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWT--PEFIDFVSRCLVKNPEERAT 228
            E+   GK PY    P R    + +     +R P +     E  D +  C  +  EER T
Sbjct: 201 YEIVTYGKIPY----PGRTNADVMSALSQGYRMPRMENCPDELYDIMKMCWKEKAEERPT 256

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 62  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 120
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 121 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 147
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 148 CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 207
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 208 RIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 256

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 98/257 (38%), Gaps = 77/257 (29%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A ++S ++++    L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYIVMELMDA-NLSQVIQME---LDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 152 --------------------------LKPSNIVVKSDATLKILDFGLARTAGTSFMMTPY 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPTKP 197
           V+ T ++ APEVI  +GY    D+WS+G    EM +G    P    I     +      P
Sbjct: 186 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244
Query: 198 PPSFRE-------------------------PDVWTP-----------EFIDFVSRCLVK 221
            P F +                         PDV  P           +  D +S+ LV 
Sbjct: 245 SPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVI 304
Query: 222 NPEERATASEMLNHEFI 238
           +  +R +  E L H +I
Sbjct: 305 DASKRISVDEALQHPYI 321

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 88/218 (40%), Gaps = 54/218 (24%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL---CDTLKGLEYLHLRRKIHRDIKAGS 78
           ++I+ E+   GS+ D   L+    S+  +  ++       +G+ ++  R  IHRD     
Sbjct: 84  IYIITEFMAKGSLLDF--LKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRD----- 136
Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR 138
                                       L+A NIL++     K+ADFG+A  + D     
Sbjct: 137 ----------------------------LRAANILVSASLVCKIADFGLARVIEDNEYTA 168
Query: 139 NTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPY-GDIHP--MRAI--- 190
                 P  W APE I    +   +D+WS GI  +E+   G+ PY G  +P  +RA+   
Sbjct: 169 REGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERG 228
Query: 191 FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
           + +P         P+    E  + + RC    PEER T
Sbjct: 229 YRMP--------RPENCPEELYNIMMRCWKNRPEERPT 258

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 96/249 (38%), Gaps = 46/249 (18%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSE--------DEIATILCDTL 58
           +VV+  G   K     +VME    G +   +R LR +  +          E+  +  +  
Sbjct: 81  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 140
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+ YL+ ++ +HRD+ A +  + +D      I    +T  IY+T +  K G  LL    
Sbjct: 141 DGMAYLNAKKFVHRDLAARNCMVAHDFT--VKIGDFGMTRDIYETAYYRKGGKGLLPVR- 197
Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
                                       WMAPE +++  +   +DMWS G+   E+    
Sbjct: 198 ----------------------------WMAPESLKDGVFTTSSDMWSFGVVLWEITSLA 229
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           + PY  +   + +  +         +PD       D +  C   NP+ R T  E++N   
Sbjct: 230 EQPYQGLSNEQVLKFVMDG--GYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVN--- 284
Query: 238 IQRHDTDPS 246
           + + D  PS
Sbjct: 285 LLKDDLHPS 293

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 33/160 (20%)
Query: 24  IVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
           + MEYC  G +   +   +    L E  I T+L D    L YLH  R IHRD+K      
Sbjct: 96  LAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPE---- 151
Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTV 141
                       N++     + L                K+ D G A +L D        
Sbjct: 152 ------------NIVLQPGPQRLIH--------------KIIDLGYAKEL-DQGELCTEF 184
Query: 142 IGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           +GT  ++APE++++  Y    D WS G  A E   G  P+
Sbjct: 185 VGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPF 224

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 62/160 (38%), Gaps = 33/160 (20%)
Query: 24  IVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
           + MEYC  G +   +   +    L E  I T+L D    L YLH  R IHRD+K      
Sbjct: 95  LAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPE---- 150
Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTV 141
                       N++     + L                K+ D G A +L D        
Sbjct: 151 ------------NIVLQPGPQRLIH--------------KIIDLGYAKEL-DQGELCTEF 183
Query: 142 IGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           +GT  ++APE++++  Y    D WS G  A E   G  P+
Sbjct: 184 VGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPF 223

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 98/243 (40%), Gaps = 53/243 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           ++   G+  ++  L++++ Y   G++ + +R R+               + ++  ++ + 
Sbjct: 103 IINLLGACTQDGPLYVIVGYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSC 162
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+EYL  ++ IHRD                                 L A N+L
Sbjct: 163 TYQLARGMEYLASQKCIHRD---------------------------------LAARNVL 189
Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITA 171
           +      K+ADFG+A  + +    + T  G  P  WMAPE + +  Y   +D+WS G+  
Sbjct: 190 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLM 249
Query: 172 LEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
            E+   G  PY  I P+  +F +  K      +P   T E    +  C    P +R T  
Sbjct: 250 WEIFTLGGSPYPGI-PVEELFKL-LKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFK 307
Query: 231 EML 233
           +++
Sbjct: 308 QLV 310

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 99/250 (39%), Gaps = 41/250 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M    SPYV +  G    +T + +V +    G + D +R  +  L   ++        KG
Sbjct: 73  MAGVGSPYVSRLLGICLTST-VQLVTQLMPYGCLLDHVRENRGRLGSQDLLNWCMQIAKG 131
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL   R +HRD                                 L A N+L+ +  H 
Sbjct: 132 MSYLEDVRLVHRD---------------------------------LAARNVLVKSPNHV 158
Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    +   +D+WS G+T  E M  G
Sbjct: 159 KITDFGLARLLDIDETEYHADGGKVPIKWMALESILRRRFTHQSDVWSYGVTVWELMTFG 218
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
             PY  I P R I  +  K      +P + T +    + +C + + E R    E+++ EF
Sbjct: 219 AKPYDGI-PAREIPDLLEK-GERLPQPPICTIDVYMIMVKCWMIDSECRPRFRELVS-EF 275
Query: 238 IQRHDTDPSQ 247
             R   DP +
Sbjct: 276 -SRMARDPQR 284

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 40/172 (23%)
Query: 9   VVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G   ++    + ++ME+  +GS+ + +   K  ++  +         KG++YL  
Sbjct: 85  IVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGS 144
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ +HRD                                 L A N+L+ +E   K+ DFG
Sbjct: 145 RQYVHRD---------------------------------LAARNVLVESEHQVKIGDFG 171
Query: 127 VAGQLTDTMAKRNTVIG---TP-FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   + +T  +  TV     +P FW APE + +  +   +D+WS G+T  E+
Sbjct: 172 LTKAI-ETDKEXXTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHEL 222

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 40/172 (23%)
Query: 9   VVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           +VKY G   ++    + ++ME+  +GS+ + +   K  ++  +         KG++YL  
Sbjct: 73  IVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGS 132
Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           R+ +HRD                                 L A N+L+ +E   K+ DFG
Sbjct: 133 RQYVHRD---------------------------------LAARNVLVESEHQVKIGDFG 159
Query: 127 VAGQLTDTMAKRNTVIG---TP-FWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +   + +T  +  TV     +P FW APE + +  +   +D+WS G+T  E+
Sbjct: 160 LTKAI-ETDKEXXTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHEL 210

>pdb|3FBV|A Chain A, Crystal Structure Of The Oligomer Formed By The Kinase-Ribonuclease Domain Of Ire1 Length = 448

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 47/252 (18%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIA--------TILCD 56
           D P V++YY S   +  L+I +E C   ++ D++    K +S++ +         ++L  
Sbjct: 85  DHPNVIRYYCSETTDRFLYIALELCNL-NLQDLVE--SKNVSDENLKLQKEYNPISLLRQ 141
Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
              G+ +LH  + IHRD+K                      N +  T  R  A       
Sbjct: 142 IASGVAHLHSLKIIHRDLKP--------------------QNILVSTSSRFTADQQTGAE 181
Query: 117 EGHAKLADFGVAGQLTDTMA----KRNTVIGTPFWMAPEVIQEIGYDCVA---DMWSLG- 168
                ++DFG+  +L           N   GT  W APE+++E     +    D++S+G 
Sbjct: 182 NLRILISDFGLCKKLDSGQXXFRXNLNNPSGTSGWRAPELLEESTKRRLTRSIDIFSMGC 241
Query: 169 ITALEMAEGKPPYGDIHP-----MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           +    +++GK P+GD +      +R IF +        R       E  D +S+ +  +P
Sbjct: 242 VFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRS---LIAEATDLISQMIDHDP 298
Query: 224 EERATASEMLNH 235
            +R TA ++L H
Sbjct: 299 LKRPTAMKVLRH 310

>pdb|3SDJ|A Chain A, Structure Of Rnase-Inactive Point Mutant Of Oligomeric KinaseRNASE Ire1 Length = 448

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 47/252 (18%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIA--------TILCD 56
           D P V++YY S   +  L+I +E C   ++ D++    K +S++ +         ++L  
Sbjct: 85  DHPNVIRYYCSETTDRFLYIALELCNL-NLQDLVE--SKNVSDENLKLQKEYNPISLLRQ 141
Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
              G+ +LH  + IHRD+K                      N +  T  R  A       
Sbjct: 142 IASGVAHLHSLKIIHRDLKP--------------------QNILVSTSSRFTADQQTGAE 181
Query: 117 EGHAKLADFGVAGQLTDTMA----KRNTVIGTPFWMAPEVIQEIGYDCVA---DMWSLG- 168
                ++DFG+  +L           N   GT  W APE+++E     +    D++S+G 
Sbjct: 182 NLRILISDFGLCKKLDSGQXXFRXNLNNPSGTSGWRAPELLEESTKRRLTRSIDIFSMGC 241
Query: 169 ITALEMAEGKPPYGDIHP-----MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           +    +++GK P+GD +      +R IF +        R       E  D +S+ +  +P
Sbjct: 242 VFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRS---LIAEATDLISQMIDHDP 298
Query: 224 EERATASEMLNH 235
            +R TA ++L H
Sbjct: 299 LKRPTAMKVLRH 310

>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g Length = 316

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 98/249 (39%), Gaps = 65/249 (26%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
            ++V E    GS+   +  +++  +E E + ++ D    L++LH +   HRD        
Sbjct: 86  FYLVFEKMRGGSILSHIH-KRRHFNELEASVVVQDVASALDFLHNKGIAHRD-------- 136
Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL---NTEGHAKLADFGVAGQLT------ 132
                                    LK  NIL    N     K+ DFG+   +       
Sbjct: 137 -------------------------LKPENILCEHPNQVSPVKICDFGLGSGIKLNGDCS 171
Query: 133 -DTMAKRNTVIGTPFWMAPEVIQEIG-----YDCVADMWSLGITALEMAEGKPPY----- 181
             +  +  T  G+  +MAPEV++        YD   D+WSLG+    +  G PP+     
Sbjct: 172 PISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCG 231
Query: 182 -------GDIHPMRAIFMIPTKPPPSFREPDV-W---TPEFIDFVSRCLVKNPEERATAS 230
                  G+  P     +  +     +  PD  W   +    D +S+ LV++ ++R +A+
Sbjct: 232 SDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAA 291
Query: 231 EMLNHEFIQ 239
           ++L H ++Q
Sbjct: 292 QVLQHPWVQ 300

>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone Morp Protein Receptor Type-1b (Bmpr1b) In Complex With Fkbp12 An 193189 Length = 337

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 104/252 (41%), Gaps = 65/252 (25%)
Query: 10  VKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRK 69
           +K  GS+   T L+++ +Y   GS+ D   L+  TL    +  +   ++ GL +LH    
Sbjct: 101 IKGTGSW---TQLYLITDYHENGSLYDY--LKSTTLDAKSMLKLAYSSVSGLCHLHT--- 152
Query: 70  IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAG 129
              +I +  G       D                   LK+ NIL+   G   +AD G+A 
Sbjct: 153 ---EIFSTQGKPAIAHRD-------------------LKSKNILVKKNGTCCIADLGLAV 190
Query: 130 Q-LTDTMAKR---NTVIGTPFWMAPEVIQE------IGYDCVADMWSLGITALEMA---- 175
           + ++DT       NT +GT  +M PEV+ E           +ADM+S G+   E+A    
Sbjct: 191 KFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCV 250
Query: 176 ------EGKPPYGDIHP-------MRAIFMIPTKPPPSFREPDVWTP-----EFIDFVSR 217
                 E + PY D+ P       MR I  I  K  PSF  P+ W+      +    ++ 
Sbjct: 251 SGGIVEEYQLPYHDLVPSDPSYEDMREIVCI-KKLRPSF--PNRWSSDECLRQMGKLMTE 307
Query: 218 CLVKNPEERATA 229
           C   NP  R TA
Sbjct: 308 CWAHNPASRLTA 319

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 98/238 (41%), Gaps = 30/238 (12%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           +V   G+      + ++ EYC  G + + +R + + L  D    I   T    + LH   
Sbjct: 112 IVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSS 171
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH-AKLADFGV 127
           ++ +             + + + K     N I++ +    A N+LL T GH AK+ DFG+
Sbjct: 172 QVAQG------------MAFLASK-----NCIHRDV---AARNVLL-TNGHVAKIGDFGL 210
Query: 128 AGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGD 183
           A  +   ++ + K N  +    WMAPE I +  Y   +D+WS GI   E+ + G  PY  
Sbjct: 211 ARDIMNDSNYIVKGNARLPVK-WMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPG 269
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH 241
           I  + + F    K      +P          +  C    P  R T  ++ +  F+Q  
Sbjct: 270 I-LVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICS--FLQEQ 324

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 96/249 (38%), Gaps = 46/249 (18%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSE--------DEIATILCDTL 58
           +VV+  G   K     +VME    G +   +R LR +  +          E+  +  +  
Sbjct: 80  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 139
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+ YL+ ++ +HRD+ A +  + +D      I    +T  IY+T +  K G  LL    
Sbjct: 140 DGMAYLNAKKFVHRDLAARNCMVAHDFT--VKIGDFGMTRDIYETDYYRKGGKGLLPVR- 196
Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
                                       WMAPE +++  +   +DMWS G+   E+    
Sbjct: 197 ----------------------------WMAPESLKDGVFTTSSDMWSFGVVLWEITSLA 228
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           + PY  +   + +  +         +PD       D +  C   NP+ R T  E++N   
Sbjct: 229 EQPYQGLSNEQVLKFVMDG--GYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVN--- 283
Query: 238 IQRHDTDPS 246
           + + D  PS
Sbjct: 284 LLKDDLHPS 292

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 98/257 (38%), Gaps = 77/257 (29%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A ++S ++++    L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYIVMELMDA-NLSQVIQME---LDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 152 --------------------------LKPSNIVVKSDCTLKILDFGLA-RTAGTSFMMTP 184
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPTKP 197
            + T ++ APEVI  +GY    D+WS+G    EM +G    P    I     +      P
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244
Query: 198 PPSFRE-------------------------PDVWTP-----------EFIDFVSRCLVK 221
            P F +                         PDV  P           +  D +S+ LV 
Sbjct: 245 SPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVI 304
Query: 222 NPEERATASEMLNHEFI 238
           +  +R +  E L H +I
Sbjct: 305 DASKRISVDEALQHPYI 321

>pdb|2RIO|A Chain A, Structure Of The Dual Enzyme Ire1 Reveals The Basis For Catalysis And Regulation Of Non-conventional Splicing Length = 434

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 106/256 (41%), Gaps = 51/256 (19%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIA--------TILCD 56
           D P V++YY S   +  L+I +E C   ++ D++    K +S++ +         ++L  
Sbjct: 67  DHPNVIRYYCSETTDRFLYIALELCNL-NLQDLV--ESKNVSDENLKLQKEYNPISLLRQ 123
Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
              G+ +LH  + IHRD+K                      N +  T  R  A       
Sbjct: 124 IASGVAHLHSLKIIHRDLKP--------------------QNILVSTSSRFTADQQTGAE 163
Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVI----GTPFWMAPEVIQEIG-------YDCVADMW 165
                ++DFG+  +L    +   T +    GT  W APE+++E              D++
Sbjct: 164 NLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIF 223
Query: 166 SLG-ITALEMAEGKPPYGDIHP-----MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCL 219
           S+G +    +++GK P+GD +      +R IF +        R       E  D +S+ +
Sbjct: 224 SMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRS---LIAEATDLISQMI 280
Query: 220 VKNPEERATASEMLNH 235
             +P +R TA ++L H
Sbjct: 281 DHDPLKRPTAMKVLRH 296

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 43/233 (18%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           M+Q     +V+ Y +      ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 58  MKQLQHQRLVRLY-AVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 116
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHR+                                 L+A NIL++    
Sbjct: 117 GMAFIEERNYIHRN---------------------------------LRAANILVSDTLS 143
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 144 CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 203
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   PD    E    +  C  + PE+R T
Sbjct: 204 RIPYPGMTNPEVIQNLER----GYRMVRPDNCPEELYQLMRLCWKERPEDRPT 252

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 96/249 (38%), Gaps = 46/249 (18%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSE--------DEIATILCDTL 58
           +VV+  G   K     +VME    G +   +R LR +  +          E+  +  +  
Sbjct: 81  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 140
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+ YL+ ++ +HRD+ A +  + +D      I    +T  IY+T +  K G  LL    
Sbjct: 141 DGMAYLNAKKFVHRDLAARNCMVAHDFT--VKIGDFGMTRDIYETDYYRKGGKGLLPVR- 197
Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
                                       WMAPE +++  +   +DMWS G+   E+    
Sbjct: 198 ----------------------------WMAPESLKDGVFTTSSDMWSFGVVLWEITSLA 229
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           + PY  +   + +  +         +PD       D +  C   NP+ R T  E++N   
Sbjct: 230 EQPYQGLSNEQVLKFVMDG--GYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVN--- 284
Query: 238 IQRHDTDPS 246
           + + D  PS
Sbjct: 285 LLKDDLHPS 293

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 83/217 (38%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV+EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 87  IYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 139
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 140 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEXTARQ 173
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 233
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K+PEER T
Sbjct: 234 MPCPPE---------CPESLHDLMCQCWRKDPEERPT 261

>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From Cryptosporidium Parvum, Cgd7_40 Length = 345

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 105/267 (39%), Gaps = 39/267 (14%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL----RKKTLSEDEIATILCD 56
           M++   P + + Y  Y     + +VME C  G + D + +         + D + T +C 
Sbjct: 82  MKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICP 141
Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITN---QIYKTLFRL------ 107
                       + + +   GS     + LD+   +  +I+N   QI+  L  L      
Sbjct: 142 C----------PECNEEAINGSIHGFRESLDFVQ-REKLISNIMRQIFSALHYLHNQGIC 190
Query: 108 ----KAGNILLNTEG--HAKLADFGVAGQL----TDTMAKRNTVIGTPFWMAPEVIQEIG 157
               K  N L +T      KL DFG++ +             T  GTP+++APEV+    
Sbjct: 191 HRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTN 250
Query: 158 --YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREP--DVWTPEFID 213
             Y    D WS G+    +  G  P+  ++    I  +  K    F  P  +V +P   D
Sbjct: 251 ESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNK-KLCFENPNYNVLSPLARD 309
Query: 214 FVSRCLVKNPEERATASEMLNHEFIQR 240
            +S  L +N +ER  A   L H +I +
Sbjct: 310 LLSNLLNRNVDERFDAMRALQHPWISQ 336

>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 6 (Mapk6) Length = 320

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 99/257 (38%), Gaps = 68/257 (26%)
Query: 14  GSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRD 73
           GS  +   ++IV EY     ++++  L +  L E+     +   L+GL+Y+H    +HRD
Sbjct: 89  GSLTELNSVYIVQEYMET-DLANV--LEQGPLLEEHARLFMYQLLRGLKYIHSANVLHRD 145
Query: 74  IKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA-KLADFGVAGQLT 132
                                            LK  N+ +NTE    K+ DFG+A  + 
Sbjct: 146 ---------------------------------LKPANLFINTEDLVLKIGDFGLARIMD 172
Query: 133 DTMAKRNTV---IGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR 188
              + +  +   + T ++ +P ++     Y    DMW+ G    EM  GK  +   H + 
Sbjct: 173 PHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELE 232
Query: 189 AIFMIPTKPP--------------PSFREPDVWTP-------------EFIDFVSRCLVK 221
            + +I    P              P +   D+  P             E +DF+ + L  
Sbjct: 233 QMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTF 292
Query: 222 NPEERATASEMLNHEFI 238
           +P +R TA E L+H ++
Sbjct: 293 SPMDRLTAEEALSHPYM 309

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 102/257 (39%), Gaps = 77/257 (29%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++    L  + ++ +L   L G+++LH    IHRD       
Sbjct: 101 DVYLVMELMDA----NLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 149
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A   +        
Sbjct: 150 --------------------------LKPSNIVVKSDCTLKILDFGLARTASTNFMMTPY 183
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY-GDIHPMR----------- 188
           V+ T ++ APEVI  +GY    D+WS+G    E+ +G   + G  H  +           
Sbjct: 184 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTP 242
Query: 189 -AIFMI-------------PTKPPPSFRE--PD-----------VWTPEFIDFVSRCLVK 221
            A FM              P  P  +F E  PD           + T +  D +S+ LV 
Sbjct: 243 SAEFMAALQPTVRNYVENRPAYPGIAFEELFPDWIFPSESERDKIKTSQARDLLSKMLVI 302
Query: 222 NPEERATASEMLNHEFI 238
           +P++R +  E L H +I
Sbjct: 303 DPDKRISVDEALRHPYI 319

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG++YL  ++ +HRD          
Sbjct: 104 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRD---------- 153
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 154 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT 190
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 191 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 249
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 250 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 284

>pdb|3MY0|A Chain A, Crystal Structure Of The Acvrl1 (Alk1) Kinase Domain Bound To Ldn- 193189 Length = 305

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 56/240 (23%)
Query: 19  NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS 78
           +T LW++  Y   GS+ D   L+++TL       +      GL +LH+      +I    
Sbjct: 78  STQLWLITHYHEHGSLYDF--LQRQTLEPHLALRLAVSAACGLAHLHV------EIFGTQ 129
Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA---GQLTDTM 135
           G       D+                   K+ N+L+ +     +AD G+A    Q +D +
Sbjct: 130 GKPAIAHRDF-------------------KSRNVLVKSNLQCCIADLGLAVMHSQGSDYL 170
Query: 136 -AKRNTVIGTPFWMAPEVIQE-IGYDCV-----ADMWSLGITALEMA----------EGK 178
               N  +GT  +MAPEV+ E I  DC       D+W+ G+   E+A          + +
Sbjct: 171 DIGNNPRVGTKRYMAPEVLDEQIRTDCFESYKWTDIWAFGLVLWEIARRTIVNGIVEDYR 230
Query: 179 PPYGDIHP-------MRAIFMIPTKPP--PSFREPDVWTPEFIDFVSRCLVKNPEERATA 229
           PP+ D+ P       M+ +  +  + P  P+    D         +  C   NP  R TA
Sbjct: 231 PPFYDVVPNDPSFEDMKKVVCVDQQTPTIPNRLAADPVLSGLAQMMRECWYPNPSARLTA 290

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG++YL  ++ +HRD          
Sbjct: 109 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRD---------- 158
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 159 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT 195
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 196 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 254
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 255 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 289

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I++E+   G++ D +R   ++ +S   +  +      
Sbjct: 61  MKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 120
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 121 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 147
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 148 VKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 207
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I P +   ++  +       P+    +  + +  C   NP +R + +E+
Sbjct: 208 MSPYPGIDPSQVYELL--EKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 260

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG++YL  ++ +HRD          
Sbjct: 108 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRD---------- 157
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 158 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT 194
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 195 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 253
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 254 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 288

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG++YL  ++ +HRD          
Sbjct: 101 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRD---------- 150
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 151 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT 187
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 188 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 246
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 247 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 281

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 50/251 (19%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSE--------DEIATILCDTL 58
           +VV+  G   K     +VME    G +   +R LR +  +          E+  +  +  
Sbjct: 78  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 137
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+ YL+ ++ +HRD+ A +  + +D                    F +K G        
Sbjct: 138 DGMAYLNAKKFVHRDLAARNCMVAHD--------------------FTVKIG-------- 169
Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITALEMAE 176
                DFG+   + +T   R    G  P  WMAPE +++  +   +DMWS G+   E+  
Sbjct: 170 -----DFGMTRDIXETDXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 224
Query: 177 -GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
             + PY  +   + +  +         +PD       D +  C   NP+ R T  E++N 
Sbjct: 225 LAEQPYQGLSNEQVLKFVMDG--GYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVN- 281
Query: 236 EFIQRHDTDPS 246
             + + D  PS
Sbjct: 282 --LLKDDLHPS 290

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG++YL  ++ +HRD          
Sbjct: 109 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRD---------- 158
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 159 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT 195
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 196 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 254
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 255 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 289

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG++YL  ++ +HRD          
Sbjct: 106 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRD---------- 155
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 156 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT 192
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 193 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 251
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 252 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 286

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 83/217 (38%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV+EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 87  IYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 139
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 140 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEYTARQ 173
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 233
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K+PEER T
Sbjct: 234 MPCPPE---------CPESLHDLMCQCWRKDPEERPT 261

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG++YL  ++ +HRD          
Sbjct: 108 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRD---------- 157
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTD---TMAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 158 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKT 194
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 195 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 253
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 254 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 288

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 50/251 (19%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSE--------DEIATILCDTL 58
           +VV+  G   K     +VME    G +   +R LR +  +          E+  +  +  
Sbjct: 81  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 140
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+ YL+ ++ +HRD+ A +  + +D                    F +K G        
Sbjct: 141 DGMAYLNAKKFVHRDLAARNCMVAHD--------------------FTVKIG-------- 172
Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITALEMAE 176
                DFG+   + +T   R    G  P  WMAPE +++  +   +DMWS G+   E+  
Sbjct: 173 -----DFGMTRDIXETDXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 227
Query: 177 -GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
             + PY  +   + +  +         +PD       D +  C   NP+ R T  E++N 
Sbjct: 228 LAEQPYQGLSNEQVLKFVMDG--GYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVN- 284
Query: 236 EFIQRHDTDPS 246
             + + D  PS
Sbjct: 285 --LLKDDLHPS 293

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 98/266 (36%), Gaps = 70/266 (26%)
Query: 1   MQQCDSPYVVKYYGSYF-------------KNTDLWIVMEYCGAGSVSDIMRLRKKTLSE 47
           +   +  YVV+YY ++              K + L+I  EYC   ++ D++         
Sbjct: 56  LASLNHQYVVRYYAAWLERRNFVKPXTAVKKKSTLFIQXEYCENRTLYDLIHSENLNQQR 115
Query: 48  DEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRL 107
           DE   +    L+ L Y+H +  IHR+                                 L
Sbjct: 116 DEYWRLFRQILEALSYIHSQGIIHRN---------------------------------L 142
Query: 108 KAGNILLNTEGHAKLADFGVAGQLTDTM--------------AKRNTVIGTPFWMAPEVI 153
           K  NI ++   + K+ DFG+A  +  ++                  + IGT  ++A EV+
Sbjct: 143 KPXNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAXYVATEVL 202
Query: 154 QEIG-YDCVADMWSLGITALE----MAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWT 208
              G Y+   D +SLGI   E     + G      +  +R+   +  + PP F +     
Sbjct: 203 DGTGHYNEKIDXYSLGIIFFEXIYPFSTGXERVNILKKLRS---VSIEFPPDFDDNKXKV 259
Query: 209 PEFIDFVSRCLVKNPEERATASEMLN 234
            + I  +   +  +P +R  A  +LN
Sbjct: 260 EKKI--IRLLIDHDPNKRPGARTLLN 283

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG++YL  ++ +HRD          
Sbjct: 107 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRD---------- 156
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 157 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT 193
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 194 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 252
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 253 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 287

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG++YL  ++ +HRD          
Sbjct: 128 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRD---------- 177
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 178 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT 214
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 215 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 273
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 274 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 308

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG++YL  ++ +HRD          
Sbjct: 127 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRD---------- 176
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 177 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKT 213
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 214 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 272
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 273 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 307

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 96/257 (37%), Gaps = 77/257 (29%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYIVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 152 --------------------------LKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPY 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK---PPYGDIHPMRAIFMIPTKP 197
           V+ T ++ APEVI  +GY    D+WS+G    EM +G    P    I     +      P
Sbjct: 186 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 244
Query: 198 PPSFRE-------------------------PDVWTP-----------EFIDFVSRCLVK 221
            P F +                         PDV  P           +  D +S+ LV 
Sbjct: 245 SPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVI 304
Query: 222 NPEERATASEMLNHEFI 238
           +  +R +  E L H +I
Sbjct: 305 DASKRISVDEALQHPYI 321

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 81/217 (37%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 253 IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 305
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 306 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEYTARQ 339
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 340 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 399
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K PEER T
Sbjct: 400 MPCPPE---------CPESLHDLMCQCWRKEPEERPT 427

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IVMEY   G + D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 87  IYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 139
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 140 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEYTARQ 173
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 233
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K+PEER T
Sbjct: 234 MPCPPE---------CPESLHDLMCQCWRKDPEERPT 261

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 64/218 (29%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSE-DEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++I+ E+   GS+ D ++  + +     ++        +G+ ++  R  IHRD       
Sbjct: 251 IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRD------- 303
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL++     K+ADFG+A            
Sbjct: 304 --------------------------LRAANILVSASLVCKIADFGLAR----------- 326
Query: 141 VIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPY-GDIHP--MRAI--- 190
            +G  F   W APE I    +   +D+WS GI  +E+   G+ PY G  +P  +RA+   
Sbjct: 327 -VGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERG 385
Query: 191 FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
           + +P         P+    E  + + RC    PEER T
Sbjct: 386 YRMP--------RPENCPEELYNIMMRCWKNRPEERPT 415

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 97/251 (38%), Gaps = 50/251 (19%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSE--------DEIATILCDTL 58
           +VV+  G   K     +VME    G +   +R LR +  +          E+  +  +  
Sbjct: 81  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 140
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+ YL+ ++ +HRD+ A +  + +D                    F +K G        
Sbjct: 141 DGMAYLNAKKFVHRDLAARNCMVAHD--------------------FTVKIG-------- 172
Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITALEMAE 176
                DFG+   + +T   R    G  P  WMAPE +++  +   +DMWS G+   E+  
Sbjct: 173 -----DFGMTRDIXETDXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITS 227
Query: 177 -GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
             + PY  +   + +  +         +PD       D +  C   NP  R T  E++N 
Sbjct: 228 LAEQPYQGLSNEQVLKFVMDG--GYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLEIVN- 284
Query: 236 EFIQRHDTDPS 246
             + + D  PS
Sbjct: 285 --LLKDDLHPS 293

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 81/217 (37%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 253 IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 305
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 306 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEYTARQ 339
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 340 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 399
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K PEER T
Sbjct: 400 MPCPPE---------CPESLHDLMCQCWRKEPEERPT 427

>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine- Phosphorylation-Regulated Kinase 1a Length = 382

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 107 LKAGNILL-NTEGHA-KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM 164
           LK  NILL N +  A K+ DFG + QL   + +    I + F+ +PEV+  + YD   DM
Sbjct: 185 LKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQ---XIQSRFYRSPEVLLGMPYDLAIDM 241
Query: 165 WSLGITALEMAEGKPPY---GDIHPMRAIFMIPTKPP 198
           WSLG   +EM  G+P +    ++  M  I  +   PP
Sbjct: 242 WSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP 278

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 38/157 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYIVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 152 --------------------------LKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPE 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           V+ T ++ APEVI  +GY    D+WS+G    EM +G
Sbjct: 186 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKG 221

>pdb|3KGA|A Chain A, Crystal Structure Of Mapkap Kinase 2 (Mk2) Complexed With A Potent 3-Aminopyrazole Atp Site Inhibitor Length = 299

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 94/258 (36%), Gaps = 72/258 (27%)
Query: 3   QCDSPYVVK----YYGSYFKNTDLWIVMEYCGAGSV-SDIMRLRKKTLSEDEIATILCDT 57
           QC  P++V+    Y   Y     L IVME    G + S I     +  +E E + I+   
Sbjct: 69  QC--PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSI 126
Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
            + ++YLH     HRD+K        + L Y S + N I                     
Sbjct: 127 GEAIQYLHSINIAHRDVKP-------ENLLYTSKRPNAI--------------------- 158
Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              KL DFG A + T                         YD   DMWSLG+    +  G
Sbjct: 159 --LKLTDFGFAKETTGE----------------------KYDKSCDMWSLGVIMYILLCG 194
Query: 178 KPPYGDIHPMRAIFMIPTK--------PPPSFREPDVWTPEFIDFVSRCLVKN-PEERAT 228
            PP+   H +     + T+        P P + E      E +  + R L+K  P +R T
Sbjct: 195 YPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSE----VSEEVKMLIRNLLKTEPTQRMT 250
Query: 229 ASEMLNHEFIQRHDTDPS 246
            +E +NH +I +    P 
Sbjct: 251 ITEFMNHPWIMQSTKVPQ 268

>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41 Length = 382

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 107 LKAGNILL-NTEGHA-KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM 164
           LK  NILL N +  A K+ DFG + QL   + +    I + F+ +PEV+  + YD   DM
Sbjct: 185 LKPENILLCNPKRXAIKIVDFGSSCQLGQRIYQ---XIQSRFYRSPEVLLGMPYDLAIDM 241
Query: 165 WSLGITALEMAEGKPPY---GDIHPMRAIFMIPTKPP 198
           WSLG   +EM  G+P +    ++  M  I  +   PP
Sbjct: 242 WSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP 278

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 96  DVYLVMELMDA----NLXQVIQMELDHERMSYLLYQMLXGIKHLHSAGIIHRD------- 144
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 145 --------------------------LKPSNIVVKSDXTLKILDFGLA-RTAGTSFMMTP 177
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
            + T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 178 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 215

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYLVMELMDA----NLXQVIQMELDHERMSYLLYQMLXGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 152 --------------------------LKPSNIVVKSDXTLKILDFGLA-RTAGTSFMMTP 184
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
            + T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 222

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 78  IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 130
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 131 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEYTARQ 164
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 165 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 224
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K+PEER T
Sbjct: 225 MPCPPE---------CPESLHDLMCQCWRKDPEERPT 252

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 87  IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 139
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 140 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEYTARQ 173
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 233
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K+PEER T
Sbjct: 234 MPCPPE---------CPESLHDLMCQCWRKDPEERPT 261

>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX Length = 368

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 107 LKAGNILL-NTEGHA-KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM 164
           LK  NILL N +  A K+ DFG + QL   + +    I + F+ +PEV+  + YD   DM
Sbjct: 166 LKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQ---XIQSRFYRSPEVLLGMPYDLAIDM 222
Query: 165 WSLGITALEMAEGKPPY---GDIHPMRAIFMIPTKPP 198
           WSLG   +EM  G+P +    ++  M  I  +   PP
Sbjct: 223 WSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP 259

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYLVMELMDA----NLXQVIQMELDHERMSYLLYQMLXGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 152 --------------------------LKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPY 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           V+ T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 186 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 222

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 40/172 (23%)
Query: 8   YVVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           ++VKY G      +  + +VMEY   GS+ D   L +  +   ++        +G+ YLH
Sbjct: 72  HIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDY--LPRHCVGLAQLLLFAQQICEGMAYLH 129
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +  IHR                                  L A N+LL+ +   K+ DF
Sbjct: 130 AQHYIHRA---------------------------------LAARNVLLDNDRLVKIGDF 156
Query: 126 GVAGQLTDTMAK---RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           G+A  + +       R       FW APE ++E  +   +D+WS G+T  E+
Sbjct: 157 GLAKAVPEGHEYYRVREDGDSPVFWYAPECLKECKFYYASDVWSFGVTLYEL 208

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 42/185 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTL 58
           M +C    +V+  G      DL +V  Y   GS+ D +     T  LS      I     
Sbjct: 84  MAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAA 143
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+ +LH    IHRDIK+                                  NILL+   
Sbjct: 144 NGINFLHENHHIHRDIKSA---------------------------------NILLDEAF 170
Query: 119 HAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQ-EIGYDCVADMWSLGITALEM 174
            AK++DFG+A + ++  A+    + ++GT  +MAPE ++ EI     +D++S G+  LE+
Sbjct: 171 TAKISDFGLA-RASEKFAQTVMXSRIVGTTAYMAPEALRGEITPK--SDIYSFGVVLLEI 227
Query: 175 AEGKP 179
             G P
Sbjct: 228 ITGLP 232

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 40/172 (23%)
Query: 8   YVVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           ++VKY G      +  + +VMEY   GS+ D   L +  +   ++        +G+ YLH
Sbjct: 71  HIVKYKGCCEDQGEKSVQLVMEYVPLGSLRDY--LPRHCVGLAQLLLFAQQICEGMAYLH 128
Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
            +  IHR                                  L A N+LL+ +   K+ DF
Sbjct: 129 AQHYIHRA---------------------------------LAARNVLLDNDRLVKIGDF 155
Query: 126 GVAGQLTDTMAK---RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           G+A  + +       R       FW APE ++E  +   +D+WS G+T  E+
Sbjct: 156 GLAKAVPEGHEYYRVREDGDSPVFWYAPECLKECKFYYASDVWSFGVTLYEL 207

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 76  IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 128
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 129 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEYTARQ 162
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 163 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 222
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K+PEER T
Sbjct: 223 MPCPPE---------CPESLHDLMCQCWRKDPEERPT 250

>pdb|3LJ0|A Chain A, Ire1 Complexed With Adp And Quercetin Length = 434

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 104/256 (40%), Gaps = 51/256 (19%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIA--------TILCD 56
           D P V++YY S   +  L+I +E C   ++ D++    K +S++ +         ++L  
Sbjct: 67  DHPNVIRYYCSETTDRFLYIALELCNL-NLQDLVE--SKNVSDENLKLQKEYNPISLLRQ 123
Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
              G+ +LH  + IHRD+K                      N +  T  R  A       
Sbjct: 124 IASGVAHLHSLKIIHRDLKP--------------------QNILVSTSSRFTADQQTGAE 163
Query: 117 EGHAKLADFGVAGQLTDTMA----KRNTVIGTPFWMAPEVIQEIG-------YDCVADMW 165
                ++DFG+  +L           N   GT  W APE+++E              D++
Sbjct: 164 NLRILISDFGLCKKLDSGQXXFRXNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIF 223
Query: 166 SLG-ITALEMAEGKPPYGDIHP-----MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCL 219
           S+G +    +++GK P+GD +      +R IF +        R       E  D +S+ +
Sbjct: 224 SMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRS---LIAEATDLISQMI 280
Query: 220 VKNPEERATASEMLNH 235
             +P +R TA ++L H
Sbjct: 281 DHDPLKRPTAMKVLRH 296

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 87  IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 139
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 140 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEYTARQ 173
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 233
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K+PEER T
Sbjct: 234 MPCPPE---------CPESLHDLMCQCWRKDPEERPT 261

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 81/217 (37%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 336 IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 388
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 389 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEYTARQ 422
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 423 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 482
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K PEER T
Sbjct: 483 MPCPPE---------CPESLHDLMCQCWRKEPEERPT 510

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 81/217 (37%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 80  IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 132
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 133 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEYTARQ 166
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 167 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 226
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K PEER T
Sbjct: 227 MPCPPE---------CPESLHDLMCQCWRKEPEERPT 254

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 38/157 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYIVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 152 --------------------------LKPSNIVVKSDCTLKILDFGLA-RTAGTSFMMTP 184
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
            + T ++ APEVI  +GY    D+WS+G    EM +G
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKG 221

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 91/235 (38%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ +S   +  +      
Sbjct: 61  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 120
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 121 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 147
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 148 VKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 207
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I P +   ++  +       P+    +  + +  C   NP +R + +E+
Sbjct: 208 MSPYPGIDPSQVYELL--EKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 260

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 38/157 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 104 DVYIVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 152
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 153 --------------------------LKPSNIVVKSDCTLKILDFGLA-RTAGTSFMMTP 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
            + T ++ APEVI  +GY    D+WS+G    EM +G
Sbjct: 186 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKG 222

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 87  IYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 139
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 140 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEYTARQ 173
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 233
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K+PEER T
Sbjct: 234 MPCPPE---------CPESLHDLMCQCWRKDPEERPT 261

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 81/217 (37%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 253 IYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 305
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+A  + D       
Sbjct: 306 --------------------------LRAANILVGENLVCKVADFGLARLIEDNEYTARQ 339
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 340 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 399
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K PEER T
Sbjct: 400 MPCPPE---------CPESLHDLMCQCWRKEPEERPT 427

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 34/186 (18%)
Query: 54  LCDTLKGL--EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
           L D LKG   +YL L + +    +  SG    +R++Y                  L+A N
Sbjct: 96  LLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRD--------------LRAAN 141
Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGIT 170
           IL+      K+ADFG+A  + D           P  W APE      +   +D+WS GI 
Sbjct: 142 ILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGIL 201
Query: 171 ALEM-AEGKPPYGDIHPMRAI------FMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKN 222
             E+  +G+ PY  +     +      + +P  P           PE + D + +C  K 
Sbjct: 202 LTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE---------CPESLHDLMCQCWRKE 252
Query: 223 PEERAT 228
           PEER T
Sbjct: 253 PEERPT 258

>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase Domain Of The Human Epidermal Growth Factor Receptor 3 (Her3) Length = 325

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 94/246 (38%), Gaps = 41/246 (16%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D  ++V+  G     + L +V +Y   GS+ D +R  +  L    +        KG+ YL
Sbjct: 73  DHAHIVRLLG-LCPGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYL 131
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
                +HR+                                 L A N+LL +    ++AD
Sbjct: 132 EEHGMVHRN---------------------------------LAARNVLLKSPSQVQVAD 158
Query: 125 FGVAGQLT-DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPY 181
           FGVA  L  D      +   TP  WMA E I    Y   +D+WS G+T  E M  G  PY
Sbjct: 159 FGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPY 218
Query: 182 GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH 241
             +       ++  +      +P + T +    + +C + +   R T  E+ N EF  R 
Sbjct: 219 AGLRLAEVPDLL--EKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELAN-EFT-RM 274
Query: 242 DTDPSQ 247
             DP +
Sbjct: 275 ARDPPR 280

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 66  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 124 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 150
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 151 ATVFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 66  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 124 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 150
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 151 ATVFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 34/186 (18%)
Query: 54  LCDTLKGL--EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
           L D LKG   +YL L + +    +  SG    +R++Y                  L+A N
Sbjct: 96  LLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRD--------------LRAAN 141
Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGIT 170
           IL+      K+ADFG+A  + D           P  W APE      +   +D+WS GI 
Sbjct: 142 ILVGENLVCKVADFGLARLIEDNEWTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGIL 201
Query: 171 ALEM-AEGKPPYGDIHPMRAI------FMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKN 222
             E+  +G+ PY  +     +      + +P  P           PE + D + +C  K 
Sbjct: 202 LTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE---------CPESLHDLMCQCWRKE 252
Query: 223 PEERAT 228
           PEER T
Sbjct: 253 PEERPT 258

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 66  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 124 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 150
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 151 ATVFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 91/235 (38%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ +S   +  +      
Sbjct: 61  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 120
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 121 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 147
Query: 120 AKLADFGVAGQLT-DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T DT            W APE +    +   +D+W+ G+   E+A  G
Sbjct: 148 VKVADFGLSRLMTGDTFTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 207
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I P +   ++  +       P+    +  + +  C   NP +R + +E+
Sbjct: 208 MSPYPGIDPSQVYELL--EKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 260

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 67  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 124
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 125 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 151
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 152 ATVFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 66  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 124 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 150
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 151 ATVFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 66  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 124 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 150
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 151 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 42/185 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTL 58
           M +C    +V+  G      DL +V  Y   GS+ D +     T  LS      I     
Sbjct: 78  MAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAA 137
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+ +LH    IHRDIK+                                  NILL+   
Sbjct: 138 NGINFLHENHHIHRDIKSA---------------------------------NILLDEAF 164
Query: 119 HAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQ-EIGYDCVADMWSLGITALEM 174
            AK++DFG+A + ++  A+      ++GT  +MAPE ++ EI     +D++S G+  LE+
Sbjct: 165 TAKISDFGLA-RASEKFAQXVMXXRIVGTTAYMAPEALRGEITPK--SDIYSFGVVLLEI 221
Query: 175 AEGKP 179
             G P
Sbjct: 222 ITGLP 226

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG+++L  ++ +HRD          
Sbjct: 107 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRD---------- 156
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 157 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKT 193
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 194 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 252
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 253 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 287

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 67  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 124
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 125 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 151
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 152 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 34/186 (18%)
Query: 54  LCDTLKGL--EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
           L D LKG   +YL L + +    +  SG    +R++Y                  L+A N
Sbjct: 89  LLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD--------------LRAAN 134
Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGIT 170
           IL+      K+ADFG+A  + D           P  W APE      +   +D+WS GI 
Sbjct: 135 ILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGIL 194
Query: 171 ALEM-AEGKPPYGDIHPMRAI------FMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKN 222
             E+  +G+ PY  +     +      + +P  P           PE + D + +C  K 
Sbjct: 195 LTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE---------CPESLHDLMCQCWRKE 245
Query: 223 PEERAT 228
           PEER T
Sbjct: 246 PEERPT 251

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG+++L  ++ +HRD          
Sbjct: 109 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRD---------- 158
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 159 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKT 195
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 196 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 254
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 255 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 289

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 66  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 124 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 150
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 151 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 76/186 (40%), Gaps = 34/186 (18%)
Query: 54  LCDTLKGL--EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
           L D LKG   +YL L + +    +  SG    +R++Y                  L+A N
Sbjct: 99  LLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD--------------LRAAN 144
Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGIT 170
           IL+      K+ADFG+A  + D           P  W APE      +   +D+WS GI 
Sbjct: 145 ILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGIL 204
Query: 171 ALEM-AEGKPPYGDIHPMRAI------FMIPTKPPPSFREPDVWTPEFI-DFVSRCLVKN 222
             E+  +G+ PY  +     +      + +P  P           PE + D + +C  K+
Sbjct: 205 LTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPE---------CPESLHDLMCQCWRKD 255
Query: 223 PEERAT 228
           PEER T
Sbjct: 256 PEERPT 261

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 122
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 123 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 149
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 150 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 206

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 35/175 (20%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q+   P ++    ++   +++ +V ++     +  I++     L+   I   +  TL+G
Sbjct: 66  LQELSHPNIIGLLDAFGHKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQG 124
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH    +HRD                                 LK  N+LL+  G  
Sbjct: 125 LEYLHQHWILHRD---------------------------------LKPNNLLLDENGVL 151
Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEM 174
           KLADFG+A             + T ++ APE++     Y    DMW++G    E+
Sbjct: 152 KLADFGLAKSFGSPNRAYXHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAEL 206

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG+++L  ++ +HRD          
Sbjct: 109 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRD---------- 158
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 159 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKT 195
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 196 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 254
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 255 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 289

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 66  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 124 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 150
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 151 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG+++L  ++ +HRD          
Sbjct: 110 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRD---------- 159
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 160 -----------------------LAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKT 196
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 197 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 255
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 256 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 290

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 95/249 (38%), Gaps = 46/249 (18%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSE--------DEIATILCDTL 58
           +VV+  G   K     +VME    G +   +R LR +  +          E+  +  +  
Sbjct: 81  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 140
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+ YL+ ++ +HR++ A +  + +D      I    +T  IY+T +  K G  LL    
Sbjct: 141 DGMAYLNAKKFVHRNLAARNCMVAHDFT--VKIGDFGMTRDIYETDYYRKGGKGLLPVR- 197
Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
                                       WMAPE +++  +   +DMWS G+   E+    
Sbjct: 198 ----------------------------WMAPESLKDGVFTTSSDMWSFGVVLWEITSLA 229
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           + PY  +   + +  +         +PD       D +  C   NP  R T  E++N   
Sbjct: 230 EQPYQGLSNEQVLKFVMDG--GYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLEIVN--- 284
Query: 238 IQRHDTDPS 246
           + + D  PS
Sbjct: 285 LLKDDLHPS 293

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 66  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 124 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 150
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 151 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 67  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 124
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 125 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 151
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 152 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 66  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 124 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 150
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 151 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG+++L  ++ +HRD          
Sbjct: 110 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRD---------- 159
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 160 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKT 196
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 197 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 255
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 256 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 290

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 95/249 (38%), Gaps = 46/249 (18%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSE--------DEIATILCDTL 58
           +VV+  G   K     +VME    G +   +R LR +  +          E+  +  +  
Sbjct: 82  HVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIA 141
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+ YL+ ++ +HR++ A +  + +D      I    +T  IY+T +  K G  LL    
Sbjct: 142 DGMAYLNAKKFVHRNLAARNCMVAHDFT--VKIGDFGMTRDIYETDYYRKGGKGLLPVR- 198
Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
                                       WMAPE +++  +   +DMWS G+   E+    
Sbjct: 199 ----------------------------WMAPESLKDGVFTTSSDMWSFGVVLWEITSLA 230
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           + PY  +   + +  +         +PD       D +  C   NP  R T  E++N   
Sbjct: 231 EQPYQGLSNEQVLKFVMDG--GYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLEIVN--- 285
Query: 238 IQRHDTDPS 246
           + + D  PS
Sbjct: 286 LLKDDLHPS 294

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 66  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 124 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 150
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 151 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 66  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 124 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 150
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 151 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex With Amp-Pnp Length = 344

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 94/246 (38%), Gaps = 41/246 (16%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D  ++V+  G     + L +V +Y   GS+ D +R  +  L    +        KG+ YL
Sbjct: 91  DHAHIVRLLG-LCPGSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYL 149
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
                +HR+                                 L A N+LL +    ++AD
Sbjct: 150 EEHGMVHRN---------------------------------LAARNVLLKSPSQVQVAD 176
Query: 125 FGVAGQLT-DTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPY 181
           FGVA  L  D      +   TP  WMA E I    Y   +D+WS G+T  E M  G  PY
Sbjct: 177 FGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPY 236
Query: 182 GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH 241
             +       ++  +      +P + T +    + +C + +   R T  E+ N EF  R 
Sbjct: 237 AGLRLAEVPDLL--EKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELAN-EFT-RM 292
Query: 242 DTDPSQ 247
             DP +
Sbjct: 293 ARDPPR 298

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 66  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 123
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 124 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 150
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 151 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 207

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 67  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 124
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 125 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 151
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 152 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 67  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 124
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 125 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 151
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 152 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 67  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 124
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 125 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 151
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 152 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 67  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 124
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 125 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 151
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 152 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 42/185 (22%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTL 58
           M +C    +V+  G      DL +V  Y   GS+ D +     T  LS      I     
Sbjct: 84  MAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAA 143
Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            G+ +LH    IHRDIK+                                  NILL+   
Sbjct: 144 NGINFLHENHHIHRDIKSA---------------------------------NILLDEAF 170
Query: 119 HAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQ-EIGYDCVADMWSLGITALEM 174
            AK++DFG+A + ++  A+      ++GT  +MAPE ++ EI     +D++S G+  LE+
Sbjct: 171 TAKISDFGLA-RASEKFAQTVMXXRIVGTTAYMAPEALRGEITPK--SDIYSFGVVLLEI 227
Query: 175 AEGKP 179
             G P
Sbjct: 228 ITGLP 232

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 38/157 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 105 DVYIVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 153
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 154 --------------------------LKPSNIVVKSDCTLKILDFGLARTAGTSFMMVPF 187
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           V+ T ++ APEVI  +GY    D+WS+G    EM +G
Sbjct: 188 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKG 223

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG+++L  ++ +HRD          
Sbjct: 114 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRD---------- 163
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 164 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKT 200
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 201 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 259
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 260 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 294

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 100/257 (38%), Gaps = 77/257 (29%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++    L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYLVMELMDA----NLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A            
Sbjct: 152 --------------------------LKPSNIVVKSDCTLKILDFGLARTACTNFMMTPY 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY-GDIHPMR----------- 188
           V+ T ++ APEVI  +GY    D+WS+G    E+ +G   + G  H  +           
Sbjct: 186 VV-TRYYRAPEVILGMGYAANVDIWSVGCIMGELVKGCVIFQGTDHIDQWNKVIEQLGTP 244
Query: 189 -AIFMIPTKPP-------------------------PSFREPD-VWTPEFIDFVSRCLVK 221
            A FM   +P                          PS  E D + T +  D +S+ LV 
Sbjct: 245 SAEFMAALQPTVRNYVENRPKYPGIKFEELFPDWIFPSESERDKIKTSQARDLLSKMLVI 304
Query: 222 NPEERATASEMLNHEFI 238
           +P++R +  E L H +I
Sbjct: 305 DPDKRISVDEALRHPYI 321

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLR 67
           VVK+YG   +    ++ +EYC  G + D  R+     + E +        + G+ YLH  
Sbjct: 67  VVKFYGHRREGNIQYLFLEYCSGGELFD--RIEPDIGMPEPDAQRFFHQLMAGVVYLHGI 124
Query: 68  RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGV 127
              HRDI                                 K  N+LL+   + K++DFG+
Sbjct: 125 GITHRDI---------------------------------KPENLLLDERDNLKISDFGL 151
Query: 128 AGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEMAEGKPPY 181
           A        +R  N + GT  ++APE+++   +     D+WS GI    M  G+ P+
Sbjct: 152 ATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPW 208

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 81/217 (37%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 254 IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 306
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L+A NIL+      K+ADFG+   + D       
Sbjct: 307 --------------------------LRAANILVGENLVCKVADFGLGRLIEDNEYTARQ 340
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 341 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 400
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K+PEER T
Sbjct: 401 MPCPPE---------CPESLHDLMCQCWRKDPEERPT 428

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           +V+ Y   G + + +R      +  ++        KG+++L  ++ +HRD          
Sbjct: 168 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRD---------- 217
Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNT 140
                                  L A N +L+ +   K+ADFG+A  + D         T
Sbjct: 218 -----------------------LAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKT 254
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGKPPYGDIHPMR-AIFMIPTKP 197
               P  WMA E +Q   +   +D+WS G+   E M  G PPY D++     ++++  + 
Sbjct: 255 GAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGR- 313
Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
                +P+       + + +C     E R + SE+++
Sbjct: 314 --RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 348

>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain Length = 316

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 97/249 (38%), Gaps = 65/249 (26%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
            ++V E    GS+   +  +++  +E E + ++ D    L++LH +   HRD        
Sbjct: 86  FYLVFEKMRGGSILSHIH-KRRHFNELEASVVVQDVASALDFLHNKGIAHRD-------- 136
Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL---NTEGHAKLADFGVAGQLT------ 132
                                    LK  NIL    N     K+ DF +   +       
Sbjct: 137 -------------------------LKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCS 171
Query: 133 -DTMAKRNTVIGTPFWMAPEVIQEIG-----YDCVADMWSLGITALEMAEGKPPY----- 181
             +  +  T  G+  +MAPEV++        YD   D+WSLG+    +  G PP+     
Sbjct: 172 PISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCG 231
Query: 182 -------GDIHPMRAIFMIPTKPPPSFREPDV-W---TPEFIDFVSRCLVKNPEERATAS 230
                  G+  P     +  +     +  PD  W   +    D +S+ LV++ ++R +A+
Sbjct: 232 SDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAA 291
Query: 231 EMLNHEFIQ 239
           ++L H ++Q
Sbjct: 292 QVLQHPWVQ 300

>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor Length = 275

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 85/232 (36%), Gaps = 39/232 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D   +++ YG       + +V E    GS+ D +R  +       ++       +G
Sbjct: 65  MHSLDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEG 123
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  +R IHRD                                 L A N+LL T    
Sbjct: 124 MGYLESKRFIHRD---------------------------------LAARNLLLATRDLV 150
Query: 121 KLADFGVAGQL--TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K+ DFG+   L   D           PF W APE ++   +   +D W  G+T  EM   
Sbjct: 151 KIGDFGLMRALPQNDDHXVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTY 210
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
           G+ P+  ++  + +  I  K       P+    +  + + +C    PE+R T
Sbjct: 211 GQEPWIGLNGSQILHKI-DKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPT 261

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 81/217 (37%), Gaps = 52/217 (23%)
Query: 22  LWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    K L   ++  +      G+ Y+     +HRD       
Sbjct: 87  IYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRD------- 139
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L A NIL+      K+ADFG+A  + D       
Sbjct: 140 --------------------------LAAANILVGENLVCKVADFGLARLIEDNEYTARQ 173
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAI------FM 192
               P  W APE      +   +D+WS GI   E+  +G+ PY  +     +      + 
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR 233
Query: 193 IPTKPPPSFREPDVWTPEFI-DFVSRCLVKNPEERAT 228
           +P  P           PE + D + +C  K+PEER T
Sbjct: 234 MPCPPE---------CPESLHDLMCQCWRKDPEERPT 261

>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And Unphosphorylated Kinase Domains Of The Cdc42-Associated Tyrosine Kinase Ack1 Bound To Amp-Pcp Length = 291

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 85/232 (36%), Gaps = 39/232 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D   +++ YG       + +V E    GS+ D +R  +       ++       +G
Sbjct: 75  MHSLDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEG 133
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  +R IHRD                                 L A N+LL T    
Sbjct: 134 MGYLESKRFIHRD---------------------------------LAARNLLLATRDLV 160
Query: 121 KLADFGVAGQL--TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K+ DFG+   L   D           PF W APE ++   +   +D W  G+T  EM   
Sbjct: 161 KIGDFGLMRALPQNDDHXVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTY 220
Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
           G+ P+  ++  + +  I  K       P+    +  + + +C    PE+R T
Sbjct: 221 GQEPWIGLNGSQILHKI-DKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPT 271

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 38/155 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYIVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 152 --------------------------LKPSNIVVKSDCTLKILDFGLARTAGTSFMMEPE 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
           V+ T ++ APEVI  +GY    D+WS+G    EM 
Sbjct: 186 VV-TRYYRAPEVILGMGYKENVDLWSVGCIMGEMV 219

>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain Length = 277

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 45/235 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D   +++ YG       + +V E    GS+ D +R  +       ++       +G
Sbjct: 69  MHSLDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEG 127
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  +R IHRD                                 L A N+LL T    
Sbjct: 128 MGYLESKRFIHRD---------------------------------LAARNLLLATRDLV 154
Query: 121 KLADFGVAGQLTD-----TMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM 174
           K+ DFG+   L        M +   V   PF W APE ++   +   +D W  G+T  EM
Sbjct: 155 KIGDFGLMRALPQNDDHYVMQEHRKV---PFAWCAPESLKTRTFSHASDTWMFGVTLWEM 211
Query: 175 -AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              G+ P+  ++  + +  I  K       P+    +  + + +C    PE+R T
Sbjct: 212 FTYGQEPWIGLNGSQILHKI-DKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPT 265

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYLVMELMDA----NLXQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 152 --------------------------LKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPY 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           V+ T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 186 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 222

>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal Sh3 Domain Length = 341

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 45/235 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D   +++ YG       + +V E    GS+ D +R  +       ++       +G
Sbjct: 69  MHSLDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEG 127
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  +R IHRD                                 L A N+LL T    
Sbjct: 128 MGYLESKRFIHRD---------------------------------LAARNLLLATRDLV 154
Query: 121 KLADFGVAGQLTDT-----MAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM 174
           K+ DFG+   L        M +   V   PF W APE ++   +   +D W  G+T  EM
Sbjct: 155 KIGDFGLMRALPQNDDHYVMQEHRKV---PFAWCAPESLKTRTFSHASDTWMFGVTLWEM 211
Query: 175 -AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              G+ P+  ++  + +  I  K       P+    +  + + +C    PE+R T
Sbjct: 212 FTYGQEPWIGLNGSQILHKI-DKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPT 265

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 141 DVYLVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 189
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 190 --------------------------LKPSNIVVKSDCTLKILDFGLA-RTAGTSFMMTP 222
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
            + T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 223 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 260

>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor Cis-3-[8-amino-1-(4- Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol Length = 273

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 45/235 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D   +++ YG       + +V E    GS+ D +R  +       ++       +G
Sbjct: 65  MHSLDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEG 123
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  +R IHRD                                 L A N+LL T    
Sbjct: 124 MGYLESKRFIHRD---------------------------------LAARNLLLATRDLV 150
Query: 121 KLADFGVAGQLTD-----TMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM 174
           K+ DFG+   L        M +   V   PF W APE ++   +   +D W  G+T  EM
Sbjct: 151 KIGDFGLMRALPQNDDHYVMQEHRKV---PFAWCAPESLKTRTFSHASDTWMFGVTLWEM 207
Query: 175 -AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              G+ P+  ++  + +  I  K       P+    +  + + +C    PE+R T
Sbjct: 208 FTYGQEPWIGLNGSQILHKI-DKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPT 261

>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of The Tyrosine Kinase Ack1 Length = 291

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 45/235 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D   +++ YG       + +V E    GS+ D +R  +       ++       +G
Sbjct: 75  MHSLDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEG 133
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  +R IHRD                                 L A N+LL T    
Sbjct: 134 MGYLESKRFIHRD---------------------------------LAARNLLLATRDLV 160
Query: 121 KLADFGVAGQLTD-----TMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM 174
           K+ DFG+   L        M +   V   PF W APE ++   +   +D W  G+T  EM
Sbjct: 161 KIGDFGLMRALPQNDDHYVMQEHRKV---PFAWCAPESLKTRTFSHASDTWMFGVTLWEM 217
Query: 175 -AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              G+ P+  ++  + +  I  K       P+    +  + + +C    PE+R T
Sbjct: 218 FTYGQEPWIGLNGSQILHKI-DKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPT 271

>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95 Length = 276

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 45/235 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D   +++ YG       + +V E    GS+ D +R  +       ++       +G
Sbjct: 65  MHSLDHRNLIRLYGVVL-TPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEG 123
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  +R IHRD                                 L A N+LL T    
Sbjct: 124 MGYLESKRFIHRD---------------------------------LAARNLLLATRDLV 150
Query: 121 KLADFGVAGQLTD-----TMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEM 174
           K+ DFG+   L        M +   V   PF W APE ++   +   +D W  G+T  EM
Sbjct: 151 KIGDFGLMRALPQNDDHYVMQEHRKV---PFAWCAPESLKTRTFSHASDTWMFGVTLWEM 207
Query: 175 -AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              G+ P+  ++  + +  I  K       P+    +  + + +C    PE+R T
Sbjct: 208 FTYGQEPWIGLNGSQILHKI-DKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPT 261

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 141 DVYLVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 189
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 190 --------------------------LKPSNIVVKSDCTLKILDFGLA-RTAGTSFMMTP 222
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
            + T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 223 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 260

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 38/155 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYIVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 152 --------------------------LKPSNIVVKSDCTLKILDFGLARTAGTSFMMEPE 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
           V+ T ++ APEVI  +GY    D+WS+G    EM 
Sbjct: 186 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMV 219

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 34/133 (25%)
Query: 50  IATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKA 109
           +   L   L+GL Y H ++ +HRD                                 LK 
Sbjct: 102 VKLFLFQLLRGLAYCHRQKVLHRD---------------------------------LKP 128
Query: 110 GNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEV-IQEIGYDCVADMWSLG 168
            N+L+N  G  KLADFG+A   +      +  + T ++  P++ +    Y    DMW +G
Sbjct: 129 QNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVG 188
Query: 169 ITALEMAEGKPPY 181
               EMA G+P +
Sbjct: 189 CIFYEMATGRPLF 201

>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei, Pb000659.00.0 Length = 432

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 29/185 (15%)
Query: 1   MQQCDSPYVVKYYG-----SYFKNTDLWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATI 53
           + +  S Y+++ Y         K  +L+IV+E       SD+ +L K    L+E+ I TI
Sbjct: 79  LNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD----SDLKKLFKTPIFLTEEHIKTI 134
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
           L + L G  ++H    IHRD+K  +  L  D    CS+K  V    + +T+   K  NI+
Sbjct: 135 LYNLLLGENFIHESGIIHRDLKPANCLLNQD----CSVK--VCDFGLARTINSEKDTNIV 188
Query: 114 LNTEGHAKLA--DFGVAGQLTDTMAKRNTVIGTPFWMAPEVI--QEIGYDCVADMWSLGI 169
            + E + +    +  +  QLT  +  R       ++ APE+I  QE  Y    D+WS G 
Sbjct: 189 NDLEENEEPGPHNKNLKKQLTSHVVTR-------WYRAPELILLQE-NYTKSIDIWSTGC 240
Query: 170 TALEM 174
              E+
Sbjct: 241 IFAEL 245

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 102 DVYLVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 150
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 151 --------------------------LKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPY 184
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           V+ T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 185 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 221

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 38/155 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 108 DVYIVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 156
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 157 --------------------------LKPSNIVVKSDCTLKILDFGLA-RTAGTSFMMTP 189
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
            + T ++ APEVI  +GY    D+WS+G    EM 
Sbjct: 190 YVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEMV 224

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 96  DVYLVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 144
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 145 --------------------------LKPSNIVVKSDCTLKILDFGLA-RTAGTSFMMTP 177
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
            + T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 178 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 215

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYLVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 152 --------------------------LKPSNIVVKSDXTLKILDFGLARTAGTSFMMTPY 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           V+ T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 186 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 222

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 97  DVYLVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 145
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 146 --------------------------LKPSNIVVKSDCTLKILDFGLA-RTAGTSFMMTP 178
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
            + T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 179 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 216

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 97  DVYLVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 145
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 146 --------------------------LKPSNIVVKSDCTLKILDFGLA-RTAGTSFMMTP 178
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
            + T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 179 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 216

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 38/155 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 97  DVYIVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 145
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 146 --------------------------LKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPY 179
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
           V+ T ++ APEVI  +GY    D+WS+G    EM 
Sbjct: 180 VV-TRYYRAPEVILGMGYKENVDLWSVGCIMGEMV 213

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYLVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 152 --------------------------LKPSNIVVKSDCTLKILDFGLA-RTAGTSFMMTP 184
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
            + T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 185 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 222

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 104 DVYLVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 152
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 153 --------------------------LKPSNIVVKSDCTLKILDFGLA-RTAGTSFMMTP 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
            + T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 186 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 223

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 104 DVYLVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 152
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A +   T      
Sbjct: 153 --------------------------LKPSNIVVKSDCTLKILDFGLA-RTAGTSFMMTP 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
            + T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 186 YVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 223

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 103 DVYLVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 151
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 152 --------------------------LKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPY 185
Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           V+ T ++ APEVI  +GY    D+WS+G    EM   K
Sbjct: 186 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 222

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 78/218 (35%), Gaps = 54/218 (24%)
Query: 22  LWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           ++IV EY   GS+ D ++    + L    +  +      G+ Y+     IHRD       
Sbjct: 78  IYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRD------- 130
Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     L++ NIL+      K+ADFG+A  + D       
Sbjct: 131 --------------------------LRSANILVGNGLICKIADFGLARLIEDNEXTARQ 164
Query: 141 VIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EGKPPYGDIHPMRAIFMI----- 193
               P  W APE      +   +D+WS GI   E+  +G+ PY  ++    +  +     
Sbjct: 165 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYR 224
Query: 194 ---PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              P   P S  E           +  C  K+PEER T
Sbjct: 225 MPCPQDCPISLHE----------LMIHCWKKDPEERPT 252

>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16 In Complex With Staurosporine Length = 317

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 71/179 (39%), Gaps = 58/179 (32%)
Query: 23  WIVMEYCGAGSV-SDIMRLRKKT--LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           W+++ +   G++ ++I RL+ K   L+ED+I  +L    +GLE +H +   HRD      
Sbjct: 106 WLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRD------ 159
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQ--------- 130
                                      LK  NILL  EG   L D G   Q         
Sbjct: 160 ---------------------------LKPTNILLGDEGQPVLMDLGSMNQACIHVEGSR 192
Query: 131 ----LTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV----ADMWSLGITALEMAEGKPPY 181
               L D  A+R T+     + APE+   +   CV     D+WSLG     M  G+ PY
Sbjct: 193 QALTLQDWAAQRCTIS----YRAPELF-SVQSHCVIDERTDVWSLGCVLYAMMFGEGPY 246

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 94/258 (36%), Gaps = 62/258 (24%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           +V+ +     +  L +V E+C    +          L  + + + L   LKGL + H R 
Sbjct: 63  IVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN 121
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            +HRD                                 LK  N+L+N  G  KLA+FG+A
Sbjct: 122 VLHRD---------------------------------LKPQNLLINRNGELKLANFGLA 148
Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCVADMWSLGITALEMAE-GKP--PYGDI 184
                 +   +  + T ++  P+V+     Y    DMWS G    E+A  G+P  P  D+
Sbjct: 149 RAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDV 208
Query: 185 -HPMRAIFMIPTKP-----PPSFREPDV-------WTPEFI-----------DFVSRCLV 220
              ++ IF +   P     P   + PD         T   +           D +   L 
Sbjct: 209 DDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLK 268
Query: 221 KNPEERATASEMLNHEFI 238
            NP +R +A E L H + 
Sbjct: 269 CNPVQRISAEEALQHPYF 286

>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD 163
           L A NILL      K+ DFG+A  +   ++ + K N  +    WMAPE I    Y   +D
Sbjct: 194 LAARNILLTHGRITKICDFGLARHIKNDSNYVVKGNARLPVK-WMAPESIFNCVYTFESD 252
Query: 164 MWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN 222
           +WS GI   E+ + G  PY  + P+ + F    K       P+    E  D +  C   +
Sbjct: 253 VWSYGIFLWELFSLGSSPYPGM-PVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDAD 311
Query: 223 PEERATASEMLNHEFIQRHDTDPSQN 248
           P +R T  +++  + I++  ++ + +
Sbjct: 312 PLKRPTFKQIV--QLIEKQISESTNH 335

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 58/253 (22%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATI 53
           +V   G+      + ++ EYC  G + + +R ++               + LS  ++   
Sbjct: 112 IVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKRPPGLEYSYNPSHNPEEQLSSRDLLHF 171
Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+ +L  +  IHRD+ A                                  N+L
Sbjct: 172 SSQVAQGMAFLASKNCIHRDVAAR---------------------------------NVL 198
Query: 114 LNTEGH-AKLADFGVAGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGI 169
           L T GH AK+ DFG+A  +   ++ + K N  +    WMAPE I +  Y   +D+WS GI
Sbjct: 199 L-TNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVK-WMAPESIFDCVYTVQSDVWSYGI 256
Query: 170 TALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              E+ + G  PY  I  + + F    K      +P          +  C    P  R T
Sbjct: 257 LLWEIFSLGLNPYPGIL-VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPT 315
Query: 229 ASEMLNHEFIQRH 241
             ++ +  F+Q  
Sbjct: 316 FQQICS--FLQEQ 326

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 101/257 (39%), Gaps = 80/257 (31%)
Query: 22  LWIVMEYCG---AGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS 78
           +++V ++C    AG +S++  L K TLSE  I  ++   L GL Y+H  + +HRD     
Sbjct: 100 IYLVFDFCEHDLAGLLSNV--LVKFTLSE--IKRVMQMLLNGLYYIHRNKILHRD----- 150
Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT---DTM 135
                                       +KA N+L+  +G  KLADFG+A   +   ++ 
Sbjct: 151 ----------------------------MKAANVLITRDGVLKLADFGLARAFSLAKNSQ 182
Query: 136 AKR--NTVIGTPFWMAPE-VIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM 192
             R  N V+ T ++  PE ++ E  Y    D+W  G    EM    P          + +
Sbjct: 183 PNRYXNRVV-TLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL 241
Query: 193 IPTKPPPSFREPDVW-------------------------------TPEFIDFVSRCLVK 221
           I ++   S   P+VW                                P  +D + + LV 
Sbjct: 242 I-SQLCGSI-TPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVL 299
Query: 222 NPEERATASEMLNHEFI 238
           +P +R  + + LNH+F 
Sbjct: 300 DPAQRIDSDDALNHDFF 316

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 91/258 (35%), Gaps = 62/258 (24%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           +V+ +     +  L +V E+C    +          L  + + + L   LKGL + H R 
Sbjct: 63  IVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN 121
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA 128
            +HRD                                 LK  N+L+N  G  KLADFG+A
Sbjct: 122 VLHRD---------------------------------LKPQNLLINRNGELKLADFGLA 148
Query: 129 GQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCVADMWSLGITALEMAEGKPPY---GDI 184
                 +   +  + T ++  P+V+     Y    DMWS G    E+A    P     D+
Sbjct: 149 RAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAARPLFPGNDV 208
Query: 185 -HPMRAIFMIPTKP-----PPSFREPDV-------WTPEFI-----------DFVSRCLV 220
              ++ IF +   P     P   + PD         T   +           D +   L 
Sbjct: 209 DDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLK 268
Query: 221 KNPEERATASEMLNHEFI 238
            NP +R +A E L H + 
Sbjct: 269 CNPVQRISAEEALQHPYF 286

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 101/257 (39%), Gaps = 80/257 (31%)
Query: 22  LWIVMEYCG---AGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS 78
           +++V ++C    AG +S++  L K TLSE  I  ++   L GL Y+H  + +HRD     
Sbjct: 100 IYLVFDFCEHDLAGLLSNV--LVKFTLSE--IKRVMQMLLNGLYYIHRNKILHRD----- 150
Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT---DTM 135
                                       +KA N+L+  +G  KLADFG+A   +   ++ 
Sbjct: 151 ----------------------------MKAANVLITRDGVLKLADFGLARAFSLAKNSQ 182
Query: 136 AKR--NTVIGTPFWMAPE-VIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM 192
             R  N V+ T ++  PE ++ E  Y    D+W  G    EM    P          + +
Sbjct: 183 PNRYXNRVV-TLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL 241
Query: 193 IPTKPPPSFREPDVW-------------------------------TPEFIDFVSRCLVK 221
           I ++   S   P+VW                                P  +D + + LV 
Sbjct: 242 I-SQLCGSI-TPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVL 299
Query: 222 NPEERATASEMLNHEFI 238
           +P +R  + + LNH+F 
Sbjct: 300 DPAQRIDSDDALNHDFF 316

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 101/257 (39%), Gaps = 80/257 (31%)
Query: 22  LWIVMEYCG---AGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS 78
           +++V ++C    AG +S++  L K TLSE  I  ++   L GL Y+H  + +HRD     
Sbjct: 100 IYLVFDFCEHDLAGLLSNV--LVKFTLSE--IKRVMQMLLNGLYYIHRNKILHRD----- 150
Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT---DTM 135
                                       +KA N+L+  +G  KLADFG+A   +   ++ 
Sbjct: 151 ----------------------------MKAANVLITRDGVLKLADFGLARAFSLAKNSQ 182
Query: 136 AKR--NTVIGTPFWMAPE-VIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM 192
             R  N V+ T ++  PE ++ E  Y    D+W  G    EM    P          + +
Sbjct: 183 PNRYXNRVV-TLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL 241
Query: 193 IPTKPPPSFREPDVW-------------------------------TPEFIDFVSRCLVK 221
           I ++   S   P+VW                                P  +D + + LV 
Sbjct: 242 I-SQLCGSI-TPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVL 299
Query: 222 NPEERATASEMLNHEFI 238
           +P +R  + + LNH+F 
Sbjct: 300 DPAQRIDSDDALNHDFF 316

>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C- Kit Tyrosine Kinase Length = 331

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD 163
           L A NILL      K+ DFG+A  +   ++ + K N  +    WMAPE I    Y   +D
Sbjct: 189 LAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK-WMAPESIFNCVYTFESD 247
Query: 164 MWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN 222
           +WS GI   E+ + G  PY  + P+ + F    K       P+    E  D +  C   +
Sbjct: 248 VWSYGIFLWELFSLGSSPYPGM-PVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDAD 306
Query: 223 PEERATASEMLNHEFIQRHDTDPSQN 248
           P +R T  +++  + I++  ++ + +
Sbjct: 307 PLKRPTFKQIV--QLIEKQISESTNH 330

>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571 Inhibition Of C-kit Tyrosine Kinase Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD 163
           L A NILL      K+ DFG+A  +   ++ + K N  +    WMAPE I    Y   +D
Sbjct: 171 LAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK-WMAPESIFNCVYTFESD 229
Query: 164 MWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN 222
           +WS GI   E+ + G  PY  + P+ + F    K       P+    E  D +  C   +
Sbjct: 230 VWSYGIFLWELFSLGSSPYPGM-PVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDAD 288
Query: 223 PEERATASEMLNHEFIQRHDTDPSQN 248
           P +R T  +++  + I++  ++ + +
Sbjct: 289 PLKRPTFKQIV--QLIEKQISESTNH 312

>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib Length = 336

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD 163
           L A NILL      K+ DFG+A  +   ++ + K N  +    WMAPE I    Y   +D
Sbjct: 194 LAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK-WMAPESIFNCVYTFESD 252
Query: 164 MWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN 222
           +WS GI   E+ + G  PY  + P+ + F    K       P+    E  D +  C   +
Sbjct: 253 VWSYGIFLWELFSLGSSPYPGM-PVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDAD 311
Query: 223 PEERATASEMLNHEFIQRHDTDPSQN 248
           P +R T  +++  + I++  ++ + +
Sbjct: 312 PLKRPTFKQIV--QLIEKQISESTNH 335

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 101/257 (39%), Gaps = 80/257 (31%)
Query: 22  LWIVMEYCG---AGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS 78
           +++V ++C    AG +S++  L K TLSE  I  ++   L GL Y+H  + +HRD     
Sbjct: 99  IYLVFDFCEHDLAGLLSNV--LVKFTLSE--IKRVMQMLLNGLYYIHRNKILHRD----- 149
Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT---DTM 135
                                       +KA N+L+  +G  KLADFG+A   +   ++ 
Sbjct: 150 ----------------------------MKAANVLITRDGVLKLADFGLARAFSLAKNSQ 181
Query: 136 AKR--NTVIGTPFWMAPE-VIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM 192
             R  N V+ T ++  PE ++ E  Y    D+W  G    EM    P          + +
Sbjct: 182 PNRYXNRVV-TLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLAL 240
Query: 193 IPTKPPPSFREPDVW-------------------------------TPEFIDFVSRCLVK 221
           I ++   S   P+VW                                P  +D + + LV 
Sbjct: 241 I-SQLCGSI-TPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVL 298
Query: 222 NPEERATASEMLNHEFI 238
           +P +R  + + LNH+F 
Sbjct: 299 DPAQRIDSDDALNHDFF 315

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 93/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I++E+   G++ D +R   ++ +S   +  +      
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 123 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 149
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 150 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 209
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 210 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 93/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I++E+   G++ D +R   ++ +S   +  +      
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 123 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 149
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 150 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 209
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 210 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 70/191 (36%), Gaps = 47/191 (24%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---------------KKTLSEDEIA 51
           P VV   G   K+  L ++  YC  G + + + +R               K  L   +  
Sbjct: 89  PNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFV 148
Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
            ++     G+EYL     +H+D+ A    LVYD+L+   I    +  ++Y   +    GN
Sbjct: 149 HLVAQIAAGMEYLSSHHVVHKDL-ATRNVLVYDKLN-VKISDLGLFREVYAADYYKLLGN 206
Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITA 171
            LL                                WMAPE I    +   +D+WS G+  
Sbjct: 207 SLLPIR-----------------------------WMAPEAIMYGKFSIDSDIWSYGVVL 237
Query: 172 LEM-AEGKPPY 181
            E+ + G  PY
Sbjct: 238 WEVFSYGLQPY 248

>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase (gak) Length = 337

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 99/262 (37%), Gaps = 70/262 (26%)
Query: 19  NTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLEYLHLRRK--IHRDIK 75
             +  ++ E C    V  + ++  +  LS D +  I   T + ++++H ++   IHRD  
Sbjct: 106 QAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRD-- 163
Query: 76  AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT- 134
                                          LK  N+LL+ +G  KL DFG A  ++   
Sbjct: 164 -------------------------------LKVENLLLSNQGTIKLCDFGSATTISHYP 192
Query: 135 ----MAKRNTVI-------GTPFWMAPEVIQ-----EIGYDCVADMWSLGITALEMAEGK 178
                A+R  ++        TP +  PE+I       IG     D+W+LG     +   +
Sbjct: 193 DYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEK--QDIWALGCILYLLCFRQ 250
Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN--HE 236
            P+ D   +R +    + PP      D     F   +   L  NPEER + +E+++   E
Sbjct: 251 HPFEDGAKLRIVNGKYSIPP-----HDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQE 305
Query: 237 FIQRHDTDP--------SQNGG 250
                + +P         QNGG
Sbjct: 306 IAAARNVNPKSPITELLEQNGG 327

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 42/183 (22%)
Query: 3   QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTLKG 60
           +C    +V+  G      DL +V  Y   GS+ D +     T  LS      I      G
Sbjct: 77  KCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPPLSWHXRCKIAQGAANG 136
Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + +LH    IHRDIK+                                  NILL+    A
Sbjct: 137 INFLHENHHIHRDIKSA---------------------------------NILLDEAFTA 163
Query: 121 KLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQ-EIGYDCVADMWSLGITALEMAE 176
           K++DFG+A + ++  A+    + ++GT  + APE ++ EI     +D++S G+  LE+  
Sbjct: 164 KISDFGLA-RASEKFAQXVXXSRIVGTTAYXAPEALRGEITPK--SDIYSFGVVLLEIIT 220
Query: 177 GKP 179
           G P
Sbjct: 221 GLP 223

>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex Length = 329

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD 163
           L A NILL      K+ DFG+A  +   ++ + K N  +    WMAPE I    Y   +D
Sbjct: 187 LAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVK-WMAPESIFNCVYTFESD 245
Query: 164 MWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN 222
           +WS GI   E+ + G  PY  + P+ + F    K       P+    E  D +  C   +
Sbjct: 246 VWSYGIFLWELFSLGSSPYPGM-PVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDAD 304
Query: 223 PEERATASEMLNHEFIQRHDTDPSQN 248
           P +R T  +++  + I++  ++ + +
Sbjct: 305 PLKRPTFKQIV--QLIEKQISESTNH 328

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 70/191 (36%), Gaps = 47/191 (24%)
Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---------------KKTLSEDEIA 51
           P VV   G   K+  L ++  YC  G + + + +R               K  L   +  
Sbjct: 72  PNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFV 131
Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
            ++     G+EYL     +H+D+ A    LVYD+L+   I    +  ++Y   +    GN
Sbjct: 132 HLVAQIAAGMEYLSSHHVVHKDL-ATRNVLVYDKLN-VKISDLGLFREVYAADYYKLLGN 189
Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITA 171
            LL                                WMAPE I    +   +D+WS G+  
Sbjct: 190 SLLPIR-----------------------------WMAPEAIMYGKFSIDSDIWSYGVVL 220
Query: 172 LEM-AEGKPPY 181
            E+ + G  PY
Sbjct: 221 WEVFSYGLQPY 231

>pdb|4EUT|A Chain A, Structure Of Bx-795 Complexed With Unphosphorylated Human Tbk1 Kinase- Uld Domain Length = 396

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 71/170 (41%), Gaps = 44/170 (25%)
Query: 24  IVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
           ++ME+C  GS+  ++        L E E   +L D + G+ +L     +HR+IK G    
Sbjct: 86  LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPG---- 141
Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA--KLADFGVAGQLTDTMAKRN 139
                       N++                ++  +G +  KL DFG A +L D   +  
Sbjct: 142 ------------NIMR---------------VIGEDGQSVYKLTDFGAARELEDD-EQFV 173
Query: 140 TVIGTPFWMAPEVIQ--------EIGYDCVADMWSLGITALEMAEGKPPY 181
           ++ GT  ++ P++ +        +  Y    D+WS+G+T    A G  P+
Sbjct: 174 SLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPF 223

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I++E+   G++ D +R   ++ ++   +  +      
Sbjct: 64  MKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 123
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 124 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 150
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 151 VKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 210
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 211 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 263

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 66/198 (33%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTV---------------------IGTP 145
           +K  NILLN E H K+ADFG++    +     N +                     + T 
Sbjct: 135 MKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATR 194
Query: 146 FWMAPEV-IQEIGYDCVADMWSLGITALEMAEGKPPY---------------------GD 183
           ++ APE+ +    Y    DMWSLG    E+  GKP +                      D
Sbjct: 195 WYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGVIDFPSNED 254
Query: 184 IHPMRAIF---MIPT-KPPPSFREP---DVWTP----------------EFIDFVSRCLV 220
           +  +++ F   MI + K     R+    D++T                 E +D + + L 
Sbjct: 255 VESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQ 314
Query: 221 KNPEERATASEMLNHEFI 238
            NP +R +A++ L H F+
Sbjct: 315 FNPNKRISANDALKHPFV 332

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ +S   +  +      
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 123 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 149
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 150 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 209
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 210 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 33/168 (19%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-QEIGYDCVADM 164
           +K  N+L+N  +G  KL DFG A +L+ +       I + ++ APE+I     Y    D+
Sbjct: 157 IKPHNVLVNEADGTLKLCDFGSAKKLSPS-EPNVAYICSRYYRAPELIFGNQHYTTAVDI 215
Query: 165 WSLGITALEMAEGKPPY------GDIHPMRAIFMIPT-----KPPPSFREPDVWTPEFI- 212
           WS+G    EM  G+P +      G +H +  +   P+     K  PS  + D++  + I 
Sbjct: 216 WSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIP 275
Query: 213 -----------------DFVSRCLVKNPEERATASEMLNHE-FIQRHD 242
                            D +S  L   PEER    E L H  F + HD
Sbjct: 276 WSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHD 323

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 52/247 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT---------LSEDEIATILCDTLK 59
           +V   G+      + ++ EYC  G + + +R + +          L   ++        +
Sbjct: 104 IVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQ 163
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ +L  +  IHRD+ A                                  N+LL T GH
Sbjct: 164 GMAFLASKNCIHRDVAAR---------------------------------NVLL-TNGH 189
Query: 120 -AKLADFGVAGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM- 174
            AK+ DFG+A  +   ++ + K N  +    WMAPE I +  Y   +D+WS GI   E+ 
Sbjct: 190 VAKIGDFGLARDIMNDSNYIVKGNARLPVK-WMAPESIFDCVYTVQSDVWSYGILLWEIF 248
Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           + G  PY  I  + + F    K      +P          +  C    P  R T  ++ +
Sbjct: 249 SLGLNPYPGI-LVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICS 307
Query: 235 HEFIQRH 241
             F+Q  
Sbjct: 308 --FLQEQ 312

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ +S   +  +      
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 123 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 149
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 150 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 209
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 210 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 52/247 (21%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT---------LSEDEIATILCDTLK 59
           +V   G+      + ++ EYC  G + + +R + +          L   ++        +
Sbjct: 112 IVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELRDLLHFSSQVAQ 171
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ +L  +  IHRD+ A                                  N+LL T GH
Sbjct: 172 GMAFLASKNCIHRDVAAR---------------------------------NVLL-TNGH 197
Query: 120 -AKLADFGVAGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM- 174
            AK+ DFG+A  +   ++ + K N  +    WMAPE I +  Y   +D+WS GI   E+ 
Sbjct: 198 VAKIGDFGLARDIMNDSNYIVKGNARLPVK-WMAPESIFDCVYTVQSDVWSYGILLWEIF 256
Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           + G  PY  I  + + F    K      +P          +  C    P  R T  ++ +
Sbjct: 257 SLGLNPYPGI-LVNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICS 315
Query: 235 HEFIQRH 241
             F+Q  
Sbjct: 316 --FLQEQ 320

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ +S   +  +      
Sbjct: 68  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 127
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 128 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 154
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 155 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 214
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 215 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I++E+   G++ D +R   ++ ++   +  +      
Sbjct: 68  MKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 127
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 128 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 154
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 155 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 214
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 215 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 45/236 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDL-WIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           M+  + P V+   G       L  +++ Y   G +   +R  ++  +  ++ +      +
Sbjct: 76  MRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVAR 135
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+EYL  ++ +HRD                                 L A N +L+    
Sbjct: 136 GMEYLAEQKFVHRD---------------------------------LAARNCMLDESFT 162
Query: 120 AKLADFGVAGQLTD-----TMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALE- 173
            K+ADFG+A  + D         R+  +    W A E +Q   +   +D+WS G+   E 
Sbjct: 163 VKVADFGLARDILDREYYSVQQHRHARLPVK-WTALESLQTYRFTTKSDVWSFGVLLWEL 221
Query: 174 MAEGKPPYGDIHPMRAI-FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
           +  G PPY  I P     F+   +  P   +P+         + +C   +P  R T
Sbjct: 222 LTRGAPPYRHIDPFDLTHFLAQGRRLP---QPEYCPDSLYQVMQQCWEADPAVRPT 274

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 42/181 (23%)
Query: 9   VVKYYGSYFKNT----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           ++++ G+  + T    DLW++  +   GS+SD   L+   +S +E+  I     +GL YL
Sbjct: 80  ILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDF--LKANVVSWNELCHIAETMARGLAYL 137
Query: 65  HLRRKIHRDI---KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
           H       DI   K G    +  R                     +K+ N+LL     A 
Sbjct: 138 H------EDIPGLKDGHKPAISHR--------------------DIKSKNVLLKNNLTAC 171
Query: 122 LADFGVAGQLTDTMAKRNT--VIGTPFWMAPEVIQ-EIGYDCVA----DMWSLGITALEM 174
           +ADFG+A +     +  +T   +GT  +MAPEV++  I +   A    DM+++G+   E+
Sbjct: 172 IADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWEL 231
Query: 175 A 175
           A
Sbjct: 232 A 232

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 75/201 (37%), Gaps = 61/201 (30%)
Query: 1   MQQCDSPYVVKYYGSYF-KNTD-----------LWIVMEYCGAGSVSDIMRLRKKTLSED 48
           + + + P +V+Y+ ++  KNT            L+I M+ C   ++ D M  R  T+ E 
Sbjct: 57  LAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRC-TIEER 115
Query: 49  EIAT---ILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLF 105
           E +    I     + +E+LH +  +HRD                                
Sbjct: 116 ERSVCLHIFLQIAEAVEFLHSKGLMHRD-------------------------------- 143
Query: 106 RLKAGNILLNTEGHAKLADFGVAGQLTD------------TMAKRNTVIGTPFWMAPEVI 153
            LK  NI    +   K+ DFG+   +                A+    +GT  +M+PE I
Sbjct: 144 -LKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQI 202
Query: 154 QEIGYDCVADMWSLGITALEM 174
               Y    D++SLG+   E+
Sbjct: 203 HGNSYSHKVDIFSLGLILFEL 223

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/246 (20%), Positives = 93/246 (37%), Gaps = 38/246 (15%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G        +IV EY   G++ D +R   ++ ++   +  +      
Sbjct: 82  MKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMATQISS 141
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 142 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHV 168
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 169 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYG 228
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
             PY  I   +   ++  +      +P+   P+  + +  C   +P +R + +E      
Sbjct: 229 MSPYPGIDLSQVYDLL--EKGYRMEQPEGCPPKVYELMRACWKWSPADRPSFAETHQAFE 286
Query: 238 IQRHDT 243
              HD+
Sbjct: 287 TMFHDS 292

>pdb|4EUU|A Chain A, Structure Of Bx-795 Complexed With Human Tbk1 Kinase Domain Phosphorylated On Ser172 Length = 319

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 44/170 (25%)
Query: 24  IVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
           ++ME+C  GS+  ++        L E E   +L D + G+ +L     +HR+IK G    
Sbjct: 86  LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPG---- 141
Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA--KLADFGVAGQLTDTMAKRN 139
                       N++                ++  +G +  KL DFG A +L D   +  
Sbjct: 142 ------------NIMR---------------VIGEDGQSVYKLTDFGAARELEDD-EQFV 173
Query: 140 TVIGTPFWMAPEVIQ--------EIGYDCVADMWSLGITALEMAEGKPPY 181
            + GT  ++ P++ +        +  Y    D+WS+G+T    A G  P+
Sbjct: 174 XLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPF 223

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ ++   +  +      
Sbjct: 68  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 127
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 128 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 154
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 155 VKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 214
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 215 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 21/238 (8%)
Query: 9   VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR 68
           +V   G+      + ++ EYC  G + + +R + + +    +A       +GL+    R 
Sbjct: 97  IVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAMLGPSLAP--GQDPEGLDKEDGRP 154
Query: 69  KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH-AKLADFGV 127
              RD+   S  +        S  C      I++ +    A N+LL T GH AK+ DFG+
Sbjct: 155 LELRDLLHFSSQVAQGMAFLASKNC------IHRDV---AARNVLL-TNGHVAKIGDFGL 204
Query: 128 AGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AEGKPPYGD 183
           A  +   ++ + K N  +    WMAPE I +  Y   +D+WS GI   E+ + G  PY  
Sbjct: 205 ARDIMNDSNYIVKGNARLPVK-WMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPG 263
Query: 184 IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH 241
           I  + + F    K      +P          +  C    P  R T  ++ +  F+Q  
Sbjct: 264 IL-VNSKFYKLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICS--FLQEQ 318

>pdb|1M2P|A Chain A, Crystal Structure Of 1,8-Di-Hydroxy-4-Nitro- AnthraquinoneCK2 KINASE COMPLEX Length = 325

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 69/233 (29%)
Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
           TL++ +I   + + LK L+Y H +  +HRD+K                  NV+ +   + 
Sbjct: 121 TLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPH----------------NVMIDHELRK 164
Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVA 162
           L                +L D+G+A +      + N  + + ++  PE++ ++  YD   
Sbjct: 165 L----------------RLIDWGLA-EFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSL 207
Query: 163 DMWSLGITALEMAEGKPP--YG-DIHPMRA-------------------IFMIPT----- 195
           DMWSLG     M   K P  YG D H                       I + P      
Sbjct: 208 DMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALV 267
Query: 196 -----KPPPSFREPD---VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
                KP   F   D   + +PE IDF+ + L  + +ER TA E + H + Q+
Sbjct: 268 GRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 320

>pdb|4DGM|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The Inhibitor Apigenin Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 69/233 (29%)
Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
           TL++ +I   + + LK L+Y H +  +HRD+K                  NV+ +   + 
Sbjct: 121 TLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPH----------------NVMIDHELRK 164
Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVA 162
           L                +L D+G+A +      + N  + + ++  PE++ ++  YD   
Sbjct: 165 L----------------RLIDWGLA-EFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSL 207
Query: 163 DMWSLGITALEMAEGKPP--YG-DIHPMRA-------------------IFMIPT----- 195
           DMWSLG     M   K P  YG D H                       I + P      
Sbjct: 208 DMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALV 267
Query: 196 -----KPPPSFREPD---VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
                KP   F   D   + +PE IDF+ + L  + +ER TA E + H + Q+
Sbjct: 268 GRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 320

>pdb|1DAW|A Chain A, Crystal Structure Of A Binary Complex Of Protein Kinase Ck2 (Alpha-Subunit) And Mg-Amppnp Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 69/233 (29%)
Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
           TL++ +I   + + LK L+Y H +  +HRD+K                  NV+ +   + 
Sbjct: 121 TLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPH----------------NVMIDHELRK 164
Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVA 162
           L                +L D+G+A +      + N  + + ++  PE++ ++  YD   
Sbjct: 165 L----------------RLIDWGLA-EFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSL 207
Query: 163 DMWSLGITALEMAEGKPP--YG-DIHPMRA-------------------IFMIPT----- 195
           DMWSLG     M   K P  YG D H                       I + P      
Sbjct: 208 DMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALV 267
Query: 196 -----KPPPSFREPD---VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
                KP   F   D   + +PE IDF+ + L  + +ER TA E + H + Q+
Sbjct: 268 GRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 320

>pdb|3KXG|A Chain A, Crystal Structure Of Z. Mays Ck2 Kinase Alpha Subunit In Complex With The Inhibitor 3,4,5,6,7-Pentabromo-1h-Indazole (K64) Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 69/233 (29%)
Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
           TL++ +I   + + LK L+Y H +  +HRD+K                  NV+ +   + 
Sbjct: 121 TLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPH----------------NVMIDHELRK 164
Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVA 162
           L                +L D+G+A +      + N  + + ++  PE++ ++  YD   
Sbjct: 165 L----------------RLIDWGLA-EFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSL 207
Query: 163 DMWSLGITALEMAEGKPP--YG-DIHPMRA-------------------IFMIPT----- 195
           DMWSLG     M   K P  YG D H                       I + P      
Sbjct: 208 DMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALV 267
Query: 196 -----KPPPSFREPD---VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
                KP   F   D   + +PE IDF+ + L  + +ER TA E + H + Q+
Sbjct: 268 GRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 320

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ ++   +  +      
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 122
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 123 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 149
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 150 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 209
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 210 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|4DGN|A Chain A, Crystal Structure Of Maize Ck2 In Complex With The Inhibitor Luteolin Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 69/233 (29%)
Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
           TL++ +I   + + LK L+Y H +  +HRD+K                  NV+ +   + 
Sbjct: 121 TLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPH----------------NVMIDHELRK 164
Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVA 162
           L                +L D+G+A +      + N  + + ++  PE++ ++  YD   
Sbjct: 165 L----------------RLIDWGLA-EFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSL 207
Query: 163 DMWSLGITALEMAEGKPP--YG-DIHPMRA-------------------IFMIPT----- 195
           DMWSLG     M   K P  YG D H                       I + P      
Sbjct: 208 DMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALV 267
Query: 196 -----KPPPSFREPD---VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
                KP   F   D   + +PE IDF+ + L  + +ER TA E + H + Q+
Sbjct: 268 GRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 320

>pdb|1DS5|A Chain A, Dimeric Crystal Structure Of The Alpha Subunit In Complex With Two Beta Peptides Mimicking The Architecture Of The Tetrameric Protein Kinase Ck2 Holoenzyme. Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 69/233 (29%)
Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
           TL++ +I   + + LK L+Y H +  +HRD+K                  NV+ +   + 
Sbjct: 122 TLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPH----------------NVMIDHELRK 165
Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVA 162
           L                +L D+G+A +      + N  + + ++  PE++ ++  YD   
Sbjct: 166 L----------------RLIDWGLA-EFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSL 208
Query: 163 DMWSLGITALEMAEGKPP--YG-DIHPMRA-------------------IFMIPT----- 195
           DMWSLG     M   K P  YG D H                       I + P      
Sbjct: 209 DMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALV 268
Query: 196 -----KPPPSFREPD---VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
                KP   F   D   + +PE IDF+ + L  + +ER TA E + H + Q+
Sbjct: 269 GRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 321

>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide Length = 361

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 17/181 (9%)
Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D+   VKY   + KN  + I M Y    S  DI+     +LS  E+   + +  K L+ +
Sbjct: 80  DNVMGVKY--CFRKNDHVVIAMPYLEHESFLDIL----NSLSFQEVREYMLNLFKALKRI 133
Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H    +HRD+K  S  L   RL   ++    +    + T   L      + +E   +   
Sbjct: 134 HQFGIVHRDVKP-SNFLYNRRLKKYALVDFGLAQGTHDTKIELLK---FVQSEAQQERCS 189
Query: 125 FGVAGQLTDTMAKRNTV---IGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGKPP 180
                + +  +++R  V    GTP + APEV+ +      A DMWS G+  L +  G+ P
Sbjct: 190 ---QNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYP 246
Query: 181 Y 181
           +
Sbjct: 247 F 247

>pdb|4ANM|A Chain A, Complex Of Ck2 With A Cdc7 Inhibitor Length = 335

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 69/233 (29%)
Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
           TL++ +I   + + LK L+Y H +  +HRD+K                  NV+ +   + 
Sbjct: 123 TLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPH----------------NVMIDHELRK 166
Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVA 162
           L                +L D+G+A +      + N  + + ++  PE++ ++  YD   
Sbjct: 167 L----------------RLIDWGLA-EFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSL 209
Query: 163 DMWSLGITALEMAEGKPP--YG-DIHPMRA-------------------IFMIPT----- 195
           DMWSLG     M   K P  YG D H                       I + P      
Sbjct: 210 DMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALV 269
Query: 196 -----KPPPSFREPD---VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
                KP   F   D   + +PE IDF+ + L  + +ER TA E + H + Q+
Sbjct: 270 GRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 322

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ ++   +  +      
Sbjct: 76  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 135
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 136 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 162
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 163 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 222
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 223 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 275

>pdb|2QC6|A Chain A, Protein Kinase Ck2 In Complex With Dbc Length = 332

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 69/233 (29%)
Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
           TL++ +I   + + LK L+Y H +  +HRD+K                  NV+ +   + 
Sbjct: 122 TLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPH----------------NVMIDHELRK 165
Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVA 162
           L                +L D+G+A +      + N  + + ++  PE++ ++  YD   
Sbjct: 166 L----------------RLIDWGLA-EFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSL 208
Query: 163 DMWSLGITALEMAEGKPP--YG-DIHPMRA-------------------IFMIPT----- 195
           DMWSLG     M   K P  YG D H                       I + P      
Sbjct: 209 DMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALV 268
Query: 196 -----KPPPSFREPD---VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
                KP   F   D   + +PE IDF+ + L  + +ER TA E + H + Q+
Sbjct: 269 GRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 321

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ ++   +  +      
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 122
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 123 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 149
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 150 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 209
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 210 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 262

>pdb|2PVH|A Chain A, Structure-Based Design Of Pyrazolo[1,5-A][1,3,5]triazine Derivatives As Potent Inhibitors Of Protein Kinase Ck2 Length = 352

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 69/233 (29%)
Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
           TL++ +I   + + LK L+Y H +  +HRD+K                  NV+ +   + 
Sbjct: 142 TLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPH----------------NVMIDHELRK 185
Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVA 162
           L                +L D+G+A +      + N  + + ++  PE++ ++  YD   
Sbjct: 186 L----------------RLIDWGLA-EFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSL 228
Query: 163 DMWSLGITALEMAEGKPP--YG-DIHPMRA-------------------IFMIPT----- 195
           DMWSLG     M   K P  YG D H                       I + P      
Sbjct: 229 DMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDGLNAYLNKYRIELDPQLEALV 288
Query: 196 -----KPPPSFREPD---VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
                KP   F   D   + +PE IDF+ + L  + +ER TA E + H + Q+
Sbjct: 289 GRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 341

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ ++   +  +      
Sbjct: 68  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 127
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 128 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 154
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 155 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 214
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 215 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|3PVG|A Chain A, Crystal Structure Of Z. Mays Ck2 Alpha Subunit In Complex With The Inhibitor 4,5,6,7-Tetrabromo-1-Carboxymethylbenzimidazole (K68) Length = 331

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 69/233 (29%)
Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
           TL++ +I   + + LK L+Y H +  +HRD+K                  NV+ +   + 
Sbjct: 121 TLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPH----------------NVMIDHELRK 164
Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVA 162
           L                +L D+G+A +      + N  + + ++  PE++ ++  YD   
Sbjct: 165 L----------------RLIDWGLA-EFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSL 207
Query: 163 DMWSLGITALEMAEGKPP--YG-DIHPMRA-------------------IFMIPT----- 195
           DMWSLG     M   K P  YG D H                       I + P      
Sbjct: 208 DMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALV 267
Query: 196 -----KPPPSFREPD---VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
                KP   F   D   + +PE IDF+ + L  + +ER TA E + H + Q+
Sbjct: 268 GRHSRKPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQ 320

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ ++   +  +      
Sbjct: 67  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 126
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 127 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 153
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 154 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 213
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 214 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 266

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ ++   +  +      
Sbjct: 65  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 124
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 125 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 151
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 152 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 211
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 212 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 264

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ ++   +  +      
Sbjct: 65  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 124
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 125 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 151
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 152 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 211
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 212 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 264

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ ++   +  +      
Sbjct: 68  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 127
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 128 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 154
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 155 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 214
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 215 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 267

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ +S   +  +      
Sbjct: 270 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 329
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHR+                                 L A N L+     
Sbjct: 330 AMEYLEKKNFIHRN---------------------------------LAARNCLVGENHL 356
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 357 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 416
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 417 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 469

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ ++   +  +      
Sbjct: 65  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 124
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 125 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 151
Query: 120 AKLADFGVAGQLT-DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T DT            W APE +    +   +D+W+ G+   E+A  G
Sbjct: 152 VKVADFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 211
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 212 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 264

>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/242 (20%), Positives = 98/242 (40%), Gaps = 39/242 (16%)
Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           +Q     VV + G+      L I+   C   ++  ++R  K  L  ++   I  + +KG+
Sbjct: 84  RQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGM 143
Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            YLH +  +H+D+K  S  + YD                         G +++   G   
Sbjct: 144 GYLHAKGILHKDLK--SKNVFYDN------------------------GKVVITDFGLFS 177
Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV---------ADMWSLGITAL 172
           ++    AG+  D +  +N   G    +APE+I+++  D           +D+++LG    
Sbjct: 178 ISGVLQAGRREDKLRIQN---GWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWY 234
Query: 173 EMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
           E+   + P+        I+ + T   P+  +  +   E  D +  C     EER T +++
Sbjct: 235 ELHAREWPFKTQPAEAIIWQMGTGMKPNLSQIGM-GKEISDILLFCWAFEQEERPTFTKL 293
Query: 233 LN 234
           ++
Sbjct: 294 MD 295

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 92/235 (39%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ ++   +  +      
Sbjct: 64  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 123
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 124 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 150
Query: 120 AKLADFGVAGQLT-DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T DT            W APE +    +   +D+W+ G+   E+A  G
Sbjct: 151 VKVADFGLSRLMTGDTYTAPAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 210
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K     R P+    +  + +  C   NP +R + +E+
Sbjct: 211 MSPYPGID-LSQVYELLEKDYRMER-PEGCPEKVYELMRACWQWNPSDRPSFAEI 263

>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A Ruthenium Organometallic Ligand Ru1 Length = 312

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 19/150 (12%)
Query: 107 LKAGNILLNTE-GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV-ADM 164
           +K  NIL++   G AKL DFG    L D         GT  +  PE I    Y  + A +
Sbjct: 165 IKDENILIDLRRGCAKLIDFGSGALLHDE--PYTDFDGTRVYSPPEWISRHQYHALPATV 222
Query: 165 WSLGITALEMAEGKPPYG-DIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   + A    P             +P+    + RCL   P
Sbjct: 223 WSLGILLYDMVCGDIPFERDQEILEAELHFPAH----------VSPDCCALIRRCLAPKP 272
Query: 224 EERATASEMLNHEFIQRHDTD----PSQNG 249
             R +  E+L   ++Q    D    PS+ G
Sbjct: 273 SSRPSLEEILLDPWMQTPAEDVPLNPSKGG 302

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/235 (19%), Positives = 91/235 (38%), Gaps = 38/235 (16%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ ++   +  +      
Sbjct: 309 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISS 368
Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHR+                                 L A N L+     
Sbjct: 369 AMEYLEKKNFIHRN---------------------------------LAARNCLVGENHL 395
Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 396 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 455
Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             PY  I  +  ++ +  K       P+    +  + +  C   NP +R + +E+
Sbjct: 456 MSPYPGID-LSQVYELLEK-DYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI 508

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 87/244 (35%), Gaps = 55/244 (22%)
Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---------------KKTLSEDEIAT 52
           ++VK+YG       L +V EY   G ++  +R                 K  L   ++  
Sbjct: 78  HIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLH 137
Query: 53  ILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
           I      G+ YL  +  +HRD+   +          C +  N++                
Sbjct: 138 IASQIASGMVYLASQHFVHRDLATRN----------CLVGANLLV--------------- 172
Query: 113 LLNTEGHAKLADFGVAGQLTDTMAKR---NTVIGTPFWMAPEVIQEIGYDCVADMWSLGI 169
                   K+ DFG++  +  T   R   +T++    WM PE I    +   +D+WS G+
Sbjct: 173 --------KIGDFGMSRDVYSTDYYRVGGHTMLPIR-WMPPESIMYRKFTTESDVWSFGV 223
Query: 170 TALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              E+   GK P+  +     I  I          P V   E  D +  C  + P++R  
Sbjct: 224 ILWEIFTYGKQPWFQLSNTEVIECITQG--RVLERPRVCPKEVYDVMLGCWQREPQQRLN 281
Query: 229 ASEM 232
             E+
Sbjct: 282 IKEI 285

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 107 LKAGNILLNTEGHA--KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM 164
           LK  NILL  +G +  K+ DFG +        +  T I + F+ APEVI    Y    DM
Sbjct: 226 LKPENILLKQQGRSGIKVIDFGSS---CYEHQRVYTXIQSRFYRAPEVILGARYGMPIDM 282
Query: 165 WSLGITALEMAEGKP 179
           WSLG    E+  G P
Sbjct: 283 WSLGCILAELLTGYP 297

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 107 LKAGNILLNTEGHA--KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM 164
           LK  NILL  +G +  K+ DFG +        +  T I + F+ APEVI    Y    DM
Sbjct: 226 LKPENILLKQQGRSGIKVIDFGSS---CYEHQRVYTXIQSRFYRAPEVILGARYGMPIDM 282
Query: 165 WSLGITALEMAEGKP 179
           WSLG    E+  G P
Sbjct: 283 WSLGCILAELLTGYP 297

>pdb|4DGL|C Chain C, Crystal Structure Of The Ck2 Tetrameric Holoenzyme Length = 335

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 93/240 (38%), Gaps = 70/240 (29%)
Query: 35  SDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCN 94
           +D  +LR+ TL++ +I   + + LK L+Y H    +HRD+K                  N
Sbjct: 119 TDFKQLRQ-TLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------N 161
Query: 95  VITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ 154
           V+ +  ++ L  +  G           LA+F   GQ      + N  + + ++  PE++ 
Sbjct: 162 VMIDHEHRKLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLV 204
Query: 155 EIG-YDCVADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP----------- 197
           +   YD   DMWSLG     M   K P+   H      +R   ++ T+            
Sbjct: 205 DYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIE 264
Query: 198 -PPSFRE------------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
             P F +                    + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 265 LDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor Length = 276

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 139 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 196
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 197 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SSECQHLIRWCLALRP 246
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 247 SDRPTFEEIQNHPWMQ 262

>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7- Azaindole Length = 273

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 136 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 193
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 194 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SSECQHLIRWCLALRP 243
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 244 SDRPTFEEIQNHPWMQ 259

>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation Length = 293

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 140 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 197
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 198 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SSECQHLIRWCLALRP 247
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 248 SDRPTFEEIQNHPWMQ 263

>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target Of Aberrant Somatic Hypermutations In Diffuse Large Cell Lymphoma Length = 293

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 140 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 197
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 198 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SSECQHLIRWCLALRP 247
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 248 SDRPTFEEIQNHPWMQ 263

>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As Potent, Highly Selective And Orally Bioavailable Pim Kinases Inhibitors Length = 294

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 141 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 198
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 199 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SSECQHLIRWCLALRP 248
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 249 SDRPTFEEIQNHPWMQ 264

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 97/273 (35%), Gaps = 70/273 (25%)
Query: 1   MQQCDSPYVVKYYGSYFKNTD------LWIVMEYCGAG--SVSDIMRLRKKTLSEDEIAT 52
           M+    P VV     ++ N D      L +V+EY        S      K+T+    I  
Sbjct: 86  MRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKL 145
Query: 53  ILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
            +   L+ L Y+H     HRDIK                                   N+
Sbjct: 146 YMYQLLRSLAYIHSIGICHRDIKPQ---------------------------------NL 172
Query: 113 LLNT-EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGIT 170
           LL+   G  KL DFG A  L        + I + ++ APE+I     Y    D+WS G  
Sbjct: 173 LLDPPSGVLKLIDFGSAKILI-AGEPNVSXICSRYYRAPELIFGATNYTTNIDIWSTGCV 231
Query: 171 ALEMAEGKPPY---GDIHPMRAIFMIPTKPP--------PSFRE-------PDVWT---- 208
             E+ +G+P +     I  +  I  +   P         P++ E       P  ++    
Sbjct: 232 MAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFR 291
Query: 209 ----PEFIDFVSRCLVKNPEERATASEMLNHEF 237
               P+ ID +SR L   P  R TA E L H F
Sbjct: 292 PRTPPDAIDLISRLLEYTPSARLTAIEALCHPF 324

>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small Molecule Inhibitor Length = 298

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 141 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 198
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 199 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SSECQHLIRWCLALRP 248
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 249 SDRPTFEEIQNHPWMQ 264

>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution Length = 300

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 155 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 212
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 213 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SSECQHLIRWCLALRP 262
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 263 SDRPTFEEIQNHPWMQ 278

>pdb|4ALU|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 183 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 240
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 241 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SSECQHLIRWCLALRP 290
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 291 SDRPTFEEIQNHPWMQ 306

>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine Length = 273

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 136 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 193
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 194 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SXECQHLIRWCLALRP 243
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 244 SDRPTFEEIQNHPWMQ 259

>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As Potent Pim-1 Inhibitors Length = 299

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 141 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 198
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 199 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SSECQHLIRWCLALRP 248
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 249 SDRPTFEEIQNHPWMQ 264

>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain Length = 313

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 168 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 225
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 226 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SSECQHLIRWCLALRP 275
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 276 SDRPTFEEIQNHPWMQ 291

>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 156 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 213
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 214 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SSECQHLIRWCLALRP 263
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 264 SDRPTFEEIQNHPWMQ 279

>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1 Length = 328

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 183 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 240
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 241 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SSECQHLIRWCLALRP 290
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 291 SDRPTFEEIQNHPWMQ 306

>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs Resolution) Length = 362

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 88/248 (35%), Gaps = 65/248 (26%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
           L++V E      ++ ++  ++  +S   I   +   L GL  LH    +HRD        
Sbjct: 109 LYLVTELMRT-DLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRD-------- 159
Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTV 141
                                    L  GNILL       + DF +A + T   A +   
Sbjct: 160 -------------------------LHPGNILLADNNDITICDFNLAREDTAD-ANKTHY 193
Query: 142 IGTPFWMAPEVIQEI-GYDCVADMWSLGITALEMA------EGKPPYGDIHPMRAIFMIP 194
           +   ++ APE++ +  G+  + DMWS G    EM        G   Y  ++ +  +   P
Sbjct: 194 VTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTP 253
Query: 195 TK------PPPSFRE----------PDVWT-------PEFIDFVSRCLVKNPEERATASE 231
                     PS R+             WT       P  +D +++ L  NP+ R +  +
Sbjct: 254 KIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQ 313
Query: 232 MLNHEFIQ 239
            L H + +
Sbjct: 314 ALRHPYFE 321

>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of P27kip1 Carboxy-Terminal Peptide Length = 320

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 175 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 232
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 233 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SSECQHLIRWCLALRP 282
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 283 SDRPTFEEIQNHPWMQ 298

>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 38/176 (21%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           T LW+V +Y   GS+ D   L + T++ + +  +   T  GL +LH+      +I    G
Sbjct: 74  TQLWLVSDYHEHGSLFDY--LNRYTVTVEGMIKLALSTASGLAHLHM------EIVGTQG 125
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA---GQLTDTM- 135
                  D                   LK+ NIL+   G   +AD G+A      TDT+ 
Sbjct: 126 KPAIAHRD-------------------LKSKNILVKKNGTCCIADLGLAVRHDSATDTID 166
Query: 136 AKRNTVIGTPFWMAPEVIQEI----GYDCV--ADMWSLGITALEMAEGKPPYGDIH 185
              N  +GT  +MAPEV+ +      ++    AD++++G+   E+A  +   G IH
Sbjct: 167 IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR-RCSIGGIH 221

>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 156 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 213
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 214 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SXECQHLIRWCLALRP 263
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 264 SDRPTFEEIQNHPWMQ 279

>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa Length = 300

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 155 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 212
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 213 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SXECQHLIRWCLALRP 262
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 263 SDRPTFEEIQNHPWMQ 278

>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 38/176 (21%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           T LW+V +Y   GS+ D   L + T++ + +  +   T  GL +LH+      +I    G
Sbjct: 75  TQLWLVSDYHEHGSLFDY--LNRYTVTVEGMIKLALSTASGLAHLHM------EIVGTQG 126
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA---GQLTDTM- 135
                  D                   LK+ NIL+   G   +AD G+A      TDT+ 
Sbjct: 127 KPAIAHRD-------------------LKSKNILVKKNGTCCIADLGLAVRHDSATDTID 167
Query: 136 AKRNTVIGTPFWMAPEVIQEI----GYDCV--ADMWSLGITALEMAEGKPPYGDIH 185
              N  +GT  +MAPEV+ +      ++    AD++++G+   E+A  +   G IH
Sbjct: 168 IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR-RCSIGGIH 222

>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With Sb203580 Length = 362

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 31/163 (19%)
Query: 107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVADMW 165
           L  GNILL       + DF +A + T   A +   +   ++ APE++ +  G+  + DMW
Sbjct: 160 LHPGNILLADNNDITICDFNLAREDTAD-ANKTHYVTHRWYRAPELVMQFKGFTKLVDMW 218
Query: 166 SLGITALEMA------EGKPPYGDIHPMRAIFMIPTK------PPPSFRE---------- 203
           S G    EM        G   Y  ++ +  +   P          PS R+          
Sbjct: 219 SAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVP 278
Query: 204 PDVWT-------PEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
              WT       P  +D +++ L  NP+ R +  + L H + +
Sbjct: 279 ARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFE 321

>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546 Length = 308

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 163 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 220
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 221 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SXECQHLIRWCLALRP 270
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 271 SDRPTFEEIQNHPWMQ 286

>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 38/176 (21%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           T LW+V +Y   GS+ D   L + T++ + +  +   T  GL +LH+      +I    G
Sbjct: 80  TQLWLVSDYHEHGSLFDY--LNRYTVTVEGMIKLALSTASGLAHLHM------EIVGTQG 131
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA---GQLTDTM- 135
                  D                   LK+ NIL+   G   +AD G+A      TDT+ 
Sbjct: 132 KPAIAHRD-------------------LKSKNILVKKNGTCCIADLGLAVRHDSATDTID 172
Query: 136 AKRNTVIGTPFWMAPEVIQEI----GYDCV--ADMWSLGITALEMAEGKPPYGDIH 185
              N  +GT  +MAPEV+ +      ++    AD++++G+   E+A  +   G IH
Sbjct: 173 IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR-RCSIGGIH 227

>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 38/176 (21%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           T LW+V +Y   GS+ D   L + T++ + +  +   T  GL +LH+      +I    G
Sbjct: 77  TQLWLVSDYHEHGSLFDY--LNRYTVTVEGMIKLALSTASGLAHLHM------EIVGTQG 128
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA---GQLTDTM- 135
                  D                   LK+ NIL+   G   +AD G+A      TDT+ 
Sbjct: 129 KPAIAHRD-------------------LKSKNILVKKNGTCCIADLGLAVRHDSATDTID 169
Query: 136 AKRNTVIGTPFWMAPEVIQEI----GYDCV--ADMWSLGITALEMAEGKPPYGDIH 185
              N  +GT  +MAPEV+ +      ++    AD++++G+   E+A  +   G IH
Sbjct: 170 IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR-RCSIGGIH 224

>pdb|3JUH|A Chain A, Crystal Structure Of A Mutant Of Human Protein Kinase Ck2alpha With Altered Cosubstrate Specificity Length = 335

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 126 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------NVLIDHEHR 169
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 170 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 212
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 272
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 273 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 38/176 (21%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           T LW+V +Y   GS+ D   L + T++ + +  +   T  GL +LH+      +I    G
Sbjct: 113 TQLWLVSDYHEHGSLFDY--LNRYTVTVEGMIKLALSTASGLAHLHM------EIVGTQG 164
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA---GQLTDTM- 135
                  D                   LK+ NIL+   G   +AD G+A      TDT+ 
Sbjct: 165 KPAIAHRD-------------------LKSKNILVKKNGTCCIADLGLAVRHDSATDTID 205
Query: 136 AKRNTVIGTPFWMAPEVIQEI----GYDCV--ADMWSLGITALEMAEGKPPYGDIH 185
              N  +GT  +MAPEV+ +      ++    AD++++G+   E+A  +   G IH
Sbjct: 206 IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR-RCSIGGIH 260

>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With Inhibitor Length = 333

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 188 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 245
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R            FR+    + E    +  CL   P
Sbjct: 246 WSLGILLYDMVCGDIPFEHDEEIIRGQVF--------FRQRV--SXECQHLIRWCLALRP 295
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 296 SDRPTFEEIQNHPWMQ 311

>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With 4-(4- Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One Length = 328

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 183 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 240
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R            FR+    + E    +  CL   P
Sbjct: 241 WSLGILLYDMVCGDIPFEHDEEIIRGQVF--------FRQRV--SXECQHLIRWCLALRP 290
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 291 SDRPTFEEIQNHPWMQ 306

>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From Crystallographic Fragment Screen Length = 301

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 107 LKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC-VADM 164
           +K  NIL++   G  KL DFG    L DT+       GT  +  PE I+   Y    A +
Sbjct: 156 IKDENILIDLNRGELKLIDFGSGALLKDTVY--TDFDGTRVYSPPEWIRYHRYHGRSAAV 213
Query: 165 WSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           WSLGI   +M  G  P+  D   +R       +           + E    +  CL   P
Sbjct: 214 WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRV----------SXECQHLIRWCLALRP 263
Query: 224 EERATASEMLNHEFIQ 239
            +R T  E+ NH ++Q
Sbjct: 264 XDRPTFEEIQNHPWMQ 279

>pdb|3MB6|A Chain A, Human Ck2 Catalytic Domain In Complex With A Difurane Derivative Inhibitor (Cpa) Length = 331

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 126 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------NVMIDHEHR 169
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 170 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 212
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 272
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 273 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|3NSZ|A Chain A, Human Ck2 Catalytic Domain In Complex With Amppn Length = 330

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 125 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------NVMIDHEHR 168
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 169 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 211
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 212 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 271
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 272 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 323

>pdb|3NGA|A Chain A, Human Ck2 Catalytic Domain In Complex With Cx-4945 Length = 333

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 126 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------NVMIDHEHR 169
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 170 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 212
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 272
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 273 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 107 LKAGNILLNTEGHA--KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM 164
           LK  NILL  +G +  K+ DFG +        +    I + F+ APEVI    Y    DM
Sbjct: 226 LKPENILLKQQGRSGIKVIDFGSS---CYEHQRVYXXIQSRFYRAPEVILGARYGMPIDM 282
Query: 165 WSLGITALEMAEGKP 179
           WSLG    E+  G P
Sbjct: 283 WSLGCILAELLTGYP 297

>pdb|3H30|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 With 5,6-Dichloro-1-Beta-D- Ribofuranosylbenzimidazole Length = 334

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 126 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------NVMIDHEHR 169
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 170 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 212
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 272
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 273 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|3BQC|A Chain A, High Ph-Value Crystal Structure Of Emodin In Complex With The Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 126 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------NVMIDHEHR 169
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 170 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 212
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 272
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 273 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 38/176 (21%)
Query: 20  TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           T LW+V +Y   GS+ D   L + T++ + +  +   T  GL +LH+      +I    G
Sbjct: 100 TQLWLVSDYHEHGSLFDY--LNRYTVTVEGMIKLALSTASGLAHLHM------EIVGTQG 151
Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA---GQLTDTM- 135
                  D                   LK+ NIL+   G   +AD G+A      TDT+ 
Sbjct: 152 KPAIAHRD-------------------LKSKNILVKKNGTCCIADLGLAVRHDSATDTID 192
Query: 136 AKRNTVIGTPFWMAPEVIQEI----GYDCV--ADMWSLGITALEMAEGKPPYGDIH 185
              N  +GT  +MAPEV+ +      ++    AD++++G+   E+A  +   G IH
Sbjct: 193 IAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIAR-RCSIGGIH 247

>pdb|3Q9W|A Chain A, Crystal Structure Of Human Ck2 Alpha In Complex With Emodin At Ph 8.5 Length = 336

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 126 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------NVMIDHEHR 169
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 170 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 212
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 272
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 273 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|1PJK|A Chain A, Crystal Structure Of A C-terminal Deletion Mutant Of Human Protein Kinase Ck2 Catalytic Subunit Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 125 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------NVMIDHEHR 168
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 169 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 211
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 212 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 271
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 272 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 323

>pdb|1JWH|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 337

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 126 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------NVMIDHEHR 169
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 170 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 212
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 272
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 273 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|3Q04|A Chain A, Crystal Structure Of The Apo-Form Of Human Ck2 Alpha At Ph 8.5 Length = 328

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 124 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------NVMIDHEHR 167
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 168 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 210
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 211 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 270
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 271 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 322

>pdb|2ZJW|A Chain A, Crystal Structure Of Human Ck2 Alpha Complexed With Ellagic Acid Length = 340

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 131 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKP----------------HNVMIDHEHR 174
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 175 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 217
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 218 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 277
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 278 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 329

>pdb|2R7I|A Chain A, Crystal Structure Of Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 126 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------NVMIDHEHR 169
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 170 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 212
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 272
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 273 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|3U87|A Chain A, Structure Of A Chimeric Construct Of Human Ck2alpha And Human Ck2alpha' In Complex With A Non-hydrolysable Atp-analogue Length = 349

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 126 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------NVMIDHEHR 169
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 170 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 212
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 272
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 273 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 51/169 (30%)
Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSEDEIAT---ILCDTLKGLEYLHLRRKIHRDIKAGS 78
           L+I M+ C   ++ D M  R+ +L + E      I     + +E+LH +  +HRD     
Sbjct: 136 LYIQMQLCRKENLKDWMN-RRCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRD----- 189
Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKR 138
                                       LK  NI    +   K+ DFG+   + D   + 
Sbjct: 190 ----------------------------LKPSNIFFTMDDVVKVGDFGLVTAM-DQDEEE 220
Query: 139 NTV-------------IGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
            TV             +GT  +M+PE I    Y    D++SLG+   E+
Sbjct: 221 QTVLTPMPAYATHXGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFEL 269

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/246 (17%), Positives = 95/246 (38%), Gaps = 47/246 (19%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSED---------EIA 51
           M++ +  +VV+  G   +     ++ME    G +   +R  +  +  +         ++ 
Sbjct: 67  MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMI 126
Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
            +  +   G+ YL+  + +HRD                                 L A N
Sbjct: 127 QMAGEIADGMAYLNANKFVHRD---------------------------------LAARN 153
Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGI 169
            ++  +   K+ DFG+   + +T   R    G  P  WM+PE +++  +   +D+WS G+
Sbjct: 154 CMVAEDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGV 213
Query: 170 TALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              E+A   + PY  +   + +  +         +PD      ++ +  C   NP+ R +
Sbjct: 214 VLWEIATLAEQPYQGLSNEQVLRFV--MEGGLLDKPDNCPDMLLELMRMCWQYNPKMRPS 271
Query: 229 ASEMLN 234
             E+++
Sbjct: 272 FLEIIS 277

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/243 (19%), Positives = 91/243 (37%), Gaps = 51/243 (20%)
Query: 1   MQQCDSPYVVKYYGSYFKNTDL------WIVMEYCGAGSVSDIMRLRKK-----TLSEDE 49
           M++ D P+V K  G   ++          +++ +   G +   +   +       L    
Sbjct: 79  MKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQT 138
Query: 50  IATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKA 109
           +   + D   G+EYL  R  IHRD                                 L A
Sbjct: 139 LVRFMVDIACGMEYLSSRNFIHRD---------------------------------LAA 165
Query: 110 GNILLNTEGHAKLADFGVAGQL-TDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSL 167
            N +L  +    +ADFG++ ++ +    ++      P  W+A E + +  Y   +D+W+ 
Sbjct: 166 RNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAF 225
Query: 168 GITALE-MAEGKPPYGDIHPMRAI-FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEE 225
           G+T  E M  G+ PY  I       ++I        ++P     E  D + +C   +P++
Sbjct: 226 GVTMWEIMTRGQTPYAGIENAEIYNYLIGGN---RLKQPPECMEEVYDLMYQCWSADPKQ 282
Query: 226 RAT 228
           R +
Sbjct: 283 RPS 285

>pdb|1NA7|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 Length = 329

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 69/232 (29%)
Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD+K                  NV+ +  ++
Sbjct: 126 QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPH----------------NVMIDHEHR 169
Query: 103 TLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCV 161
            L  +  G           LA+F   GQ      + N  + + ++  PE++ +   YD  
Sbjct: 170 KLRLIDWG-----------LAEFYHPGQ------EYNVRVASRYFKGPELLVDYQMYDYS 212
Query: 162 ADMWSLGITALEMAEGKPPYGDIHP-----MRAIFMIPTKP------------PPSFRE- 203
            DMWSLG     M   K P+   H      +R   ++ T+              P F + 
Sbjct: 213 LDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDI 272
Query: 204 -----------------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
                              + +PE +DF+ + L  + + R TA E + H + 
Sbjct: 273 LGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	1e-139
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-136
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-133
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-132
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-132
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	1e-127
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-127
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	1e-124
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-114
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	1e-113
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-111
3fme_A	290	Dual specificity mitogen-activated protein kinase;	1e-110
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	1e-109
3an0_A	340	Dual specificity mitogen-activated protein kinase;	1e-108
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-100
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	3e-97
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-87
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	7e-84
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-82
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-75
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	3e-74
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	9e-70
2a19_B	284	Interferon-induced, double-stranded RNA-activated	8e-68
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	5e-64
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	6e-64
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	3e-62
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	6e-62
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-61
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	8e-54
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	2e-47
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-46
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-45
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-44
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	6e-44
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-43
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-43
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-42
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-42
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	3e-40
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	4e-40
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-38
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-38
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-38
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-38
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	3e-38
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-38
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-37
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-37
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-37
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	5e-37
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	7e-37
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-36
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-36
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-36
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	2e-36
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	2e-36
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	5e-36
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	6e-36
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	7e-36
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	7e-36
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-35
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	1e-35
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	2e-35
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	2e-35
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-35
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	3e-35
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	4e-35
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	4e-35
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	4e-35
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	5e-35
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	5e-35
3bhy_A	283	Death-associated protein kinase 3; death associate	5e-35
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	5e-35
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	6e-35
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	6e-35
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	1e-34
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-34
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-34
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-34
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	2e-34
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	3e-34
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	4e-34
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	8e-34
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	1e-33
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	1e-33
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	2e-33
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-33
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-33
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	2e-33
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	2e-33
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-33
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	5e-33
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	6e-33
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	7e-33
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	9e-33
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-32
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-32
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	8e-32
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	1e-31
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	1e-31
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	2e-31
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	3e-31
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	4e-31
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	7e-31
3ork_A	311	Serine/threonine protein kinase; structural genomi	1e-30
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-30
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	3e-30
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	7e-30
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	8e-30
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	1e-29
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	1e-29
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	2e-29
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	4e-29
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	6e-29
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	7e-29
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	7e-29
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	8e-29
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	9e-29
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	9e-29
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	2e-28
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	2e-28
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	3e-28
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-28
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	5e-28
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	2e-27
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	2e-27
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-27
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	3e-27
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	3e-27
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	1e-26
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	1e-26
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	2e-26
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	1e-25
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-25
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-25
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	2e-25
3niz_A	311	Rhodanese family protein; structural genomics, str	3e-25
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	3e-25
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	4e-25
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	5e-25
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	5e-25
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	8e-25
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	9e-25
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-24
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	1e-24
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-24
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-24
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	2e-24
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	2e-24
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	2e-24
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	4e-24
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	4e-24
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	8e-24
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	9e-24
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	1e-23
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	2e-23
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	2e-23
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	4e-23
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	5e-23
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	6e-23
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	1e-22
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-22
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	3e-22
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	4e-22
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	2e-21
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	2e-21
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-21
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	3e-21
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	3e-21
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-20
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	1e-20
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	2e-20
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-20
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	4e-20
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	4e-20
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	7e-20
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	9e-20
3uqc_A	286	Probable conserved transmembrane protein; structur	1e-19
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	2e-19
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	3e-19
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	3e-19
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	3e-19
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	9e-19
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	1e-18
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-18
3rp9_A	458	Mitogen-activated protein kinase; structural genom	1e-18
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	2e-18
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-18
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	2e-18
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	3e-18
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	3e-18
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-17
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	1e-17
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-17
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	3e-17
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	5e-17
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	5e-17
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	5e-17
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	6e-17
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	6e-17
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	7e-17
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	1e-16
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	3e-16
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	4e-16
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	5e-16
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-15
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	5e-14
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	8e-14
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	1e-13
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-13
4aoj_A	329	High affinity nerve growth factor receptor; transf	1e-12
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-12
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	6e-12
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	9e-12
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-11
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	3e-11
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	6e-11
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	8e-11
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	8e-11
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	2e-10
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-10
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	4e-10
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	5e-10
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-09
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-09
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	2e-09
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	2e-09
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	2e-09
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	2e-07
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	7e-06
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	1e-05
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	1e-05
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	1e-05
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	2e-05
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	1e-04

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score =  391 bits (1006), Expect = e-139
 Identities = 174/240 (72%), Positives = 193/240 (80%), Gaps = 33/240 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQCDSP+VVKYYGSYFKNTDLWIVMEYCGAGSVSDI+RLR KTL+EDEIATIL  TLKG
Sbjct: 78  MQQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKG 137

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH  RKIHRDIKAG                                 NILLNTEGHA
Sbjct: 138 LEYLHFMRKIHRDIKAG---------------------------------NILLNTEGHA 164

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY+CVAD+WSLGITA+EMAEGKPP
Sbjct: 165 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPP 224

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           Y DIHPMRAIFMIPT PPP+FR+P++W+  F DFV +CLVK+PE+RATA+++L H F++ 
Sbjct: 225 YADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVRS 284

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score =  385 bits (990), Expect = e-136
 Identities = 92/245 (37%), Positives = 138/245 (56%), Gaps = 38/245 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +  CD PY+VK  G+Y+ +  LWI++E+C  G+V  IM    + L+E +I  +    L+ 
Sbjct: 70  LATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEA 129

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L +LH +R IHRD+KAG                                 N+L+  EG  
Sbjct: 130 LNFLHSKRIIHRDLKAG---------------------------------NVLMTLEGDI 156

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-----QEIGYDCVADMWSLGITALEMA 175
           +LADFGV+ +   T+ KR++ IGTP+WMAPEV+     ++  YD  AD+WSLGIT +EMA
Sbjct: 157 RLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMA 216

Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           + +PP+ +++PMR +  I    PP+   P  W+ EF DF+   L KNPE R +A+++L H
Sbjct: 217 QIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEH 276

Query: 236 EFIQR 240
            F+  
Sbjct: 277 PFVSS 281

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score =  377 bits (971), Expect = e-133
 Identities = 120/246 (48%), Positives = 151/246 (61%), Gaps = 37/246 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + QCDSPYV KYYGSY K+T LWI+MEY G GS  D++      L E +IATIL + LKG
Sbjct: 74  LSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE--PGPLDETQIATILREILKG 131

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+YLH  +KIHRDIKA                                  N+LL+  G  
Sbjct: 132 LDYLHSEKKIHRDIKAA---------------------------------NVLLSEHGEV 158

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KLADFGVAGQLTDT  KRNT +GTPFWMAPEVI++  YD  AD+WSLGITA+E+A G+PP
Sbjct: 159 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 218

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           + ++HPM+ +F+IP   PP+      ++    +FV  CL K P  R TA E+L H+FI R
Sbjct: 219 HSELHPMKVLFLIPKNNPPTLEGN--YSKPLKEFVEACLNKEPSFRPTAKELLKHKFILR 276

Query: 241 HDTDPS 246
           +    S
Sbjct: 277 NAKKTS 282

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score =  374 bits (962), Expect = e-132
 Identities = 88/240 (36%), Positives = 136/240 (56%), Gaps = 35/240 (14%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M++  +P +V Y  SY    +LW+VMEY   GS++D++   +  + E +IA +  + L+ 
Sbjct: 71  MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQA 128

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LE+LH  + IHRDIK+                                  NILL  +G  
Sbjct: 129 LEFLHSNQVIHRDIKSD---------------------------------NILLGMDGSV 155

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG   Q+T   +KR+T++GTP+WMAPEV+    Y    D+WSLGI A+EM EG+PP
Sbjct: 156 KLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           Y + +P+RA+++I T   P  + P+  +  F DF++RCL  + E+R +A E+L H+F++ 
Sbjct: 216 YLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKI 275

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score =  374 bits (961), Expect = e-132
 Identities = 85/240 (35%), Positives = 131/240 (54%), Gaps = 35/240 (14%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+      VV+ Y SY    +LW++ME+   G+++DI+   +  L+E++IAT+    L+ 
Sbjct: 96  MRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVS--QVRLNEEQIATVCEAVLQA 153

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH +  IHRDIK+                                  +ILL  +G  
Sbjct: 154 LAYLHAQGVIHRDIKSD---------------------------------SILLTLDGRV 180

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL+DFG   Q++  + KR +++GTP+WMAPEVI    Y    D+WSLGI  +EM +G+PP
Sbjct: 181 KLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPP 240

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           Y    P++A+  +   PPP  +     +P   DF+ R LV++P+ERATA E+L+H F+ +
Sbjct: 241 YFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQ 300

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score =  364 bits (936), Expect = e-127
 Identities = 91/243 (37%), Positives = 125/243 (51%), Gaps = 42/243 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q+   P  ++Y G Y +    W+VMEYC  GS SD++ + KK L E EIA +    L+G
Sbjct: 108 LQKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQG 166

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH    IHRD+KAG                                 NILL+  G  
Sbjct: 167 LAYLHSHNMIHRDVKAG---------------------------------NILLSEPGLV 193

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI---QEIGYDCVADMWSLGITALEMAEG 177
           KL DFG A  +       N+ +GTP+WMAPEVI    E  YD   D+WSLGIT +E+AE 
Sbjct: 194 KLGDFGSASIMA----PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 249

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           KPP  +++ M A++ I     P+ +    W+  F +FV  CL K P++R T+  +L H F
Sbjct: 250 KPPLFNMNAMSALYHIAQNESPALQSGH-WSEYFRNFVDSCLQKIPQDRPTSEVLLKHRF 308

Query: 238 IQR 240
           + R
Sbjct: 309 VLR 311

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score =  363 bits (933), Expect = e-127
 Identities = 99/252 (39%), Positives = 137/252 (54%), Gaps = 46/252 (18%)

Query: 1   MQQCDSPYVVKYYGSYFK------NTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATI 53
            +      +  YYG++ K      +  LW+VME+CGAGSV+D+++  +  TL E+ IA I
Sbjct: 75  KKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYI 134

Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
             + L+GL +LH  + IHRDIK                                   N+L
Sbjct: 135 CREILRGLSHLHQHKVIHRDIKGQ---------------------------------NVL 161

Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----EIGYDCVADMWSLG 168
           L      KL DFGV+ QL  T+ +RNT IGTP+WMAPEVI      +  YD  +D+WSLG
Sbjct: 162 LTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLG 221

Query: 169 ITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
           ITA+EMAEG PP  D+HPMRA+F+IP  P P   +   W+ +F  F+  CLVKN  +R  
Sbjct: 222 ITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRL-KSKKWSKKFQSFIESCLVKNHSQRPA 280

Query: 229 ASEMLNHEFIQR 240
             +++ H FI+ 
Sbjct: 281 TEQLMKHPFIRD 292

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score =  353 bits (907), Expect = e-124
 Identities = 96/260 (36%), Positives = 131/260 (50%), Gaps = 53/260 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-------LRKKTLSEDEIATI 53
           M QC  P +V YY S+    +LW+VM+    GSV DI++        +   L E  IATI
Sbjct: 67  MSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATI 126

Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
           L + L+GLEYLH   +IHRD+KAG                                 NIL
Sbjct: 127 LREVLEGLEYLHKNGQIHRDVKAG---------------------------------NIL 153

Query: 114 LNTEGHAKLADFGVAGQLTDT-----MAKRNTVIGTPFWMAPEVIQEI-GYDCVADMWSL 167
           L  +G  ++ADFGV+  L           R T +GTP WMAPEV++++ GYD  AD+WS 
Sbjct: 154 LGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSF 213

Query: 168 GITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDV-------WTPEFIDFVSRCLV 220
           GITA+E+A G  PY    PM+ + +     PPS             +   F   +S CL 
Sbjct: 214 GITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQ 273

Query: 221 KNPEERATASEMLNHEFIQR 240
           K+PE+R TA+E+L H+F Q+
Sbjct: 274 KDPEKRPTAAELLRHKFFQK 293

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score =  328 bits (843), Expect = e-114
 Identities = 80/256 (31%), Positives = 117/256 (45%), Gaps = 45/256 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGS---VSDIMRLRKKTLSEDEIATILCDT 57
           M+  D PY+V++YG+ F+  D WI ME            +  +    + E+ +  I   T
Sbjct: 75  MRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLAT 134

Query: 58  LKGLEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
           +K L +L    KI HRDIK                                   NILL+ 
Sbjct: 135 VKALNHLKENLKIIHRDIKPS---------------------------------NILLDR 161

Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ----EIGYDCVADMWSLGITAL 172
            G+ KL DFG++GQL D++AK     G   +MAPE I       GYD  +D+WSLGIT  
Sbjct: 162 SGNIKLCDFGISGQLVDSIAKTRDA-GCRPYMAPERIDPSASRQGYDVRSDVWSLGITLY 220

Query: 173 EMAEGKPPYGDIHPM-RAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATA 229
           E+A G+ PY   + +   +  +    PP     E   ++P FI+FV+ CL K+  +R   
Sbjct: 221 ELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKY 280

Query: 230 SEMLNHEFIQRHDTDP 245
            E+L H FI  ++   
Sbjct: 281 KELLKHPFILMYEERA 296

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score =  329 bits (846), Expect = e-113
 Identities = 64/300 (21%), Positives = 113/300 (37%), Gaps = 86/300 (28%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLK 59
            +  + P +V Y  ++  + +LW+V  +   GS  D++       ++E  IA IL   LK
Sbjct: 80  SKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLK 139

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            L+Y+H    +HR +KA                                  +IL++ +G 
Sbjct: 140 ALDYIHHMGYVHRSVKAS---------------------------------HILISVDGK 166

Query: 120 AKLADFGVAGQLTDTMAKRNTV-------IGTPFWMAPEVIQE--IGYDCVADMWSLGIT 170
             L+       +     ++  V       +    W++PEV+Q+   GYD  +D++S+GIT
Sbjct: 167 VYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGIT 226

Query: 171 ALEMAEGKPPYGDIHPMRAIFMIPTKPPPS------------------------------ 200
           A E+A G  P+ D+   + +        P                               
Sbjct: 227 ACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLT 286

Query: 201 -------------FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ 247
                              ++P F  FV +CL +NP+ R +AS +LNH F ++     S+
Sbjct: 287 TSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIKRRASE 346

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score =  321 bits (824), Expect = e-111
 Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 42/252 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++  D PY+V+ +G++  NTD++I ME  G  +   + +  +  + E  +  +    +K 
Sbjct: 78  LKSHDCPYIVQCFGTFITNTDVFIAMELMGTCA-EKLKKRMQGPIPERILGKMTVAIVKA 136

Query: 61  LEYLHLRRK-IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  +   IHRD+                                 K  NILL+  G 
Sbjct: 137 LYYLKEKHGVIHRDV---------------------------------KPSNILLDERGQ 163

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----EIGYDCVADMWSLGITALEM 174
            KL DFG++G+L D  AK  +  G   +MAPE I      +  YD  AD+WSLGI+ +E+
Sbjct: 164 IKLCDFGISGRLVDDKAKDRSA-GCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVEL 222

Query: 175 AEGKPPYGDIHP-MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           A G+ PY +       +  +  + PP       ++ +F  FV  CL K+  +R   +++L
Sbjct: 223 ATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLL 282

Query: 234 NHEFIQRHDTDP 245
            H FI+R++T  
Sbjct: 283 EHSFIKRYETLE 294

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score =  317 bits (815), Expect = e-110
 Identities = 79/254 (31%), Positives = 122/254 (48%), Gaps = 45/254 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDT 57
           M+  D P+ V +YG+ F+  D+WI ME     S+    +    + +T+ ED +  I    
Sbjct: 60  MRTVDCPFTVTFYGALFREGDVWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSI 118

Query: 58  LKGLEYLHLRRK-IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
           +K LE+LH +   IHRD+K                                   N+L+N 
Sbjct: 119 VKALEHLHSKLSVIHRDVKPS---------------------------------NVLINA 145

Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI----QEIGYDCVADMWSLGITAL 172
            G  K+ DFG++G L D +AK +   G   +MAPE I     + GY   +D+WSLGIT +
Sbjct: 146 LGQVKMCDFGISGYLVDDVAK-DIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMI 204

Query: 173 EMAEGKPPYGDI-HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
           E+A  + PY     P + +  +  +P P     D ++ EF+DF S+CL KN +ER T  E
Sbjct: 205 ELAILRFPYDSWGTPFQQLKQVVEEPSPQL-PADKFSAEFVDFTSQCLKKNSKERPTYPE 263

Query: 232 MLNHEFIQRHDTDP 245
           ++ H F   H++  
Sbjct: 264 LMQHPFFTLHESKG 277

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score =  316 bits (811), Expect = e-109
 Identities = 66/249 (26%), Positives = 95/249 (38%), Gaps = 40/249 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
                SP +V  YG+  +   + I ME    GS+  +++ +   L ED     L   L+G
Sbjct: 104 CAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIK-QMGCLPEDRALYYLGQALEG 162

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-H 119
           LEYLH RR +H D+KA                                  N+LL+++G  
Sbjct: 163 LEYLHTRRILHGDVKAD---------------------------------NVLLSSDGSR 189

Query: 120 AKLADFGVAGQLTD-----TMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           A L DFG A  L       ++   + + GT   MAPEV+     D   D+WS     L M
Sbjct: 190 AALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHM 249

Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
             G  P+           I ++PPP    P    P     +   L K P  RA+A E+  
Sbjct: 250 LNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRR 309

Query: 235 HEFIQRHDT 243
                  + 
Sbjct: 310 KVGKALQEV 318

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score =  296 bits (760), Expect = e-100
 Identities = 86/288 (29%), Positives = 136/288 (47%), Gaps = 80/288 (27%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++ +   + E  +  +    +KG
Sbjct: 85  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPEQILGKVSIAVIKG 143

Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + KI HRD+K                                   NIL+N+ G 
Sbjct: 144 LTYLREKHKIMHRDVKPS---------------------------------NILVNSRGE 170

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            KL DFGV+GQL D+MA  N+ +GT  +M+PE +Q   Y   +D+WS+G++ +EMA G+ 
Sbjct: 171 IKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 228

Query: 180 PY--------------------------------------GDIHPMRAIF----MIPTKP 197
           P                                        D  P  AIF     I  +P
Sbjct: 229 PIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEP 288

Query: 198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
           PP      V++ EF DFV++CL+KNP ERA   +++ H FI+R D + 
Sbjct: 289 PPKL-PSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAEE 335

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score =  285 bits (731), Expect = 3e-97
 Identities = 76/247 (30%), Positives = 119/247 (48%), Gaps = 42/247 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDE--IATILCDTL 58
            +      +V+Y GS+ +N  + I ME    GS+S ++R +   L ++E  I       L
Sbjct: 73  HKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQIL 132

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-E 117
           +GL+YLH  + +HRDIK                                   N+L+NT  
Sbjct: 133 EGLKYLHDNQIVHRDIKGD---------------------------------NVLINTYS 159

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ--EIGYDCVADMWSLGITALEMA 175
           G  K++DFG + +L        T  GT  +MAPE+I     GY   AD+WSLG T +EMA
Sbjct: 160 GVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMA 219

Query: 176 EGKPPYGDI-HPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
            GKPP+ ++  P  A+F +   K  P    P+  + E   F+ +C   +P++RA A+++L
Sbjct: 220 TGKPPFYELGEPQAAMFKVGMFKVHPEI--PESMSAEAKAFILKCFEPDPDKRACANDLL 277

Query: 234 NHEFIQR 240
             EF++ 
Sbjct: 278 VDEFLKV 284

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score =  260 bits (666), Expect = 2e-87
 Identities = 50/246 (20%), Positives = 96/246 (39%), Gaps = 31/246 (12%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT---LSEDEIATILCDT 57
                  +VV+Y+ ++ ++  + I  EYC  GS++D +    +      E E+  +L   
Sbjct: 65  AVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQV 124

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNV-IT-NQIYKTLFRLKAGNILLN 115
            +GL Y+H    +H DIK                  N+ I+   I          +   +
Sbjct: 125 GRGLRYIHSMSLVHMDIKPS----------------NIFISRTSIPNAASEEGDEDDWAS 168

Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEM 174
            +   K+ D G   +++          G   ++A EV+QE   +   AD+++L +T +  
Sbjct: 169 NKVMFKIGDLGHVTRISSP----QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCA 224

Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           A  +P   +         I     P    P V + EF + +   +  +PE R +A  ++ 
Sbjct: 225 AGAEPLPRNGDQW---HEIRQGRLPRI--PQVLSQEFTELLKVMIHPDPERRPSAMALVK 279

Query: 235 HEFIQR 240
           H  +  
Sbjct: 280 HSVLLS 285

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score =  252 bits (645), Expect = 7e-84
 Identities = 58/240 (24%), Positives = 92/240 (38%), Gaps = 40/240 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
            +    P  V+   ++ +   L++  E CG  S+         +L E ++   L DTL  
Sbjct: 111 EKVGQHPCCVRLEQAWEEGGILYLQTELCG-PSLQQHCEAWGASLPEAQVWGYLRDTLLA 169

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L +LH +  +H D+K                                   NI L   G  
Sbjct: 170 LAHLHSQGLVHLDVKPA---------------------------------NIFLGPRGRC 196

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG+  +L  T        G P +MAPE++Q   Y   AD++SLG+T LE+A     
Sbjct: 197 KLGDFGLLVELG-TAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMEL 254

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
                  + +       PP F      + E    +   L  +P+ RATA  +L    +++
Sbjct: 255 PHGGEGWQQLRQG--YLPPEF--TAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQ 310

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score =  246 bits (631), Expect = 4e-82
 Identities = 64/248 (25%), Positives = 105/248 (42%), Gaps = 44/248 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD----LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCD 56
           ++    P +V++Y S+         + +V E   +G++   ++ R K +    + +    
Sbjct: 79  LKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK-RFKVMKIKVLRSWCRQ 137

Query: 57  TLKGLEYLHLRRK--IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
            LKGL++LH R    IHRD+K                                   NI +
Sbjct: 138 ILKGLQFLHTRTPPIIHRDLKCD---------------------------------NIFI 164

Query: 115 NTE-GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALE 173
               G  K+ D G+A     + AK   VIGTP +MAPE+ +E  YD   D+++ G+  LE
Sbjct: 165 TGPTGSVKIGDLGLATLKRASFAK--AVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLE 221

Query: 174 MAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           MA  + PY +      I+   T          V  PE  + +  C+ +N +ER +  ++L
Sbjct: 222 MATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 281

Query: 234 NHEFIQRH 241
           NH F Q  
Sbjct: 282 NHAFFQEE 289

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score =  232 bits (594), Expect = 1e-75
 Identities = 58/242 (23%), Positives = 103/242 (42%), Gaps = 36/242 (14%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           +     P +V+Y  S+ +N  L+IVM+YC  G +   +  +K     ED+I         
Sbjct: 77  LANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICL 136

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            L+++H R+ +HRDI                                 K+ NI L  +G 
Sbjct: 137 ALKHVHDRKILHRDI---------------------------------KSQNIFLTKDGT 163

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            +L DFG+A  L  T+      IGTP++++PE+ +   Y+  +D+W+LG    E+   K 
Sbjct: 164 VQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKH 223

Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
            +        +  I +   P       ++ +    VS+   +NP +R + + +L   FI 
Sbjct: 224 AFEAGSMKNLVLKIISGSFPPV--SLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIA 281

Query: 240 RH 241
           + 
Sbjct: 282 KR 283

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score =  227 bits (581), Expect = 3e-74
 Identities = 65/251 (25%), Positives = 111/251 (44%), Gaps = 39/251 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT---LSEDEIATILCDT 57
           ++Q + P V+KYY S+ ++ +L IV+E   AG +S +++  KK    + E  +       
Sbjct: 86  LKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQL 145

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
              LE++H RR +HRDI                                 K  N+ +   
Sbjct: 146 CSALEHMHSRRVMHRDI---------------------------------KPANVFITAT 172

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           G  KL D G+    +      ++++GTP++M+PE I E GY+  +D+WSLG    EMA  
Sbjct: 173 GVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAAL 232

Query: 178 KPPY-GDIHPMRAIFM-IPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           + P+ GD   + ++   I     P     D ++ E    V+ C+  +PE+R   + + + 
Sbjct: 233 QSPFYGDKMNLYSLCKKIEQCDYPPL-PSDHYSEELRQLVNMCINPDPEKRPDVTYVYDV 291

Query: 236 EFIQRHDTDPS 246
                  T  S
Sbjct: 292 AKRMHACTASS 302

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  215 bits (550), Expect = 9e-70
 Identities = 60/275 (21%), Positives = 103/275 (37%), Gaps = 66/275 (24%)

Query: 1   MQQCDSPYVVKYYGSYF-------------KNTDLWIVMEYCGAGSVSDIMRLRKKTLSE 47
           +   +  YVV+YY ++              K + L+I MEYC  G++ D++         
Sbjct: 56  LASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQR 115

Query: 48  DEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRL 107
           DE   +    L+ L Y+H +  IHRD                                 L
Sbjct: 116 DEYWRLFRQILEALSYIHSQGIIHRD---------------------------------L 142

Query: 108 KAGNILLNTEGHAKLADFGVAGQLTDTMA--------------KRNTVIGTPFWMAPEVI 153
           K  NI ++   + K+ DFG+A  +  ++                  + IGT  ++A EV+
Sbjct: 143 KPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVL 202

Query: 154 QEIG-YDCVADMWSLGITALEMAEGKPPYG--DIHPMRAIFMIPTKPPPSFREPDVWTPE 210
              G Y+   DM+SLGI   EM       G   ++ ++ +  +  + PP F   D     
Sbjct: 203 DGTGHYNEKIDMYSLGIIFFEMIYP-FSTGMERVNILKKLRSVSIEFPPDF--DDNKMKV 259

Query: 211 FIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
               +   +  +P +R  A  +LN  ++     D 
Sbjct: 260 EKKIIRLLIDHDPNKRPGARTLLNSGWLPVKHQDE 294

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score =  210 bits (536), Expect = 8e-68
 Identities = 52/264 (19%), Positives = 94/264 (35%), Gaps = 58/264 (21%)

Query: 1   MQQCDSPYVVKYYGSY----------------FKNTDLWIVMEYCGAGSVSDIMRLRK-K 43
           + + D   +V Y G +                 K   L+I ME+C  G++   +  R+ +
Sbjct: 58  LAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGE 117

Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
            L +     +     KG++Y+H ++ I+RD+K                            
Sbjct: 118 KLDKVLALELFEQITKGVDYIHSKKLINRDLKPS-------------------------- 151

Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD 163
                  NI L      K+ DFG+   L +   KR    GT  +M+PE I    Y    D
Sbjct: 152 -------NIFLVDTKQVKIGDFGLVTSLKNDG-KRTRSKGTLRYMSPEQISSQDYGKEVD 203

Query: 164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP 223
           +++LG+   E+                F             D++  +    + + L K P
Sbjct: 204 LYALGLILAELLHVCDTA---FETSKFFTDLRDGII----SDIFDKKEKTLLQKLLSKKP 256

Query: 224 EERATASEMLNHEFIQRHDTDPSQ 247
           E+R   SE+L    + +   + ++
Sbjct: 257 EDRPNTSEILRTLTVWKKSPEKNE 280

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score =  202 bits (515), Expect = 5e-64
 Identities = 55/256 (21%), Positives = 105/256 (41%), Gaps = 51/256 (19%)

Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           S  +++ Y     +  +++VME      ++  ++ +KK++   E  +   + L+ +  +H
Sbjct: 68  SDKIIRLYDYEITDQYIYMVMECGN-IDLNSWLK-KKKSIDPWERKSYWKNMLEAVHTIH 125

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
               +H D                                 LK  N L+  +G  KL DF
Sbjct: 126 QHGIVHSD---------------------------------LKPANFLI-VDGMLKLIDF 151

Query: 126 GVAGQLTD--TMAKRNTVIGTPFWMAPEVIQEIGYDCV-----------ADMWSLGITAL 172
           G+A Q+    T   +++ +GT  +M PE I+++                +D+WSLG    
Sbjct: 152 GIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILY 211

Query: 173 EMAEGKPPYGDI-HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
            M  GK P+  I + +  +  I   P      PD+   +  D +  CL ++P++R +  E
Sbjct: 212 YMTYGKTPFQQIINQISKLHAI-IDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPE 270

Query: 232 MLNHEFIQRHDTDPSQ 247
           +L H ++Q      +Q
Sbjct: 271 LLAHPYVQIQTHPVNQ 286

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score =  204 bits (521), Expect = 6e-64
 Identities = 51/254 (20%), Positives = 98/254 (38%), Gaps = 47/254 (18%)

Query: 1   MQQCDS-PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           +++ D  P V++Y+ +       +I +E C   ++ + +  +       E  T+L  T  
Sbjct: 71  LRESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTS 129

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL +LH    +HRD                                 LK  NIL++    
Sbjct: 130 GLAHLHSLNIVHRD---------------------------------LKPHNILISMPNA 156

Query: 120 -----AKLADFGVAGQLTD---TMAKRNTVIGTPFWMAPEVIQEI---GYDCVADMWSLG 168
                A ++DFG+  +L     + ++R+ V GT  W+APE++ E          D++S G
Sbjct: 157 HGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAG 216

Query: 169 ITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA 227
                + +EG  P+G     +A  ++                   + + + +  +P++R 
Sbjct: 217 CVFYYVISEGSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRP 276

Query: 228 TASEMLNHEFIQRH 241
           +A  +L H F    
Sbjct: 277 SAKHVLKHPFFWSL 290

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score =  198 bits (506), Expect = 3e-62
 Identities = 54/256 (21%), Positives = 104/256 (40%), Gaps = 51/256 (19%)

Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           S  +++ Y     +  +++VME      ++  ++ +KK++   E  +   + L+ +  +H
Sbjct: 115 SDKIIRLYDYEITDQYIYMVMECGN-IDLNSWLK-KKKSIDPWERKSYWKNMLEAVHTIH 172

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
               +H D                                 LK  N L+  +G  KL DF
Sbjct: 173 QHGIVHSD---------------------------------LKPANFLI-VDGMLKLIDF 198

Query: 126 GVAGQLTD--TMAKRNTVIGTPFWMAPEVIQEIGYDCV-----------ADMWSLGITAL 172
           G+A Q+    T   +++ +G   +M PE I+++                +D+WSLG    
Sbjct: 199 GIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILY 258

Query: 173 EMAEGKPPYGDI-HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
            M  GK P+  I + +  +  I   P      PD+   +  D +  CL ++P++R +  E
Sbjct: 259 YMTYGKTPFQQIINQISKLHAI-IDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPE 317

Query: 232 MLNHEFIQRHDTDPSQ 247
           +L H ++Q      +Q
Sbjct: 318 LLAHPYVQIQTHPVNQ 333

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score =  195 bits (499), Expect = 6e-62
 Identities = 55/260 (21%), Positives = 105/260 (40%), Gaps = 51/260 (19%)

Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           S  +++ Y     +  +++VME      ++  ++ +KK++   E  +   + L+ +  +H
Sbjct: 87  SDKIIRLYDYEITDQYIYMVMECGN-IDLNSWLK-KKKSIDPWERKSYWKNMLEAVHTIH 144

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
               +H D                                 LK  N L+  +G  KL DF
Sbjct: 145 QHGIVHSD---------------------------------LKPANFLI-VDGMLKLIDF 170

Query: 126 GVAGQLTD--TMAKRNTVIGTPFWMAPEVIQEIGYDCV-----------ADMWSLGITAL 172
           G+A Q+    T   +++ +GT  +M PE I+++                +D+WSLG    
Sbjct: 171 GIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILY 230

Query: 173 EMAEGKPPYGDI-HPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
            M  GK P+  I + +  +  I   P      PD+   +  D +  CL ++P++R +  E
Sbjct: 231 YMTYGKTPFQQIINQISKLHAI-IDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPE 289

Query: 232 MLNHEFIQRHDTDPSQNGGK 251
           +L H ++Q      +Q    
Sbjct: 290 LLAHPYVQIQTHPVNQMAKG 309

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score =  193 bits (493), Expect = 2e-61
 Identities = 59/251 (23%), Positives = 101/251 (40%), Gaps = 45/251 (17%)

Query: 1   MQQCDSPYVVKYYGSYF--KNTDLWIVMEYCGAGSVSDIMRLRKKT---LSEDEIATILC 55
           +++   P +V+YY       NT L+IVMEYC  G ++ ++    K    L E+ +  ++ 
Sbjct: 59  LRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMT 118

Query: 56  DTLKGLEYLHLRRK-----IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAG 110
                L+  H R       +HRD+K                                   
Sbjct: 119 QLTLALKECHRRSDGGHTVLHRDLKPA--------------------------------- 145

Query: 111 NILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGIT 170
           N+ L+ + + KL DFG+A  L    +   T +GTP++M+PE +  + Y+  +D+WSLG  
Sbjct: 146 NVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCL 205

Query: 171 ALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
             E+    PP+           I          P  ++ E  + ++R L      R +  
Sbjct: 206 LYELCALMPPFTAFSQKELAGKIREGKFRRI--PYRYSDELNEIITRMLNLKDYHRPSVE 263

Query: 231 EMLNHEFIQRH 241
           E+L +  I  H
Sbjct: 264 EILENPLILEH 274

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score =  174 bits (444), Expect = 8e-54
 Identities = 48/272 (17%), Positives = 89/272 (32%), Gaps = 63/272 (23%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD------------LWIVMEYCGAGSVSDIMRLRKKT--LS 46
           + + + P +V+Y+ ++ +               L+I M+ C   ++ D M  R       
Sbjct: 57  LAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERE 116

Query: 47  EDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFR 106
                 I     + +E+LH +  +HRD                                 
Sbjct: 117 RSVCLHIFLQIAEAVEFLHSKGLMHRD--------------------------------- 143

Query: 107 LKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTV------------IGTPFWMAPEVIQ 154
           LK  NI    +   K+ DFG+   +     ++  +            +GT  +M+PE I 
Sbjct: 144 LKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIH 203

Query: 155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDF 214
              Y    D++SLG+   E+    P    +  +R +  +     P         P     
Sbjct: 204 GNSYSHKVDIFSLGLILFELL--YPFSTQMERVRTLTDVRNLKFP--PLFTQKYPCEYVM 259

Query: 215 VSRCLVKNPEERATASEMLNHEFIQRHDTDPS 246
           V   L  +P ER  A  ++ +   +  D    
Sbjct: 260 VQDMLSPSPMERPEAINIIENAVFEDLDFPGK 291

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score =  158 bits (402), Expect = 2e-47
 Identities = 44/260 (16%), Positives = 86/260 (33%), Gaps = 52/260 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD----LWIVMEYCGAGSVSDIMRLRKKT---LSEDEIATI 53
            +  + P +++      +        W+++ +   G++ + +   K     L+ED+I  +
Sbjct: 80  HRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWL 139

Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
           L    +GLE +H +   HRD+K                                   NIL
Sbjct: 140 LLGICRGLEAIHAKGYAHRDLKPT---------------------------------NIL 166

Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVI---------GTPFWMAPEVIQEIGYDCV--- 161
           L  EG   L D G   Q    +      +          T  + APE+     +  +   
Sbjct: 167 LGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDER 226

Query: 162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVK 221
            D+WSLG     M  G+ PY  +        +  +   S  +    +      ++  +  
Sbjct: 227 TDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTV 286

Query: 222 NPEERATASEMLNHEFIQRH 241
           +P +R     +L+     + 
Sbjct: 287 DPHQRPHIPLLLSQLEALQP 306

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score =  155 bits (393), Expect = 2e-46
 Identities = 62/249 (24%), Positives = 102/249 (40%), Gaps = 45/249 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
                 P +++ YG +   T +++++EY   G+V   ++ +     E   AT + +    
Sbjct: 63  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ-KLSKFDEQRTATYITELANA 121

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L Y H +R IHRD                                 +K  N+LL + G  
Sbjct: 122 LSYCHSKRVIHRD---------------------------------IKPENLLLGSAGEL 148

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ADFG +     +  +R  + GT  ++ PE+I+   +D   D+WSLG+   E   GKPP
Sbjct: 149 KIADFGWSVHAPSS--RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPP 206

Query: 181 YGDIHPM---RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           +         + I  +    P         T    D +SR L  NP +R    E+L H +
Sbjct: 207 FEANTYQETYKRISRVEFTFPDFV------TEGARDLISRLLKHNPSQRPMLREVLEHPW 260

Query: 238 IQRHDTDPS 246
           I  + + PS
Sbjct: 261 ITANSSKPS 269

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score =  152 bits (387), Expect = 2e-45
 Identities = 59/247 (23%), Positives = 108/247 (43%), Gaps = 42/247 (17%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
           P +++ Y  +  +  +++V+E C  G ++  ++ R K  SE+E    +   + G+ YLH 
Sbjct: 71  PSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHS 130

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
              +HRD                                 L   N+LL    + K+ADFG
Sbjct: 131 HGILHRD---------------------------------LTLSNLLLTRNMNIKIADFG 157

Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHP 186
           +A QL     K  T+ GTP +++PE+     +   +D+WSLG     +  G+PP+     
Sbjct: 158 LATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTV 217

Query: 187 M---RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT 243
                 + +   + P         + E  D + + L +NP +R + S +L+H F+ R+ +
Sbjct: 218 KNTLNKVVLADYEMPSFL------SIEAKDLIHQLLRRNPADRLSLSSVLDHPFMSRNSS 271

Query: 244 DPSQNGG 250
             S++ G
Sbjct: 272 TKSKDEG 278

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score =  150 bits (381), Expect = 2e-44
 Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 43/238 (18%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
            +VV ++G +  N  +++V+E C   S+ ++ + R+K L+E E    L   + G +YLH 
Sbjct: 75  QHVVGFHGFFEDNDFVFVVLELCRRRSLLELHK-RRKALTEPEARYYLRQIVLGCQYLHR 133

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
            R IHRD                                 LK GN+ LN +   K+ DFG
Sbjct: 134 NRVIHRD---------------------------------LKLGNLFLNEDLEVKIGDFG 160

Query: 127 VAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHP 186
           +A ++     ++  + GTP ++APEV+ + G+    D+WS+G     +  GKPP+     
Sbjct: 161 LATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL 220

Query: 187 M---RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH 241
                 I          +  P    P     + + L  +P  R T +E+LN EF    
Sbjct: 221 KETYLRIKKN------EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSG 272

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score =  150 bits (380), Expect = 6e-44
 Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 51/248 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
            +     +VV ++G +  N  +++V+E C   S+ ++ + R+K L+E E    L   + G
Sbjct: 95  HRSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHK-RRKALTEPEARYYLRQIVLG 153

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            +YLH  R IHRD                                 LK GN+ LN +   
Sbjct: 154 CQYLHRNRVIHRD---------------------------------LKLGNLFLNEDLEV 180

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+A ++     ++  + GTP ++APEV+ + G+    D+WS+G     +  GKPP
Sbjct: 181 KIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPP 240

Query: 181 YGDIHPM-------RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           +             +  + IP    P               + + L  +P  R T +E+L
Sbjct: 241 FETSCLKETYLRIKKNEYSIPKHINPVAA----------SLIQKMLQTDPTARPTINELL 290

Query: 234 NHEFIQRH 241
           N EF    
Sbjct: 291 NDEFFTSG 298

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score =  148 bits (375), Expect = 2e-43
 Identities = 46/261 (17%), Positives = 82/261 (31%), Gaps = 67/261 (25%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM--RLRKKTLSEDEIATILCDTL 58
           M    +   V           L+I M+ C   ++ D M  R   +         I     
Sbjct: 115 MDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIA 174

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           + +E+LH +  +HRD                                 LK  NI    + 
Sbjct: 175 EAVEFLHSKGLMHRD---------------------------------LKPSNIFFTMDD 201

Query: 119 HAKLADFGVAGQLTDTMAKRNTV------------IGTPFWMAPEVIQEIGYDCVADMWS 166
             K+ DFG+   +     ++  +            +GT  +M+PE I    Y    D++S
Sbjct: 202 VVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFS 261

Query: 167 LGITALEMAEGKPPYGDIHPMRAIFMIPT--------KPPPSFREPDVWTPEFIDFVSRC 218
           LG+   E+         ++                  K P  F +     P+    V   
Sbjct: 262 LGLILFEL---------LYSFSTQMERVRIITDVRNLKFPLLFTQ---KYPQEHMMVQDM 309

Query: 219 LVKNPEERATASEMLNHEFIQ 239
           L  +P ER  A++++ +   +
Sbjct: 310 LSPSPTERPEATDIIENAIFE 330

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  147 bits (373), Expect = 4e-43
 Identities = 55/255 (21%), Positives = 108/255 (42%), Gaps = 45/255 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR--LRKKTLSEDEIATILCDTL 58
           M++   P +V + G+  +  +L IV EY   GS+  ++     ++ L E    ++  D  
Sbjct: 88  MKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVA 147

Query: 59  KGLEYLHLRRK--IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
           KG+ YLH R    +HR+                                 LK+ N+L++ 
Sbjct: 148 KGMNYLHNRNPPIVHRN---------------------------------LKSPNLLVDK 174

Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           +   K+ DFG++     T     +  GTP WMAPEV+++   +  +D++S G+   E+A 
Sbjct: 175 KYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELAT 234

Query: 177 GKPPYGDIHPMRAIFMIPTK---PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
            + P+G+++P + +  +  K          P    P+    +  C    P +R + + ++
Sbjct: 235 LQQPWGNLNPAQVVAAVGFKCKRLEI----PRNLNPQVAAIIEGCWTNEPWKRPSFATIM 290

Query: 234 NH-EFIQRHDTDPSQ 247
           +    + +    P  
Sbjct: 291 DLLRPLIKSAVPPPN 305

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score =  145 bits (368), Expect = 1e-42
 Identities = 50/244 (20%), Positives = 95/244 (38%), Gaps = 45/244 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
                 P +++ Y  +     +++++E+   G +   ++ +     E   AT + +    
Sbjct: 68  QSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQ-KHGRFDEQRSATFMEELADA 126

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L Y H R+ IHRD                                 +K  N+L+  +G  
Sbjct: 127 LHYCHERKVIHRD---------------------------------IKPENLLMGYKGEL 153

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ADFG +        +R T+ GT  ++ PE+I+   +D   D+W  G+   E   G PP
Sbjct: 154 KIADFGWSVHAPSL--RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPP 211

Query: 181 YGDIHPM---RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           +         R I  +  K PP        +    D +S+ L  +P +R     ++ H +
Sbjct: 212 FDSPSHTETHRRIVNVDLKFPPFL------SDGSKDLISKLLRYHPPQRLPLKGVMEHPW 265

Query: 238 IQRH 241
           ++ +
Sbjct: 266 VKAN 269

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score =  148 bits (376), Expect = 2e-42
 Identities = 57/267 (21%), Positives = 97/267 (36%), Gaps = 42/267 (15%)

Query: 1   MQQCDS-PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM------RLRKKTLSEDEIATI 53
           + + D  P V++YY S   +  L+I +E C   ++ D++          K   E    ++
Sbjct: 62  LTESDDHPNVIRYYCSETTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISL 120

Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
           L     G+ +LH  + IHRD+K                      N +  T  R  A    
Sbjct: 121 LRQIASGVAHLHSLKIIHRDLKPQ--------------------NILVSTSSRFTADQQT 160

Query: 114 LNTEGHAKLADFGVAGQLTDTM----AKRNTVIGTPFWMAPEVIQEI-------GYDCVA 162
                   ++DFG+  +L           N   GT  W APE+++E              
Sbjct: 161 GAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSI 220

Query: 163 DMWSLGITALEM-AEGKPPYGD-IHPMRAIFM-IPTKPPPSFREPDVWTPEFIDFVSRCL 219
           D++S+G     + ++GK P+GD       I   I +              E  D +S+ +
Sbjct: 221 DIFSMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMI 280

Query: 220 VKNPEERATASEMLNHEFIQRHDTDPS 246
             +P +R TA ++L H           
Sbjct: 281 DHDPLKRPTAMKVLRHPLFWPKSKKLE 307

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score =  140 bits (354), Expect = 3e-40
 Identities = 50/263 (19%), Positives = 90/263 (34%), Gaps = 70/263 (26%)

Query: 2   QQCDSPYVVKYYGSYF--------KNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIAT 52
           +    P +V++  +             +  ++ E C    V  + ++  +  LS D +  
Sbjct: 81  KLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLK 140

Query: 53  ILCDTLKGLEYLHLRRK--IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAG 110
           I   T + ++++H ++   IHRD                                 LK  
Sbjct: 141 IFYQTCRAVQHMHRQKPPIIHRD---------------------------------LKVE 167

Query: 111 NILLNTEGHAKLADFGVAGQLTDTMAKRN------------TVIGTPFWMAPEVI---QE 155
           N+LL+ +G  KL DFG A  ++                   T   TP +  PE+I     
Sbjct: 168 NLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSN 227

Query: 156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMR---AIFMIPTKPPPSFREPDVWTPEFI 212
                  D+W+LG     +   + P+ D   +R     + IP                F 
Sbjct: 228 FPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVNGKYSIPPHDTQY--------TVFH 279

Query: 213 DFVSRCLVKNPEERATASEMLNH 235
             +   L  NPEER + +E+++ 
Sbjct: 280 SLIRAMLQVNPEERLSIAEVVHQ 302

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score =  140 bits (355), Expect = 4e-40
 Identities = 56/272 (20%), Positives = 85/272 (31%), Gaps = 62/272 (22%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-------LRKKTLSEDEIATI 53
           +    + Y +   G      +++I+ EY    S+                 +    I  I
Sbjct: 97  ITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCI 156

Query: 54  LCDTLKGLEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
           +   L    Y+H  + I HRD                                 +K  NI
Sbjct: 157 IKSVLNSFSYIHNEKNICHRD---------------------------------VKPSNI 183

Query: 113 LLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ--EIGYDCVADMWSLGIT 170
           L++  G  KL+DFG +  + D   K     GT  +M PE             D+WSLGI 
Sbjct: 184 LMDKNGRVKLSDFGESEYMVD--KKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGIC 241

Query: 171 ALEMAEGKPP-YGDIHPM-------RAIFMIPTKPPPSFREPDVW---------TPEFID 213
              M     P    I  +             P                      + E ID
Sbjct: 242 LYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDID 301

Query: 214 FVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
           F+   L KNP ER T+ + L HE++   + + 
Sbjct: 302 FLKLFLRKNPAERITSEDALKHEWLADTNIED 333

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  135 bits (343), Expect = 1e-38
 Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 48/243 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCDTL 58
           + + + P +VK YG+      + +VMEY   GS+ +++   +     +     +      
Sbjct: 55  LSRVNHPNIVKLYGACLNP--VCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCS 112

Query: 59  KGLEYLHLRRK---IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
           +G+ YLH  +    IHRD                                 LK  N+LL 
Sbjct: 113 QGVAYLHSMQPKALIHRD---------------------------------LKPPNLLLV 139

Query: 116 TEG-HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
             G   K+ DFG A  +   M       G+  WMAPEV +   Y    D++S GI   E+
Sbjct: 140 AGGTVLKICDFGTACDIQTHM---TNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEV 196

Query: 175 AEGKPPYGDIH--PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
              + P+ +I     R ++ +     P               ++RC  K+P +R +  E+
Sbjct: 197 ITRRKPFDEIGGPAFRIMWAVHNGTRPPL--IKNLPKPIESLMTRCWSKDPSQRPSMEEI 254

Query: 233 LNH 235
           +  
Sbjct: 255 VKI 257

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score =  137 bits (347), Expect = 1e-38
 Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 57/250 (22%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RLRKKT-LSEDE----IATIL 54
           MQ  + P++V  + S+    D+++V++    G   D+   L++     E+     I  ++
Sbjct: 69  MQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGG---DLRYHLQQNVHFKEETVKLFICELV 125

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
                 L+YL  +R IHRD+K           D                       NILL
Sbjct: 126 M----ALDYLQNQRIIHRDMK----------PD-----------------------NILL 148

Query: 115 NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE---IGYDCVADMWSLGITA 171
           +  GH  + DF +A  L     +  T+ GT  +MAPE+       GY    D WSLG+TA
Sbjct: 149 DEHGHVHITDFNIAAMLPRE-TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTA 207

Query: 172 LEMAEGKPPY---GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-A 227
            E+  G+ PY           +    T        P  W+ E +  + + L  NP++R +
Sbjct: 208 YELLRGRRPYHIRSSTSSKEIVHTFETTVV---TYPSAWSQEMVSLLKKLLEPNPDQRFS 264

Query: 228 TASEMLNHEF 237
             S++ N  +
Sbjct: 265 QLSDVQNFPY 274

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  135 bits (341), Expect = 1e-38
 Identities = 52/255 (20%), Positives = 92/255 (36%), Gaps = 68/255 (26%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   + P +VK YG         +VME+   G +   +  +   +       ++ D   G
Sbjct: 77  MSNLNHPNIVKLYGLMHNP--PRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALG 134

Query: 61  LEYLHLRRK--IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           +EY+  +    +HRD                                 L++ NI L +  
Sbjct: 135 IEYMQNQNPPIVHRD---------------------------------LRSPNIFLQSLD 161

Query: 119 -----HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI--QEIGYDCVADMWSLGITA 171
                 AK+ADFG++ Q   ++   + ++G   WMAPE I  +E  Y   AD +S  +  
Sbjct: 162 ENAPVCAKVADFGLSQQSVHSV---SGLLGNFQWMAPETIGAEEESYTEKADTYSFAMIL 218

Query: 172 LEMAEGKPPYGDIHPMRAIFM-----------IPTKPPPSFREPDVWTPEFIDFVSRCLV 220
             +  G+ P+ +    +  F+           IP   PP  R            +  C  
Sbjct: 219 YTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDCPPRLRN----------VIELCWS 268

Query: 221 KNPEERATASEMLNH 235
            +P++R   S ++  
Sbjct: 269 GDPKKRPHFSYIVKE 283

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score =  135 bits (342), Expect = 2e-38
 Identities = 47/283 (16%), Positives = 87/283 (30%), Gaps = 76/283 (26%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCD 56
           +++ +   +VK +    + T     ++ME+C  GS+  ++        L E E   +L D
Sbjct: 61  LKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRD 120

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
            + G+ +L     +HR+                                 +K GNI+   
Sbjct: 121 VVGGMNHLRENGIVHRN---------------------------------IKPGNIMRVI 147

Query: 117 EGHA----KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI--------GYDCVADM 164
                   KL DFG A +L D   +  ++ GT  ++ P++ +           Y    D+
Sbjct: 148 GEDGQSVYKLTDFGAARELEDDE-QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDL 206

Query: 165 WSLGITALEMAEGKPPYGDIHPMRAIFMI--------------------------PTKPP 198
           WS+G+T    A G  P+      R    +                              P
Sbjct: 207 WSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMP 266

Query: 199 PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH 241
            S              ++  L  + E+     +         H
Sbjct: 267 VSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH 309

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  133 bits (337), Expect = 3e-38
 Identities = 53/248 (21%), Positives = 89/248 (35%), Gaps = 53/248 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
                 P ++   G   K  +L +VME+   G ++ +  L  K +  D +        +G
Sbjct: 60  FAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRV--LSGKRIPPDILVNWAVQIARG 117

Query: 61  LEYLHLRRK---IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           + YLH       IHRD                                 LK+ NIL+  +
Sbjct: 118 MNYLHDEAIVPIIHRD---------------------------------LKSSNILILQK 144

Query: 118 GH--------AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGI 169
                      K+ DFG+A +   T     +  G   WMAPEVI+   +   +D+WS G+
Sbjct: 145 VENGDLSNKILKITDFGLAREWHRTTKM--SAAGAYAWMAPEVIRASMFSKGSDVWSYGV 202

Query: 170 TALEMAEGKPPYGDIHPMRAIFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERA 227
              E+  G+ P+  I  +   + +       P    P      F   +  C   +P  R 
Sbjct: 203 LLWELLTGEVPFRGIDGLAVAYGVAMNKLALPI---PSTCPEPFAKLMEDCWNPDPHSRP 259

Query: 228 TASEMLNH 235
           + + +L+ 
Sbjct: 260 SFTNILDQ 267

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  134 bits (339), Expect = 4e-38
 Identities = 50/267 (18%), Positives = 96/267 (35%), Gaps = 56/267 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
            +Q     VV + G+      L I+   C   ++  ++R  K  L  ++   I  + +KG
Sbjct: 83  YRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKG 142

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH +  +H+D                                 LK+ N+  +  G  
Sbjct: 143 MGYLHAKGILHKD---------------------------------LKSKNVFYD-NGKV 168

Query: 121 KLADFGVAGQLTDTMAKRNT-----VIGTPFWMAPEVIQEIG---------YDCVADMWS 166
            + DFG+        A R         G    +APE+I+++          +   +D+++
Sbjct: 169 VITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFA 228

Query: 167 LGITALEMAEGKPPYGDIHPMRAIFMIP--TKPPPSFREPDVWTP-EFIDFVSRCLVKNP 223
           LG    E+   + P+        I+ +    KP        +    E  D +  C     
Sbjct: 229 LGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNL----SQIGMGKEISDILLFCWAFEQ 284

Query: 224 EERATASEMLNH-EFIQRHDTDPSQNG 249
           EER T +++++  E + + +   S  G
Sbjct: 285 EERPTFTKLMDMLEKLPKRNRRLSHPG 311

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score =  134 bits (338), Expect = 1e-37
 Identities = 25/255 (9%), Positives = 61/255 (23%), Gaps = 51/255 (20%)

Query: 7   PYVVKYYGSY--FKNTDLWIVMEYCGA-----GSVSDIMRLRKKTLSEDEIATILCDTLK 59
           P   +       +   +  ++M           S  D + + +       +  +    ++
Sbjct: 146 PPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIR 205

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
               L  +  +H                                       N+ +  +G 
Sbjct: 206 LAANLQSKGLVHGHFTPD---------------------------------NLFIMPDGR 232

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ--EIGYDCVADMWSLGITALEMAEG 177
             L D     ++     +         +   E +      +    + W LG++   +   
Sbjct: 233 LMLGDVSALWKVGT---RGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCL 289

Query: 178 KPPYGDIHPM------RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE 231
             P+G + P       R    +P     +F             + R L  +   R    E
Sbjct: 290 FLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLE 349

Query: 232 MLNHEFIQRHDTDPS 246
            +      +   + S
Sbjct: 350 AMETPEFLQLQNEIS 364

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  132 bits (333), Expect = 3e-37
 Identities = 60/260 (23%), Positives = 95/260 (36%), Gaps = 56/260 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  + P V+K+ G  +K+  L  + EY   G++  I++         +  +   D   G
Sbjct: 61  MRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASG 120

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH    IHRD                                 L + N L+    + 
Sbjct: 121 MAYLHSMNIIHRD---------------------------------LNSHNCLVRENKNV 147

Query: 121 KLADFGVA--------------GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWS 166
            +ADFG+A                      KR TV+G P+WMAPE+I    YD   D++S
Sbjct: 148 VVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFS 207

Query: 167 LGITALEMAEGKPPYGDIHPMRAIFMIPTK----PPPSFREPDVWTPEFIDFVSRCLVKN 222
            GI   E+        D  P    F +  +           P    P F     RC   +
Sbjct: 208 FGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYC----PPNCPPSFFPITVRCCDLD 263

Query: 223 PEERATASEMLNH-EFIQRH 241
           PE+R +  ++ +  E ++ H
Sbjct: 264 PEKRPSFVKLEHWLETLRMH 283

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score =  131 bits (333), Expect = 4e-37
 Identities = 54/254 (21%), Positives = 93/254 (36%), Gaps = 43/254 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +       ++  + S+    +L ++ E+     + + +      L+E EI + +    + 
Sbjct: 55  LNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEA 114

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L++LH     H D                                 ++  NI+  T   +
Sbjct: 115 LQFLHSHNIGHFD---------------------------------IRPENIIYQTRRSS 141

Query: 121 --KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
             K+ +FG A QL         +   P + APEV Q        DMWSLG     +  G 
Sbjct: 142 TIKIIEFGQARQLKPG-DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGI 200

Query: 179 PP-YGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLN 234
            P   + +  + I         +F E   +   + E +DFV R LVK  + R TASE L 
Sbjct: 201 NPFLAETN--QQIIENIMNAEYTFDEEA-FKEISIEAMDFVDRLLVKERKSRMTASEALQ 257

Query: 235 HEFIQRHDTDPSQN 248
           H ++++     S  
Sbjct: 258 HPWLKQKIERVSTK 271

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  130 bits (329), Expect = 5e-37
 Identities = 34/237 (14%), Positives = 78/237 (32%), Gaps = 53/237 (22%)

Query: 1   MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDT 57
           ++    P V+   G+          ++  +   GS+ +++       + + +      D 
Sbjct: 61  LRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDM 120

Query: 58  LKGLEYLHLRRK--IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
            +G+ +LH                                           L + +++++
Sbjct: 121 ARGMAFLHTLEPLIPRHA---------------------------------LNSRSVMID 147

Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV---ADMWSLGITAL 172
            +  A+++   V              +  P W+APE +Q+   D     ADMWS  +   
Sbjct: 148 EDMTARISMADVKFSFQSP-----GRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLW 202

Query: 173 EMAEGKPPYGDIHPMRAIFMIPTK---PPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
           E+   + P+ D+  M     +  +   P      P   +P     +  C+ ++P +R
Sbjct: 203 ELVTREVPFADLSNMEIGMKVALEGLRPTI----PPGISPHVSKLMKICMNEDPAKR 255

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score =  134 bits (340), Expect = 7e-37
 Identities = 58/254 (22%), Positives = 107/254 (42%), Gaps = 44/254 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++  D P ++K Y  +    + ++VME    G + D + + +   +E + A I+   L G
Sbjct: 90  LKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEI-IHRMKFNEVDAAVIIKQVLSG 148

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---E 117
           + YLH    +HRD                                 LK  N+LL +   +
Sbjct: 149 VTYLHKHNIVHRD---------------------------------LKPENLLLESKEKD 175

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
              K+ DFG++    +   K    +GT +++APEV+++  YD   D+WS+G+    +  G
Sbjct: 176 ALIKIVDFGLSAVFENQ-KKMKERLGTAYYIAPEVLRK-KYDEKCDVWSIGVILFILLAG 233

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLN 234
            PP+G     + I     K   +F  P+ W   +    D + + L  + + R +A + L 
Sbjct: 234 YPPFGGQTD-QEILRKVEKGKYTFDSPE-WKNVSEGAKDLIKQMLQFDSQRRISAQQALE 291

Query: 235 HEFIQRHDTDPSQN 248
           H +I+   +     
Sbjct: 292 HPWIKEMCSKKESG 305

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  130 bits (328), Expect = 1e-36
 Identities = 54/249 (21%), Positives = 96/249 (38%), Gaps = 43/249 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++     ++ + G       L IV ++C   S+   +   +      ++  I   T +G
Sbjct: 74  LRKTRHVNILLFMGYSTAP-QLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARG 132

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YLH +  IHRD                                 LK+ NI L+ +   
Sbjct: 133 MDYLHAKSIIHRD---------------------------------LKSNNIFLHEDNTV 159

Query: 121 KLADFGVAG--QLTDTMAKRNTVIGTPFWMAPEVIQEIG---YDCVADMWSLGITALEMA 175
           K+ DFG+A          +   + G+  WMAPEVI+      Y   +D+++ GI   E+ 
Sbjct: 160 KIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELM 219

Query: 176 EGKPPYGDIHPMRAI-FMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            G+ PY +I+    I  M+      P   +            ++ CL K  +ER +   +
Sbjct: 220 TGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRI 279

Query: 233 LNH-EFIQR 240
           L   E + R
Sbjct: 280 LAEIEELAR 288

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score =  131 bits (331), Expect = 1e-36
 Identities = 58/259 (22%), Positives = 96/259 (37%), Gaps = 49/259 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK-----TLSEDEIATILC 55
                 P++V+   +Y  +  L++V E+     +     + K+       SE   +  + 
Sbjct: 80  CHMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCF--EIVKRADAGFVYSEAVASHYMR 137

Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
             L+ L Y H    IHRD                                 +K   +LL 
Sbjct: 138 QILEALRYCHDNNIIHRD---------------------------------VKPHCVLLA 164

Query: 116 TEGHA---KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITAL 172
           ++ ++   KL  FGVA QL ++       +GTP +MAPEV++   Y    D+W  G+   
Sbjct: 165 SKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILF 224

Query: 173 EMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATA 229
            +  G  P+        +F    K          W   +    D V R L+ +P ER T 
Sbjct: 225 ILLSGCLPFYGTKER--LFEGIIKGKYKMNPRQ-WSHISESAKDLVRRMLMLDPAERITV 281

Query: 230 SEMLNHEFIQRHDTDPSQN 248
            E LNH +++  D    + 
Sbjct: 282 YEALNHPWLKERDRYAYKI 300

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score =  131 bits (330), Expect = 1e-36
 Identities = 58/300 (19%), Positives = 91/300 (30%), Gaps = 91/300 (30%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK----------------- 43
           M++   P + + Y  Y     + +VME C  G + D + +                    
Sbjct: 82  MKKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICP 141

Query: 44  ----------------------TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
                                    E  I+ I+      L YLH +   HRD        
Sbjct: 142 CPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRD-------- 193

Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA--KLADFGVA----GQLTDTM 135
                                    +K  N L +T      KL DFG++           
Sbjct: 194 -------------------------IKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEY 228

Query: 136 AKRNTVIGTPFWMAPEVIQEIG--YDCVADMWSLGITALEMAEGKPP-YGDIHP--MRAI 190
               T  GTP+++APEV+      Y    D WS G+    +  G  P  G      +  +
Sbjct: 229 YGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQV 288

Query: 191 FMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ 247
                     F  P+ +   +P   D +S  L +N +ER  A   L H +I +      +
Sbjct: 289 ----LNKKLCFENPN-YNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQFSDKIYK 343

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score =  131 bits (332), Expect = 2e-36
 Identities = 46/277 (16%), Positives = 86/277 (31%), Gaps = 76/277 (27%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKT--LSEDEIATILCD 56
           +++ +   +VK +    + T     ++ME+C  GS+  ++        L E E   +L D
Sbjct: 61  LKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRD 120

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
            + G+ +L     +HR+                                 +K GNI+   
Sbjct: 121 VVGGMNHLRENGIVHRN---------------------------------IKPGNIMRVI 147

Query: 117 EGHA----KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI--------GYDCVADM 164
                   KL DFG A +L D   +  ++ GT  ++ P++ +           Y    D+
Sbjct: 148 GEDGQSVYKLTDFGAARELEDDE-QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDL 206

Query: 165 WSLGITALEMAEGKPPYGDIHPMRAIFMI--------------------------PTKPP 198
           WS+G+T    A G  P+      R    +                              P
Sbjct: 207 WSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMP 266

Query: 199 PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
            S              ++  L  + E+     +    
Sbjct: 267 VSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAE 303

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score =  130 bits (330), Expect = 2e-36
 Identities = 57/254 (22%), Positives = 95/254 (37%), Gaps = 43/254 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D   +++ Y ++    D+ +VMEY   G + D +      L+E +    +    +G
Sbjct: 140 MNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEG 199

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + ++H    +H D                                 LK  NIL       
Sbjct: 200 IRHMHQMYILHLD---------------------------------LKPENILCVNRDAK 226

Query: 121 --KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
             K+ DFG+A +      K     GTP ++APEV+         DMWS+G+ A  +  G 
Sbjct: 227 QIKIIDFGLARRYKPR-EKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGL 285

Query: 179 PP-YGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLN 234
            P  GD                   + + +   + E  +F+S+ L+K    R +ASE L 
Sbjct: 286 SPFLGDND--AETLNNILACRWDLEDEE-FQDISEEAKEFISKLLIKEKSWRISASEALK 342

Query: 235 HEFIQRHDTDPSQN 248
           H ++  H      +
Sbjct: 343 HPWLSDHKLHSRLS 356

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score =  132 bits (334), Expect = 5e-36
 Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 44/254 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++  D P ++K +  +      ++V E+   G + + + + +    E + A I+   L G
Sbjct: 100 LKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQI-INRHKFDECDAANIMKQILSG 158

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---E 117
           + YLH    +HRD                                 +K  NILL      
Sbjct: 159 ICYLHKHNIVHRD---------------------------------IKPENILLENKNSL 185

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
            + K+ DFG++   +    K    +GT +++APEV+++  Y+   D+WS G+    +  G
Sbjct: 186 LNIKIVDFGLSSFFSKD-YKLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCG 243

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLN 234
            PP+G     + I     K    F   D W   + E  + +   L  +  +R TA E LN
Sbjct: 244 YPPFGG-QNDQDIIKKVEKGKYYFDFND-WKNISDEAKELIKLMLTYDYNKRCTAEEALN 301

Query: 235 HEFIQRHDTDPSQN 248
             +I+++  + +++
Sbjct: 302 SRWIKKYANNINKS 315

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score =  128 bits (325), Expect = 6e-36
 Identities = 59/262 (22%), Positives = 94/262 (35%), Gaps = 50/262 (19%)

Query: 1   MQQCDS-PYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTL 58
           ++ C+  P +VK +  +      ++VME    G + + I   +KK  SE E + I+   +
Sbjct: 59  LKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERI--KKKKHFSETEASYIMRKLV 116

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             + ++H    +HRD                                 LK  N+L   E 
Sbjct: 117 SAVSHMHDVGVVHRD---------------------------------LKPENLLFTDEN 143

Query: 119 HA---KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
                K+ DFG A           T   T  + APE++ + GYD   D+WSLG+    M 
Sbjct: 144 DNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTML 203

Query: 176 EGKPP-YGD-----IHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEER 226
            G+ P               I     K   SF     W   + E  D +   L  +P +R
Sbjct: 204 SGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEA-WKNVSQEAKDLIQGLLTVDPNKR 262

Query: 227 ATASEMLNHEFIQRHDTDPSQN 248
              S +  +E++Q      S  
Sbjct: 263 LKMSGLRYNEWLQDGSQLSSNP 284

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score =  131 bits (332), Expect = 7e-36
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 44/254 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q D P ++K Y  +      ++V E    G + D + + +K  SE + A I+   L G
Sbjct: 80  LKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEI-ISRKRFSEVDAARIIRQVLSG 138

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---E 117
           + Y+H  + +HRD                                 LK  N+LL +   +
Sbjct: 139 ITYMHKNKIVHRD---------------------------------LKPENLLLESKSKD 165

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
            + ++ DFG++     +  K    IGT +++APEV+    YD   D+WS G+    +  G
Sbjct: 166 ANIRIIDFGLSTHFEAS-KKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSG 223

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLN 234
            PP+   +    I     K   +F  P  W   +    D + + L   P  R +A + L+
Sbjct: 224 CPPFNGANE-YDILKKVEKGKYTFELPQ-WKKVSESAKDLIRKMLTYVPSMRISARDALD 281

Query: 235 HEFIQRHDTDPSQN 248
           HE+IQ +  +    
Sbjct: 282 HEWIQTYTKEQISV 295

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score =  130 bits (328), Expect = 7e-36
 Identities = 48/254 (18%), Positives = 96/254 (37%), Gaps = 43/254 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q   P ++  + ++    ++ +++E+   G + D +      +SE E+   +    +G
Sbjct: 102 MNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEG 161

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L+++H    +H D                                 +K  NI+  T+  +
Sbjct: 162 LKHMHEHSIVHLD---------------------------------IKPENIMCETKKAS 188

Query: 121 --KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
             K+ DFG+A +L            T  + APE++         DMW++G+    +  G 
Sbjct: 189 SVKIIDFGLATKLNPD-EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGL 247

Query: 179 PP-YGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLN 234
            P  G+            +    F E   +   +PE  DF+   L K P +R T  + L 
Sbjct: 248 SPFAGEDD--LETLQNVKRCDWEFDEDA-FSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304

Query: 235 HEFIQRHDTDPSQN 248
           H +++   ++ +  
Sbjct: 305 HPWLKGDHSNLTSR 318

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score =  132 bits (333), Expect = 1e-35
 Identities = 48/254 (18%), Positives = 90/254 (35%), Gaps = 43/254 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M     P +V  + ++  + ++ ++ E+   G + + +      +SEDE    +    KG
Sbjct: 208 MSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKG 267

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L ++H    +H D                                 LK  NI+  T+   
Sbjct: 268 LCHMHENNYVHLD---------------------------------LKPENIMFTTKRSN 294

Query: 121 --KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
             KL DFG+   L           GT  + APEV +        DMWS+G+ +  +  G 
Sbjct: 295 ELKLIDFGLTAHLDPK-QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGL 353

Query: 179 PP-YGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLN 234
            P  G+                +  +   +   + +  DF+ + L+ +P  R T  + L 
Sbjct: 354 SPFGGEND--DETLRNVKSCDWNMDDSA-FSGISEDGKDFIRKLLLADPNTRMTIHQALE 410

Query: 235 HEFIQRHDTDPSQN 248
           H ++   +     +
Sbjct: 411 HPWLTPGNAPGRDS 424

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score =  126 bits (320), Expect = 1e-35
 Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 48/256 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLK 59
           M+  D P +++ Y ++  NTD+++VME C  G + + +  + K+   E + A I+ D L 
Sbjct: 60  MKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERV--VHKRVFRESDAARIMKDVLS 117

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            + Y H     HRD                                 LK  N L  T+  
Sbjct: 118 AVAYCHKLNVAHRD---------------------------------LKPENFLFLTDSP 144

Query: 120 A---KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
               KL DFG+A +         T +GTP++++P+V++   Y    D WS G+    +  
Sbjct: 145 DSPLKLIDFGLAARFKPG-KMMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLC 202

Query: 177 GKPP-YGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEM 232
           G PP          + +   +   +F E D W   +P+    + R L K+P++R T+ + 
Sbjct: 203 GYPPFSAPTDS--EVMLKIREGTFTFPEKD-WLNVSPQAESLIRRLLTKSPKQRITSLQA 259

Query: 233 LNHEFIQRHDTDPSQN 248
           L HE+ ++  +   +N
Sbjct: 260 LEHEWFEKQLSSSPRN 275

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score =  132 bits (333), Expect = 2e-35
 Identities = 55/271 (20%), Positives = 83/271 (30%), Gaps = 66/271 (24%)

Query: 1   MQQCDSPYVVKYY------GSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT--LSEDEIAT 52
           M++ + P VV              N    + MEYC  G +   +   +    L E  I T
Sbjct: 66  MKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRT 125

Query: 53  ILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
           +L D    L YLH  R IHRD                                 LK  NI
Sbjct: 126 LLSDISSALRYLHENRIIHRD---------------------------------LKPENI 152

Query: 113 LLNTEGHA---KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGI 169
           +L         K+ D G A +L          +GT  ++APE++++  Y    D WS G 
Sbjct: 153 VLQPGPQRLIHKIIDLGYAKELDQGE-LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGT 211

Query: 170 TALEMAEGKPPYGDIHPMRAIFMI---------------------PTKPPPSFREPDVWT 208
            A E   G  P+                                  +  P       +  
Sbjct: 212 LAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILA 271

Query: 209 PEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
            +   ++   L+ +  +R T  +  N    Q
Sbjct: 272 GKLERWLQCMLMWHQRQRGTDPQNPNVGCFQ 302

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score =  126 bits (320), Expect = 2e-35
 Identities = 54/257 (21%), Positives = 104/257 (40%), Gaps = 51/257 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLK 59
            ++   P +V+ + S  + +  ++V +    G + + I  + ++  SE + +  +   L+
Sbjct: 59  CRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDI--VAREFYSEADASHCIQQILE 116

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG- 118
            + Y H    +HR+                                 LK  N+LL ++  
Sbjct: 117 SIAYCHSNGIVHRN---------------------------------LKPENLLLASKAK 143

Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
               KLADFG+A ++ D+    +   GTP +++PEV+++  Y    D+W+ G+    +  
Sbjct: 144 GAAVKLADFGLAIEVNDS-EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLV 202

Query: 177 GKPP-YGDIHP--MRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
           G PP + +        I          +  P+ W   TPE    +   L  NP++R TA 
Sbjct: 203 GYPPFWDEDQHRLYAQI----KAGAYDYPSPE-WDTVTPEAKSLIDSMLTVNPKKRITAD 257

Query: 231 EMLNHEFIQRHDTDPSQ 247
           + L   +I   +   S 
Sbjct: 258 QALKVPWICNRERVASA 274

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  127 bits (320), Expect = 2e-35
 Identities = 59/274 (21%), Positives = 88/274 (32%), Gaps = 76/274 (27%)

Query: 1   MQQCDSPYVVKYYGS----YFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCD 56
                   ++ +  S       +T LW++  Y   GS+ D   L+  TL       I+  
Sbjct: 56  TVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDY--LQLTTLDTVSCLRIVLS 113

Query: 57  TLKGLEYLHLRRK--------IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLK 108
              GL +LH+            HRD                                 LK
Sbjct: 114 IASGLAHLHIEIFGTQGKPAIAHRD---------------------------------LK 140

Query: 109 AGNILLNTEGHAKLADFGVA----GQLTDTMAKRNTVIGTPFWMAPEVIQE------IGY 158
           + NIL+   G   +AD G+A              N  +GT  +MAPEV+ E         
Sbjct: 141 SKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDS 200

Query: 159 DCVADMWSLGITALEMA----------EGKPPYGDIHPMRAIFMIPTK--------PP-P 199
               D+W+ G+   E+A          + KPP+ D+ P    F    K        P  P
Sbjct: 201 YKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIP 260

Query: 200 SFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           +    D         +  C  +NP  R TA  + 
Sbjct: 261 NRWFSDPTLTSLAKLMKECWYQNPSARLTALRIK 294

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score =  127 bits (321), Expect = 3e-35
 Identities = 62/257 (24%), Positives = 106/257 (41%), Gaps = 48/257 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLK 59
           +++   P V+  +  Y   TD+ +++E    G + D   L  K++L+E+E    L   L 
Sbjct: 68  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFD--FLAEKESLTEEEATEFLKQILN 125

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ YLH  +  H D                                 LK  NI+L     
Sbjct: 126 GVYYLHSLQIAHFD---------------------------------LKPENIMLLDRNV 152

Query: 120 A----KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
                K+ DFG+A ++     +   + GTP ++APE++        ADMWS+G+    + 
Sbjct: 153 PKPRIKIIDFGLAHKIDFG-NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILL 211

Query: 176 EGKPP-YGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASE 231
            G  P  GD    +      +     F +   +   +    DF+ R LVK+P++R T  +
Sbjct: 212 SGASPFLGDTK--QETLANVSAVNYEFEDEY-FSNTSALAKDFIRRLLVKDPKKRMTIQD 268

Query: 232 MLNHEFIQRHDTDPSQN 248
            L H +I+  DT  + +
Sbjct: 269 SLQHPWIKPKDTQQALS 285

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score =  126 bits (319), Expect = 4e-35
 Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 48/257 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLK 59
           ++Q     V+  +  Y   TD+ +++E    G + D   L +K++LSE+E  + +   L 
Sbjct: 69  LRQVLHHNVITLHDVYENRTDVVLILELVSGGELFD--FLAQKESLSEEEATSFIKQILD 126

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL-NTEG 118
           G+ YLH ++  H D                                 LK  NI+L +   
Sbjct: 127 GVNYLHTKKIAHFD---------------------------------LKPENIMLLDKNI 153

Query: 119 HA---KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
                KL DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    + 
Sbjct: 154 PIPHIKLIDFGLAHEIEDG-VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILL 212

Query: 176 EGKPP-YGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASE 231
            G  P  GD    +      T     F E   +   +    DF+ + LVK   +R T  E
Sbjct: 213 SGASPFLGDTK--QETLANITSVSYDFDEEF-FSHTSELAKDFIRKLLVKETRKRLTIQE 269

Query: 232 MLNHEFIQRHDTDPSQN 248
            L H +I   D   +  
Sbjct: 270 ALRHPWITPVDNQQAMV 286

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score =  131 bits (330), Expect = 4e-35
 Identities = 47/233 (20%), Positives = 80/233 (34%), Gaps = 57/233 (24%)

Query: 7   PYVVKYY-----GSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
           P +V+ +          +   +IVMEY G  S+      + + L   E    L + L  L
Sbjct: 139 PSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKR---SKGQKLPVAEAIAYLLEILPAL 195

Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            YLH    ++ D+K                                   NI+L TE   K
Sbjct: 196 SYLHSIGLVYNDLKPE---------------------------------NIML-TEEQLK 221

Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           L D G   ++         + GTP + APE+++  G     D++++G T   +    P  
Sbjct: 222 LIDLGAVSRINSF----GYLYGTPGFQAPEIVRT-GPTVATDIYTVGRTLAALTLDLPTR 276

Query: 182 GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-ATASEML 233
              +          +  P  +        +   + R +  +P +R  TA EM 
Sbjct: 277 NGRYVDG-----LPEDDPVLKTY----DSYGRLLRRAIDPDPRQRFTTAEEMS 320

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score =  126 bits (318), Expect = 4e-35
 Identities = 67/252 (26%), Positives = 106/252 (42%), Gaps = 55/252 (21%)

Query: 1   MQQCDSPYVVKYYG--SYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL 58
           +++ D P VVK            L++V E    G V ++     K LSED+      D +
Sbjct: 90  LKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEV--PTLKPLSEDQARFYFQDLI 147

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           KG+EYLH ++ IHRD                                 +K  N+L+  +G
Sbjct: 148 KGIEYLHYQKIIHRD---------------------------------IKPSNLLVGEDG 174

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI--GYD-CVADMWSLGITALEMA 175
           H K+ADFGV+ +   + A  +  +GTP +MAPE + E    +     D+W++G+T     
Sbjct: 175 HIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFV 234

Query: 176 EGKPPYGDIHPM-------RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
            G+ P+ D   M             P +P  +         +  D ++R L KNPE R  
Sbjct: 235 FGQCPFMDERIMCLHSKIKSQALEFPDQPDIA--------EDLKDLITRMLDKNPESRIV 286

Query: 229 ASEMLNHEFIQR 240
             E+  H ++ R
Sbjct: 287 VPEIKLHPWVTR 298

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score =  126 bits (319), Expect = 5e-35
 Identities = 58/259 (22%), Positives = 112/259 (43%), Gaps = 50/259 (19%)

Query: 1   MQQCDS-PYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTL 58
           ++   S P V+  +  Y   +++ +++EY   G +    +    + +SE+++  ++   L
Sbjct: 82  LELAKSCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQIL 141

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE- 117
           +G+ YLH    +H D                                 LK  NILL++  
Sbjct: 142 EGVYYLHQNNIVHLD---------------------------------LKPQNILLSSIY 168

Query: 118 --GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
             G  K+ DFG++ ++     +   ++GTP ++APE++         DMW++GI A  + 
Sbjct: 169 PLGDIKIVDFGMSRKIGHA-CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLL 227

Query: 176 EGKPP-YGDIHP--MRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATA 229
               P  G+ +      I    ++    + E   +   +    DF+   LVKNPE+R TA
Sbjct: 228 THTSPFVGEDNQETYLNI----SQVNVDYSEET-FSSVSQLATDFIQSLLVKNPEKRPTA 282

Query: 230 SEMLNHEFIQRHDTDPSQN 248
              L+H ++Q+ D +   +
Sbjct: 283 EICLSHSWLQQWDFENLFH 301

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score =  129 bits (327), Expect = 5e-35
 Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 46/254 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLK 59
           +++ D P ++K +     ++  +IV E    G + D I  +++K  SE + A I+     
Sbjct: 75  LKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEI--IKRKRFSEHDAARIIKQVFS 132

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT--- 116
           G+ Y+H    +HRD                                 LK  NILL +   
Sbjct: 133 GITYMHKHNIVHRD---------------------------------LKPENILLESKEK 159

Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           +   K+ DFG++        K    IGT +++APEV++   YD   D+WS G+    +  
Sbjct: 160 DCDIKIIDFGLSTCFQQN-TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLS 217

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEML 233
           G PP+        I         +F  P  W   + +  D + + L  +P  R TA++ L
Sbjct: 218 GTPPFYG-KNEYDILKRVETGKYAFDLPQ-WRTISDDAKDLIRKMLTFHPSLRITATQCL 275

Query: 234 NHEFIQRHDTDPSQ 247
            H +IQ++ ++   
Sbjct: 276 EHPWIQKYSSETPT 289

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score =  125 bits (316), Expect = 5e-35
 Identities = 61/256 (23%), Positives = 105/256 (41%), Gaps = 48/256 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLK 59
           +++   P ++  +  +   TD+ +++E    G + D   L  K++L+EDE    L   L 
Sbjct: 62  LREIRHPNIITLHDIFENKTDVVLILELVSGGELFD--FLAEKESLTEDEATQFLKQILD 119

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ YLH +R  H D                                 LK  NI+L  +  
Sbjct: 120 GVHYLHSKRIAHFD---------------------------------LKPENIMLLDKNV 146

Query: 120 A----KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
                KL DFG+A ++     +   + GTP ++APE++        ADMWS+G+    + 
Sbjct: 147 PNPRIKLIDFGIAHKIEAG-NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILL 205

Query: 176 EGKPP-YGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASE 231
            G  P  G+    +      +     F E   +   +    DF+ R LVK+P+ R T ++
Sbjct: 206 SGASPFLGETK--QETLTNISAVNYDFDEEY-FSNTSELAKDFIRRLLVKDPKRRMTIAQ 262

Query: 232 MLNHEFIQRHDTDPSQ 247
            L H +I+       +
Sbjct: 263 SLEHSWIKAIRRRNVR 278

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score =  126 bits (318), Expect = 6e-35
 Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 47/247 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDE----IATILCD 56
           M + D P+ VK Y ++  +  L+  + Y   G +   +R +  +  E       A I+  
Sbjct: 84  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIR-KIGSFDETCTRFYTAEIVS- 141

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
               LEYLH +  IHRD                                 LK  NILLN 
Sbjct: 142 ---ALEYLHGKGIIHRD---------------------------------LKPENILLNE 165

Query: 117 EGHAKLADFGVAGQLTD--TMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           + H ++ DFG A  L+     A+ N+ +GT  +++PE++ E      +D+W+LG    ++
Sbjct: 166 DMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQL 225

Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
             G PP+   +    IF    K    F  P+ + P+  D V + LV +  +R    EM  
Sbjct: 226 VAGLPPFRAGNEYL-IFQKIIKLEYDF--PEKFFPKARDLVEKLLVLDATKRLGCEEMEG 282

Query: 235 HEFIQRH 241
           +  ++ H
Sbjct: 283 YGPLKAH 289

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score =  126 bits (319), Expect = 6e-35
 Identities = 67/252 (26%), Positives = 96/252 (38%), Gaps = 46/252 (18%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P ++     Y     +++V E    G + D I  LR+K  SE E + +L    K +EYLH
Sbjct: 76  PNIITLKDVYDDGKYVYVVTELMKGGELLDKI--LRQKFFSEREASAVLFTITKTVEYLH 133

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA----K 121
            +  +HRD                                 LK  NIL   E       +
Sbjct: 134 AQGVVHRD---------------------------------LKPSNILYVDESGNPESIR 160

Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY 181
           + DFG A QL        T   T  ++APEV++  GYD   D+WSLG+    M  G  P+
Sbjct: 161 ICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPF 220

Query: 182 GDIHPM--RAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLNHE 236
            +        I         S      W   +    D VS+ L  +P +R TA+ +L H 
Sbjct: 221 ANGPDDTPEEILARIGSGKFSLSGGY-WNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHP 279

Query: 237 FIQRHDTDPSQN 248
           +I   D  P   
Sbjct: 280 WIVHWDQLPQYQ 291

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score =  125 bits (317), Expect = 1e-34
 Identities = 63/249 (25%), Positives = 104/249 (41%), Gaps = 59/249 (23%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDE----IATILCD 56
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE       A I+  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVL- 152

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
                EYLH    I+RD                                 LK  N+L++ 
Sbjct: 153 ---TFEYLHSLDLIYRD---------------------------------LKPENLLIDQ 176

Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
           +G+ ++ DFG A ++        T+ GTP  +APE+I   GY+   D W+LG+   EMA 
Sbjct: 177 QGYIQVTDFGFAKRVKGRT---WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAA 233

Query: 177 GKPPYGDIHPM---RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----AT 228
           G PP+    P+     I     + P  F      + +  D +   L  +  +R       
Sbjct: 234 GYPPFFADQPIQIYEKIVSGKVRFPSHF------SSDLKDLLRNLLQVDLTKRFGNLKNG 287

Query: 229 ASEMLNHEF 237
            +++ NH++
Sbjct: 288 VNDIKNHKW 296

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score =  124 bits (313), Expect = 1e-34
 Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 45/247 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD---IMRLRKKTLSEDEIATILCDT 57
           ++  D P ++K +  +    +++IVME C  G + +     + R K LSE  +A ++   
Sbjct: 74  LKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQM 133

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           +  L Y H +  +H+D                                 LK  NIL    
Sbjct: 134 MNALAYFHSQHVVHKD---------------------------------LKPENILFQDT 160

Query: 118 GHA---KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
                 K+ DFG+A              GT  +MAPEV +        D+WS G+    +
Sbjct: 161 SPHSPIKIIDFGLAELFKSD-EHSTNAAGTALYMAPEVFKR-DVTFKCDIWSAGVVMYFL 218

Query: 175 AEGKPP-YGDIHPMRAIFMIPTKPPPSF-REPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             G  P  G       +    T   P++  E    TP+ +D + + L K+PE R +A+++
Sbjct: 219 LTGCLPFTGTSLE--EVQQKATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQV 276

Query: 233 LNHEFIQ 239
           L+HE+ +
Sbjct: 277 LHHEWFK 283

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score =  124 bits (313), Expect = 2e-34
 Identities = 71/249 (28%), Positives = 104/249 (41%), Gaps = 48/249 (19%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P +++   +Y  NT  ++V +    G + D +    K TLSE E   I+   L+ +  LH
Sbjct: 84  PNIIQLKDTYETNTFFFLVFDLMKKGELFDYL--TEKVTLSEKETRKIMRALLEVICALH 141

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
               +HRD                                 LK  NILL+ + + KL DF
Sbjct: 142 KLNIVHRD---------------------------------LKPENILLDDDMNIKLTDF 168

Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI------GYDCVADMWSLGITALEMAEGKP 179
           G + QL     K   V GTP ++APE+I+        GY    DMWS G+    +  G P
Sbjct: 169 GFSCQLDPG-EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSP 227

Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEMLNHE 236
           P+     M  +  +       F  P+ W   +    D VSR LV  P++R TA E L H 
Sbjct: 228 PFWHRKQML-MLRMIMSGNYQFGSPE-WDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHP 285

Query: 237 FIQRHDTDP 245
           F Q++  + 
Sbjct: 286 FFQQYVVEE 294

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score =  125 bits (317), Expect = 2e-34
 Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 45/254 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLK 59
            ++   P +V+ + S  + +  ++V +    G + + I+   ++  SE + +  +   L+
Sbjct: 82  CRKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIVA--REFYSEADASHCIQQILE 139

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG- 118
            + Y H    +HR+                                 LK  N+LL ++  
Sbjct: 140 SIAYCHSNGIVHRN---------------------------------LKPENLLLASKAK 166

Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
               KLADFG+A ++ D+    +   GTP +++PEV+++  Y    D+W+ G+    +  
Sbjct: 167 GAAVKLADFGLAIEVNDS-EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLV 225

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEML 233
           G PP+ D    R ++         +  P+ W   TPE    +   L  NP++R TA + L
Sbjct: 226 GYPPFWDEDQHR-LYAQIKAGAYDYPSPE-WDTVTPEAKSLIDSMLTVNPKKRITADQAL 283

Query: 234 NHEFIQRHDTDPSQ 247
              +I   +   S 
Sbjct: 284 KVPWICNRERVASA 297

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score =  125 bits (316), Expect = 2e-34
 Identities = 66/259 (25%), Positives = 106/259 (40%), Gaps = 52/259 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK-TLSEDEIATILCDTLK 59
           ++Q   P ++  +  Y   TD+ +++E    G + D   L +K +LSE+E  + +   L 
Sbjct: 69  LRQVLHPNIITLHDVYENRTDVVLILELVSGGELFD--FLAQKESLSEEEATSFIKQILD 126

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL-NTEG 118
           G+ YLH ++  H D                                 LK  NI+L +   
Sbjct: 127 GVNYLHTKKIAHFD---------------------------------LKPENIMLLDKNI 153

Query: 119 HA---KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
                KL DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    + 
Sbjct: 154 PIPHIKLIDFGLAHEIEDG-VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILL 212

Query: 176 EGKPP-YGDIHP--MRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATA 229
            G  P  GD     +  I    T     F E   +   +    DF+ + LVK   +R T 
Sbjct: 213 SGASPFLGDTKQETLANI----TAVSYDFDEEF-FSQTSELAKDFIRKLLVKETRKRLTI 267

Query: 230 SEMLNHEFIQRHDTDPSQN 248
            E L H +I   DT  +  
Sbjct: 268 QEALRHPWITPVDTQQAMV 286

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score =  123 bits (311), Expect = 3e-34
 Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 48/252 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLK 59
           +++ D P ++K +     ++  +IV E    G + D I  +++K  SE + A I+     
Sbjct: 75  LKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEI--IKRKRFSEHDAARIIKQVFS 132

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG- 118
           G+ Y+H    +HRD                                 LK  NILL ++  
Sbjct: 133 GITYMHKHNIVHRD---------------------------------LKPENILLESKEK 159

Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
               K+ DFG++        K    IGT +++APEV++   YD   D+WS G+    +  
Sbjct: 160 DCDIKIIDFGLSTCFQQN-TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLS 217

Query: 177 GKPP-YGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEM 232
           G PP YG       I         +F  P  W   + +  D + + L  +P  R TA++ 
Sbjct: 218 GTPPFYGKNE--YDILKRVETGKYAFDLPQ-WRTISDDAKDLIRKMLTFHPSLRITATQC 274

Query: 233 LNHEFIQRHDTD 244
           L H +IQ++ ++
Sbjct: 275 LEHPWIQKYSSE 286

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score =  125 bits (315), Expect = 4e-34
 Identities = 27/261 (10%), Positives = 60/261 (22%), Gaps = 62/261 (23%)

Query: 1   MQQCDSPYVVKYYGSY--FKNTDLWIVMEYCGAGSVSDIMRL-----RKKTLSEDEIATI 53
           ++      +++             + +     +   +    L       K+L       +
Sbjct: 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQL 211

Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
               ++ L  LH    +H  ++                                   +I+
Sbjct: 212 TLQVIRLLASLHHYGLVHTYLRPV---------------------------------DIV 238

Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----------EIGYDCVA 162
           L+  G   L  F    +       R     +  +  PE+                     
Sbjct: 239 LDQRGGVFLTGFEHLVRDG----ARVVSSVSRGFEPPELEARRATISYHRDRRTLMTFSF 294

Query: 163 DMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN 222
           D W+LG+    +     P      +     I       FR            +   L   
Sbjct: 295 DAWALGLVIYWIWCADLPITKDAALGGSEWI-------FRSCKNIPQPVRALLEGFLRYP 347

Query: 223 PEERATASEMLNHEFIQRHDT 243
            E+R    + +     ++  T
Sbjct: 348 KEDRLLPLQAMETPEYEQLRT 368

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score =  123 bits (312), Expect = 8e-34
 Identities = 59/251 (23%), Positives = 99/251 (39%), Gaps = 44/251 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLK 59
           + +   P ++K    +   T++ +V+E    G + D I  + K   SE + A  +   L+
Sbjct: 102 LLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRI--VEKGYYSERDAADAVKQILE 159

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG- 118
            + YLH    +HRD                                 LK  N+L  T   
Sbjct: 160 AVAYLHENGIVHRD---------------------------------LKPENLLYATPAP 186

Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
               K+ADFG++  +        TV GTP + APE+++   Y    DMWS+GI    +  
Sbjct: 187 DAPLKIADFGLSKIVEHQ-VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLC 245

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEML 233
           G  P+ D    + +F         F  P  W   +    D V + +V +P++R T  + L
Sbjct: 246 GFEPFYDERGDQFMFRRILNCEYYFISPW-WDEVSLNAKDLVRKLIVLDPKKRLTTFQAL 304

Query: 234 NHEFIQRHDTD 244
            H ++     +
Sbjct: 305 QHPWVTGKAAN 315

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  123 bits (310), Expect = 1e-33
 Identities = 56/274 (20%), Positives = 92/274 (33%), Gaps = 76/274 (27%)

Query: 1   MQQCDSPYVVKYYGS----YFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCD 56
                   ++ +  +        T L+++ +Y   GS+ D   L+  TL    +  +   
Sbjct: 85  TVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDY--LKSTTLDAKSMLKLAYS 142

Query: 57  TLKGLEYLHLRRK--------IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLK 108
           ++ GL +LH             HRD                                 LK
Sbjct: 143 SVSGLCHLHTEIFSTQGKPAIAHRD---------------------------------LK 169

Query: 109 AGNILLNTEGHAKLADFGVA----GQLTDTMAKRNTVIGTPFWMAPEVIQEIG------Y 158
           + NIL+   G   +AD G+A        +     NT +GT  +M PEV+ E         
Sbjct: 170 SKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQS 229

Query: 159 DCVADMWSLGITALEMA----------EGKPPYGDIHPMRAIFMIPTK--------PP-P 199
             +ADM+S G+   E+A          E + PY D+ P    +    +        P  P
Sbjct: 230 YIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFP 289

Query: 200 SFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           +    D    +    ++ C   NP  R TA  + 
Sbjct: 290 NRWSSDECLRQMGKLMTECWAHNPASRLTALRVK 323

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score =  123 bits (310), Expect = 1e-33
 Identities = 60/263 (22%), Positives = 94/263 (35%), Gaps = 51/263 (19%)

Query: 1   MQQC-DSPYVVKYYGSY----FKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATIL 54
             Q    P++V     Y         L I+ME    G +   I     +  +E E A I+
Sbjct: 75  HWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIM 134

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
            D    +++LH     HRD                                 +K  N+L 
Sbjct: 135 RDIGTAIQFLHSHNIAHRD---------------------------------VKPENLLY 161

Query: 115 NTEGHA---KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITA 171
            ++      KL DFG A + T    +  T   TP+++APEV+    YD   DMWSLG+  
Sbjct: 162 TSKEKDAVLKLTDFGFAKETTQNALQ--TPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIM 219

Query: 172 LEMAEGKPPYGDIHPMR---AIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEE 225
             +  G PP+           +          F  P+ W   + +    +   L  +P E
Sbjct: 220 YILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPE-WSEVSEDAKQLIRLLLKTDPTE 278

Query: 226 RATASEMLNHEFIQRHDTDPSQN 248
           R T ++ +NH +I +    P   
Sbjct: 279 RLTITQFMNHPWINQSMVVPQTP 301

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score =  126 bits (318), Expect = 2e-33
 Identities = 58/252 (23%), Positives = 97/252 (38%), Gaps = 59/252 (23%)

Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM----RLRKKTLSEDE----IATI 53
           ++ +S +VV    +Y     L +V+     G   D+      + +    E       A I
Sbjct: 239 EKVNSRFVVSLAYAYETKDALCLVLTLMNGG---DLKFHIYHMGQAGFPEARAVFYAAEI 295

Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
            C    GLE LH  R ++RD                                 LK  NIL
Sbjct: 296 CC----GLEDLHRERIVYRD---------------------------------LKPENIL 318

Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALE 173
           L+  GH +++D G+A  + +        +GT  +MAPEV++   Y    D W+LG    E
Sbjct: 319 LDDHGHIRISDLGLAVHVPEG-QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYE 377

Query: 174 MAEGKPP-YGDIHPMRA--IFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER---- 226
           M  G+ P       ++   +  +  + P  +   + ++P+     S+ L K+P ER    
Sbjct: 378 MIAGQSPFQQRKKKIKREEVERLVKEVPEEY--SERFSPQARSLCSQLLCKDPAERLGCR 435

Query: 227 -ATASEMLNHEF 237
             +A E+  H  
Sbjct: 436 GGSAREVKEHPL 447

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score =  124 bits (313), Expect = 2e-33
 Identities = 64/259 (24%), Positives = 106/259 (40%), Gaps = 48/259 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLK 59
           +++ + P ++K    +F   D +IV+E    G + D ++    K L E          L 
Sbjct: 194 LKKLNHPCIIKIKN-FFDAEDYYIVLELMEGGELFDKVVG--NKRLKEATCKLYFYQMLL 250

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG- 118
            ++YLH    IHRD                                 LK  N+LL+++  
Sbjct: 251 AVQYLHENGIIHRD---------------------------------LKPENVLLSSQEE 277

Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI---GYDCVADMWSLGITALE 173
               K+ DFG +  L +T +   T+ GTP ++APEV+  +   GY+   D WSLG+    
Sbjct: 278 DCLIKITDFGHSKILGET-SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFI 336

Query: 174 MAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
              G PP+ +     ++    T    +F     W   + + +D V + LV +P+ R T  
Sbjct: 337 CLSGYPPFSEHRTQVSLKDQITSGKYNFIPEV-WAEVSEKALDLVKKLLVVDPKARFTTE 395

Query: 231 EMLNHEFIQRHDTDPSQNG 249
           E L H ++Q  D       
Sbjct: 396 EALRHPWLQDEDMKRKFQD 414

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score =  123 bits (310), Expect = 2e-33
 Identities = 62/247 (25%), Positives = 102/247 (41%), Gaps = 54/247 (21%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P+++    SY  ++ +++V +    G + D +    K  LSE E  +I+   L+ + +LH
Sbjct: 160 PHIITLIDSYESSSFMFLVFDLMRKGELFDYL--TEKVALSEKETRSIMRSLLEAVSFLH 217

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
               +HRD                                 LK  NILL+     +L+DF
Sbjct: 218 ANNIVHRD---------------------------------LKPENILLDDNMQIRLSDF 244

Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQ------EIGYDCVADMWSLGITALEMAEGKP 179
           G +  L     K   + GTP ++APE+++        GY    D+W+ G+    +  G P
Sbjct: 245 GFSCHLEPG-EKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSP 303

Query: 180 P-YGDIHP--MRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEML 233
           P +       +R I     +    F  P+ W   +    D +SR L  +PE R TA + L
Sbjct: 304 PFWHRRQILMLRMI----MEGQYQFSSPE-WDDRSSTVKDLISRLLQVDPEARLTAEQAL 358

Query: 234 NHEFIQR 240
            H F +R
Sbjct: 359 QHPFFER 365

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score =  121 bits (306), Expect = 2e-33
 Identities = 54/216 (25%), Positives = 85/216 (39%), Gaps = 40/216 (18%)

Query: 22  LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL 81
           L++ M       ++ ++R R+  L+      I+      L+  H     HRD+K      
Sbjct: 109 LYVDMRLINGVDLAAMLR-RQGPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPE---- 163

Query: 82  VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTD-TMAKRNT 140
                                        NIL++ +  A L DFG+A   TD  + +   
Sbjct: 164 -----------------------------NILVSADDFAYLVDFGIASATTDEKLTQLGN 194

Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY-GD-IHPMRAIFMIPTKPP 198
            +GT ++MAPE   E      AD+++L     E   G PPY GD +  M A       P 
Sbjct: 195 TVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQAI-PR 253

Query: 199 PSFREPDVWTPEFIDFVSRCLVKNPEER-ATASEML 233
           PS   P +    F   ++R + KNPE+R  T  ++ 
Sbjct: 254 PSTVRPGI-PVAFDAVIARGMAKNPEDRYVTCGDLS 288

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score =  124 bits (313), Expect = 2e-33
 Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 50/257 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLK 59
            +    P +V+ + S  +    +++ +    G + + I  + ++  SE + +  +   L+
Sbjct: 64  CRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDI--VAREYYSEADASHCIQQILE 121

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG- 118
            + + H    +HR+                                 LK  N+LL ++  
Sbjct: 122 AVLHCHQMGVVHRN---------------------------------LKPENLLLASKLK 148

Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
               KLADFG+A ++           GTP +++PEV+++  Y    D+W+ G+    +  
Sbjct: 149 GAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLV 208

Query: 177 GKPP-YGDIHP--MRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
           G PP + +      + I          F  P+ W   TPE  D +++ L  NP +R TA+
Sbjct: 209 GYPPFWDEDQHRLYQQI----KAGAYDFPSPE-WDTVTPEAKDLINKMLTINPSKRITAA 263

Query: 231 EMLNHEFIQRHDTDPSQ 247
           E L H +I    T  S 
Sbjct: 264 EALKHPWISHRSTVASC 280

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score =  124 bits (313), Expect = 5e-33
 Identities = 60/258 (23%), Positives = 93/258 (36%), Gaps = 68/258 (26%)

Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM------RLRKKTLSEDE----IA 51
            +  S ++V    ++   TDL +VM     G   DI               E       A
Sbjct: 240 AKVHSRFIVSLAYAFETKTDLCLVMTIMNGG---DIRYHIYNVDEDNPGFQEPRAIFYTA 296

Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
            I+     GLE+LH R  I+RD                                 LK  N
Sbjct: 297 QIVS----GLEHLHQRNIIYRD---------------------------------LKPEN 319

Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITA 171
           +LL+ +G+ +++D G+A +L     K     GTP +MAPE++    YD   D ++LG+T 
Sbjct: 320 VLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTL 379

Query: 172 LEMAEGKPP-YGDIHPM------RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE 224
            EM   + P       +      + +       P  F      +P   DF    L K+PE
Sbjct: 380 YEMIAARGPFRARGEKVENKELKQRVLEQAVTYPDKF------SPASKDFCEALLQKDPE 433

Query: 225 ER-----ATASEMLNHEF 237
           +R      +   +  H  
Sbjct: 434 KRLGFRDGSCDGLRTHPL 451

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score =  122 bits (306), Expect = 6e-33
 Identities = 34/243 (13%), Positives = 69/243 (28%), Gaps = 35/243 (14%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK----KTLSEDEIATILCD 56
           ++       +K+Y ++       +V E    G++ + + L K    K + +  + +    
Sbjct: 121 LKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMR 180

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
            L  +E +H    IH DIK                      N I    F  +      + 
Sbjct: 181 MLYMIEQVHDCEIIHGDIKP--------------------DNFILGNGFLEQDDE--DDL 218

Query: 117 EGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
                L D G +  +              T  +   E++    ++   D + +  T   M
Sbjct: 219 SAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCM 278

Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
             G                  +  P     D+W     +F    L         + ++L 
Sbjct: 279 LFGTYMKVKNEGGECKPEGLFRRLP---HLDMWN----EFFHVMLNIPDCHHLPSLDLLR 331

Query: 235 HEF 237
            + 
Sbjct: 332 QKL 334

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score =  120 bits (304), Expect = 7e-33
 Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 63/251 (25%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RLRK-KTLSEDE----IATIL 54
           +     P++++ +G++     ++++M+Y   G   ++   LRK +           A + 
Sbjct: 60  LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGG---ELFSLLRKSQRFPNPVAKFYAAEVC 116

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
                 LEYLH +  I+RD                                 LK  NILL
Sbjct: 117 L----ALEYLHSKDIIYRD---------------------------------LKPENILL 139

Query: 115 NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           +  GH K+ DFG A  + D      T+ GTP ++APEV+    Y+   D WS GI   EM
Sbjct: 140 DKNGHIKITDFGFAKYVPDVT---YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEM 196

Query: 175 AEGKPPYGDIHPM---RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER----- 226
             G  P+ D + M     I     + PP F        +  D +SR + ++  +R     
Sbjct: 197 LAGYTPFYDSNTMKTYEKILNAELRFPPFF------NEDVKDLLSRLITRDLSQRLGNLQ 250

Query: 227 ATASEMLNHEF 237
               ++ NH +
Sbjct: 251 NGTEDVKNHPW 261

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  121 bits (304), Expect = 9e-33
 Identities = 52/275 (18%), Positives = 87/275 (31%), Gaps = 76/275 (27%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD----LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCD 56
                   ++ +  +  K+      LW+V +Y   GS+ D   L + T++ + +  +   
Sbjct: 90  TVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDY--LNRYTVTVEGMIKLALS 147

Query: 57  TLKGLEYLHLRRK--------IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLK 108
           T  GL +LH+            HRD                                 LK
Sbjct: 148 TASGLAHLHMEIVGTQGKPAIAHRD---------------------------------LK 174

Query: 109 AGNILLNTEGHAKLADFGVA----GQLTDTMAKRNTVIGTPFWMAPEVIQEIG------Y 158
           + NIL+   G   +AD G+A              N  +GT  +MAPEV+ +         
Sbjct: 175 SKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFES 234

Query: 159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFRE--------------P 204
              AD++++G+   E+A      G     +  +       PS  E              P
Sbjct: 235 FKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIP 294

Query: 205 DVWT-----PEFIDFVSRCLVKNPEERATASEMLN 234
           + W            +  C   N   R TA  +  
Sbjct: 295 NRWQSCEALRVMAKIMRECWYANGAARLTALRIKK 329

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score =  121 bits (305), Expect = 2e-32
 Identities = 32/259 (12%), Positives = 65/259 (25%), Gaps = 62/259 (23%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEY----CGAGSVSDIMRL------RKKTLSEDEIATILCD 56
           P   K         D+W++  +        ++     +        K+L       +   
Sbjct: 160 PQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQ 219

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
            ++ L  LH    +H  ++                                   +I+L+ 
Sbjct: 220 VIRLLASLHHYGLVHTYLRPV---------------------------------DIVLDQ 246

Query: 117 EGHAKLADFGVAGQL-TDTMAKRNTVIGTPFWMAPEVI-----QEIGYDCVADMWSLGIT 170
            G   L  F    +     ++        P   A  ++              D W+LG+ 
Sbjct: 247 RGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA 306

Query: 171 ALEMAEGKPPYGD---IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA 227
              +     P  D   +     IF      P   R            +   L    E+R 
Sbjct: 307 IYWIWCADLPNTDDAALGGSEWIFRSCKNIPQPVR----------ALLEGFLRYPKEDRL 356

Query: 228 TASEMLNHEFIQRHDTDPS 246
              + +     ++  T+ S
Sbjct: 357 LPLQAMETPEYEQLRTELS 375

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score =  119 bits (301), Expect = 2e-32
 Identities = 64/256 (25%), Positives = 106/256 (41%), Gaps = 48/256 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLK 59
           +++ + P ++K    +F   D +IV+E    G + D ++    K L E          L 
Sbjct: 69  LKKLNHPCIIKIKN-FFDAEDYYIVLELMEGGELFDKVVG--NKRLKEATCKLYFYQMLL 125

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG- 118
            ++YLH    IHRD                                 LK  N+LL+++  
Sbjct: 126 AVQYLHENGIIHRD---------------------------------LKPENVLLSSQEE 152

Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI---GYDCVADMWSLGITALE 173
               K+ DFG +  L +T +   T+ GTP ++APEV+  +   GY+   D WSLG+    
Sbjct: 153 DCLIKITDFGHSKILGET-SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFI 211

Query: 174 MAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATAS 230
              G PP+ +     ++    T    +F     W   + + +D V + LV +P+ R T  
Sbjct: 212 CLSGYPPFSEHRTQVSLKDQITSGKYNFIPEV-WAEVSEKALDLVKKLLVVDPKARFTTE 270

Query: 231 EMLNHEFIQRHDTDPS 246
           E L H ++Q  D    
Sbjct: 271 EALRHPWLQDEDMKRK 286

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score =  119 bits (300), Expect = 8e-32
 Identities = 61/263 (23%), Positives = 95/263 (36%), Gaps = 50/263 (19%)

Query: 1   MQQC-DSPYVVKYYGSY----FKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATIL 54
             +    P++V+    Y         L IVME    G +   I     +  +E E + I+
Sbjct: 108 HWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIM 167

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
               + ++YLH     HRD                                 +K  N+L 
Sbjct: 168 KSIGEAIQYLHSINIAHRD---------------------------------VKPENLLY 194

Query: 115 NTEGHA---KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITA 171
            ++      KL DFG A + T       T   TP+++APEV+    YD   DMWSLG+  
Sbjct: 195 TSKRPNAILKLTDFGFAKETTSH-NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIM 253

Query: 172 LEMAEGKPPYGDIHPMR---AIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEE 225
             +  G PP+   H +     +          F  P+ W   + E    +   L   P +
Sbjct: 254 YILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPE-WSEVSEEVKMLIRNLLKTEPTQ 312

Query: 226 RATASEMLNHEFIQRHDTDPSQN 248
           R T +E +NH +I +    P   
Sbjct: 313 RMTITEFMNHPWIMQSTKVPQTP 335

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score =  117 bits (295), Expect = 1e-31
 Identities = 56/250 (22%), Positives = 97/250 (38%), Gaps = 48/250 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLK 59
           +++     +V     Y   T  ++VM+    G + D I+   +   +E + + ++   L 
Sbjct: 60  LKKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILE--RGVYTEKDASLVIQQVLS 117

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG- 118
            ++YLH    +HRD                                 LK  N+L  T   
Sbjct: 118 AVKYLHENGIVHRD---------------------------------LKPENLLYLTPEE 144

Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
                + DFG++    + +    T  GTP ++APEV+ +  Y    D WS+G+    +  
Sbjct: 145 NSKIMITDFGLSKMEQNGIMS--TACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLC 202

Query: 177 GKPP-YGDIHPMRAIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEM 232
           G PP Y +      +F    +    F  P  W   +    DF+   L K+P ER T  + 
Sbjct: 203 GYPPFYEETES--KLFEKIKEGYYEFESPF-WDDISESAKDFICHLLEKDPNERYTCEKA 259

Query: 233 LNHEFIQRHD 242
           L+H +I  + 
Sbjct: 260 LSHPWIDGNT 269

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score =  117 bits (296), Expect = 1e-31
 Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 60/251 (23%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RL-RKKTLSEDE----IATIL 54
           +++   P++V    ++     L++++EY   G   ++  +L R+    ED     +A I 
Sbjct: 75  LEEVKHPFIVDLIYAFQTGGKLYLILEYLSGG---ELFMQLEREGIFMEDTACFYLAEIS 131

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
                 L +LH +  I+RD+K           +                       NI+L
Sbjct: 132 M----ALGHLHQKGIIYRDLK----------PE-----------------------NIML 154

Query: 115 NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           N +GH KL DFG+  +        +T  GT  +MAPE++   G++   D WSLG    +M
Sbjct: 155 NHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDM 214

Query: 175 AEGKPP-YGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER----- 226
             G PP  G+     +  I       PP        T E  D + + L +N   R     
Sbjct: 215 LTGAPPFTGENRKKTIDKILKCKLNLPPYL------TQEARDLLKKLLKRNAASRLGAGP 268

Query: 227 ATASEMLNHEF 237
             A E+  H F
Sbjct: 269 GDAGEVQAHPF 279

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score =  117 bits (295), Expect = 2e-31
 Identities = 61/251 (24%), Positives = 99/251 (39%), Gaps = 60/251 (23%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RLRK-KTLSEDE----IATIL 54
           + + + P++VK + ++     L++++++   G   D+  RL K    +E++    +A + 
Sbjct: 80  LVEVNHPFIVKLHYAFQTEGKLYLILDFLRGG---DLFTRLSKEVMFTEEDVKFYLAELA 136

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
                 L++LH    I+RD+K           +                       NILL
Sbjct: 137 L----ALDHLHSLGIIYRDLK----------PE-----------------------NILL 159

Query: 115 NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           + EGH KL DFG++ +  D   K  +  GT  +MAPEV+   G+   AD WS G+   EM
Sbjct: 160 DEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEM 219

Query: 175 AEGKPP-YGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER----- 226
             G  P  G      M  I       P         +PE    +     +NP  R     
Sbjct: 220 LTGTLPFQGKDRKETMTMILKAKLGMPQFL------SPEAQSLLRMLFKRNPANRLGAGP 273

Query: 227 ATASEMLNHEF 237
               E+  H F
Sbjct: 274 DGVEEIKRHSF 284

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score =  116 bits (292), Expect = 3e-31
 Identities = 53/237 (22%), Positives = 96/237 (40%), Gaps = 48/237 (20%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
             +V       ++   ++VMEY    ++S+ +      LS D         L G+++ H 
Sbjct: 71  QNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIE-SHGPLSVDTAINFTNQILDGIKHAHD 129

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
            R +HRDIK                                   NIL+++    K+ DFG
Sbjct: 130 MRIVHRDIKPQ---------------------------------NILIDSNKTLKIFDFG 156

Query: 127 VAGQLTD-TMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY-GDI 184
           +A  L++ ++ + N V+GT  + +PE  +    D   D++S+GI   EM  G+PP+ G+ 
Sbjct: 157 IAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGE- 215

Query: 185 HPMRAIFM------IPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-ATASEMLN 234
             + +I +      +P     +    D+      + + R   K+   R  T  EM +
Sbjct: 216 TAV-SIAIKHIQDSVP--NVTTDVRKDI-PQSLSNVILRATEKDKANRYKTIQEMKD 268

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score =  116 bits (293), Expect = 4e-31
 Identities = 65/251 (25%), Positives = 106/251 (42%), Gaps = 60/251 (23%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RL-RKKTLSEDE----IATIL 54
           +Q    P++     ++  +  L  VMEY   G   ++   L R++  +E+      A I+
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGG---ELFFHLSRERVFTEERARFYGAEIV 115

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
                 LEYLH R  ++RDIK          L+                       N++L
Sbjct: 116 S----ALEYLHSRDVVYRDIK----------LE-----------------------NLML 138

Query: 115 NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
           + +GH K+ DFG+  +     A   T  GTP ++APEV+++  Y    D W LG+   EM
Sbjct: 139 DKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEM 198

Query: 175 AEGKPP-YGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER----- 226
             G+ P Y   H      I M   + P +       +PE    ++  L K+P++R     
Sbjct: 199 MCGRLPFYNQDHERLFELILMEEIRFPRTL------SPEAKSLLAGLLKKDPKQRLGGGP 252

Query: 227 ATASEMLNHEF 237
           + A E++ H F
Sbjct: 253 SDAKEVMEHRF 263

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score =  117 bits (294), Expect = 7e-31
 Identities = 59/253 (23%), Positives = 101/253 (39%), Gaps = 59/253 (23%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDE----IATILC 55
           M   +SP+VV+ + ++  +  L++VMEY   G   D++  +    + E       A ++ 
Sbjct: 123 MAFANSPWVVQLFYAFQDDRYLYMVMEYMPGG---DLVNLMSNYDVPEKWARFYTAEVVL 179

Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
                L+ +H    IHRD+K           D                       N+LL+
Sbjct: 180 ----ALDAIHSMGFIHRDVK----------PD-----------------------NMLLD 202

Query: 116 TEGHAKLADFGVAGQLTDTMAKR-NTVIGTPFWMAPEVIQEIG----YDCVADMWSLGIT 170
             GH KLADFG   ++      R +T +GTP +++PEV++  G    Y    D WS+G+ 
Sbjct: 203 KSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVF 262

Query: 171 ALEMAEGKPPYGDIHPMRAIF---MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER- 226
             EM  G  P+     +   +   M          + D+ + E  + +    + + E R 
Sbjct: 263 LYEMLVGDTPFYADSLVG-TYSKIMNHKNSLTFPDDNDI-SKEAKNLICA-FLTDREVRL 319

Query: 227 --ATASEMLNHEF 237
                 E+  H F
Sbjct: 320 GRNGVEEIKRHLF 332

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score =  114 bits (287), Expect = 1e-30
 Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 49/221 (22%)

Query: 24  IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY 83
           IVMEY    ++ DI+   +  ++      ++ D  + L + H    IHRD+K        
Sbjct: 93  IVMEYVDGVTLRDIVH-TEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPA------ 145

Query: 84  DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA---GQLTDTMAKRNT 140
                                      NI+++     K+ DFG+A       +++ +   
Sbjct: 146 ---------------------------NIMISATNAVKVMDFGIARAIADSGNSVTQTAA 178

Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY-GDIHPMRAIFM-----IP 194
           VIGT  +++PE  +    D  +D++SLG    E+  G+PP+ GD  P+ ++        P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD-SPV-SVAYQHVREDP 236

Query: 195 TKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-ATASEMLN 234
              PPS R   + + +    V + L KNPE R  TA+EM  
Sbjct: 237 --IPPSARHEGL-SADLDAVVLKALAKNPENRYQTAAEMRA 274

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  114 bits (288), Expect = 2e-30
 Identities = 51/266 (19%), Positives = 89/266 (33%), Gaps = 76/266 (28%)

Query: 7   PYVVKYYGS----YFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLE 62
             ++++ G+       + DLW++  +   GS+SD   L+   +S +E+  I     +GL 
Sbjct: 78  ENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDF--LKANVVSWNELCHIAETMARGLA 135

Query: 63  YLHLRRK----------IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
           YLH               HRD                                 +K+ N+
Sbjct: 136 YLHEDIPGLKDGHKPAISHRD---------------------------------IKSKNV 162

Query: 113 LLNTEGHAKLADFGVA--GQLTDTMAKRNTVIGTPFWMAPEVIQ-----EIGYDCVADMW 165
           LL     A +ADFG+A   +   +    +  +GT  +MAPEV++     +       DM+
Sbjct: 163 LLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMY 222

Query: 166 SLGITALEMAEGKPPYGDIHP-MRAIFMIPTKPPPSFRE--------------PDVWTPE 210
           ++G+   E+A                F       PS  +               D W   
Sbjct: 223 AMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKH 282

Query: 211 -----FIDFVSRCLVKNPEERATASE 231
                  + +  C   + E R +A  
Sbjct: 283 AGMAMLCETIEECWDHDAEARLSAGC 308

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score =  114 bits (288), Expect = 3e-30
 Identities = 59/249 (23%), Positives = 94/249 (37%), Gaps = 59/249 (23%)

Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RL-RKKTLSEDE----IATILC 55
           +    P++V  + S+     L+ V++Y   G   ++   L R++   E       A I  
Sbjct: 94  KNVKHPFLVGLHFSFQTADKLYFVLDYINGG---ELFYHLQRERCFLEPRARFYAAEIAS 150

Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
                L YLH    ++RD+K           +                       NILL+
Sbjct: 151 ----ALGYLHSLNIVYRDLK----------PE-----------------------NILLD 173

Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
           ++GH  L DFG+  +  +  +  +T  GTP ++APEV+ +  YD   D W LG    EM 
Sbjct: 174 SQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEML 233

Query: 176 EGKPP-YGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER----AT 228
            G PP Y          I   P +  P+       T      +   L K+  +R      
Sbjct: 234 YGLPPFYSRNTAEMYDNILNKPLQLKPNI------TNSARHLLEGLLQKDRTKRLGAKDD 287

Query: 229 ASEMLNHEF 237
             E+ +H F
Sbjct: 288 FMEIKSHVF 296

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score =  114 bits (288), Expect = 7e-30
 Identities = 64/248 (25%), Positives = 101/248 (40%), Gaps = 53/248 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RL-RKKTLSEDEIATILCDTL 58
           +Q    P++     S+  +  L  VMEY   G   ++   L R++  SED       + +
Sbjct: 202 LQNSRHPFLTALKYSFQTHDRLCFVMEYANGG---ELFFHLSRERVFSEDRARFYGAEIV 258

Query: 59  KGLEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
             L+YLH  + + +RD                                 LK  N++L+ +
Sbjct: 259 SALDYLHSEKNVVYRD---------------------------------LKLENLMLDKD 285

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEG 177
           GH K+ DFG+  +     A   T  GTP ++APEV+++  Y    D W LG+   EM  G
Sbjct: 286 GHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG 345

Query: 178 KPP-YGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATA 229
           + P Y   H      I M   + P +        PE    +S  L K+P++R       A
Sbjct: 346 RLPFYNQDHEKLFELILMEEIRFPRTL------GPEAKSLLSGLLKKDPKQRLGGGSEDA 399

Query: 230 SEMLNHEF 237
            E++ H F
Sbjct: 400 KEIMQHRF 407

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score =  114 bits (287), Expect = 8e-30
 Identities = 63/258 (24%), Positives = 102/258 (39%), Gaps = 63/258 (24%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK---TLSEDE----IATI 53
           +   D  ++ + + ++     L++VMEY   G   D++ L  K    +  +     +A I
Sbjct: 115 LVNGDRRWITQLHFAFQDENYLYLVMEYYVGG---DLLTLLSKFGERIPAEMARFYLAEI 171

Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
           +      ++ +H    +HRDIK           D                       NIL
Sbjct: 172 VM----AIDSVHRLGYVHRDIK----------PD-----------------------NIL 194

Query: 114 LNTEGHAKLADFGVAGQL-TDTMAKRNTVIGTPFWMAPEVIQEIG-------YDCVADMW 165
           L+  GH +LADFG   +L  D   +    +GTP +++PE++Q +G       Y    D W
Sbjct: 195 LDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWW 254

Query: 166 SLGITALEMAEGKPP-YGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN 222
           +LG+ A EM  G+ P Y D        I +   +        +    E  DF+ R L+  
Sbjct: 255 ALGVFAYEMFYGQTPFYADSTAETYGKI-VHYKEHLSLPLVDEGVPEEARDFIQR-LLCP 312

Query: 223 PEER---ATASEMLNHEF 237
           PE R     A +   H F
Sbjct: 313 PETRLGRGGAGDFRTHPF 330

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score =  111 bits (281), Expect = 1e-29
 Identities = 55/273 (20%), Positives = 99/273 (36%), Gaps = 70/273 (25%)

Query: 1   MQQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTL 58
           + QC     V++    + +    ++V E    GS+   I   +++  +E E + ++ D  
Sbjct: 64  LYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHI--HKRRHFNELEASVVVQDVA 121

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             L++LH +   HRD                                 LK  NIL     
Sbjct: 122 SALDFLHNKGIAHRD---------------------------------LKPENILCEHPN 148

Query: 119 HA---KLADFGVAGQLTDTMAKR-------NTVIGTPFWMAPEVI-----QEIGYDCVAD 163
                K+ DF +   +               T  G+  +MAPEV+     +   YD   D
Sbjct: 149 QVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCD 208

Query: 164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPP--------------SFREPDVW-- 207
           +WSLG+    +  G PP+         +      P                F + D W  
Sbjct: 209 LWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKD-WAH 267

Query: 208 -TPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
            +    D +S+ LV++ ++R +A+++L H ++Q
Sbjct: 268 ISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQ 300

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score =  115 bits (290), Expect = 1e-29
 Identities = 58/251 (23%), Positives = 95/251 (37%), Gaps = 66/251 (26%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RLRK-KTLSEDE----IATILCDTL 58
           D P++V    ++     L  +++    G   D+   L +    SE +     A I+    
Sbjct: 250 DCPFIVCMSYAFHTPDKLSFILDLMNGG---DLHYHLSQHGVFSEADMRFYAAEIIL--- 303

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            GLE++H R  ++RD                                 LK  NILL+  G
Sbjct: 304 -GLEHMHNRFVVYRD---------------------------------LKPANILLDEHG 329

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-EIGYDCVADMWSLGITALEMAEG 177
           H +++D G+A   +    K +  +GT  +MAPEV+Q  + YD  AD +SLG    ++  G
Sbjct: 330 HVRISDLGLACDFSK--KKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG 387

Query: 178 KPPYGDIHP------MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER----- 226
             P+            R    +  + P SF      +PE    +   L ++   R     
Sbjct: 388 HSPFRQHKTKDKHEIDRMTLTMAVELPDSF------SPELRSLLEGLLQRDVNRRLGCLG 441

Query: 227 ATASEMLNHEF 237
             A E+    F
Sbjct: 442 RGAQEVKESPF 452

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score =  112 bits (282), Expect = 2e-29
 Identities = 59/246 (23%), Positives = 93/246 (37%), Gaps = 55/246 (22%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RL-RKKTLSEDE----IATILCDTL 58
           + P++ + +  +     L+ VME+   G   D+M  + + +   E       A I+    
Sbjct: 82  NHPFLTQLFCCFQTPDRLFFVMEFVNGG---DLMFHIQKSRRFDEARARFYAAEIIS--- 135

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
             L +LH +  I+RD+K          LD                       N+LL+ EG
Sbjct: 136 -ALMFLHDKGIIYRDLK----------LD-----------------------NVLLDHEG 161

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           H KLADFG+  +         T  GTP ++APE++QE+ Y    D W++G+   EM  G 
Sbjct: 162 HCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGH 221

Query: 179 PP-YGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
            P   +       AI       P           +    +   + KNP  R  +      
Sbjct: 222 APFEAENEDDLFEAILNDEVVYPTWL------HEDATGILKSFMTKNPTMRLGSLTQGGE 275

Query: 236 EFIQRH 241
             I RH
Sbjct: 276 HAILRH 281

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score =  111 bits (280), Expect = 4e-29
 Identities = 61/253 (24%), Positives = 101/253 (39%), Gaps = 67/253 (26%)

Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RLRK-KTLSEDE----IATILCDTLK 59
           SP++V  + ++   T L ++++Y   G   ++   L + +  +E E    +  I+     
Sbjct: 118 SPFLVTLHYAFQTETKLHLILDYINGG---ELFTHLSQRERFTEHEVQIYVGEIVL---- 170

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            LE+LH    I+RDIK          L+                       NILL++ GH
Sbjct: 171 ALEHLHKLGIIYRDIK----------LE-----------------------NILLDSNGH 197

Query: 120 AKLADFGVA-GQLTDTMAKRNTVIGTPFWMAPEVIQEI--GYDCVADMWSLGITALEMAE 176
             L DFG++   + D   +     GT  +MAP++++    G+D   D WSLG+   E+  
Sbjct: 198 VVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLT 257

Query: 177 GKPP-YGDIHP------MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER--- 226
           G  P   D          R I       P         +    D + R L+K+P++R   
Sbjct: 258 GASPFTVDGEKNSQAEISRRILKSEPPYPQEM------SALAKDLIQRLLMKDPKKRLGC 311

Query: 227 --ATASEMLNHEF 237
               A E+  H F
Sbjct: 312 GPRDADEIKEHLF 324

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score =  111 bits (279), Expect = 6e-29
 Identities = 57/246 (23%), Positives = 93/246 (37%), Gaps = 60/246 (24%)

Query: 6   SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RL-RKKTLSEDE----IATILCDTLK 59
            P++ + +  +     L+ VMEY   G   D+M  + +     E       A I      
Sbjct: 80  PPFLTQLHSCFQTMDRLYFVMEYVNGG---DLMYHIQQVGRFKEPHAVFYAAEIAI---- 132

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           GL +L  +  I+RD+K          LD                       N++L++EGH
Sbjct: 133 GLFFLQSKGIIYRDLK----------LD-----------------------NVMLDSEGH 159

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            K+ADFG+  +         T  GTP ++APE+I    Y    D W+ G+   EM  G+ 
Sbjct: 160 IKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQA 219

Query: 180 P-YGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASE 231
           P  G+      ++I       P S       + E +      + K+P +R         +
Sbjct: 220 PFEGEDEDELFQSIMEHNVAYPKSM------SKEAVAICKGLMTKHPGKRLGCGPEGERD 273

Query: 232 MLNHEF 237
           +  H F
Sbjct: 274 IKEHAF 279

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score =  110 bits (278), Expect = 7e-29
 Identities = 61/243 (25%), Positives = 98/243 (40%), Gaps = 56/243 (23%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RL-RKKTLSEDE----IATILCDTL 58
           + P++   + ++    +L+ VMEY   G   D+M  +               A I+    
Sbjct: 76  EHPFLTHMFCTFQTKENLFFVMEYLNGG---DLMYHIQSCHKFDLSRATFYAAEIIL--- 129

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            GL++LH +  ++RD+K          LD                       NILL+ +G
Sbjct: 130 -GLQFLHSKGIVYRDLK----------LD-----------------------NILLDKDG 155

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           H K+ADFG+  +     AK NT  GTP ++APE++    Y+   D WS G+   EM  G+
Sbjct: 156 HIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQ 215

Query: 179 PP-YGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-ATASEMLN 234
            P +G        +I M     P           E  D + +  V+ PE+R     ++  
Sbjct: 216 SPFHGQDEEELFHSIRMDNPFYPRWL------EKEAKDLLVKLFVREPEKRLGVRGDIRQ 269

Query: 235 HEF 237
           H  
Sbjct: 270 HPL 272

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score =  110 bits (276), Expect = 7e-29
 Identities = 50/239 (20%), Positives = 82/239 (34%), Gaps = 50/239 (20%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYC-GAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
             V++    + +     +++E       + D +  R   L E+   +     L+ + + H
Sbjct: 108 SGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGA-LQEELARSFFWQVLEAVRHCH 166

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLAD 124
               +HRD                                 +K  NIL++   G  KL D
Sbjct: 167 NCGVLHRD---------------------------------IKDENILIDLNRGELKLID 193

Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD-CVADMWSLGITALEMAEGKPPYGD 183
           FG    L DT+       GT  +  PE I+   Y    A +WSLGI   +M  G  P+  
Sbjct: 194 FGSGALLKDTVYT--DFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEH 251

Query: 184 IHP-MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH 241
               +R       +           + E    +  CL   P +R T  E+ NH ++Q  
Sbjct: 252 DEEIIRGQVFFRQRV----------SSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDV 300

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score =  110 bits (276), Expect = 8e-29
 Identities = 57/247 (23%), Positives = 100/247 (40%), Gaps = 39/247 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  + P +VK +        L+++MEY   G V D +    + + E E  +     +  
Sbjct: 68  MKILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLVAHGR-MKEKEARSKFRQIVSA 126

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++Y H +R +HRD                                 LKA N+LL+ + + 
Sbjct: 127 VQYCHQKRIVHRD---------------------------------LKAENLLLDADMNI 153

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD-CVADMWSLGITALEMAEGKP 179
           K+ADFG + + T    K +   G P + APE+ Q   YD    D+WSLG+    +  G  
Sbjct: 154 KIADFGFSNEFTVG-GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSL 212

Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           P+   +       +       +R P   + +  + + R LV NP +R T  +++   +I 
Sbjct: 213 PFDGQNLKELRERVLR---GKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWIN 269

Query: 240 RHDTDPS 246
               +  
Sbjct: 270 AGHEEDE 276

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score =  110 bits (277), Expect = 9e-29
 Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 56/254 (22%)

Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RL-RKKTLSEDE----IATILC 55
           Q  + P++V  +  +   + L+ V+EY   G   D+M  + R++ L E+      A I  
Sbjct: 65  QASNHPFLVGLHSCFQTESRLFFVIEYVNGG---DLMFHMQRQRKLPEEHARFYSAEISL 121

Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
                L YLH R  I+RD+K          LD                       N+LL+
Sbjct: 122 ----ALNYLHERGIIYRDLK----------LD-----------------------NVLLD 144

Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
           +EGH KL D+G+  +        +T  GTP ++APE+++   Y    D W+LG+   EM 
Sbjct: 145 SEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMM 204

Query: 176 EGKPPYGDIHPMRA--------IFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA 227
            G+ P+  +             +F +  +       P   + +    +   L K+P+ER 
Sbjct: 205 AGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRI--PRSLSVKAASVLKSFLNKDPKERL 262

Query: 228 TASEMLNHEFIQRH 241
                     IQ H
Sbjct: 263 GCHPQTGFADIQGH 276

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score =  110 bits (276), Expect = 9e-29
 Identities = 53/252 (21%), Positives = 87/252 (34%), Gaps = 56/252 (22%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-----RKKTLSEDEIATILC 55
           + + +   ++K    +       +VME  G+G     + L     R   L E   + I  
Sbjct: 83  LSRVEHANIIKVLDIFENQGFFQLVMEKHGSG-----LDLFAFIDRHPRLDEPLASYIFR 137

Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
             +  + YL L+  IHRD                                 +K  NI++ 
Sbjct: 138 QLVSAVGYLRLKDIIHRD---------------------------------IKDENIVIA 164

Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGITALEM 174
            +   KL DFG A  L        T  GT  + APEV+    Y     +MWSLG+T   +
Sbjct: 165 EDFTIKLIDFGSAAYLERG-KLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTL 223

Query: 175 AEGKPPYGDIHP-MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
              + P+ ++   + A    P               E +  VS  L   PE R T  +++
Sbjct: 224 VFEENPFCELEETVEAAIHPPYLVSK----------ELMSLVSGLLQPVPERRTTLEKLV 273

Query: 234 NHEFIQRHDTDP 245
              ++ +     
Sbjct: 274 TDPWVTQPVNLA 285

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score =  110 bits (276), Expect = 2e-28
 Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 56/254 (22%)

Query: 2   QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RL-RKKTLSEDE----IATILC 55
           Q  + P++V  +  +   + L+ V+EY   G   D+M  + R++ L E+      A I  
Sbjct: 108 QASNHPFLVGLHSCFQTESRLFFVIEYVNGG---DLMFHMQRQRKLPEEHARFYSAEISL 164

Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
                L YLH R  I+RD+K          LD                       N+LL+
Sbjct: 165 ----ALNYLHERGIIYRDLK----------LD-----------------------NVLLD 187

Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
           +EGH KL D+G+  +        +T  GTP ++APE+++   Y    D W+LG+   EM 
Sbjct: 188 SEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMM 247

Query: 176 EGKPPYGDIHPMRA--------IFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA 227
            G+ P+  +             +F +  +       P   + +    +   L K+P+ER 
Sbjct: 248 AGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRI--PRSLSVKAASVLKSFLNKDPKERL 305

Query: 228 TASEMLNHEFIQRH 241
                     IQ H
Sbjct: 306 GCHPQTGFADIQGH 319

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score =  112 bits (280), Expect = 2e-28
 Identities = 55/244 (22%), Positives = 91/244 (37%), Gaps = 52/244 (21%)

Query: 4   CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR--LRKKTLSEDEIATILCDTLKGL 61
              P++ + +  +     L+ VMEY   G   D+M    +     E        +   GL
Sbjct: 399 GKPPFLTQLHSCFQTMDRLYFVMEYVNGG---DLMYHIQQVGRFKEPHAVFYAAEIAIGL 455

Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK 121
            +L  +  I+RD+K          LD                       N++L++EGH K
Sbjct: 456 FFLQSKGIIYRDLK----------LD-----------------------NVMLDSEGHIK 482

Query: 122 LADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP- 180
           +ADFG+  +         T  GTP ++APE+I    Y    D W+ G+   EM  G+ P 
Sbjct: 483 IADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPF 542

Query: 181 YGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEML 233
            G+      ++I       P S       + E +      + K+P +R         ++ 
Sbjct: 543 EGEDEDELFQSIMEHNVAYPKSM------SKEAVAICKGLMTKHPGKRLGCGPEGERDIK 596

Query: 234 NHEF 237
            H F
Sbjct: 597 EHAF 600

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score =  110 bits (277), Expect = 3e-28
 Identities = 56/253 (22%), Positives = 102/253 (40%), Gaps = 55/253 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDE----IATILCD 56
           +   DS ++   + ++  + +L++VM+Y   G +  ++   +  L E+     +A ++  
Sbjct: 128 LVNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVI- 186

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
               ++ +H    +HRDIK           D                       NIL++ 
Sbjct: 187 ---AIDSVHQLHYVHRDIK----------PD-----------------------NILMDM 210

Query: 117 EGHAKLADFGVAGQL-TDTMAKRNTVIGTPFWMAPEVIQEI-----GYDCVADMWSLGIT 170
            GH +LADFG   +L  D   + +  +GTP +++PE++Q +      Y    D WSLG+ 
Sbjct: 211 NGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVC 270

Query: 171 ALEMAEGKPP-YGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER- 226
             EM  G+ P Y +        I     +     +  DV +    D + R L+ + E R 
Sbjct: 271 MYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDV-SENAKDLIRR-LICSREHRL 328

Query: 227 --ATASEMLNHEF 237
                 +   H F
Sbjct: 329 GQNGIEDFKKHPF 341

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  108 bits (272), Expect = 4e-28
 Identities = 50/276 (18%), Positives = 85/276 (30%), Gaps = 87/276 (31%)

Query: 7   PYVVKYYGSYFKNTD-----LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGL 61
             + ++     + T        +VMEY   GS+     L   T        +     +GL
Sbjct: 67  DNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKY--LSLHTSDWVSSCRLAHSVTRGL 124

Query: 62  EYLHLRRK---------IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
            YLH              HRD                                 L + N+
Sbjct: 125 AYLHTELPRGDHYKPAISHRD---------------------------------LNSRNV 151

Query: 113 LLNTEGHAKLADFGVAGQLTDTMAKR--------NTVIGTPFWMAPEVIQEI-------G 157
           L+  +G   ++DFG++ +LT     R         + +GT  +MAPEV++          
Sbjct: 152 LVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXES 211

Query: 158 YDCVADMWSLGITALEMA---EGKPPYGDIHPMRAIFMIPTKPPPSFRE----------- 203
                DM++LG+   E+        P   +   +  F       P+F +           
Sbjct: 212 ALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQR 271

Query: 204 ---PDVWTP------EFIDFVSRCLVKNPEERATAS 230
              P+ W           + +  C  ++ E R TA 
Sbjct: 272 PKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQ 307

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score =  107 bits (270), Expect = 5e-28
 Identities = 50/247 (20%), Positives = 91/247 (36%), Gaps = 42/247 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNT--DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL 58
           +++     V++     +      +++VMEYC  G    +  + +K     +     C  +
Sbjct: 60  LRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLI 119

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
            GLEYLH +  +H+D                                 +K GN+LL T G
Sbjct: 120 DGLEYLHSQGIVHKD---------------------------------IKPGNLLLTTGG 146

Query: 119 HAKLADFGVAGQLTDTMAKR--NTVIGTPFWMAPEVIQEI-GYD-CVADMWSLGITALEM 174
             K++  GVA  L    A     T  G+P +  PE+   +  +     D+WS G+T   +
Sbjct: 147 TLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNI 206

Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
             G  P+   +  +    I       +  P    P   D +   L   P +R +  ++  
Sbjct: 207 TTGLYPFEGDNIYKLFENIGKGS---YAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQ 263

Query: 235 HEFIQRH 241
           H + ++ 
Sbjct: 264 HSWFRKK 270

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score =  106 bits (267), Expect = 2e-27
 Identities = 62/248 (25%), Positives = 103/248 (41%), Gaps = 40/248 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++    P+++K Y      TD+ +V+EY G G + D + + KK ++EDE        +  
Sbjct: 63  LKLLRHPHIIKLYDVITTPTDIVMVIEYAG-GELFDYI-VEKKRMTEDEGRRFFQQIICA 120

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +EY H  + +HRD                                 LK  N+LL+   + 
Sbjct: 121 IEYCHRHKIVHRD---------------------------------LKPENLLLDDNLNV 147

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD-CVADMWSLGITALEMAEGKP 179
           K+ADFG++  +TD      T  G+P + APEVI    Y     D+WS GI    M  G+ 
Sbjct: 148 KIADFGLSNIMTDG-NFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRL 206

Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           P+ D         + +     +  PD  +P     + R +V +P +R T  E+    +  
Sbjct: 207 PFDDEFIPNLFKKVNSC---VYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFN 263

Query: 240 RHDTDPSQ 247
            +  D  +
Sbjct: 264 VNLPDYLR 271

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score =  105 bits (264), Expect = 2e-27
 Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 39/242 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++    P+++K Y      TD ++VMEY   G + D +  +   + E E   +    L  
Sbjct: 65  LKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYI-CKHGRVEEMEARRLFQQILSA 123

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++Y H    +HRD                                 LK  N+LL+   +A
Sbjct: 124 VDYCHRHMVVHRD---------------------------------LKPENVLLDAHMNA 150

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD-CVADMWSLGITALEMAEGKP 179
           K+ADFG++  ++D      T  G+P + APEVI    Y     D+WS G+    +  G  
Sbjct: 151 KIADFGLSNMMSDG-EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTL 209

Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           P+ D H       I       F  P+         +   L  +P +RAT  ++  HE+ +
Sbjct: 210 PFDDEHVPTLFKKIRGG---VFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFK 266

Query: 240 RH 241
           + 
Sbjct: 267 QD 268

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score =  105 bits (264), Expect = 2e-27
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 47/249 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
            +  +   VVK+YG   +    ++ +EYC  G + D +      + E +        + G
Sbjct: 59  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRI-EPDIGMPEPDAQRFFHQLMAG 117

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH     HRD                                 +K  N+LL+   + 
Sbjct: 118 VVYLHGIGITHRD---------------------------------IKPENLLLDERDNL 144

Query: 121 KLADFGVAGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYD-CVADMWSLGITALEMAEG 177
           K++DFG+A        +R  N + GT  ++APE+++   +     D+WS GI    M  G
Sbjct: 145 KISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 204

Query: 178 KPPYGDIH-PMRAIFMI----PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
           + P+       +             P    +        +  + + LV+NP  R T  ++
Sbjct: 205 ELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAP-----LALLHKILVENPSARITIPDI 259

Query: 233 LNHEFIQRH 241
               +  + 
Sbjct: 260 KKDRWYNKP 268

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score =  105 bits (265), Expect = 3e-27
 Identities = 54/246 (21%), Positives = 82/246 (33%), Gaps = 50/246 (20%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEY-CGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH 65
           P V++    +       +V+E    A  + D +  +   L E          +  +++ H
Sbjct: 98  PGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGP-LGEGPSRCFFGQVVAAIQHCH 156

Query: 66  LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLAD 124
            R  +HRD                                 +K  NIL++   G AKL D
Sbjct: 157 SRGVVHRD---------------------------------IKDENILIDLRRGCAKLID 183

Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD-CVADMWSLGITALEMAEGKPPYGD 183
           FG    L D         GT  +  PE I    Y    A +WSLGI   +M  G  P+  
Sbjct: 184 FGSGALLHDEPYT--DFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFER 241

Query: 184 IHP-MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD 242
               + A    P             +P+    + RCL   P  R +  E+L   ++Q   
Sbjct: 242 DQEILEAELHFPAHV----------SPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPA 291

Query: 243 TDPSQN 248
            D   N
Sbjct: 292 EDVPLN 297

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score =  104 bits (261), Expect = 1e-26
 Identities = 49/249 (19%), Positives = 90/249 (36%), Gaps = 47/249 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
            +  +   VVK+YG   +    ++ +EYC  G + D +      + E +        + G
Sbjct: 59  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRI-EPDIGMPEPDAQRFFHQLMAG 117

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH     HRD                                 +K  N+LL+   + 
Sbjct: 118 VVYLHGIGITHRD---------------------------------IKPENLLLDERDNL 144

Query: 121 KLADFGVAGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYD-CVADMWSLGITALEMAEG 177
           K++DFG+A        +R  N + GT  ++APE+++   +     D+WS GI    M  G
Sbjct: 145 KISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 204

Query: 178 KPPYGDIH-PMRAIFMI----PTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
           + P+       +             P    +        +  + + LV+NP  R T  ++
Sbjct: 205 ELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAP-----LALLHKILVENPSARITIPDI 259

Query: 233 LNHEFIQRH 241
               +  + 
Sbjct: 260 KKDRWYNKP 268

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score =  104 bits (262), Expect = 1e-26
 Identities = 61/257 (23%), Positives = 95/257 (36%), Gaps = 61/257 (23%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
            +    P +V++       T L I+MEY   G + + +    +  SEDE        L G
Sbjct: 70  HRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICNAGR-FSEDEARFFFQQLLSG 128

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL--NTEG 118
           + Y H  +  HRD                                 LK  N LL  +   
Sbjct: 129 VSYCHSMQICHRD---------------------------------LKLENTLLDGSPAP 155

Query: 119 HAKLADFGV-AGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD-CVADMWSLGITALEMAE 176
             K+ DFG     +  +  K  + +GTP ++APEV+    YD  +AD+WS G+T   M  
Sbjct: 156 RLKICDFGYSKSSVLHSQPK--STVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLV 213

Query: 177 GKPPYGDIHPM-----------RAIFMIPTKPPPSFREPDVW-TPEFIDFVSRCLVKNPE 224
           G  P+ D                  + IP          D+  +PE    +SR  V +P 
Sbjct: 214 GAYPFEDPEEPRDYRKTIQRILSVKYSIP---------DDIRISPECCHLISRIFVADPA 264

Query: 225 ERATASEMLNHEFIQRH 241
            R +  E+  H +  ++
Sbjct: 265 TRISIPEIKTHSWFLKN 281

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score =  103 bits (258), Expect = 2e-26
 Identities = 62/280 (22%), Positives = 104/280 (37%), Gaps = 75/280 (26%)

Query: 1   MQQCDSPYVVK-----YYGSYFKNTDLWIVMEYCGAGSVSDIMRL----RKKTLSEDEIA 51
           ++  + P VV+           +   + +V E+       D+           L  + I 
Sbjct: 68  LEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD----QDLRTYLDKAPPPGLPAETIK 123

Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
            ++   L+GL++LH    +HRD                                 LK  N
Sbjct: 124 DLMRQFLRGLDFLHANCIVHRD---------------------------------LKPEN 150

Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLG-IT 170
           IL+ + G  KLADFG+A   +  MA    V+ T ++ APEV+ +  Y    DMWS+G I 
Sbjct: 151 ILVTSGGTVKLADFGLARIYSYQMALTPVVV-TLWYRAPEVLLQSTYATPVDMWSVGCIF 209

Query: 171 ALEMAEGKPPY---GDIHPMRAIFMI--------------------PTKPPPSFRE--PD 205
           A EM   KP +    +   +  IF +                    P + P   +   P+
Sbjct: 210 A-EMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPE 268

Query: 206 VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
           +        +   L  NP +R +A   L H ++ + + +P
Sbjct: 269 M-EESGAQLLLEMLTFNPHKRISAFRALQHSYLHKDEGNP 307

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score =  101 bits (253), Expect = 1e-25
 Identities = 60/273 (21%), Positives = 98/273 (35%), Gaps = 69/273 (25%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD---IMRLRKKTLSEDEIATILCDT 57
           +++     +VK Y        L +V E+       D   ++ + +  L      + L   
Sbjct: 54  LKELKHSNIVKLYDVIHTKKRLVLVFEHLD----QDLKKLLDVCEGGLESVTAKSFLLQL 109

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           L G+ Y H RR +HRD                                 LK  N+L+N E
Sbjct: 110 LNGIAYCHDRRVLHRD---------------------------------LKPQNLLINRE 136

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAE 176
           G  K+ADFG+A      + K    I T ++ AP+V+     Y    D+WS+G    EM  
Sbjct: 137 GELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVN 196

Query: 177 GKPPY---GDIHPMRAIFMI----------------------PTKPPPSFRE--PDVWTP 209
           G P +    +   +  IF I                          P  +      +   
Sbjct: 197 GTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGL-DE 255

Query: 210 EFIDFVSRCLVKNPEERATASEMLNHEFIQRHD 242
             ID +S+ L  +P +R TA + L H + + ++
Sbjct: 256 SGIDLLSKMLKLDPNQRITAKQALEHAYFKENN 288

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score =  103 bits (258), Expect = 2e-25
 Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 39/242 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++    P+++K Y      +D+++VMEY   G + D +  +   L E E   +    L G
Sbjct: 70  LKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYI-CKNGRLDEKESRRLFQQILSG 128

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++Y H    +HRD                                 LK  N+LL+   +A
Sbjct: 129 VDYCHRHMVVHRD---------------------------------LKPENVLLDAHMNA 155

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD-CVADMWSLGITALEMAEGKP 179
           K+ADFG++  ++D      T  G+P + APEVI    Y     D+WS G+    +  G  
Sbjct: 156 KIADFGLSNMMSDG-EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTL 214

Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           P+ D H       I       F  P    P  I  +   L  +P +RAT  ++  HE+ +
Sbjct: 215 PFDDDHVPTLFKKICDG---IFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFK 271

Query: 240 RH 241
           + 
Sbjct: 272 QD 273

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score =  100 bits (251), Expect = 2e-25
 Identities = 57/268 (21%), Positives = 91/268 (33%), Gaps = 68/268 (25%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD---IMRLRKKTLSEDEIATILCDT 57
           +++     +V+ +     +  L +V E+C      D           L  + + + L   
Sbjct: 55  LKELKHKNIVRLHDVLHSDKKLTLVFEFCD----QDLKKYFDSCNGDLDPEIVKSFLFQL 110

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           LKGL + H R  +HRD                                 LK  N+L+N  
Sbjct: 111 LKGLGFCHSRNVLHRD---------------------------------LKPQNLLINRN 137

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAE 176
           G  KLA+FG+A      +   +  + T ++  P+V+     Y    DMWS G    E+A 
Sbjct: 138 GELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELAN 197

Query: 177 GKPPY----GDIHPMRAIFMI---PT-------------KPPPSFREPDVWTPEF----- 211
              P          ++ IF +   PT             KP P +               
Sbjct: 198 AGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNA 257

Query: 212 --IDFVSRCLVKNPEERATASEMLNHEF 237
              D +   L  NP +R +A E L H +
Sbjct: 258 TGRDLLQNLLKCNPVQRISAEEALQHPY 285

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score =  101 bits (253), Expect = 2e-25
 Identities = 58/271 (21%), Positives = 96/271 (35%), Gaps = 73/271 (26%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q     +V       K    ++V E+    ++ D + L    L    +   L   + G
Sbjct: 78  LKQLRHENLVNLLEVCKKKKRWYLVFEFV-DHTILDDLELFPNGLDYQVVQKYLFQIING 136

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + + H    IHRD                                 +K  NIL++  G  
Sbjct: 137 IGFCHSHNIIHRD---------------------------------IKPENILVSQSGVV 163

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG---YDCVADMWSLG-ITALEMAE 176
           KL DFG A  L       +  + T ++ APE++  +G   Y    D+W++G +   EM  
Sbjct: 164 KLCDFGFARTLAAPGEVYDDEVATRWYRAPELL--VGDVKYGKAVDVWAIGCLVT-EMFM 220

Query: 177 GKP--PYGD--IHPMRAIFMI---PT---------------------KPPPSFRE--PDV 206
           G+P  P GD  I  +  I M                           K         P  
Sbjct: 221 GEPLFP-GDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPK- 278

Query: 207 WTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
            +   ID   +CL  +P++R   +E+L+H+F
Sbjct: 279 LSEVVIDLAKKCLHIDPDKRPFCAELLHHDF 309

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score =  100 bits (251), Expect = 3e-25
 Identities = 62/278 (22%), Positives = 100/278 (35%), Gaps = 72/278 (25%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD---IMRLRKKTLSEDEIATILCDT 57
           +++   P +V           L +V E+       D   ++   K  L + +I   L   
Sbjct: 73  LKELHHPNIVSLIDVIHSERCLTLVFEFME----KDLKKVLDENKTGLQDSQIKIYLYQL 128

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           L+G+ + H  R +HRD                                 LK  N+L+N++
Sbjct: 129 LRGVAHCHQHRILHRD---------------------------------LKPQNLLINSD 155

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAE 176
           G  KLADFG+A      +      + T ++ AP+V+     Y    D+WS+G    EM  
Sbjct: 156 GALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMIT 215

Query: 177 GKPPY---GDIHPMRAIFMI-----------------------PTKPPPSFRE--PDVWT 208
           GKP +    D   +  IF I                              +    P    
Sbjct: 216 GKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGF-C 274

Query: 209 PEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPS 246
            E ID +S  L  +P +R +A + +NH + +  D DP 
Sbjct: 275 QEGIDLLSNMLCFDPNKRISARDAMNHPYFK--DLDPQ 310

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score =  100 bits (252), Expect = 3e-25
 Identities = 58/255 (22%), Positives = 98/255 (38%), Gaps = 72/255 (28%)

Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D ++VM +       D+ ++     SE++I  ++   LKGL+Y+H    +HRD       
Sbjct: 103 DFYLVMPFMQT----DLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRD------- 151

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK GN+ +N +   K+ DFG+A      M     
Sbjct: 152 --------------------------LKPGNLAVNEDCELKILDFGLARHADAEMTGY-- 183

Query: 141 VIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAEGKP--PYGD-IHPMRAIFMI--- 193
            + T ++ APEVI   + Y+   D+WS+G    EM  GK      D +  +  I  +   
Sbjct: 184 -VVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGV 242

Query: 194 ---------------------PTKPPPSFRE--PDVWTPEFIDFVSRCLVKNPEERATAS 230
                                P  P   F +  P   +P+  D + + L  + ++R TA+
Sbjct: 243 PGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRA-SPQAADLLEKMLELDVDKRLTAA 301

Query: 231 EMLNHEFIQR-HDTD 244
           + L H F +   D +
Sbjct: 302 QALTHPFFEPFRDPE 316

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score =  101 bits (254), Expect = 4e-25
 Identities = 57/270 (21%), Positives = 97/270 (35%), Gaps = 90/270 (33%)

Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D+++VME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 141 DVYLVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 189

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA------GQLTDT 134
                                     LK  NI++ ++   K+ DFG+A        +T  
Sbjct: 190 --------------------------LKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPY 223

Query: 135 MAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP--PYGD-IHPMRAIF 191
           +  R       ++ APEVI  +GY    D+WS+G    EM   K   P  D I     + 
Sbjct: 224 VVTR-------YYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVI 276

Query: 192 MI-----------------------PTKPPPSFRE--PDVW-----------TPEFIDFV 215
                                    P     +F +  PD               +  D +
Sbjct: 277 EQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLL 336

Query: 216 SRCLVKNPEERATASEMLNHEFIQR-HDTD 244
           S+ LV +P +R +  + L H +I   +D  
Sbjct: 337 SKMLVIDPAKRISVDDALQHPYINVWYDPA 366

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score =  100 bits (251), Expect = 5e-25
 Identities = 60/278 (21%), Positives = 102/278 (36%), Gaps = 90/278 (32%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD---IMRLRKKTLSEDEIATILCDT 57
           +Q+   P ++    ++   +++ +V ++      +D   I++     L+   I   +  T
Sbjct: 66  LQELSHPNIIGLLDAFGHKSNISLVFDFME----TDLEVIIKDNSLVLTPSHIKAYMLMT 121

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           L+GLEYLH    +HRD                                 LK  N+LL+  
Sbjct: 122 LQGLEYLHQHWILHRD---------------------------------LKPNNLLLDEN 148

Query: 118 GHAKLADFGVA-------GQLTDTMAKRNTVIGTPFWMAPEVIQEIG---YDCVADMWSL 167
           G  KLADFG+A          T      + V+ T ++ APE++   G   Y    DMW++
Sbjct: 149 GVLKLADFGLAKSFGSPNRAYT------HQVV-TRWYRAPELL--FGARMYGVGVDMWAV 199

Query: 168 G-ITALEMAEGKP--PYG--DIHPMRAIFMI---------------------PTKPPPSF 201
           G I A E+    P  P G  D+  +  IF                        + P    
Sbjct: 200 GCILA-ELLLRVPFLP-GDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPL 257

Query: 202 RE--PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
                     + +D +    + NP  R TA++ L  ++
Sbjct: 258 HHIFSAA-GDDLLDLIQGLFLFNPCARITATQALKMKY 294

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 99.2 bits (248), Expect = 8e-25
 Identities = 58/278 (20%), Positives = 96/278 (34%), Gaps = 87/278 (31%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q   P +V     + +   L +V EYC   +V   +   ++ + E  + +I   TL+ 
Sbjct: 56  LKQLKHPNLVNLLEVFRRKRRLHLVFEYC-DHTVLHELDRYQRGVPEHLVKSITWQTLQA 114

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + + H    IHRD                                 +K  NIL+      
Sbjct: 115 VNFCHKHNCIHRD---------------------------------VKPENILITKHSVI 141

Query: 121 KLADFGVA-------GQLTDTMAKRNTVIGTPFWM-APEVIQEIG---YDCVADMWSLG- 168
           KL DFG A           D +A R        W  +PE++  +G   Y    D+W++G 
Sbjct: 142 KLCDFGFARLLTGPSDYYDDEVATR--------WYRSPELL--VGDTQYGPPVDVWAIGC 191

Query: 169 ITALEMAEGKP--PYGD--IHPMRAIFMI---PTK-----------------PPPSFREP 204
           + A E+  G P  P G   +  +  I                          P P   EP
Sbjct: 192 VFA-ELLSGVPLWP-GKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEP 249

Query: 205 -----DVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
                   +   +  +  CL  +P ER T  ++L+H +
Sbjct: 250 LELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHHPY 287

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 99.8 bits (249), Expect = 9e-25
 Identities = 57/264 (21%), Positives = 96/264 (36%), Gaps = 78/264 (29%)

Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
           D++IVME   A    ++ ++ +  L  + ++ +L   L G+++LH    IHRD       
Sbjct: 104 DVYIVMELMDA----NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRD------- 152

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT 140
                                     LK  NI++ ++   K+ DFG+A     +      
Sbjct: 153 --------------------------LKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPY 186

Query: 141 VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP--PYGD-IHPMRAIFMI---- 193
           V+ T ++ APEVI  +GY    D+WS+G    EM +G    P  D I     +       
Sbjct: 187 VV-TRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTP 245

Query: 194 -------------------PTKPPPSFRE-------------PDVWTPEFIDFVSRCLVK 221
                              P     SF +               +   +  D +S+ LV 
Sbjct: 246 CPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVI 305

Query: 222 NPEERATASEMLNHEFIQR-HDTD 244
           +  +R +  E L H +I   +D  
Sbjct: 306 DASKRISVDEALQHPYINVWYDPS 329

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 98.8 bits (247), Expect = 1e-24
 Identities = 58/251 (23%), Positives = 93/251 (37%), Gaps = 45/251 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 130 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 156

Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 157 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 216

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
             PY  I       ++        R  +P + T +    + +C + + + R    E+   
Sbjct: 217 SKPYDGIPASEISSILEK----GERLPQPPICTIDVYMIMRKCWMIDADSRPKFREL--I 270

Query: 236 EFIQRHDTDPS 246
               +   DP 
Sbjct: 271 IEFSKMARDPQ 281

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 98.8 bits (247), Expect = 1e-24
 Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 75/272 (27%)

Query: 1   MQQCDSPYVVK-----YYGSYFKNTDLWIVMEYCGAGSVSDIMRL----RKKTLSEDEIA 51
           ++  + P VV+           + T L +V E+       D+        +  +  + I 
Sbjct: 68  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD----QDLTTYLDKVPEPGVPTETIK 123

Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
            ++   L+GL++LH  R +HRD                                 LK  N
Sbjct: 124 DMMFQLLRGLDFLHSHRVVHRD---------------------------------LKPQN 150

Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLG-IT 170
           IL+ + G  KLADFG+A   +  MA  + V+ T ++ APEV+ +  Y    D+WS+G I 
Sbjct: 151 ILVTSSGQIKLADFGLARIYSFQMALTSVVV-TLWYRAPEVLLQSSYATPVDLWSVGCIF 209

Query: 171 ALEMAEGKP--P-YGDIHPMRAIFMI--------------------PTKPPPSFRE--PD 205
           A EM   KP      D+  +  I  +                     +K      +   D
Sbjct: 210 A-EMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTD 268

Query: 206 VWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           +      D + +CL  NP +R +A   L+H +
Sbjct: 269 I-DELGKDLLLKCLTFNPAKRISAYSALSHPY 299

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 99.3 bits (248), Expect = 2e-24
 Identities = 52/251 (20%), Positives = 92/251 (36%), Gaps = 50/251 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           ++Q   P +V+  G   +   ++IVME    G     +R     L    +  ++ D   G
Sbjct: 166 LKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAG 225

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +EYL  +  IHRD+ A        R                         N L+  +   
Sbjct: 226 MEYLESKCCIHRDLAA--------R-------------------------NCLVTEKNVL 252

Query: 121 KLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K++DFG++ +  D +   +  +   P  W APE +    Y   +D+WS GI   E  + G
Sbjct: 253 KISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLG 312

Query: 178 KPPYGDIHPMRAIFMIPT----KPPPSFREPDVWTPEFI-DFVSRCLVKNPEERATASEM 232
             PY ++   +    +        P          P+ +   + +C    P +R + S +
Sbjct: 313 ASPYPNLSNQQTREFVEKGGRLPCPEL-------CPDAVFRLMEQCWAYEPGQRPSFSTI 365

Query: 233 LNH--EFIQRH 241
                   +RH
Sbjct: 366 YQELQSIRKRH 376

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 98.9 bits (247), Expect = 2e-24
 Identities = 66/267 (24%), Positives = 101/267 (37%), Gaps = 81/267 (30%)

Query: 21  DLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           +++I+ E       +D+ R +  + LS+D I   +  TL+ ++ LH    IHRD      
Sbjct: 88  EVYIIQELMQ----TDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRD------ 137

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+L+N+    K+ DFG+A  + ++ A  +
Sbjct: 138 ---------------------------LKPSNLLINSNCDLKVCDFGLARIIDESAADNS 170

Query: 140 TVIGTPFWM----------APEVI-QEIGYDCVADMWSLGITALEMAEGKP--------- 179
              G    M          APEV+     Y    D+WS G    E+   +P         
Sbjct: 171 EPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRH 230

Query: 180 -----------PYGD-----IHPMRAIFMI---PTKPPPSFRE--PDVWTPEFIDFVSRC 218
                      P+ D     I   RA   I   P  P     +  P V  P+ ID + R 
Sbjct: 231 QLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRV-NPKGIDLLQRM 289

Query: 219 LVKNPEERATASEMLNHEFIQR-HDTD 244
           LV +P +R TA E L H ++Q  HD +
Sbjct: 290 LVFDPAKRITAKEALEHPYLQTYHDPN 316

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 97.7 bits (244), Expect = 2e-24
 Identities = 55/256 (21%), Positives = 83/256 (32%), Gaps = 70/256 (27%)

Query: 7   PYVVKYYGSY----FKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLKGL 61
           P++V+    Y         L IVME    G +   I     +  +E E + I+    + +
Sbjct: 71  PHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAI 130

Query: 62  EYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA- 120
           +YLH     HRD                                 +K  N+L  ++    
Sbjct: 131 QYLHSINIAHRD---------------------------------VKPENLLYTSKRPNA 157

Query: 121 --KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
             KL DFG                      A E   E  YD   DMWSLG+    +  G 
Sbjct: 158 ILKLTDFG---------------------FAKETTGE-KYDKSCDMWSLGVIMYILLCGY 195

Query: 179 PPYGDIHPMR---AIFMIPTKPPPSFREPDVW---TPEFIDFVSRCLVKNPEERATASEM 232
           PP+   H +     +          F  P+ W   + E    +   L   P +R T +E 
Sbjct: 196 PPFYSNHGLAISPGMKTRIRMGQYEFPNPE-WSEVSEEVKMLIRNLLKTEPTQRMTITEF 254

Query: 233 LNHEFIQRHDTDPSQN 248
           +NH +I +    P   
Sbjct: 255 MNHPWIMQSTKVPQTP 270

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 98.9 bits (247), Expect = 2e-24
 Identities = 50/263 (19%), Positives = 82/263 (31%), Gaps = 82/263 (31%)

Query: 21  DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT 80
            L++V E      ++ ++  ++  +S   I   +   L GL  LH    +HRD       
Sbjct: 108 KLYLVTELMRT-DLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRD------- 159

Query: 81  LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA------GQLTDT 134
                                     L  GNILL       + DF +A         T  
Sbjct: 160 --------------------------LHPGNILLADNNDITICDFNLAREDTADANKTHY 193

Query: 135 MAKRNTVIGTPFWM-APEVI-QEIGYDCVADMWSLGITALEMAEGKP--PYGD-IHPMRA 189
           +  R        W  APE++ Q  G+  + DMWS G    EM   K         + +  
Sbjct: 194 VTHR--------WYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNK 245

Query: 190 IF-------------------------MIPTKPPPSFRE--PDVWTPEFIDFVSRCLVKN 222
           I                           +   P  ++    P    P  +D +++ L  N
Sbjct: 246 IVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTA-DPVALDLIAKMLEFN 304

Query: 223 PEERATASEMLNHEFIQR-HDTD 244
           P+ R +  + L H + +   D  
Sbjct: 305 PQRRISTEQALRHPYFESLFDPL 327

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 98.9 bits (247), Expect = 2e-24
 Identities = 63/261 (24%), Positives = 101/261 (38%), Gaps = 83/261 (31%)

Query: 21  DLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           D ++VM + G    +D+ + ++ + L ED I  ++   LKGL Y+H    IHRD      
Sbjct: 104 DFYLVMPFMG----TDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRD------ 153

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA----GQLTDTM 135
                                      LK GN+ +N +   K+ DFG+A     ++T  +
Sbjct: 154 ---------------------------LKPGNLAVNEDCELKILDFGLARQADSEMTGYV 186

Query: 136 AKRNTVIGTPFWM-APEVI-QEIGYDCVADMWSLGITALEMAEGKP--PYGD-IHPMRAI 190
             R        W  APEVI   + Y    D+WS+G    EM  GK      D +  ++ I
Sbjct: 187 VTR--------WYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEI 238

Query: 191 FMI------------------------PTKPPPSFRE--PDVWTPEFIDFVSRCLVKNPE 224
             +                        P      F     +  +P  ++ + + LV + E
Sbjct: 239 MKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNA-SPLAVNLLEKMLVLDAE 297

Query: 225 ERATASEMLNHEFIQR-HDTD 244
           +R TA E L H + +  HDT+
Sbjct: 298 QRVTAGEALAHPYFESLHDTE 318

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 98.2 bits (245), Expect = 4e-24
 Identities = 56/256 (21%), Positives = 101/256 (39%), Gaps = 73/256 (28%)

Query: 21  DLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           D+++V    GA    D+   ++ + L++D +  ++   L+GL+Y+H    IHRD      
Sbjct: 108 DVYLVTHLMGA----DLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRD------ 157

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRN 139
                                      LK  N+ +N +   K+ DFG+A    D M    
Sbjct: 158 ---------------------------LKPSNLAVNEDCELKILDFGLARHTADEMTGY- 189

Query: 140 TVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAEGKP--PYGD-IHPMRAIFMI-- 193
             + T ++ APE++   + Y+   D+WS+G    E+  G+   P  D I  ++ I  +  
Sbjct: 190 --VATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG 247

Query: 194 ----------------------PTKPPPSFRE--PDVWTPEFIDFVSRCLVKNPEERATA 229
                                    P  +F         P  +D + + LV + ++R TA
Sbjct: 248 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGA-NPLAVDLLEKMLVLDSDKRITA 306

Query: 230 SEMLNHEFIQR-HDTD 244
           ++ L H +  + HD D
Sbjct: 307 AQALAHAYFAQYHDPD 322

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 97.3 bits (243), Expect = 4e-24
 Identities = 58/279 (20%), Positives = 98/279 (35%), Gaps = 81/279 (29%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL--------RKKTLSEDEIAT 52
           M++     +V+ Y        L +V E+      +D+ +           + L  + +  
Sbjct: 57  MKELKHENIVRLYDVIHTENKLTLVFEFMD----NDLKKYMDSRTVGNTPRGLELNLVKY 112

Query: 53  ILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
                L+GL + H  + +HRD                                 LK  N+
Sbjct: 113 FQWQLLQGLAFCHENKILHRD---------------------------------LKPQNL 139

Query: 113 LLNTEGHAKLADFGVAGQLTDTMAKRNT--VIGTPFWMAPEVI-QEIGYDCVADMWSLGI 169
           L+N  G  KL DFG+A      +    +  V+ T ++ AP+V+     Y    D+WS G 
Sbjct: 140 LINKRGQLKLGDFGLARAFGIPV-NTFSSEVV-TLWYRAPDVLMGSRTYSTSIDIWSCGC 197

Query: 170 TALEMAEGKPPY---GDIHPMRAIFMI----------------------PTKPPPSFRE- 203
              EM  GKP +    D   ++ IF I                        +PP   R+ 
Sbjct: 198 ILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQV 257

Query: 204 -----PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
                 +      +DF+   L  NP+ R +A + L+H +
Sbjct: 258 LQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPW 296

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 96.9 bits (242), Expect = 8e-24
 Identities = 57/284 (20%), Positives = 97/284 (34%), Gaps = 86/284 (30%)

Query: 1   MQQCDSPYVV--------KYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDE 49
           +Q      VV        K          +++V ++C      D+  L        +  E
Sbjct: 70  LQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFC----EHDLAGLLSNVLVKFTLSE 125

Query: 50  IATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKA 109
           I  ++   L GL Y+H  + +HRD                                 +KA
Sbjct: 126 IKRVMQMLLNGLYYIHRNKILHRD---------------------------------MKA 152

Query: 110 GNILLNTEGHAKLADFGVA---GQLTDTMAKR--NTVIGTPFWMAPEVI-QEIGYDCVAD 163
            N+L+  +G  KLADFG+A       ++   R  N V+ T ++  PE++  E  Y    D
Sbjct: 153 ANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVV-TLWYRPPELLLGERDYGPPID 211

Query: 164 MWSLG-ITALEMAEGKPPY---GDIHPMRAIFMI-----------------------PTK 196
           +W  G I A EM    P      + H +  I  +                          
Sbjct: 212 LWGAGCIMA-EMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKG 270

Query: 197 PPPSFRE--PDVWTPEF-IDFVSRCLVKNPEERATASEMLNHEF 237
                ++         + +D + + LV +P +R  + + LNH+F
Sbjct: 271 QKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDF 314

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 97.1 bits (242), Expect = 9e-24
 Identities = 52/293 (17%), Positives = 91/293 (31%), Gaps = 94/293 (32%)

Query: 5   DSPYVVKYYGS-YFKNTDLW---IVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLK 59
            + +++K       K  +     +V E  G  ++  +++  + + +    +  I    L 
Sbjct: 84  GANHILKLLDHFNHKGPNGVHVVMVFEVLGE-NLLALIKKYEHRGIPLIYVKQISKQLLL 142

Query: 60  GLEYLHLRRK-IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           GL+Y+H R   IH D                                 +K  N+L+    
Sbjct: 143 GLDYMHRRCGIIHTD---------------------------------IKPENVLMEIVD 169

Query: 119 HA------KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITAL 172
                   K+AD G A    +        I T  + +PEV+    + C AD+WS      
Sbjct: 170 SPENLIQIKIADLGNACWYDEHY---TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIF 226

Query: 173 EMAEGKP---------PYGDIHPMRAIFMIPTKPPPSFRE-------------------- 203
           E+  G              D   +  I  +  + P                         
Sbjct: 227 ELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISK 286

Query: 204 ------PDVWT----------PEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
                  DV T           E  DF+S  L  +P +RA A  ++NH +++ 
Sbjct: 287 LKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKD 339

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 96.1 bits (240), Expect = 1e-23
 Identities = 53/270 (19%), Positives = 89/270 (32%), Gaps = 72/270 (26%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD---IMRLRKKTLSEDEIATILCDT 57
           ++      +V  +        L +V EY       D    +      ++   +   L   
Sbjct: 54  LKDLKHANIVTLHDIIHTEKSLTLVFEYLD----KDLKQYLDDCGNIINMHNVKLFLFQL 109

Query: 58  LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE 117
           L+GL Y H ++ +HRD                                 LK  N+L+N  
Sbjct: 110 LRGLAYCHRQKVLHRD---------------------------------LKPQNLLINER 136

Query: 118 GHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMA 175
           G  KLADFG+A   +       N V+ T ++  P+++     Y    DMW +G    EMA
Sbjct: 137 GELKLADFGLARAKSIPTKTYDNEVV-TLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMA 195

Query: 176 EGKPPY---GDIHPMRAIFMI-----------------------PTKPPPSFRE--PDVW 207
            G+P +        +  IF I                       P     +     P + 
Sbjct: 196 TGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRL- 254

Query: 208 TPEFIDFVSRCLVKNPEERATASEMLNHEF 237
             +  D +++ L      R +A + + H F
Sbjct: 255 DSDGADLLTKLLQFEGRNRISAEDAMKHPF 284

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 95.8 bits (239), Expect = 2e-23
 Identities = 55/288 (19%), Positives = 100/288 (34%), Gaps = 88/288 (30%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL--RKKTLSEDEIATILCDTL 58
           +++     +++       N  L ++ EY      +D+ +   +   +S   I + L   +
Sbjct: 87  LKELQHRNIIELKSVIHHNHRLHLIFEYAE----NDLKKYMDKNPDVSMRVIKSFLYQLI 142

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-- 116
            G+ + H RR +HRD                                 LK  N+LL+   
Sbjct: 143 NGVNFCHSRRCLHRD---------------------------------LKPQNLLLSVSD 169

Query: 117 ---EGHAKLADFGVA-------GQLTDTMAKRNTVIGTPFWMAPEVI-QEIGYDCVADMW 165
                  K+ DFG+A        Q T      + +I T ++  PE++     Y    D+W
Sbjct: 170 ASETPVLKIGDFGLARAFGIPIRQFT------HEII-TLWYRPPEILLGSRHYSTSVDIW 222

Query: 166 SLG-ITALEMAEGKPPY---GDIHPMRAIFMI----------------------PTKPPP 199
           S+  I A EM    P +    +I  +  IF +                      P     
Sbjct: 223 SIACIWA-EMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGK 281

Query: 200 SFRE--PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
           + +     +   E +D ++  L  +P +R +A   L H +   +D DP
Sbjct: 282 TLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFSHNDFDP 329

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 96.2 bits (240), Expect = 2e-23
 Identities = 62/267 (23%), Positives = 99/267 (37%), Gaps = 89/267 (33%)

Query: 21  DLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           D++IV +       +D+ + L+ + LS D I   L   L+GL+Y+H    +HRD      
Sbjct: 104 DVYIVQDLME----TDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRD------ 153

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA----------G 129
                                      LK  N+LLNT    K+ DFG+A          G
Sbjct: 154 ---------------------------LKPSNLLLNTTCDLKICDFGLARVADPDHDHTG 186

Query: 130 QLTDTMAKRNTVIGTPFWM-APEVI-QEIGYDCVADMWSLGITALEMAEGKP--PYGD-I 184
            LT+ +A R        W  APE++    GY    D+WS+G    EM   +P  P    +
Sbjct: 187 FLTEYVATR--------WYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYL 238

Query: 185 HPMRAIFMI------------------------PTKPPPSFRE--PDVWTPEFIDFVSRC 218
             +  I  I                        P K    +    P+    + +D + + 
Sbjct: 239 DQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNA-DSKALDLLDKM 297

Query: 219 LVKNPEERATASEMLNHEFIQR-HDTD 244
           L  NP +R    + L H ++++ +D  
Sbjct: 298 LTFNPHKRIEVEQALAHPYLEQYYDPS 324

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 94.7 bits (236), Expect = 4e-23
 Identities = 58/252 (23%), Positives = 94/252 (37%), Gaps = 45/252 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +  G    +T + ++ +    G + D +R  K  +    +        KG
Sbjct: 71  MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 129

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD                                 L A N+L+ T  H 
Sbjct: 130 MNYLEDRRLVHRD---------------------------------LAARNVLVKTPQHV 156

Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           K+ DFG+A  L     + +   G  P  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 157 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 216

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
             PY  I       ++        R  +P + T +    + +C + + + R    E+   
Sbjct: 217 SKPYDGIPASEISSILEK----GERLPQPPICTIDVYMIMVKCWMIDADSRPKFREL--I 270

Query: 236 EFIQRHDTDPSQ 247
               +   DP +
Sbjct: 271 IEFSKMARDPQR 282

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 94.3 bits (235), Expect = 5e-23
 Identities = 58/287 (20%), Positives = 98/287 (34%), Gaps = 89/287 (31%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           +       +    GS  +   ++IV EY      +D+   L +  L E+     +   L+
Sbjct: 76  ILGPSGSQLTDDVGSLTELNSVYIVQEYME----TDLANVLEQGPLLEEHARLFMYQLLR 131

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG- 118
           GL+Y+H    +HRD                                 LK  N+ +NTE  
Sbjct: 132 GLKYIHSANVLHRD---------------------------------LKPANLFINTEDL 158

Query: 119 HAKLADFGVA----------GQLTDTMAKRNTVIGTPFWM-APEVI-QEIGYDCVADMWS 166
             K+ DFG+A          G L++ +  +        W  +P ++     Y    DMW+
Sbjct: 159 VLKIGDFGLARIMDPHYSHKGHLSEGLVTK--------WYRSPRLLLSPNNYTKAIDMWA 210

Query: 167 LGITALEMAEGKP--PYGD-IHPMRAIFMI-----------------------PTKPPPS 200
            G    EM  GK        +  M+ I                           T+P   
Sbjct: 211 AGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKP 270

Query: 201 FRE--PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR-HDTD 244
             +  P + + E +DF+ + L  +P +R TA E L+H ++       
Sbjct: 271 LTQLLPGI-SREAVDFLEQILTFSPMDRLTAEEALSHPYMSIYSFPM 316

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 95.5 bits (238), Expect = 6e-23
 Identities = 63/265 (23%), Positives = 89/265 (33%), Gaps = 74/265 (27%)

Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCDTLKGLEYL 64
           Y     G       L +V++Y    +V  + R     K+TL    +   +    + L Y+
Sbjct: 114 YFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYI 172

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA-KLA 123
           H     HRDIK                                   N+LL+ +    KL 
Sbjct: 173 HSFGICHRDIKPQ---------------------------------NLLLDPDTAVLKLC 199

Query: 124 DFGVAGQLTDTMAKRNTV-IGTPFWMAPEVI-QEIGYDCVADMWSLG-ITALEMAEGKP- 179
           DFG A QL     + N   I + ++ APE+I     Y    D+WS G + A E+  G+P 
Sbjct: 200 DFGSAKQLVRG--EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLA-ELLLGQPI 256

Query: 180 -PYGD-----------------------IHPMRAIFMIPTKPPPSFRE---PDVWTPEFI 212
            P GD                       ++P    F  P      + +   P    PE I
Sbjct: 257 FP-GDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRT-PPEAI 314

Query: 213 DFVSRCLVKNPEERATASEMLNHEF 237
              SR L   P  R T  E   H F
Sbjct: 315 ALCSRLLEYTPTARLTPLEACAHSF 339

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 94.4 bits (235), Expect = 1e-22
 Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 70/251 (27%)

Query: 20  TDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA 76
             L ++MEY    ++  +++      +++  + I+  +    + + ++H     HRDIK 
Sbjct: 111 KYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKP 169

Query: 77  GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA-KLADFGVAGQLTDTM 135
                                             N+L+N++ +  KL DFG A +L  + 
Sbjct: 170 Q---------------------------------NLLVNSKDNTLKLCDFGSAKKLIPSE 196

Query: 136 AKRNTV-IGTPFWMAPEVI-QEIGYDCVADMWSLG-ITALEMAEGKP------------- 179
              +   I + F+ APE++     Y    D+WS+G +   E+  GKP             
Sbjct: 197 P--SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFG-ELILGKPLFSGETSIDQLVR 253

Query: 180 -------P----YGDIHPMRAIFMIPTKPPPSFRE--PDVWTPEFIDFVSRCLVKNPEER 226
                  P       ++P       PT     +R+  P+      ID + + L   P+ R
Sbjct: 254 IIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLR 313

Query: 227 ATASEMLNHEF 237
               E + H F
Sbjct: 314 INPYEAMAHPF 324

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 92.4 bits (230), Expect = 2e-22
 Identities = 55/253 (21%), Positives = 87/253 (34%), Gaps = 64/253 (25%)

Query: 1   MQQCDSPYVVKYYG--SYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL 58
           ++      +VKY G        +L ++MEY   GS+ D ++  K+ +   ++        
Sbjct: 65  LKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQIC 124

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           KG+EYL  +R IHRD                                 L   NIL+  E 
Sbjct: 125 KGMEYLGTKRYIHRD---------------------------------LATRNILVENEN 151

Query: 119 HAKLADFGVAGQLTDT----MAKRNTVIGTP-FWMAPEVIQEIGYDCVADMWSLGITALE 173
             K+ DFG+   L         K       P FW APE + E  +   +D+WS G+   E
Sbjct: 152 RVKIGDFGLTKVLPQDKEFFKVKEPGES--PIFWYAPESLTESKFSVASDVWSFGVVLYE 209

Query: 174 M----------------AEGKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFV 215
           +                  G    G +     I ++      + R   PD    E    +
Sbjct: 210 LFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKN----NGRLPRPDGCPDEIYMIM 265

Query: 216 SRCLVKNPEERAT 228
           + C   N  +R +
Sbjct: 266 TECWNNNVNQRPS 278

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 92.4 bits (230), Expect = 3e-22
 Identities = 55/249 (22%), Positives = 90/249 (36%), Gaps = 57/249 (22%)

Query: 1   MQQCDSPYVVKYYG--SYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL 58
           ++   S ++VKY G         L +VMEY  +G + D ++  +  L    +        
Sbjct: 78  LKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQIC 137

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           KG+EYL  RR +HRD                                 L A NIL+ +E 
Sbjct: 138 KGMEYLGSRRCVHRD---------------------------------LAARNILVESEA 164

Query: 119 HAKLADFGVAGQLTDT----MAKRNTVIGTP-FWMAPEVIQEIGYDCVADMWSLGITALE 173
           H K+ADFG+A  L       + +       P FW APE + +  +   +D+WS G+   E
Sbjct: 165 HVKIADFGLAKLLPLDKDYYVVREPGQS--PIFWYAPESLSDNIFSRQSDVWSFGVVLYE 222

Query: 174 MA-EGKPPYGDIHPMRAIFMIPTKPPPSFRE-------------PDVWTPEFIDFVSRCL 219
           +                + M   +  P+                P     E  + +  C 
Sbjct: 223 LFTYCDKSCSPSAEFLRM-MGCERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCW 281

Query: 220 VKNPEERAT 228
             +P++R +
Sbjct: 282 APSPQDRPS 290

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 92.1 bits (229), Expect = 4e-22
 Identities = 55/253 (21%), Positives = 87/253 (34%), Gaps = 64/253 (25%)

Query: 1   MQQCDSPYVVKYYG--SYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL 58
           ++      +VKY G        +L ++MEY   GS+ D ++  K+ +   ++        
Sbjct: 96  LKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQIC 155

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           KG+EYL  +R IHRD                                 L   NIL+  E 
Sbjct: 156 KGMEYLGTKRYIHRD---------------------------------LATRNILVENEN 182

Query: 119 HAKLADFGVAGQLTDT----MAKRNTVIGTP-FWMAPEVIQEIGYDCVADMWSLGITALE 173
             K+ DFG+   L         K       P FW APE + E  +   +D+WS G+   E
Sbjct: 183 RVKIGDFGLTKVLPQDKEYYKVKEPGES--PIFWYAPESLTESKFSVASDVWSFGVVLYE 240

Query: 174 M----------------AEGKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFV 215
           +                  G    G +     I ++      + R   PD    E    +
Sbjct: 241 LFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKN----NGRLPRPDGCPDEIYMIM 296

Query: 216 SRCLVKNPEERAT 228
           + C   N  +R +
Sbjct: 297 TECWNNNVNQRPS 309

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 48/252 (19%), Positives = 88/252 (34%), Gaps = 63/252 (25%)

Query: 1   MQQCDSPYVVKYYG--SYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL 58
           ++      +VKY G  +      + ++ME+  +GS+ + +   K  ++  +         
Sbjct: 77  LRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQIC 136

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           KG++YL  R+ +HRD                                 L A N+L+ +E 
Sbjct: 137 KGMDYLGSRQYVHRD---------------------------------LAARNVLVESEH 163

Query: 119 HAKLADFGVAGQLTDT----MAKRNTVIGTP-FWMAPEVIQEIGYDCVADMWSLGITALE 173
             K+ DFG+   +         K +     P FW APE + +  +   +D+WS G+T  E
Sbjct: 164 QVKIGDFGLTKAIETDKEYYTVKDDRDS--PVFWYAPECLMQSKFYIASDVWSFGVTLHE 221

Query: 174 M---------------AEGKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVS 216
           +                   P +G +   R +  +        R   P     E    + 
Sbjct: 222 LLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKE----GKRLPCPPNCPDEVYQLMR 277

Query: 217 RCLVKNPEERAT 228
           +C    P  R +
Sbjct: 278 KCWEFQPSNRTS 289

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 57/251 (22%), Positives = 91/251 (36%), Gaps = 45/251 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +   D  ++V+  G    ++ L +V +Y   GS+ D +R  +  L    +        KG
Sbjct: 69  IGSLDHAHIVRLLGLCPGSS-LQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKG 127

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     +HR+                                 L A N+LL +    
Sbjct: 128 MYYLEEHGMVHRN---------------------------------LAARNVLLKSPSQV 154

Query: 121 KLADFGVAGQLTDTMAKRNTVIG-TPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEG 177
           ++ADFGVA  L     +       TP  WMA E I    Y   +D+WS G+T  E M  G
Sbjct: 155 QVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFG 214

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
             PY  +       ++        R  +P + T +    + +C + +   R T  E+   
Sbjct: 215 AEPYAGLRLAEVPDLLEK----GERLAQPQICTIDVYMVMVKCWMIDENIRPTFKEL--A 268

Query: 236 EFIQRHDTDPS 246
               R   DP 
Sbjct: 269 NEFTRMARDPP 279

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 91.8 bits (228), Expect = 2e-21
 Identities = 55/250 (22%), Positives = 95/250 (38%), Gaps = 44/250 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WI+ME C  G +   +++RK +L    +          
Sbjct: 445 MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTA 503

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRD                                 + A N+L+++    
Sbjct: 504 LAYLESKRFVHRD---------------------------------IAARNVLVSSNDCV 530

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EGK 178
           KL DFG++  + D+   + +    P  WMAPE I    +   +D+W  G+   E+   G 
Sbjct: 531 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 590

Query: 179 PPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE 236
            P+  +     I  I        R   P    P     +++C   +P  R   +E+    
Sbjct: 591 KPFQGVKNNDVIGRIENG----ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL--KA 644

Query: 237 FIQRHDTDPS 246
            +     +  
Sbjct: 645 QLSTILEEEK 654

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 90.5 bits (225), Expect = 3e-21
 Identities = 67/267 (25%), Positives = 93/267 (34%), Gaps = 78/267 (29%)

Query: 8   YVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCDTLKGLEYL 64
                 G       L +V+EY    +V    R     K+T+    I   +   L+ L Y+
Sbjct: 99  AFFYSNGDKKDEVFLNLVLEYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYI 157

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLA 123
           H     HRDIK                                   N+LL+   G  KL 
Sbjct: 158 HSIGICHRDIKPQ---------------------------------NLLLDPPSGVLKLI 184

Query: 124 DFGVAGQLTDTMAKRNTV-IGTPFWMAPEVIQEIG---YDCVADMWSLG-ITALEMAEGK 178
           DFG A  L     + N   I + ++ APE+I   G   Y    D+WS G + A E+ +G+
Sbjct: 185 DFGSAKILIAG--EPNVSYICSRYYRAPELI--FGATNYTTNIDIWSTGCVMA-ELMQGQ 239

Query: 179 P--PYGD-----------------------IHPMRAIFMIPTKPPPSFRE---PDVWTPE 210
           P  P G+                       ++P       P   P  F +   P    P+
Sbjct: 240 PLFP-GESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRT-PPD 297

Query: 211 FIDFVSRCLVKNPEERATASEMLNHEF 237
            ID +SR L   P  R TA E L H F
Sbjct: 298 AIDLISRLLEYTPSARLTAIEALCHPF 324

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 89.7 bits (223), Expect = 3e-21
 Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 37/189 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q     +++  G   K   + I+ EY   G++   +R +    S  ++  +L     G
Sbjct: 100 MGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAG 159

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 160 MKYLANMNYVHRD---------------------------------LAARNILVNSNLVC 186

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W APE I    +   +D+WS GI   E M  
Sbjct: 187 KVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTY 246

Query: 177 GKPPYGDIH 185
           G+ PY ++ 
Sbjct: 247 GERPYWELS 255

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 88.5 bits (220), Expect = 1e-20
 Identities = 59/259 (22%), Positives = 86/259 (33%), Gaps = 75/259 (28%)

Query: 17  FKNTDLWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCDTLKGLEYLHLRRK--IH 71
            ++  L +VMEY    ++    R    R+       I   L   ++ +  LHL      H
Sbjct: 96  RRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCH 154

Query: 72  RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLADFGVAGQ 130
           RDIK                                   N+L+N   G  KL DFG A +
Sbjct: 155 RDIKPH---------------------------------NVLVNEADGTLKLCDFGSAKK 181

Query: 131 LTDTMAKRNTV-IGTPFWMAPEVI-QEIGYDCVADMWSLG-ITALEMAEGKP-------- 179
           L+ +    N   I + ++ APE+I     Y    D+WS+G I A EM  G+P        
Sbjct: 182 LSPSEP--NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFA-EMMLGEPIFRGDNSA 238

Query: 180 ------------P----YGDIHPMRAIFMIPTKPPPSFRE--PDVWT---PEFIDFVSRC 218
                       P       ++P      +       +     D       E  D +S  
Sbjct: 239 GQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSAL 298

Query: 219 LVKNPEERATASEMLNHEF 237
           L   PEER    E L H +
Sbjct: 299 LQYLPEERMKPYEALCHPY 317

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 88.8 bits (220), Expect = 1e-20
 Identities = 55/278 (19%), Positives = 85/278 (30%), Gaps = 67/278 (24%)

Query: 24  IVMEYCGAGSVSDIM-RLRKKTLSEDEIATILCDTLKGLEYLHLRRK-IHRDIKAG---- 77
           +V E  G   +   + +   + L    +  I+   L+GL+YLH + + IH DIK      
Sbjct: 122 MVFEVLGH-HLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILL 180

Query: 78  ------------SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADF 125
                         T              V T       F +         +   K+AD 
Sbjct: 181 SVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADL 240

Query: 126 GVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPY---- 181
           G A  +          I T  + + EV+   GY+  AD+WS    A E+A G   +    
Sbjct: 241 GNACWVHK---HFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHS 297

Query: 182 -GDIHPMRAIF--MIPT--KPPPSF------------------REPDVWTP--------- 209
             +          +I    K P                         +            
Sbjct: 298 GEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEK 357

Query: 210 ---------EFIDFVSRCLVKNPEERATASEMLNHEFI 238
                     F DF+   L   PE+RATA+E L H ++
Sbjct: 358 YEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWL 395

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 37/188 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   +     IV EY   GS+   +R      +  ++  +L     G
Sbjct: 104 MGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAG 163

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     +HRD                                 L A N+L+++    
Sbjct: 164 MRYLSDLGYVHRD---------------------------------LAARNVLVDSNLVC 190

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L D      T  G      W APE I    +   +D+WS G+   E +A 
Sbjct: 191 KVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAY 250

Query: 177 GKPPYGDI 184
           G+ PY ++
Sbjct: 251 GERPYWNM 258

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 87.0 bits (216), Expect = 2e-20
 Identities = 50/249 (20%), Positives = 85/249 (34%), Gaps = 59/249 (23%)

Query: 1   MQQCDSPYVVKYYG--SYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL 58
           ++     +++KY G         L +VMEY   GS+ D   L + ++   ++        
Sbjct: 87  LRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRD--YLPRHSIGLAQLLLFAQQIC 144

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           +G+ YLH +  IHRD                                 L A N+LL+ + 
Sbjct: 145 EGMAYLHAQHYIHRD---------------------------------LAARNVLLDNDR 171

Query: 119 HAKLADFGVAGQLTDT----MAKRNTVIGTP-FWMAPEVIQEIGYDCVADMWSLGITALE 173
             K+ DFG+A  + +       + +     P FW APE ++E  +   +D+WS G+T  E
Sbjct: 172 LVKIGDFGLAKAVPEGHEYYRVREDGDS--PVFWYAPECLKEYKFYYASDVWSFGVTLYE 229

Query: 174 MAE-GKPPYGDIHPMRAIFMIPTKPPPSFRE-------------PDVWTPEFIDFVSRCL 219
           +                +  I  +   +                PD    E    +  C 
Sbjct: 230 LLTHCDSSQSPPTKFLELIGIA-QGQMTVLRLTELLERGERLPRPDKCPAEVYHLMKNCW 288

Query: 220 VKNPEERAT 228
                 R T
Sbjct: 289 ETEASFRPT 297

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 86.1 bits (214), Expect = 4e-20
 Identities = 49/234 (20%), Positives = 82/234 (35%), Gaps = 43/234 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D   +++ YG       + +V E    GS+ D +R  +       ++       +G
Sbjct: 75  MHSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEG 133

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  +R IHRD                                 L A N+LL T    
Sbjct: 134 MGYLESKRFIHRD---------------------------------LAARNLLLATRDLV 160

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEMA-E 176
           K+ DFG+   L                  W APE ++   +   +D W  G+T  EM   
Sbjct: 161 KIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTY 220

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           G+ P+  ++  + +  I        R   P+    +  + + +C    PE+R T
Sbjct: 221 GQEPWIGLNGSQILHKIDK---EGERLPRPEDCPQDIYNVMVQCWAHKPEDRPT 271

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 87.9 bits (218), Expect = 4e-20
 Identities = 46/233 (19%), Positives = 88/233 (37%), Gaps = 42/233 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ +S   +  +      
Sbjct: 270 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 329

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHR+                                 L A N L+     
Sbjct: 330 AMEYLEKKNFIHRN---------------------------------LAARNCLVGENHL 356

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG++  +T      +     P  W APE +    +   +D+W+ G+   E+A  G
Sbjct: 357 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 416

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
             PY  I   +   ++       +R   P+    +  + +  C   NP +R +
Sbjct: 417 MSPYPGIDLSQVYELLEK----DYRMERPEGCPEKVYELMRACWQWNPSDRPS 465

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 86.3 bits (214), Expect = 7e-20
 Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 37/188 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P +++  G   K+  + IV EY   GS+   +R      +  ++  +L     G
Sbjct: 100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASG 159

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 160 MKYLSDMGYVHRD---------------------------------LAARNILINSNLVC 186

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG+   L D      T  G      W +PE I    +   +D+WS GI   E M+ 
Sbjct: 187 KVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSY 246

Query: 177 GKPPYGDI 184
           G+ PY ++
Sbjct: 247 GERPYWEM 254

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 86.9 bits (215), Expect = 9e-20
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 38/188 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D+PY+V+  G       L +VME  G G +   +  +++ +    +A +L     G
Sbjct: 390 MHQLDNPYIVRLIGVCQAEA-LMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMG 448

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL  +  +HR+                                 L A N+LL    +A
Sbjct: 449 MKYLEEKNFVHRN---------------------------------LAARNVLLVNRHYA 475

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L    +         +   W APE I    +   +D+WS G+T  E ++ 
Sbjct: 476 KISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSY 535

Query: 177 GKPPYGDI 184
           G+ PY  +
Sbjct: 536 GQKPYKKM 543

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 84.4 bits (209), Expect = 1e-19
 Identities = 21/236 (8%), Positives = 51/236 (21%), Gaps = 71/236 (30%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
           D P V +            +V E+   GS+ ++        S       +       +  
Sbjct: 89  DKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAA 145

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H                                              + ++ +G   LA 
Sbjct: 146 HRAGVALSIDHPS---------------------------------RVRVSIDGDVVLAY 172

Query: 125 FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDI 184
                                    P+           D+  +G +   +   + P  + 
Sbjct: 173 PATMPDAN-----------------PQ----------DDIRGIGASLYALLVNRWPLPEA 205

Query: 185 HPMRAIFMIPTK-----PPPSFREPDVWTPEFIDFVSRCLVKNPEER--ATASEML 233
                +             P+  + D+   +     +R +  +   R  +T   ++
Sbjct: 206 GVRSGLAPAERDTAGQPIEPADIDRDI-PFQISAVAARSVQGDGGIRSASTLLNLM 260

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 84.7 bits (210), Expect = 2e-19
 Identities = 59/280 (21%), Positives = 103/280 (36%), Gaps = 58/280 (20%)

Query: 5   DSPYVVKYYGS-YFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLE 62
           ++  +VKY+G   + +  + ++ E  G  S+ +I+          ++I     + LK L 
Sbjct: 94  NNNNIVKYHGKFMYYD-HMCLIFEPLGP-SLYEIITRNNYNGFHIEDIKLYCIEILKALN 151

Query: 63  YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKL 122
           YL      H D+K  +  L     +   I    +T+     ++R K+  I        KL
Sbjct: 152 YLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGI--------KL 203

Query: 123 ADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA------- 175
            DFG A   +D      ++I T  + APEVI  +G+D  +DMWS G    E+        
Sbjct: 204 IDFGCATFKSDYH---GSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFR 260

Query: 176 --------------EGKPP--------------YGDIHPMRAIFMIPTKPPPSFREPDVW 207
                             P              Y +   ++  +        S +     
Sbjct: 261 THEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKC 320

Query: 208 TP--------EFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
            P         F DF+   L  +P  R + +E+L H+F++
Sbjct: 321 LPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFLE 360

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 83.4 bits (207), Expect = 3e-19
 Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 39/188 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +   P +V+ YG   +   + +V E+   G +SD +R ++   + + +  +  D  +G
Sbjct: 57  MMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 116

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     IHRD                                 L A N L+      
Sbjct: 117 MAYLEEACVIHRD---------------------------------LAARNCLVGENQVI 143

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG+   + D     +T  GT F   W +PEV     Y   +D+WS G+   E  +E
Sbjct: 144 KVSDFGMTRFVLDDQYTSST--GTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSE 201

Query: 177 GKPPYGDI 184
           GK PY + 
Sbjct: 202 GKIPYENR 209

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 83.4 bits (207), Expect = 3e-19
 Identities = 49/188 (26%), Positives = 76/188 (40%), Gaps = 39/188 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +   P +VK+YG   K   ++IV EY   G + + +R   K L   ++  +  D  +G
Sbjct: 57  MMKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEG 116

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + +L   + IHRD                                 L A N L++ +   
Sbjct: 117 MAFLESHQFIHRD---------------------------------LAARNCLVDRDLCV 143

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG+   + D     +   GT F   W APEV     Y   +D+W+ GI   E  + 
Sbjct: 144 KVSDFGMTRYVLDDQYVSSV--GTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSL 201

Query: 177 GKPPYGDI 184
           GK PY   
Sbjct: 202 GKMPYDLY 209

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 83.5 bits (207), Expect = 3e-19
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 38/188 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D+PY+V+  G       L +VME  G G +   +  +++ +    +A +L     G
Sbjct: 64  MHQLDNPYIVRLIGVCQAEA-LMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMG 122

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL  +  +HRD                                 L A N+LL    +A
Sbjct: 123 MKYLEEKNFVHRD---------------------------------LAARNVLLVNRHYA 149

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L    +         +   W APE I    +   +D+WS G+T  E ++ 
Sbjct: 150 KISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSY 209

Query: 177 GKPPYGDI 184
           G+ PY  +
Sbjct: 210 GQKPYKKM 217

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 83.7 bits (207), Expect = 9e-19
 Identities = 55/253 (21%), Positives = 92/253 (36%), Gaps = 45/253 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLK 59
           M++     +V+ Y    +   ++IV EY   GS+ D ++    K L   ++  +      
Sbjct: 233 MKKLRHEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS 291

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ Y+     +HRD                                 L+A NIL+     
Sbjct: 292 GMAYVERMNYVHRD---------------------------------LRAANILVGENLV 318

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE      +   +D+WS GI   E+  +G
Sbjct: 319 CKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKG 378

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           + PY  +     +  +       +R   P        D + +C  K PEER T   +   
Sbjct: 379 RVPYPGMVNREVLDQVER----GYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYL--Q 432

Query: 236 EFIQRHDTDPSQN 248
            F++ + T     
Sbjct: 433 AFLEDYFTSTEPQ 445

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 81.9 bits (203), Expect = 1e-18
 Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 39/188 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M       +V+ YG   K   ++I+ EY   G + + +R  +      ++  +  D  + 
Sbjct: 73  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEA 132

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +EYL  ++ +HRD                                 L A N L+N +G  
Sbjct: 133 MEYLESKQFLHRD---------------------------------LAARNCLVNDQGVV 159

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  + D     +   G+ F   W  PEV+    +   +D+W+ G+   E  + 
Sbjct: 160 KVSDFGLSRYVLDDEYTSSV--GSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSL 217

Query: 177 GKPPYGDI 184
           GK PY   
Sbjct: 218 GKMPYERF 225

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 83.4 bits (206), Expect = 1e-18
 Identities = 55/253 (21%), Positives = 92/253 (36%), Gaps = 45/253 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLK 59
           M++     +V+ Y    +   ++IV EY   GS+ D ++    K L   ++  +      
Sbjct: 316 MKKLRHEKLVQLYAVVSEEP-IYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS 374

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ Y+     +HRD                                 L+A NIL+     
Sbjct: 375 GMAYVERMNYVHRD---------------------------------LRAANILVGENLV 401

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE      +   +D+WS GI   E+  +G
Sbjct: 402 CKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKG 461

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           + PY  +     +  +       +R   P        D + +C  K PEER T   +   
Sbjct: 462 RVPYPGMVNREVLDQVER----GYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYL--Q 515

Query: 236 EFIQRHDTDPSQN 248
            F++ + T     
Sbjct: 516 AFLEDYFTSTEPQ 528

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 83.3 bits (206), Expect = 1e-18
 Identities = 65/341 (19%), Positives = 107/341 (31%), Gaps = 136/341 (39%)

Query: 1   MQQCDSPYVVKYY-----GSYFKNTDLWIVMEYCGAGSVSDIMRLRKK--TLSEDEIATI 53
           + + +  +VVK           K  +L++V+E       SD  +L +    L+E  I T+
Sbjct: 106 LNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIAD----SDFKKLFRTPVYLTELHIKTL 161

Query: 54  LCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
           L + L G++Y+H    +HRD                                 LK  N L
Sbjct: 162 LYNLLVGVKYVHSAGILHRD---------------------------------LKPANCL 188

Query: 114 LNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWM------------------------- 148
           +N +   K+ DFG+A  +       + +  +P                            
Sbjct: 189 VNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRW 248

Query: 149 --APEVI-QEIGYDCVADMWSLG-ITALEM-----------AEGKP-------------- 179
             APE+I  +  Y    D+WS+G I A E+           A+  P              
Sbjct: 249 YRAPELILLQENYTEAIDVWSIGCIFA-ELLNMIKENVAYHADRGPLFPGSSCFPLSPDQ 307

Query: 180 ---------PYGDIHPMRAIF------------------------MIPTKPPPSFRE--P 204
                      G+   +  IF                        + P +      E  P
Sbjct: 308 KAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFP 367

Query: 205 DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR-HDTD 244
              + + I  + R LV NP +R T +E L H F +     +
Sbjct: 368 AS-SADAIHLLKRMLVFNPNKRITINECLAHPFFKEVRIAE 407

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 82.9 bits (205), Expect = 2e-18
 Identities = 62/304 (20%), Positives = 98/304 (32%), Gaps = 98/304 (32%)

Query: 5   DSPYVVKYYGS-YFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLE 62
           ++  V+    +  F+N  + +  E     ++ ++++  K +  S   +       L+ L+
Sbjct: 157 NTMNVIHMLENFTFRN-HICMTFELLSM-NLYELIKKNKFQGFSLPLVRKFAHSILQCLD 214

Query: 63  YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA-- 120
            LH  R IH D                                 LK  NILL  +G +  
Sbjct: 215 ALHKNRIIHCD---------------------------------LKPENILLKQQGRSGI 241

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALE------- 173
           K+ DFG +      +    T I + F+ APEVI    Y    DMWSLG    E       
Sbjct: 242 KVIDFGSSCYEHQRV---YTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPL 298

Query: 174 ------------MAE--GKPP-----------------------YGDIHPMRAIFMIPTK 196
                       M E  G P                                ++ +   +
Sbjct: 299 LPGEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGR 358

Query: 197 P-------PPSFRE-----PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD 244
                   PP  RE          P F+DF+ +CL  +P  R T  + L H +++R    
Sbjct: 359 SRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRRLPK 418

Query: 245 PSQN 248
           P   
Sbjct: 419 PPTG 422

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 81.1 bits (201), Expect = 2e-18
 Identities = 55/251 (21%), Positives = 95/251 (37%), Gaps = 44/251 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G   +N  +WI+ME C  G +   +++RK +L    +          
Sbjct: 70  MRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTA 128

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRD                                 + A N+L+++    
Sbjct: 129 LAYLESKRFVHRD---------------------------------IAARNVLVSSNDCV 155

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALE-MAEGK 178
           KL DFG++  + D+   + +    P  WMAPE I    +   +D+W  G+   E +  G 
Sbjct: 156 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 215

Query: 179 PPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE 236
            P+  +     I  I        R   P    P     +++C   +P  R   +E+    
Sbjct: 216 KPFQGVKNNDVIGRIEN----GERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTEL--KA 269

Query: 237 FIQRHDTDPSQ 247
            +     +   
Sbjct: 270 QLSTILEEEKA 280

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 58/293 (19%), Positives = 93/293 (31%), Gaps = 107/293 (36%)

Query: 21  DLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG 79
           D+++V +Y      +D+   +R   L       ++   +K ++YLH    +HRD      
Sbjct: 85  DVYLVFDYME----TDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGGLLHRD------ 134

Query: 80  TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA----------- 128
                                      +K  NILLN E H K+ADFG++           
Sbjct: 135 ---------------------------MKPSNILLNAECHVKVADFGLSRSFVNIRRVTN 167

Query: 129 -GQLTDTMAKRNTVIGTPFWM---------APEVI-QEIGYDCVADMWSLG-ITALEMAE 176
              L+      N     P            APE++     Y    DMWSLG I   E+  
Sbjct: 168 NIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILG-EILC 226

Query: 177 GKP--PYGD-IHPMRAIFMI------------------------PTKPPPSFREPDVW-- 207
           GKP  P    ++ +  I  +                          K             
Sbjct: 227 GKPIFPGSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFT 286

Query: 208 ---------------TPEFIDFVSRCLVKNPEERATASEMLNHEFIQR-HDTD 244
                            E +D + + L  NP +R +A++ L H F+   H+ +
Sbjct: 287 KWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALKHPFVSIFHNPN 339

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 82.1 bits (203), Expect = 3e-18
 Identities = 58/303 (19%), Positives = 87/303 (28%), Gaps = 105/303 (34%)

Query: 5   DSPYVVKYYGS-YFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLE 62
              Y+V       F+N  L +V E     ++ D++R      +S +            L 
Sbjct: 114 MKYYIVHLKRHFMFRN-HLCLVFEMLSY-NLYDLLRNTNFRGVSLNLTRKFAQQMCTALL 171

Query: 63  YLHLRRK--IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +L       IH D                                 LK  NILL     +
Sbjct: 172 FLATPELSIIHCD---------------------------------LKPENILLCNPKRS 198

Query: 121 --KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA--- 175
             K+ DFG + QL   +      I + F+ +PEV+  + YD   DMWSLG   +EM    
Sbjct: 199 AIKIVDFGSSCQLGQRI---YQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGE 255

Query: 176 ------------------EGKPP-----------------------------------YG 182
                              G PP                                     
Sbjct: 256 PLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPP 315

Query: 183 DIHPMRAIFMIPTKPPPSFREPDVWT-----PEFIDFVSRCLVKNPEERATASEMLNHEF 237
               +  I  + T  P   R  +         +F D + R L  +P+ R      L H F
Sbjct: 316 GTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSF 375

Query: 238 IQR 240
            ++
Sbjct: 376 FKK 378

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 81.5 bits (202), Expect = 3e-18
 Identities = 45/234 (19%), Positives = 83/234 (35%), Gaps = 75/234 (32%)

Query: 43  KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYK 102
           +TL++ +I   + + LK L+Y H    +HRD                             
Sbjct: 125 QTLTDYDIRFYMYEILKALDYCHSMGIMHRD----------------------------- 155

Query: 103 TLFRLKAGNILLNTEGHA-KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI---QEIGY 158
               +K  N++++ E    +L D+G+A +      + N  + + ++  PE++   Q   Y
Sbjct: 156 ----VKPHNVMIDHEHRKLRLIDWGLA-EFYHPGQEYNVRVASRYFKGPELLVDYQM--Y 208

Query: 159 DCVADMWSLGITALEMAEGKPPY--GD--IHPMRAIF----------------------- 191
           D   DMWSLG     M   K P+  G      +  I                        
Sbjct: 209 DYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRF 268

Query: 192 --MIPTKPPPSFRE------PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
             ++       +          + +PE +DF+ + L  + + R TA E + H +
Sbjct: 269 NDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPY 322

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 79.2 bits (196), Expect = 1e-17
 Identities = 52/234 (22%), Positives = 89/234 (38%), Gaps = 45/234 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQ D+PY+V+  G     +   +VME    G ++  ++ + + + +  I  ++     G
Sbjct: 72  MQQLDNPYIVRMIGICEAES-WMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSMG 129

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A N+LL T+ +A
Sbjct: 130 MKYLEESNFVHRD---------------------------------LAARNVLLVTQHYA 156

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MAE 176
           K++DFG++  L              +   W APE I    +   +D+WS G+   E  + 
Sbjct: 157 KISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSY 216

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           G+ PY  +       M+        R   P     E  D ++ C   + E R  
Sbjct: 217 GQKPYRGMKGSEVTAMLEK----GERMGCPAGCPREMYDLMNLCWTYDVENRPG 266

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 60/311 (19%), Positives = 96/311 (30%), Gaps = 129/311 (41%)

Query: 21  DLWIVMEYCGAGSVSDIMRLRKK--TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS 78
           +L+IV+E       SD+ +L K    L+E+ I TIL + L G  ++H    IHRD     
Sbjct: 104 ELYIVLEIAD----SDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESGIIHRD----- 154

Query: 79  GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVA---------- 128
                                       LK  N LLN +   K+ DFG+A          
Sbjct: 155 ----------------------------LKPANCLLNQDCSVKVCDFGLARTINSEKDTN 186

Query: 129 --GQLTDTMAKRNTVIGTPFWM----------APEVI-QEIGYDCVADMWSLG-ITALEM 174
               L +              +          APE+I  +  Y    D+WS G I     
Sbjct: 187 IVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCI----F 242

Query: 175 AE----------------------------------------------------GKPPYG 182
           AE                                                    G P   
Sbjct: 243 AELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTED 302

Query: 183 DIHPMRA------IFMIPTKPPPSFRE--PDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           D+  +        I + P + P + ++  P + + + I+ +   L  NP +R T  + L+
Sbjct: 303 DLKNINKPEVIKYIKLFPHRKPINLKQKYPSI-SDDGINLLESMLKFNPNKRITIDQALD 361

Query: 235 HEFIQR-HDTD 244
           H +++      
Sbjct: 362 HPYLKDVRKKK 372

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 78.8 bits (195), Expect = 1e-17
 Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 40/188 (21%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+  D P++VK  G   +    WI+ME    G +   +   K +L    +        K 
Sbjct: 67  MKNLDHPHIVKLIGIIEEEP-TWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKA 125

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     +HRD                                 +   NIL+ +    
Sbjct: 126 MAYLESINCVHRD---------------------------------IAVRNILVASPECV 152

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEMA-E 176
           KL DFG++  + D    + +   T     WM+PE I    +   +D+W   +   E+   
Sbjct: 153 KLGDFGLSRYIEDEDYYKAS--VTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSF 210

Query: 177 GKPPYGDI 184
           GK P+  +
Sbjct: 211 GKQPFFWL 218

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 47/235 (20%), Positives = 87/235 (37%), Gaps = 46/235 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +R   ++ +S   +  +      
Sbjct: 63  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 123 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 149

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-MA 175
            K+ADFG++  +T      +   G  F   W APE +    +   +D+W+ G+   E   
Sbjct: 150 VKVADFGLSRLMTGDTYTAHA--GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207

Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
            G  PY  I   +   ++       +R   P+    +  + +  C   NP +R +
Sbjct: 208 YGMSPYPGIDLSQVYELLEK----DYRMERPEGCPEKVYELMRACWQWNPSDRPS 258

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 78.5 bits (194), Expect = 5e-17
 Identities = 58/251 (23%), Positives = 95/251 (37%), Gaps = 52/251 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKN-TDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTL 58
           M Q     +V+  G   +    L+IV EY   GS+ D +R R +  L  D +     D  
Sbjct: 240 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVC 299

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           + +EYL     +HRD                                 L A N+L++ + 
Sbjct: 300 EAMEYLEGNNFVHRD---------------------------------LAARNVLVSEDN 326

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALEMA 175
            AK++DFG+  + + T               W APE ++E  +   +D+WS GI   E+ 
Sbjct: 327 VAKVSDFGLTKEASSTQD------TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIY 380

Query: 176 -EGKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATASEM 232
             G+ PY  I     +  +       ++   PD   P   D +  C   +   R T  ++
Sbjct: 381 SFGRVPYPRIPLKDVVPRVEK----GYKMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQL 436

Query: 233 LNH-EFIQRHD 242
               E I+ H+
Sbjct: 437 REQLEHIRTHE 447

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 78.1 bits (193), Expect = 5e-17
 Identities = 44/281 (15%), Positives = 81/281 (28%), Gaps = 66/281 (23%)

Query: 5   DSPYVVKYYGS-YFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLE 62
           +    V       F    + I  E  G  +  + ++    +      +  +       L 
Sbjct: 80  NKFLCVLMSDWFNFHG-HMCIAFELLGK-NTFEFLKENNFQPYPLPHVRHMAYQLCHALR 137

Query: 63  YLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA-- 120
           +LH  +  H D+K                  N++           +  +    +  +   
Sbjct: 138 FLHENQLTHTDLKPE----------------NILFVNSEFETLYNEHKSCEEKSVKNTSI 181

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP- 179
           ++ADFG A    +      T++ T  +  PEVI E+G+    D+WS+G    E   G   
Sbjct: 182 RVADFGSATFDHEHH---TTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTL 238

Query: 180 ---------------------------------------PYGDIHPMRAIFMIPTKPPPS 200
                                                   + +            KP  S
Sbjct: 239 FQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKS 298

Query: 201 -FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
              +  +   +  D + R L  +P +R T +E L H F   
Sbjct: 299 YMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAG 339

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 78.7 bits (194), Expect = 5e-17
 Identities = 52/306 (16%), Positives = 94/306 (30%), Gaps = 110/306 (35%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRL-----------RKKTLSE 47
           +++   P V+     +  + D  +W++ +Y       D+  +           +   L  
Sbjct: 72  LRELKHPNVISLQKVFLSHADRKVWLLFDYAE----HDLWHIIKFHRASKANKKPVQLPR 127

Query: 48  DEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRL 107
             + ++L   L G+ YLH    +HRD                                 L
Sbjct: 128 GMVKSLLYQILDGIHYLHANWVLHRD---------------------------------L 154

Query: 108 KAGNILLNTE----GHAKLADFGVA---GQLTDTMAKRNTVIGTPFWM-APEVIQEIG-- 157
           K  NIL+  E    G  K+AD G A         +A  + V+ T FW  APE++  +G  
Sbjct: 155 KPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVT-FWYRAPELL--LGAR 211

Query: 158 -YDCVADMWSLG-ITALEMAEGKP------------PYGDIHPMRAIFMI---PT----- 195
            Y    D+W++G I A E+   +P                   +  IF +   P      
Sbjct: 212 HYTKAIDIWAIGCIFA-ELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWE 270

Query: 196 -----------------KPPPSFREPDVWTPEF-------IDFVSRCLVKNPEERATASE 231
                                +                     + + L  +P +R T+ +
Sbjct: 271 DIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQ 330

Query: 232 MLNHEF 237
            +   +
Sbjct: 331 AMQDPY 336

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 77.3 bits (191), Expect = 6e-17
 Identities = 48/236 (20%), Positives = 87/236 (36%), Gaps = 49/236 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD-LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           M+    P V+   G   ++     +V+ Y   G + + +R      +  ++        K
Sbjct: 80  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 139

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G++YL  ++ +HRD                                 L A N +L+ +  
Sbjct: 140 GMKYLASKKFVHRD---------------------------------LAARNCMLDEKFT 166

Query: 120 AKLADFGVAGQL--TDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITALE-M 174
            K+ADFG+A  +   +  +  N      P  WMA E +Q   +   +D+WS G+   E M
Sbjct: 167 VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM 226

Query: 175 AEGKPPYGDIHPMRAIFMIPTK---PPPSFREPDVWTPEFI-DFVSRCLVKNPEER 226
             G PPY D++       +        P +       P+ + + + +C     E R
Sbjct: 227 TRGAPPYPDVNTFDITVYLLQGRRLLQPEY------CPDPLYEVMLKCWHPKAEMR 276

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 77.3 bits (191), Expect = 6e-17
 Identities = 41/271 (15%), Positives = 78/271 (28%), Gaps = 70/271 (25%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +    ++V  YG      +  +V E+   GS+   ++  K  ++      +       
Sbjct: 66  MSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAA 125

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH- 119
           + +L     IH +                                 + A NILL  E   
Sbjct: 126 MHFLEENTLIHGN---------------------------------VCAKNILLIREEDR 152

Query: 120 -------AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIG-YDCVADMWSLGIT 170
                   KL+D G++  +      +         W+ PE I+     +   D WS G T
Sbjct: 153 KTGNPPFIKLSDPGISITVLPKDILQ-----ERIPWVPPECIENPKNLNLATDKWSFGTT 207

Query: 171 ALE-MAEGKPPYGDIHPMRAIFMIPT-----KPPPSFREPDVWTPEFIDFVSRCLVKNPE 224
             E  + G  P   +   R +           P            E  + ++ C+   P+
Sbjct: 208 LWEICSGGDKPLSALDSQRKLQFYEDRHQLPAPKA---------AELANLINNCMDYEPD 258

Query: 225 ER-------ATASEMLNHEFIQRHDTDPSQN 248
            R          + +   + + R       +
Sbjct: 259 HRPSFRAIIRDLNSLFTPDLVPRGSHHHHHH 289

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 78.2 bits (193), Expect = 7e-17
 Identities = 53/233 (22%), Positives = 89/233 (38%), Gaps = 43/233 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           M+      +VK +    K   ++I+ E+   GS+ D ++  + +     ++        +
Sbjct: 237 MKTLQHDKLVKLHAVVTKEP-IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAE 295

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 296 GMAFIEQRNYIHRD---------------------------------LRAANILVSASLV 322

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI  +E+   G
Sbjct: 323 CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYG 382

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERAT 228
           + PY  +     I  +       +R   P+    E  + + RC    PEER T
Sbjct: 383 RIPYPGMSNPEVIRALERG----YRMPRPENCPEELYNIMMRCWKNRPEERPT 431

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 77.5 bits (191), Expect = 1e-16
 Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 47/235 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD-LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           M+    P V+   G   ++     +V+ Y   G + + +R      +  ++        K
Sbjct: 144 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 203

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+++L  ++ +HRD                                 L A N +L+ +  
Sbjct: 204 GMKFLASKKFVHRD---------------------------------LAARNCMLDEKFT 230

Query: 120 AKLADFGVAGQL--TDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITALE-M 174
            K+ADFG+A  +   +  +  N      P  WMA E +Q   +   +D+WS G+   E M
Sbjct: 231 VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM 290

Query: 175 AEGKPPYGDIHPMRAIFMIPTK---PPPSFREPDVWTPEFIDFVSRCLVKNPEER 226
             G PPY D++       +        P +    ++     + + +C     E R
Sbjct: 291 TRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLY-----EVMLKCWHPKAEMR 340

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 75.3 bits (186), Expect = 3e-16
 Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 45/191 (23%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD-LWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTL 58
           M Q     +V+  G   +    L+IV EY   GS+ D +R R +  L  D +     D  
Sbjct: 68  MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVC 127

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           + +EYL     +HRD                                 L A N+L++ + 
Sbjct: 128 EAMEYLEGNNFVHRD---------------------------------LAARNVLVSEDN 154

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWSLGITALE-M 174
            AK++DFG+  + + T               W APE ++E  +   +D+WS GI   E  
Sbjct: 155 VAKVSDFGLTKEASSTQD------TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIY 208

Query: 175 AEGKPPYGDIH 185
           + G+ PY  I 
Sbjct: 209 SFGRVPYPRIP 219

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 75.4 bits (186), Expect = 4e-16
 Identities = 51/285 (17%), Positives = 80/285 (28%), Gaps = 74/285 (25%)

Query: 5   DSPYVVKYYGS-YFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLKGLE 62
            +   V+           + IV E  G  S  D ++         D I  +     K + 
Sbjct: 75  STFRCVQMLEWFEHHG-HICIVFELLGL-STYDFIKENGFLPFRLDHIRKMAYQICKSVN 132

Query: 63  YLHLRRKIHRDIK------AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
           +LH  +  H D+K        S             +  +I   I                
Sbjct: 133 FLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDI---------------- 176

Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
               K+ DFG A    +     +T++ T  + APEVI  +G+    D+WS+G   +E   
Sbjct: 177 ----KVVDFGSATYDDEHH---STLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYL 229

Query: 177 GKP----------------------------------------PYGDIHPMRAIFMIPTK 196
           G                                           + +            K
Sbjct: 230 GFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACK 289

Query: 197 PPPSF-REPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           P   F    DV      D + + L  +P +R T  E L H F   
Sbjct: 290 PLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDL 334

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 74.6 bits (184), Expect = 5e-16
 Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 37/187 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLK 59
           M+Q     +V+ Y    +   ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 62  MKQLQHQRLVRLYAVVTQE-PIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 120

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 121 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 147

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D           P  W APE I    +   +D+WS GI   E+   G
Sbjct: 148 CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 207

Query: 178 KPPYGDI 184
           + PY  +
Sbjct: 208 RIPYPGM 214

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 46/237 (19%), Positives = 86/237 (36%), Gaps = 47/237 (19%)

Query: 1   MQQCDSPYVVKYYG-SYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           M+  + P V+   G          +++ Y   G +   +R  ++  +  ++ +      +
Sbjct: 76  MRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVAR 135

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+EYL  ++ +HRD                                 L A N +L+    
Sbjct: 136 GMEYLAEQKFVHRD---------------------------------LAARNCMLDESFT 162

Query: 120 AKLADFGVAGQL--TDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLGITALEMA 175
            K+ADFG+A  +   +  + +       P  W A E +Q   +   +D+WS G+   E+ 
Sbjct: 163 VKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELL 222

Query: 176 E-GKPPYGDIHPMRAIFMIPTK---PPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
             G PPY  I P      +      P P +    ++       + +C   +P  R T
Sbjct: 223 TRGAPPYRHIDPFDLTHFLAQGRRLPQPEYCPDSLY-----QVMQQCWEADPAVRPT 274

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 69.3 bits (170), Expect = 5e-14
 Identities = 54/266 (20%), Positives = 90/266 (33%), Gaps = 65/266 (24%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK------KTLSEDEIATIL 54
           + + +   +V+  G   ++   +I+ME    G +   +R  +       +L+  ++  + 
Sbjct: 87  ISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 146

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
            D   G +YL     IHRDI A                             R    N LL
Sbjct: 147 RDIACGCQYLEENHFIHRDIAA-----------------------------R----NCLL 173

Query: 115 NTEGH---AKLADFGVAGQL--TDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWS 166
              G    AK+ DFG+A  +       K            WM PE   E  +    D WS
Sbjct: 174 TCPGPGRVAKIGDFGMARDIYRASYYRKGG---CAMLPVKWMPPEAFMEGIFTSKTDTWS 230

Query: 167 LGITALEMA-EGKPPYGDIHPMRAIFMIPT----KPPPSFREPDVWTPEFI-DFVSRCLV 220
            G+   E+   G  PY        +  + +     PP +        P  +   +++C  
Sbjct: 231 FGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKN-------CPGPVYRIMTQCWQ 283

Query: 221 KNPEERATASEMLNHEFIQRHDTDPS 246
             PE+R   + +   E I+    DP 
Sbjct: 284 HQPEDRPNFAII--LERIEYCTQDPD 307

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 69.0 bits (169), Expect = 8e-14
 Identities = 53/266 (19%), Positives = 90/266 (33%), Gaps = 65/266 (24%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK------KTLSEDEIATIL 54
           + + +   +V+  G   ++   +I++E    G +   +R  +       +L+  ++  + 
Sbjct: 128 ISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVA 187

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
            D   G +YL     IHRDI A                             R    N LL
Sbjct: 188 RDIACGCQYLEENHFIHRDIAA-----------------------------R----NCLL 214

Query: 115 NTEGH---AKLADFGVAGQL--TDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWS 166
              G    AK+ DFG+A  +       K            WM PE   E  +    D WS
Sbjct: 215 TCPGPGRVAKIGDFGMARDIYRAGYYRKGG---CAMLPVKWMPPEAFMEGIFTSKTDTWS 271

Query: 167 LGITALEMA-EGKPPYGDIHPMRAIFMIPT----KPPPSFREPDVWTPEFI-DFVSRCLV 220
            G+   E+   G  PY        +  + +     PP +        P  +   +++C  
Sbjct: 272 FGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPKN-------CPGPVYRIMTQCWQ 324

Query: 221 KNPEERATASEMLNHEFIQRHDTDPS 246
             PE+R   + +   E I+    DP 
Sbjct: 325 HQPEDRPNFAII--LERIEYCTQDPD 348

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 46/267 (17%), Positives = 96/267 (35%), Gaps = 63/267 (23%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMR-LRKKTLSEDEIATILCDTL- 58
           M++ +  +VV+  G   +     ++ME    G +   +R LR    +   +A      + 
Sbjct: 82  MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMI 141

Query: 59  -------KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
                   G+ YL+  + +HRD                                 L A N
Sbjct: 142 QMAGEIADGMAYLNANKFVHRD---------------------------------LAARN 168

Query: 112 ILLNTEGHAKLADFGVAGQLTDT---MAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSL 167
            ++  +   K+ DFG+   + +T         ++  P  WM+PE +++  +   +D+WS 
Sbjct: 169 CMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLL--PVRWMSPESLKDGVFTTYSDVWSF 226

Query: 168 GITALEMAE-GKPPYGDIHPMRAIFMIPT----KPPPSFREPDVWTPEFI-DFVSRCLVK 221
           G+   E+A   + PY  +   + +  +        P +        P+ + + +  C   
Sbjct: 227 GVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDN-------CPDMLFELMRMCWQY 279

Query: 222 NPEERATASEMLNHEFIQRHDTDPSQN 248
           NP+ R +  E+     I+       + 
Sbjct: 280 NPKMRPSFLEI--ISSIKEEMEPGFRE 304

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 50/269 (18%), Positives = 93/269 (34%), Gaps = 60/269 (22%)

Query: 1   MQQCDSPYVVKYYG------SYFKNTDLWIVMEYCGAGSVSDIMRLRK-----KTLSEDE 49
           M++ D P+V K  G      +  +     +++ +   G +   +   +       L    
Sbjct: 79  MKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQT 138

Query: 50  IATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKA 109
           +   + D   G+EYL  R  IHRD+ A                             R   
Sbjct: 139 LVRFMVDIACGMEYLSSRNFIHRDLAA-----------------------------R--- 166

Query: 110 GNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSL 167
            N +L  +    +ADFG++ ++      R       P  W+A E + +  Y   +D+W+ 
Sbjct: 167 -NCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAF 225

Query: 168 GITALEMAE-GKPPYGDIHPMRAIFMIPTK---PPPSFREPDVWTPEFI-DFVSRCLVKN 222
           G+T  E+   G+ PY  I        +        P          E + D + +C   +
Sbjct: 226 GVTMWEIMTRGQTPYAGIENAEIYNYLIGGNRLKQPPE------CMEEVYDLMYQCWSAD 279

Query: 223 PEERATASE---MLNHEFIQRHDTDPSQN 248
           P++R + +     L +          SQ+
Sbjct: 280 PKQRPSFTCLRMELENILGHLSVLSTSQD 308

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 49/269 (18%), Positives = 88/269 (32%), Gaps = 66/269 (24%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR--------------KKTLS 46
           +      ++V+++G   +   L +V EY   G ++  +R                   L 
Sbjct: 97  LTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLG 156

Query: 47  EDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFR 106
             ++  +      G+ YL     +HRD                                 
Sbjct: 157 LGQLLAVASQVAAGMVYLAGLHFVHRD--------------------------------- 183

Query: 107 LKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNTVIGTPF-WMAPEVIQEIGYDCVA 162
           L   N L+      K+ DFG++  +  T        T++  P  WM PE I    +   +
Sbjct: 184 LATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTML--PIRWMPPESILYRKFTTES 241

Query: 163 DMWSLGITALEMA-EGKPPYGDIHPMRAIFMIPTK---PPPSFREPDVWTPEFI-DFVSR 217
           D+WS G+   E+   GK P+  +    AI  I        P         P  +   +  
Sbjct: 242 DVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRA------CPPEVYAIMRG 295

Query: 218 CLVKNPEERATASEMLNHEFIQRHDTDPS 246
           C  + P++R +  ++  H  +Q     P 
Sbjct: 296 CWQREPQQRHSIKDV--HARLQALAQAPP 322

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 46/252 (18%), Positives = 85/252 (33%), Gaps = 56/252 (22%)

Query: 1   MQQCDSPYVVKYYG-----SYFKNTDLWIVMEYCGAGSVSDIMRLRK-----KTLSEDEI 50
           M+    P V++  G     S        +++ +   G +   +   +     K +    +
Sbjct: 90  MKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTL 149

Query: 51  ATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAG 110
              + D   G+EYL  R  +HRD                                 L A 
Sbjct: 150 LKFMVDIALGMEYLSNRNFLHRD---------------------------------LAAR 176

Query: 111 NILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVADMWSLG 168
           N +L  +    +ADFG++ ++      R   I   P  W+A E + +  Y   +D+W+ G
Sbjct: 177 NCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFG 236

Query: 169 ITALEMAE-GKPPYGDIHPMRAIFMIPTK---PPPSFREPDVWTPEFI-DFVSRCLVKNP 223
           +T  E+A  G  PY  +        +        P          + + + +  C   +P
Sbjct: 237 VTMWEIATRGMTPYPGVQNHEMYDYLLHGHRLKQPED------CLDELYEIMYSCWRTDP 290

Query: 224 EERATASEMLNH 235
            +R T S +   
Sbjct: 291 LDRPTFSVLRLQ 302

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 63.0 bits (154), Expect = 6e-12
 Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 38/131 (29%)

Query: 53  ILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
           I      G+ +LH    IHRDIK+                                  NI
Sbjct: 138 IAQGAANGINFLHENHHIHRDIKSA---------------------------------NI 164

Query: 113 LLNTEGHAKLADFGVA--GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV-ADMWSLGI 169
           LL+    AK++DFG+A   +        + ++GT  +MAPE ++  G     +D++S G+
Sbjct: 165 LLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALR--GEITPKSDIYSFGV 222

Query: 170 TALEMAEGKPP 180
             LE+  G P 
Sbjct: 223 VLLEIITGLPA 233

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 62.6 bits (153), Expect = 9e-12
 Identities = 51/269 (18%), Positives = 84/269 (31%), Gaps = 67/269 (24%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGS---------------VSDIMRLRKKTL 45
           +      ++VK+YG       L +V EY   G                V    R  K  L
Sbjct: 71  LTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGEL 130

Query: 46  SEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLF 105
              ++  I      G+ YL  +  +HRD                                
Sbjct: 131 GLSQMLHIASQIASGMVYLASQHFVHRD-------------------------------- 158

Query: 106 RLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPF---WMAPEVIQEIGYDCV 161
            L   N L+      K+ DFG++  +  T   +      T     WM PE I    +   
Sbjct: 159 -LATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGG--HTMLPIRWMPPESIMYRKFTTE 215

Query: 162 ADMWSLGITALEMA-EGKPPYGDIHPMRAIFMIPTK---PPPSFREPDVWTPEFI-DFVS 216
           +D+WS G+   E+   GK P+  +     I  I        P         P+ + D + 
Sbjct: 216 SDVWSFGVILWEIFTYGKQPWFQLSNTEVIECITQGRVLERPRV------CPKEVYDVML 269

Query: 217 RCLVKNPEERATASEMLNHEFIQRHDTDP 245
            C  + P++R    E+  ++ +       
Sbjct: 270 GCWQREPQQRLNIKEI--YKILHALGKAT 296

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 42/214 (19%), Positives = 69/214 (32%), Gaps = 57/214 (26%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGS---------------VSDIMRLRKKTL 45
             +   P VV   G   K+  L ++  YC  G                 +D  R  K  L
Sbjct: 66  RARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSAL 125

Query: 46  SEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLF 105
              +   ++     G+EYL     +H+D                                
Sbjct: 126 EPPDFVHLVAQIAAGMEYLSSHHVVHKD-------------------------------- 153

Query: 106 RLKAGNILLNTEGHAKLADFGVAGQL--TDTMAKRNTVIGTPF---WMAPEVIQEIGYDC 160
            L   N+L+  + + K++D G+  ++   D          +     WMAPE I    +  
Sbjct: 154 -LATRNVLVYDKLNVKISDLGLFREVYAADYYKLLG---NSLLPIRWMAPEAIMYGKFSI 209

Query: 161 VADMWSLGITALEMAE-GKPPYGDIHPMRAIFMI 193
            +D+WS G+   E+   G  PY        + MI
Sbjct: 210 DSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMI 243

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 46/193 (23%), Positives = 72/193 (37%), Gaps = 53/193 (27%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL-------- 58
             +V   G+      + ++ EYC  G + + +R + + L  D    I   T         
Sbjct: 110 ENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHF 169

Query: 59  -----KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNIL 113
                +G+ +L  +  IHRD                                 + A N+L
Sbjct: 170 SSQVAQGMAFLASKNCIHRD---------------------------------VAARNVL 196

Query: 114 LNTEGHAKLADFGVAGQLTDT---MAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGI 169
           L     AK+ DFG+A  + +    + K N  +  P  WMAPE I +  Y   +D+WS GI
Sbjct: 197 LTNGHVAKIGDFGLARDIMNDSNYIVKGNARL--PVKWMAPESIFDCVYTVQSDVWSYGI 254

Query: 170 TALEMAE-GKPPY 181
              E+   G  PY
Sbjct: 255 LLWEIFSLGLNPY 267

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 53/256 (20%), Positives = 96/256 (37%), Gaps = 63/256 (24%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGS---------------VSDIMRLRKKTLSEDEIA 51
             ++   G+  ++  L++++EY   G+                 DI R+ ++ ++  ++ 
Sbjct: 147 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 206

Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
           +      +G+EYL  ++ IHRD                                 L A N
Sbjct: 207 SCTYQLARGMEYLASQKCIHRD---------------------------------LAARN 233

Query: 112 ILLNTEGHAKLADFGVAGQLTDT---MAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSL 167
           +L+      K+ADFG+A  + +        N  +  P  WMAPE + +  Y   +D+WS 
Sbjct: 234 VLVTENNVMKIADFGLARDINNIDYYKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 291

Query: 168 GITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPE 224
           G+   E+   G  PY  I       ++        R  +P   T E    +  C    P 
Sbjct: 292 GVLMWEIFTLGGSPYPGIPVEELFKLLKEG----HRMDKPANCTNELYMMMRDCWHAVPS 347

Query: 225 ERATASEMLNHEFIQR 240
           +R T  ++   E + R
Sbjct: 348 QRPTFKQL--VEDLDR 361

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 60.5 bits (147), Expect = 8e-11
 Identities = 53/264 (20%), Positives = 97/264 (36%), Gaps = 65/264 (24%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIA 51
             ++   G+  ++  L++++EY   G++ + ++ R+               + LS  ++ 
Sbjct: 135 KNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLV 194

Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
           +      +G+EYL  ++ IHRD                                 L A N
Sbjct: 195 SCAYQVARGMEYLASKKCIHRD---------------------------------LAARN 221

Query: 112 ILLNTEGHAKLADFGVAGQL--TDTMAKRNTVIGTPF---WMAPEVIQEIGYDCVADMWS 166
           +L+  +   K+ADFG+A  +   D   K            WMAPE + +  Y   +D+WS
Sbjct: 222 VLVTEDNVMKIADFGLARDIHHIDYYKKTT---NGRLPVKWMAPEALFDRIYTHQSDVWS 278

Query: 167 LGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNP 223
            G+   E+   G  PY  +       ++        R  +P   T E    +  C    P
Sbjct: 279 FGVLLWEIFTLGGSPYPGVPVEELFKLLKE----GHRMDKPSNCTNELYMMMRDCWHAVP 334

Query: 224 EERATASEMLNHEFIQRHDTDPSQ 247
            +R T  ++   E + R     S 
Sbjct: 335 SQRPTFKQL--VEDLDRIVALTSN 356

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 60.0 bits (146), Expect = 8e-11
 Identities = 59/266 (22%), Positives = 98/266 (36%), Gaps = 66/266 (24%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT---------LSEDEIATILCDT 57
             +V   G+        ++ EYC  G + + +R ++ +         + ED+   +  + 
Sbjct: 87  MNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLED 146

Query: 58  L--------KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKA 109
           L        KG+ +L  +  IHRD                                 L A
Sbjct: 147 LLSFSYQVAKGMAFLASKNCIHRD---------------------------------LAA 173

Query: 110 GNILLNTEGHAKLADFGVAGQLTDTM---AKRNTVIGTPF-WMAPEVIQEIGYDCVADMW 165
            NILL      K+ DFG+A  + +      K N  +  P  WMAPE I    Y   +D+W
Sbjct: 174 RNILLTHGRITKICDFGLARDIKNDSNYVVKGNARL--PVKWMAPESIFNCVYTFESDVW 231

Query: 166 SLGITALEMAE-GKPPYGDIHPMRAIF-MIPTKPPPSFR--EPDVWTPEFIDFVSRCLVK 221
           S GI   E+   G  PY  +      + MI       FR   P+    E  D +  C   
Sbjct: 232 SYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG----FRMLSPEHAPAEMYDIMKTCWDA 287

Query: 222 NPEERATASEMLNHEFIQRHDTDPSQ 247
           +P +R T  ++   + I++  ++ + 
Sbjct: 288 DPLKRPTFKQI--VQLIEKQISESTN 311

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 46/206 (22%), Positives = 76/206 (36%), Gaps = 52/206 (25%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---------------KKTLSEDEIA 51
           P ++   G+      L++ +EY   G++ D +R                   TLS  ++ 
Sbjct: 86  PNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL 145

Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
               D  +G++YL  ++ IHRD                                 L A N
Sbjct: 146 HFAADVARGMDYLSQKQFIHRD---------------------------------LAARN 172

Query: 112 ILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSLGIT 170
           IL+     AK+ADFG++      + K    +  P  WMA E +    Y   +D+WS G+ 
Sbjct: 173 ILVGENYVAKIADFGLSRGQEVYVKKTMGRL--PVRWMAIESLNYSVYTTNSDVWSYGVL 230

Query: 171 ALE-MAEGKPPYGDIHPMRAIFMIPT 195
             E ++ G  PY  +        +P 
Sbjct: 231 LWEIVSLGGTPYCGMTCAELYEKLPQ 256

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 53/256 (20%), Positives = 96/256 (37%), Gaps = 63/256 (24%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGS---------------VSDIMRLRKKTLSEDEIA 51
             ++   G+  ++  L++++EY   G+                 DI R+ ++ ++  ++ 
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLV 160

Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
           +      +G+EYL  ++ IHRD                                 L A N
Sbjct: 161 SCTYQLARGMEYLASQKCIHRD---------------------------------LAARN 187

Query: 112 ILLNTEGHAKLADFGVAGQLTDT---MAKRNTVIGTPF-WMAPEVIQEIGYDCVADMWSL 167
           +L+      K+ADFG+A  + +        N  +  P  WMAPE + +  Y   +D+WS 
Sbjct: 188 VLVTENNVMKIADFGLARDINNIDYYKKTTNGRL--PVKWMAPEALFDRVYTHQSDVWSF 245

Query: 168 GITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFR--EPDVWTPEFIDFVSRCLVKNPE 224
           G+   E+   G  PY  I       ++        R  +P   T E    +  C    P 
Sbjct: 246 GVLMWEIFTLGGSPYPGIPVEELFKLLKEG----HRMDKPANCTNELYMMMRDCWHAVPS 301

Query: 225 ERATASEMLNHEFIQR 240
           +R T  ++   E + R
Sbjct: 302 QRPTFKQL--VEDLDR 315

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 54/233 (23%), Positives = 76/233 (32%), Gaps = 55/233 (23%)

Query: 26  MEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDR 85
                         L K  L+ + +        KG+E+L  R+ IHRD            
Sbjct: 171 KSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRD------------ 218

Query: 86  LDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGT- 144
                                L A NILL+ +   K+ DFG+A  +              
Sbjct: 219 ---------------------LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARL 257

Query: 145 PF-WMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIF--------MIP 194
           P  WMAPE I +  Y   +D+WS G+   E+   G  PY  +               M  
Sbjct: 258 PLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRM-- 315

Query: 195 TKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ 247
                  R PD  TPE    +  C    P +R T SE+   E +       +Q
Sbjct: 316 -------RAPDYTTPEMYQTMLDCWHGEPSQRPTFSEL--VEHLGNLLQANAQ 359

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 57.6 bits (140), Expect = 5e-10
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 53/133 (39%)

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           +GL YLH R  IHRD+K+                                  NILL+   
Sbjct: 150 RGLHYLHTRAIIHRDVKSI---------------------------------NILLDENF 176

Query: 119 HAKLADFGVAGQLTDTMAKRNT-----VIGTPFWMAPEVIQEIGYDCV------ADMWSL 167
             K+ DFG++ + T+      T     V GT  ++ PE      Y         +D++S 
Sbjct: 177 VPKITDFGISKKGTEL---DQTHLSTVVKGTLGYIDPE------YFIKGRLTEKSDVYSF 227

Query: 168 GITALEMAEGKPP 180
           G+   E+   +  
Sbjct: 228 GVVLFEVLCARSA 240

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 56/279 (20%), Positives = 91/279 (32%), Gaps = 77/279 (27%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK------------------ 42
           M + D+P +VK  G       + ++ EY   G +++ +R                     
Sbjct: 104 MAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARV 163

Query: 43  -----KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVIT 97
                  LS  E   I      G+ YL  R+ +HRD+                       
Sbjct: 164 SSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLAT--------------------- 202

Query: 98  NQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNTVIGTPF-WMAPEVI 153
                   R    N L+      K+ADFG++  +       A  N  I  P  WM PE I
Sbjct: 203 --------R----NCLVGENMVVKIADFGLSRNIYSADYYKADGNDAI--PIRWMPPESI 248

Query: 154 QEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPT----KPPPSFREPDVWT 208
               Y   +D+W+ G+   E+   G  PY  +     I+ +        P +        
Sbjct: 249 FYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPEN-------C 301

Query: 209 PEFI-DFVSRCLVKNPEERATASEMLNHEFIQRHDTDPS 246
           P  + + +  C  K P +R +   +  H  +QR      
Sbjct: 302 PLELYNLMRLCWSKLPADRPSFCSI--HRILQRMCERAE 338

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 56/269 (20%), Positives = 93/269 (34%), Gaps = 67/269 (24%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL-------- 58
             +V   G+   +  ++++ EYC  G + + +R +++  SEDEI       L        
Sbjct: 109 ENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNV 168

Query: 59  --------------KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTL 104
                         KG+E+L  +  +HRD                               
Sbjct: 169 LTFEDLLCFAYQVAKGMEFLEFKSCVHRD------------------------------- 197

Query: 105 FRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGT-PF-WMAPEVIQEIGYDCVA 162
             L A N+L+      K+ DFG+A  +              P  WMAPE + E  Y   +
Sbjct: 198 --LAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKS 255

Query: 163 DMWSLGITALEMAE-GKPPYGDIHPMRAIF-MIPTKPPPSFR--EPDVWTPEFIDFVSRC 218
           D+WS GI   E+   G  PY  I      + +I       F+  +P   T E    +  C
Sbjct: 256 DVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQN----GFKMDQPFYATEEIYIIMQSC 311

Query: 219 LVKNPEERATASEMLNHEFIQRHDTDPSQ 247
              +  +R +   +    F+     D  +
Sbjct: 312 WAFDSRKRPSFPNL--TSFLGCQLADAEE 338

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 43/209 (20%), Positives = 82/209 (39%), Gaps = 63/209 (30%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK------------------ 42
           ++Q + P+V+K YG+  ++  L +++EY   GS+   +R  +                  
Sbjct: 80  LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSL 139

Query: 43  -----KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVIT 97
                + L+  ++ +      +G++YL   + +HRD                        
Sbjct: 140 DHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRD------------------------ 175

Query: 98  NQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNTVIGTPF-WMAPEVI 153
                    L A NIL+      K++DFG++  + +    + +    I  P  WMA E +
Sbjct: 176 ---------LAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRI--PVKWMAIESL 224

Query: 154 QEIGYDCVADMWSLGITALEMAE-GKPPY 181
            +  Y   +D+WS G+   E+   G  PY
Sbjct: 225 FDHIYTTQSDVWSFGVLLWEIVTLGGNPY 253

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 48/203 (23%), Positives = 74/203 (36%), Gaps = 57/203 (28%)

Query: 1   MQQCDS-PYVVKYYGSYFKNTD-LWIVMEYCGAGS---------------VSDIMRLRKK 43
           +        VV   G+  K    L +++E+C  G+                     L K 
Sbjct: 84  LIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKD 143

Query: 44  TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKT 103
            L+ + +        KG+E+L  R+ IHRD                              
Sbjct: 144 FLTLEHLICYSFQVAKGMEFLASRKCIHRD------------------------------ 173

Query: 104 LFRLKAGNILLNTEGHAKLADFGVAGQLTDT---MAKRNTVIGTPF-WMAPEVIQEIGYD 159
              L A NILL+ +   K+ DFG+A  +      + K +  +  P  WMAPE I +  Y 
Sbjct: 174 ---LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARL--PLKWMAPETIFDRVYT 228

Query: 160 CVADMWSLGITALEMAE-GKPPY 181
             +D+WS G+   E+   G  PY
Sbjct: 229 IQSDVWSFGVLLWEIFSLGASPY 251

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 39/134 (29%)

Query: 53  ILCDTLKGLEYLH--LRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKA 109
           I   + +GL YLH     KI HRD+KA                                 
Sbjct: 136 IALGSARGLAYLHDHCDPKIIHRDVKAA-------------------------------- 163

Query: 110 GNILLNTEGHAKLADFGVAGQLTDTMAKRNT-VIGTPFWMAPEVIQEIGYDCV-ADMWSL 167
            NILL+ E  A + DFG+A  +        T V GT   +APE +   G      D++  
Sbjct: 164 -NILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLST-GKSSEKTDVFGY 221

Query: 168 GITALEMAEGKPPY 181
           G+  LE+  G+  +
Sbjct: 222 GVMLLELITGQRAF 235

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 50.3 bits (119), Expect = 2e-07
 Identities = 28/154 (18%), Positives = 46/154 (29%), Gaps = 47/154 (30%)

Query: 15  SYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKI-HRD 73
            +FK+  L+IV+E+   G   D+ ++R K  S     +IL      L       +  HRD
Sbjct: 130 DFFKDDQLFIVLEFEFGG--IDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRD 187

Query: 74  IKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD--------- 124
                                            L  GN+LL      KL           
Sbjct: 188 ---------------------------------LHWGNVLLKKTSLKKLHYTLNGKSSTI 214

Query: 125 --FGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI 156
              G+   + D    R    G   +    + +++
Sbjct: 215 PSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDL 248

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 10  VKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRK 69
           V Y+G    +    +V++  G  S+ D++ L  +  S   +A      L  ++ +H +  
Sbjct: 71  VYYFGQEGLHN--VLVIDLLGP-SLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSL 127

Query: 70  IHRDIK 75
           ++RDIK
Sbjct: 128 VYRDIK 133

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 10  VKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRK 69
           +++ G+        +VME  G  S+ D+     +  S   +  +    +  +EY+H +  
Sbjct: 70  IRWCGAEGDYN--VMVMELLGP-SLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNF 126

Query: 70  IHRDIK 75
           IHRD+K
Sbjct: 127 IHRDVK 132

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 10  VKYYGSYFKNTDLW--IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR 67
               G + KN   +  ++M+  G+  +  I     K  S   +  +    L  LEY+H  
Sbjct: 113 YWGSGLHDKNGKSYRFMIMDRFGS-DLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEH 171

Query: 68  RKIHRDIKA 76
             +H DIKA
Sbjct: 172 EYVHGDIKA 180

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 10  VKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRK 69
           V Y+G   K     +V+E  G  S+ D+  L  +T S   +  I    +  +EY+H +  
Sbjct: 70  VYYFGPCGKYN--AMVLELLGP-SLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNL 126

Query: 70  IHRDIK 75
           I+RD+K
Sbjct: 127 IYRDVK 132

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 10  VKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRK 69
           V+++G         +VM+  G  S+ D+     + LS   +  +    +  +E++H +  
Sbjct: 68  VRWFGVEGDYN--VLVMDLLGP-SLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSF 124

Query: 70  IHRDIK 75
           +HRDIK
Sbjct: 125 LHRDIK 130

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 10  VKYYGSYFKNTDLW--IVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR 67
               G        +  +VME  G   +  I         +  +  +    L  LEY+H  
Sbjct: 113 FYGSGLTEFKGRSYRFMVMERLGI-DLQKISGQNGT-FKKSTVLQLGIRMLDVLEYIHEN 170

Query: 68  RKIHRDIKA 76
             +H DIKA
Sbjct: 171 EYVHGDIKA 179

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 36/250 (14%), Positives = 75/250 (30%), Gaps = 57/250 (22%)

Query: 23  WIVMEYCGAGSVSDIMRLRKKTLSE-DEIATILCDTLKGLEY------LHLRRKIHRDIK 75
           W+ ++ C   S   ++ + +K L + D   T   D    ++         LRR +    K
Sbjct: 186 WLNLKNCN--SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS--K 241

Query: 76  AGSGTL-----VYDR--LDYCSIKC------------NVITNQIYKTLFRLKAGNILLNT 116
                L     V +    +  ++ C            + ++      +        L   
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 117 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMA--PEVIQE----------IGYDCVADM 164
           E  + L  +         +  R  +   P  ++   E I++          +  D +  +
Sbjct: 302 EVKSLLLKY--LDCRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 165 WSLGITALEMAEGKPPYGDIHPMRAIFM----IPTKPPPSF-REPDVWTPEFI--DFVSR 217
               +  LE AE +  +  +    ++F     IPT        +        +       
Sbjct: 359 IESSLNVLEPAEYRKMFDRL----SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 218 CLV-KNPEER 226
            LV K P+E 
Sbjct: 415 SLVEKQPKES 424

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 44/167 (26%)

Query: 24  IVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV 82
           +V+   G  S+   + +  K  LSE  +  + C  L  LE+LH    +H ++        
Sbjct: 135 LVLPSLGR-SLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNV-------- 185

Query: 83  YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAK--LADFGVAGQLTDT------ 134
                                     A NI ++ E  ++  LA +G A +   +      
Sbjct: 186 -------------------------TAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAY 220

Query: 135 -MAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
               R+   G   +++ ++ +  G    +D+ SLG   L+   G  P
Sbjct: 221 VEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLP 267

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	100.0
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
2dyl_A	318	Dual specificity mitogen-activated protein kinase	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	100.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	100.0
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3aln_A	327	Dual specificity mitogen-activated protein kinase;	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	100.0
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	100.0
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	100.0
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	100.0
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	100.0
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	100.0
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	100.0
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3pls_A	298	Macrophage-stimulating protein receptor; protein k	100.0
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	100.0
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	100.0
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	100.0
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	100.0
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	100.0
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	100.0
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	100.0
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	100.0
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	100.0
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	100.0
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	100.0
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	100.0
2a19_B	284	Interferon-induced, double-stranded RNA-activated	100.0
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	100.0
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	100.0
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	100.0
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	100.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	100.0
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	100.0
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	100.0
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	100.0
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	100.0
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	100.0
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	100.0
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	100.0
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	100.0
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	100.0
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	100.0
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	100.0
3uqc_A	286	Probable conserved transmembrane protein; structur	100.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.97
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.87
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.64
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.34
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.12
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.54
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.28
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.26
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.04
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	98.0
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.47
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.17
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.11
3ats_A	357	Putative uncharacterized protein; hypothetical pro	96.36
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	96.18
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	94.32
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	93.35
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	91.54
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	85.73
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	85.02
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	83.88
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	80.51

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.8e-56  Score=381.27  Aligned_cols=208  Identities=38%  Similarity=0.778  Sum_probs=187.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.+++.+|+|||||+||+|.+++..  ..+++.+++.++.||+.||.|||++||+|||||     
T Consensus       125 l~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~~--~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlK-----  197 (346)
T 4fih_A          125 MRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTH--TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIK-----  197 (346)
T ss_dssp             HHHCCCTTBCCEEEEEEETTEEEEEECCCTTEEHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCcccccCC-----
Confidence            4578999999999999999999999999999999999863  579999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.+||+|||+|+.............||+.|+|||++.+.+|+.
T Consensus       198 ----------------------------p~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~  249 (346)
T 4fih_A          198 ----------------------------SDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGP  249 (346)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCT
T ss_pred             ----------------------------HHHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCHHHHCCCCCCc
Confidence                                        9999999999999999999987765545556678999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++||||+||++|+|++|.+||.+.+.......+....++....+..+++++.+||.+||+.||++|||++|+++||||++
T Consensus       250 ~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~  329 (346)
T 4fih_A          250 EVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAK  329 (346)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGG
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhcC
Confidence            99999999999999999999988877776666655555555556778999999999999999999999999999999997


Q ss_pred             ccC
Q psy3253         241 HDT  243 (251)
Q Consensus       241 ~~~  243 (251)
                      ...
T Consensus       330 ~~~  332 (346)
T 4fih_A          330 AGP  332 (346)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=4.4e-56  Score=373.29  Aligned_cols=208  Identities=27%  Similarity=0.487  Sum_probs=183.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.+++.+|+|||||+||+|.+++. +.+.+++.+++.++.||+.||.|||++||+|||||     
T Consensus        80 l~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~l~-~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlK-----  153 (304)
T 3ubd_A           80 LVEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLS-KEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLK-----  153 (304)
T ss_dssp             CCCCCCTTEECEEEEEEETTEEEEEECCCTTCEEHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCC-----
T ss_pred             HHHCCCCCCCeEEEEEEECCEEEEEEEcCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCC-----
Confidence            678999999999999999999999999999999999997 45689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.+||+|||+|+.............||+.|+|||++.+..++.
T Consensus       154 ----------------------------p~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~  205 (304)
T 3ubd_A          154 ----------------------------PENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQ  205 (304)
T ss_dssp             ----------------------------GGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCT
T ss_pred             ----------------------------HHHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHHHhccCCCCC
Confidence                                        8999999999999999999986654444555678999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl~h  235 (251)
                      ++||||+||++|+|++|.+||.+.+.......+....   ...+..+|+++.+||.+||+.||++|||     ++|+++|
T Consensus       206 ~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~---~~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~H  282 (304)
T 3ubd_A          206 SADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAK---LGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRH  282 (304)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC---CCCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTS
T ss_pred             CCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCC---CCCCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcC
Confidence            9999999999999999999998887777666555442   2346678999999999999999999998     5899999


Q ss_pred             hhhhhccCCC
Q psy3253         236 EFIQRHDTDP  245 (251)
Q Consensus       236 p~~~~~~~~~  245 (251)
                      |||+..+|+.
T Consensus       283 p~f~~idw~~  292 (304)
T 3ubd_A          283 SFFSTIDWNK  292 (304)
T ss_dssp             GGGTTCCHHH
T ss_pred             ccccCCCHHH
Confidence            9999988853

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=5.4e-56  Score=373.11  Aligned_cols=208  Identities=27%  Similarity=0.485  Sum_probs=185.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|++++.+|+|||||+||+|.++++ +.+.+++.+++.++.||+.||.|||++||+|||||     
T Consensus        86 l~~l~HpnIv~l~~~~~~~~~~yivmEy~~gG~L~~~i~-~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlK-----  159 (311)
T 4aw0_A           86 MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIR-KIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLK-----  159 (311)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----
T ss_pred             HHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCC-----
Confidence            578999999999999999999999999999999999997 45789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc--cccccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT--MAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.+||+|||+|+.....  ........||+.|+|||++.+..+
T Consensus       160 ----------------------------PeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y  211 (311)
T 4aw0_A          160 ----------------------------PENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSA  211 (311)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCB
T ss_pred             ----------------------------HHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCC
Confidence                                        88999999999999999999876432  223455679999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHH------H
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE------M  232 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e------v  232 (251)
                      +.++|+||+||++|+|++|.+||.+.+.......+....   +..+..+++++.+||.+||+.||++|||++|      +
T Consensus       212 ~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~---~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i  288 (311)
T 4aw0_A          212 CKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLE---YDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPL  288 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC---CCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCC---CCCCcccCHHHHHHHHHHccCCHhHCcChHHHcCCHHH
Confidence            999999999999999999999998877766665555442   2346678999999999999999999999998      5


Q ss_pred             hcChhhhhccCCC
Q psy3253         233 LNHEFIQRHDTDP  245 (251)
Q Consensus       233 l~hp~~~~~~~~~  245 (251)
                      ++||||+..+|+.
T Consensus       289 ~~Hp~F~~idw~~  301 (311)
T 4aw0_A          289 KAHPFFESVTWEN  301 (311)
T ss_dssp             HTSGGGTTCCCTT
T ss_pred             HCCCCcCCCCHHH
Confidence            8999999999974

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=2.9e-55  Score=382.41  Aligned_cols=208  Identities=38%  Similarity=0.782  Sum_probs=188.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.+++.+|+|||||+||+|.++++  ...+++.+++.++.||+.||.|||++||+|||||     
T Consensus       202 l~~l~HpnIV~l~~~~~~~~~~~iVmEy~~gG~L~~~i~--~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiK-----  274 (423)
T 4fie_A          202 MRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVT--HTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIK-----  274 (423)
T ss_dssp             HHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHH--HSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HHhCCCCCCCceEEEEEECCEEEEEEeCCCCCcHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCC-----
Confidence            457899999999999999999999999999999999986  3569999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.+||+|||+|+.............||+.|+|||++.+..|+.
T Consensus       275 ----------------------------p~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~  326 (423)
T 4fie_A          275 ----------------------------SDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGP  326 (423)
T ss_dssp             ----------------------------TTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBCT
T ss_pred             ----------------------------HHHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCHHHHCCCCCCc
Confidence                                        8899999999999999999987765545556678999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++|||||||++|+|++|.+||.+.+.......+.....+....+..+++++.+||.+||..||++|||++|+|+||||++
T Consensus       327 ~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~  406 (423)
T 4fie_A          327 EVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAK  406 (423)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGG
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHHhcC
Confidence            99999999999999999999988877777766665555566667789999999999999999999999999999999997


Q ss_pred             ccC
Q psy3253         241 HDT  243 (251)
Q Consensus       241 ~~~  243 (251)
                      ...
T Consensus       407 ~~~  409 (423)
T 4fie_A          407 AGP  409 (423)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            643

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=3.4e-55  Score=373.86  Aligned_cols=206  Identities=28%  Similarity=0.539  Sum_probs=182.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++|||||+++++|.+++.+|+|||||+||+|.+++...+ ..+++.+++.++.||+.||.|||++||+|||||    
T Consensus        77 l~~l~HpnIV~~~~~~~~~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlK----  152 (350)
T 4b9d_A           77 LANMKHPNIVQYRESFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIK----  152 (350)
T ss_dssp             HHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCC----
T ss_pred             HHHCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCC----
Confidence            457899999999999999999999999999999999997443 467999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.+||+|||+|+.............||+.|+|||++.+..|+
T Consensus       153 -----------------------------p~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~  203 (350)
T 4b9d_A          153 -----------------------------SQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYN  203 (350)
T ss_dssp             -----------------------------GGGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCC
T ss_pred             -----------------------------HHHEEECCCCCEEEcccccceeecCCcccccccCCCccccCHHHHCCCCCC
Confidence                                         899999999999999999998765443334456799999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ  239 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~  239 (251)
                      .++||||+||++|+|++|++||.+.+.......+.....+.  .+..+++++.+||.+||+.||++|||++|+|+||||+
T Consensus       204 ~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~--~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~  281 (350)
T 4b9d_A          204 NKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPP--VSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIA  281 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCC--CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCC--CCccCCHHHHHHHHHHccCChhHCcCHHHHhcCHHhh
Confidence            99999999999999999999998887777666655543332  3567899999999999999999999999999999997


Q ss_pred             hc
Q psy3253         240 RH  241 (251)
Q Consensus       240 ~~  241 (251)
                      +.
T Consensus       282 ~~  283 (350)
T 4b9d_A          282 KR  283 (350)
T ss_dssp             TT
T ss_pred             cC
Confidence            53

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=5.1e-54  Score=358.93  Aligned_cols=202  Identities=30%  Similarity=0.539  Sum_probs=169.6

Q ss_pred             CCCCCCCccceeeeeEee----CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR--KIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~----~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~--iiH~di   74 (251)
                      |++++|||||+++++|.+    +..+|+|||||+||+|.++++ +...+++..++.++.||+.||.|||++|  |+||||
T Consensus        79 l~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~-~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDl  157 (290)
T 3fpq_A           79 LKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK-RFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDL  157 (290)
T ss_dssp             HHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCC
T ss_pred             HHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEeccc
Confidence            468999999999999975    346899999999999999997 4578999999999999999999999998  999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecC-CCCCeEecccccccccCccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~-~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  153 (251)
                      |                                 |+||+++ .++.+||+|||+|+.....  ......||+.|+|||++
T Consensus       158 K---------------------------------p~NILl~~~~g~vKl~DFGla~~~~~~--~~~~~~GTp~YmAPE~~  202 (290)
T 3fpq_A          158 K---------------------------------CDNIFITGPTGSVKIGDLGLATLKRAS--FAKAVIGTPEFMAPEMY  202 (290)
T ss_dssp             C---------------------------------GGGEEESSTTSCEEECCTTGGGGCCTT--SBEESCSSCCCCCGGGG
T ss_pred             C---------------------------------hhheeEECCCCCEEEEeCcCCEeCCCC--ccCCcccCccccCHHHc
Confidence            8                                 8899987 4789999999999754322  33456799999999998


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhh-hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         154 QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAI-FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       154 ~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      .+ +++.++|||||||++|+|+||++||.+....... ..+..... ....+...++++.+||.+||+.||++|||++|+
T Consensus       203 ~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~  280 (290)
T 3fpq_A          203 EE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVK-PASFDKVAIPEVKEIIEGCIRQNKDERYSIKDL  280 (290)
T ss_dssp             GT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCC-CGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             CC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCC-CCCCCccCCHHHHHHHHHHccCChhHCcCHHHH
Confidence            65 6999999999999999999999999765544333 33333322 222355678999999999999999999999999


Q ss_pred             hcChhhhh
Q psy3253         233 LNHEFIQR  240 (251)
Q Consensus       233 l~hp~~~~  240 (251)
                      ++||||++
T Consensus       281 l~Hp~~~~  288 (290)
T 3fpq_A          281 LNHAFFQE  288 (290)
T ss_dssp             HTSGGGC-
T ss_pred             hcCccccC
Confidence            99999985

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=5.5e-54  Score=364.82  Aligned_cols=210  Identities=32%  Similarity=0.455  Sum_probs=179.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.+++.+|+|||||+||+|.++++ ..+.+++..++.++.||+.||.|||++||+|||||     
T Consensus       104 l~~l~HpnIV~l~~~~~~~~~~~ivmEy~~gg~L~~~l~-~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlK-----  177 (336)
T 4g3f_A          104 CAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIK-QMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVK-----  177 (336)
T ss_dssp             TTTCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCC-----
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCceecccC-----
Confidence            678999999999999999999999999999999999997 44689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCC-CeEecccccccccCcccc-----cccccccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLADFGVAGQLTDTMA-----KRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~-~~kl~dfg~~~~~~~~~~-----~~~~~~~~~~y~aPE~~~  154 (251)
                                                  |+||+++.++ .+||+|||+|+.......     ......||+.|+|||++.
T Consensus       178 ----------------------------p~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~  229 (336)
T 4g3f_A          178 ----------------------------ADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVM  229 (336)
T ss_dssp             ----------------------------GGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHT
T ss_pred             ----------------------------HHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHC
Confidence                                        8899998887 599999999986543211     123346999999999999


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH--
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM--  232 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev--  232 (251)
                      +.+++.++||||+||++|+|++|.+||.+.+.......+.....+....+..+++++.++|.+||+.||++|||++|+  
T Consensus       230 ~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~  309 (336)
T 4g3f_A          230 GKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRR  309 (336)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHH
Confidence            999999999999999999999999999877666655555444433334567889999999999999999999999997  


Q ss_pred             -----------hcChhhhhccCC
Q psy3253         233 -----------LNHEFIQRHDTD  244 (251)
Q Consensus       233 -----------l~hp~~~~~~~~  244 (251)
                                 ++|||+.+...+
T Consensus       310 ~l~~~l~~~~~l~hPw~~~~~~P  332 (336)
T 4g3f_A          310 KVGKALQEVGGLKSPWKGEYKEP  332 (336)
T ss_dssp             HHHHHHHHTTSSCSCSSSSCCCC
T ss_pred             HHHHHHhhhhhccCCCcCCCCCC
Confidence                       679999876543

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=1e-53  Score=354.39  Aligned_cols=201  Identities=26%  Similarity=0.464  Sum_probs=167.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.+++.+|+||||| +|+|.+++. ..+.+++.+++.++.||+.||+|||++||+|||||     
T Consensus        67 l~~l~HpnIv~~~~~~~~~~~~~ivmEy~-~g~L~~~l~-~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiK-----  139 (275)
T 3hyh_A           67 LRLLRHPHIIKLYDVIKSKDEIIMVIEYA-GNELFDYIV-QRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLK-----  139 (275)
T ss_dssp             HHHCCCTTBCCEEEEEECSSEEEEEEECC-CEEHHHHHH-HSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----
T ss_pred             HHHCCCCCCCeEEEEEEECCEEEEEEeCC-CCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCC-----
Confidence            35789999999999999999999999999 679999997 56789999999999999999999999999999998     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC-C
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY-D  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~  159 (251)
                                                  |+||+++.++.+||+|||+|+..... .......||+.|+|||++.+..+ +
T Consensus       140 ----------------------------P~NILl~~~~~vkl~DFGla~~~~~~-~~~~~~~GT~~Y~APE~~~~~~y~~  190 (275)
T 3hyh_A          140 ----------------------------PENLLLDEHLNVKIADFGLSNIMTDG-NFLKTSCGSPNYAAPEVISGKLYAG  190 (275)
T ss_dssp             ----------------------------TTTEEECTTCCEEECCSSCC----------------CTTSCHHHHSSSSCCC
T ss_pred             ----------------------------hHHeEECCCCCEEEeecCCCeecCCC-CccCCeeECcccCChhhhcCCCCCC
Confidence                                        88999999999999999999765433 23345679999999999988876 5


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ  239 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~  239 (251)
                      .++||||+||++|+|++|++||.+.+.......+....   ...+..+++++.+||.+||+.||++|||++|+++||||+
T Consensus       191 ~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~---~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~hpw~k  267 (275)
T 3hyh_A          191 PEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGV---YTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFK  267 (275)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC---CCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHCHHHH
T ss_pred             ChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCC---CCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHcCcccc
Confidence            79999999999999999999998876665555444432   233567899999999999999999999999999999997


Q ss_pred             h
Q psy3253         240 R  240 (251)
Q Consensus       240 ~  240 (251)
                      .
T Consensus       268 ~  268 (275)
T 3hyh_A          268 V  268 (275)
T ss_dssp             T
T ss_pred             c
Confidence            4

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=3.9e-51  Score=343.37  Aligned_cols=205  Identities=23%  Similarity=0.413  Sum_probs=178.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC------------CCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK------------KTLSEDEIATILCDTLKGLEYLHLRR   68 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~------------~~l~~~~~~~~~~~i~~~l~~LH~~~   68 (251)
                      |++++|||||+++++|.+++.+|+|||||++|+|.++++..+            ..+++.+++.++.||+.||.|||+++
T Consensus        69 l~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~  148 (299)
T 4asz_A           69 LTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH  148 (299)
T ss_dssp             HTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhCCCCCCccEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999999999999997432            46999999999999999999999999


Q ss_pred             ccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccc
Q psy3253          69 KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPF  146 (251)
Q Consensus        69 iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~  146 (251)
                      |+|||||                                 |+||+++.++.+||+|||+|+.......  ......||+.
T Consensus       149 iiHRDlK---------------------------------p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~  195 (299)
T 4asz_A          149 FVHRDLA---------------------------------TRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIR  195 (299)
T ss_dssp             CCCSCCS---------------------------------GGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGG
T ss_pred             cccCccC---------------------------------HhhEEECCCCcEEECCcccceecCCCCceeecCceecChh
Confidence            9999988                                 8999999999999999999976543221  2233468999


Q ss_pred             cccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCc
Q psy3253         147 WMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEE  225 (251)
Q Consensus       147 y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  225 (251)
                      |+|||++.+..++.++|||||||++|||+| |+.||.+.+.......+..+..+  ..|..+|+++.+|+.+||+.||++
T Consensus       196 ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~~--~~p~~~~~~~~~li~~cl~~dP~~  273 (299)
T 4asz_A          196 WMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVL--QRPRTCPQEVYELMLGCWQREPHM  273 (299)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCCC--CCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             hcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCC--CCCccchHHHHHHHHHHcCCChhH
Confidence            999999999999999999999999999998 89999888777766665554332  346778999999999999999999


Q ss_pred             cCCHHHHhcChhhhhcc
Q psy3253         226 RATASEMLNHEFIQRHD  242 (251)
Q Consensus       226 Rps~~evl~hp~~~~~~  242 (251)
                      |||++|++  +|+++..
T Consensus       274 RPs~~~i~--~~L~~~~  288 (299)
T 4asz_A          274 RKNIKGIH--TLLQNLA  288 (299)
T ss_dssp             SCCHHHHH--HHHHHHH
T ss_pred             CcCHHHHH--HHHHHHH
Confidence            99999994  7887654

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=7.4e-50  Score=336.12  Aligned_cols=202  Identities=26%  Similarity=0.450  Sum_probs=164.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++.+ +.+|+|||||++|+|.++++.....+++.++..++.||+.||.|||++||+|||||     
T Consensus        86 l~~l~HpNIV~l~g~~~~-~~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlK-----  159 (307)
T 3omv_A           86 LRKTRHVNILLFMGYMTK-DNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMK-----  159 (307)
T ss_dssp             HTTCCCTTBCCEEEEECS-SSCEEEEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCC-----
T ss_pred             HHhCCCCCEeeEEEEEEC-CeEEEEEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccC-----
Confidence            578999999999998854 56899999999999999998666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--cccccccccccccccccccc---
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPEVIQE---  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~---  155 (251)
                                                  |+||+++.++.+||+|||+|+......  .......||+.|+|||++.+   
T Consensus       160 ----------------------------p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~  211 (307)
T 3omv_A          160 ----------------------------SNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDN  211 (307)
T ss_dssp             ----------------------------SSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSS
T ss_pred             ----------------------------HHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCC
Confidence                                        889999999999999999997654321  22344578999999999953   


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhh-cCCC--CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM-IPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      .+++.++|||||||++|+|+||+.||.+.+....... +...  .+.....+..+++++.+|+.+||+.||++|||++||
T Consensus       212 ~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei  291 (307)
T 3omv_A          212 NPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKVKEERPLFPQI  291 (307)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHH
T ss_pred             CCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHHHcCCCHhHCcCHHHH
Confidence            4589999999999999999999999987665443322 2221  111123456789999999999999999999999998


Q ss_pred             hcCh
Q psy3253         233 LNHE  236 (251)
Q Consensus       233 l~hp  236 (251)
                      +++-
T Consensus       292 ~~~L  295 (307)
T 3omv_A          292 LSSI  295 (307)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=2.6e-50  Score=366.61  Aligned_cols=205  Identities=26%  Similarity=0.463  Sum_probs=177.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++|||||+++++|++...+|+|||||.||+|.+++. +.+.+++..++.++.||+.||.|||++||||||||      
T Consensus       247 ~~~~HP~IV~l~~~f~~~~~lylVmEy~~GGdL~~~l~-~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLK------  319 (689)
T 3v5w_A          247 STGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS-QHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLK------  319 (689)
T ss_dssp             SSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCS------
T ss_pred             hhCCCCCEeEEEEEEEECCEEEEEEecCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCc------
Confidence            56799999999999999999999999999999999997 45789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~  160 (251)
                                                 |+||+++.+|++||+|||+|+.....  ......||+.|+|||++.+ ..|+.
T Consensus       320 ---------------------------PeNILld~~G~vKL~DFGlA~~~~~~--~~~t~~GTp~YmAPEvl~~~~~y~~  370 (689)
T 3v5w_A          320 ---------------------------PANILLDEHGHVRISDLGLACDFSKK--KPHASVGTHGYMAPEVLQKGVAYDS  370 (689)
T ss_dssp             ---------------------------GGGEEECTTSCEEECCCTTCEECSSC--CCCSCCSCGGGCCHHHHSTTCCCCT
T ss_pred             ---------------------------hHHeEEeCCCCEEecccceeeecCCC--CCCCccCCcCccCHHHHhCCCCCCc
Confidence                                       99999999999999999999876543  3345689999999999964 57999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcch---hhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHH
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMR---AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEM  232 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~ev  232 (251)
                      ++|+||+||++|+|++|.+||.+.+...   ....+...   ....+..+++++.+||.+||+.||++|++     ++|+
T Consensus       371 ~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~---~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei  447 (689)
T 3v5w_A          371 SADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTM---AVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEV  447 (689)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHC---CCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCC---CCCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHH
Confidence            9999999999999999999996543322   12222222   22346778999999999999999999998     7999


Q ss_pred             hcChhhhhccCCC
Q psy3253         233 LNHEFIQRHDTDP  245 (251)
Q Consensus       233 l~hp~~~~~~~~~  245 (251)
                      ++||||+..+|+.
T Consensus       448 ~~HpfF~~idW~~  460 (689)
T 3v5w_A          448 KESPFFRSLDWQM  460 (689)
T ss_dssp             TTSGGGTTCCHHH
T ss_pred             hcCccccCCCHHH
Confidence            9999999999863

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=4.3e-50  Score=338.35  Aligned_cols=200  Identities=22%  Similarity=0.400  Sum_probs=174.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHH
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLH   65 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH   65 (251)
                      |++++|||||+++|++.++..+++|||||++|+|.+++..+.               ..+++.++..++.||+.||.|||
T Consensus        83 l~~l~HpNIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH  162 (308)
T 4gt4_A           83 RARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS  162 (308)
T ss_dssp             HHHCCCTTBCCEEEEECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCCCcceEEEECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999996432               35899999999999999999999


Q ss_pred             hCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--cccccccc
Q psy3253          66 LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIG  143 (251)
Q Consensus        66 ~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~  143 (251)
                      +++|+|||||                                 |+||+++.++.+||+|||+++......  .......|
T Consensus       163 ~~~iiHRDLK---------------------------------~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~g  209 (308)
T 4gt4_A          163 SHHVVHKDLA---------------------------------TRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLL  209 (308)
T ss_dssp             HTTCCCSCCS---------------------------------GGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCB
T ss_pred             hCCCCCCCcc---------------------------------ccceEECCCCCEEECCcccceeccCCCceeEeccccc
Confidence            9999999988                                 999999999999999999998654322  12334568


Q ss_pred             ccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcC
Q psy3253         144 TPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN  222 (251)
Q Consensus       144 ~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  222 (251)
                      |+.|+|||++.+..++.++|||||||++|||+| |..||.+.+.......+..+..+  +.+..+++++.+|+.+||+.|
T Consensus       210 t~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~~~~--~~p~~~~~~~~~li~~C~~~d  287 (308)
T 4gt4_A          210 PIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVL--PCPDDCPAWVYALMIECWNEF  287 (308)
T ss_dssp             CGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSS
T ss_pred             CCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--CCcccchHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999998 89999888877777666554332  346789999999999999999


Q ss_pred             cCccCCHHHHhcC
Q psy3253         223 PEERATASEMLNH  235 (251)
Q Consensus       223 p~~Rps~~evl~h  235 (251)
                      |++|||++||+++
T Consensus       288 P~~RPs~~ei~~~  300 (308)
T 4gt4_A          288 PSRRPRFKDIHSR  300 (308)
T ss_dssp             GGGSCCHHHHHHH
T ss_pred             hhHCcCHHHHHHH
Confidence            9999999999864

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=5.5e-50  Score=340.61  Aligned_cols=200  Identities=22%  Similarity=0.418  Sum_probs=167.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh--------------CCCCCHHHHHHHHHHHHHHHHHHHh
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR--------------KKTLSEDEIATILCDTLKGLEYLHL   66 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~--------------~~~l~~~~~~~~~~~i~~~l~~LH~   66 (251)
                      |++++|||||+++++|.++..+|+|||||++|+|.++++..              ...+++.+++.++.||+.||.|||+
T Consensus        97 l~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~  176 (329)
T 4aoj_A           97 LTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG  176 (329)
T ss_dssp             HTTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999999743              2468999999999999999999999


Q ss_pred             CCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccc
Q psy3253          67 RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGT  144 (251)
Q Consensus        67 ~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~  144 (251)
                      ++|+|||||                                 |+||+++.++.+||+|||+++.......  ......||
T Consensus       177 ~~iiHRDLK---------------------------------p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt  223 (329)
T 4aoj_A          177 LHFVHRDLA---------------------------------TRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLP  223 (329)
T ss_dssp             TTCCCSCCC---------------------------------GGGEEEETTTEEEECCCC----------------CCCC
T ss_pred             CCeeccccc---------------------------------HhhEEECCCCcEEEcccccceeccCCCcceecCccccc
Confidence            999999988                                 9999999999999999999986543221  22345689


Q ss_pred             cccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCc
Q psy3253         145 PFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP  223 (251)
Q Consensus       145 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  223 (251)
                      +.|+|||++.+..++.++|||||||++|||+| |+.||.+.+.......+..+..  ...+..+++++.+|+.+||+.||
T Consensus       224 ~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g~~--~~~p~~~~~~~~~li~~cl~~dP  301 (329)
T 4aoj_A          224 IRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRE--LERPRACPPEVYAIMRGCWQREP  301 (329)
T ss_dssp             GGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHTCC--CCCCTTCCHHHHHHHHHHCCSST
T ss_pred             ccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCC--CCCcccccHHHHHHHHHHcCcCh
Confidence            99999999999999999999999999999999 8999988877766665544432  33467899999999999999999


Q ss_pred             CccCCHHHHhcC
Q psy3253         224 EERATASEMLNH  235 (251)
Q Consensus       224 ~~Rps~~evl~h  235 (251)
                      ++|||++||+++
T Consensus       302 ~~RPs~~ei~~~  313 (329)
T 4aoj_A          302 QQRHSIKDVHAR  313 (329)
T ss_dssp             TTSCCHHHHHHH
T ss_pred             hHCcCHHHHHHH
Confidence            999999999854

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=4.4e-50  Score=337.21  Aligned_cols=207  Identities=23%  Similarity=0.410  Sum_probs=157.1

Q ss_pred             CCCCCCCccceeeeeEeeCC------------eEEEEEEccCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHh
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT------------DLWIVMEYCGAGSVSDIMRLRK--KTLSEDEIATILCDTLKGLEYLHL   66 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~------------~~~lv~e~~~~gsL~~~~~~~~--~~l~~~~~~~~~~~i~~~l~~LH~   66 (251)
                      |++++|||||+++++|.+.+            ++|+|||||++|+|.+++..+.  ....+..++.++.||+.||.|||+
T Consensus        57 l~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~  136 (299)
T 4g31_A           57 LAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHS  136 (299)
T ss_dssp             HTTCCCTTBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999997543            4799999999999999997332  234567789999999999999999


Q ss_pred             CCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc----------
Q psy3253          67 RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA----------  136 (251)
Q Consensus        67 ~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~----------  136 (251)
                      +||+|||||                                 |+||+++.++.+||+|||+|+.......          
T Consensus       137 ~~IiHRDlK---------------------------------p~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~  183 (299)
T 4g31_A          137 KGLMHRDLK---------------------------------PSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPA  183 (299)
T ss_dssp             TTCCCCCCC---------------------------------GGGEEECTTCCEEECCCCCC------------------
T ss_pred             CcCccccCc---------------------------------HHHeEECCCCcEEEccCccceecCCCcccccccccccc
Confidence            999999988                                 8899999999999999999986543211          


Q ss_pred             --cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhcCCCCCCCCCCCCCCCHHHHH
Q psy3253         137 --KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFMIPTKPPPSFREPDVWTPEFID  213 (251)
Q Consensus       137 --~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (251)
                        ......||+.|+|||++.+.+++.++||||+||++|+|++   ||.+.... .....+.....+.  .+...++...+
T Consensus       184 ~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~  258 (299)
T 4g31_A          184 YARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTLTDVRNLKFPP--LFTQKYPCEYV  258 (299)
T ss_dssp             --------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHHTTCCCH--HHHHHCHHHHH
T ss_pred             ccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHHHHHHHHhcCCCCC--CCcccCHHHHH
Confidence              1233469999999999999999999999999999999996   77543221 2222222221111  12334677889


Q ss_pred             HHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         214 FVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       214 li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      ||.+||+.||++|||++|+++||||++.+|+.
T Consensus       259 li~~~L~~dP~~Rps~~eil~h~~~~~~~~p~  290 (299)
T 4g31_A          259 MVQDMLSPSPMERPEAINIIENAVFEDLDFPG  290 (299)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHTSGGGCCC----
T ss_pred             HHHHHcCCChhHCcCHHHHhcCHhhCCCCCCC
Confidence            99999999999999999999999999998865

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=9.9e-49  Score=337.13  Aligned_cols=201  Identities=29%  Similarity=0.396  Sum_probs=160.3

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +|||||+++++|.+++++|+|||||+||+|.++++    .+++.+++.++.||+.||+|||++||+|||||         
T Consensus        78 ~h~nIv~l~~~~~~~~~~~lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~ylH~~gIiHRDiK---------  144 (361)
T 4f9c_A           78 GQDNVMGVKYCFRKNDHVVIAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRIHQFGIVHRDVK---------  144 (361)
T ss_dssp             SBTTBCCCSEEEEETTEEEEEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS---------
T ss_pred             CCCCCceEEEEEEECCEEEEEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCC---------
Confidence            79999999999999999999999999999999883    59999999999999999999999999999999         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCC-CCeEecccccccccCcccc---------------------------
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLADFGVAGQLTDTMA---------------------------  136 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~-~~~kl~dfg~~~~~~~~~~---------------------------  136 (251)
                                              |+||+++.+ +.+||+|||+|+.......                           
T Consensus       145 ------------------------PeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (361)
T 4f9c_A          145 ------------------------PSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRR  200 (361)
T ss_dssp             ------------------------GGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC---------------------
T ss_pred             ------------------------HHHeEEeCCCCeEEECcCCCCcccCCcccccccccccccccccccccccccccccc
Confidence                                    888888766 7899999999975432211                           


Q ss_pred             -cccccccccccccccccccC-CCCcchhHHHHHHHHHHHHhCCCCCCCCC-cchhhhhc--------------------
Q psy3253         137 -KRNTVIGTPFWMAPEVIQEI-GYDCVADMWSLGITALEMAEGKPPYGDIH-PMRAIFMI--------------------  193 (251)
Q Consensus       137 -~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~-~~~~~~~~--------------------  193 (251)
                       ......||+.|+|||++.+. .++.++||||+||++|+|++|+.||.... .......+                    
T Consensus       201 ~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~  280 (361)
T 4f9c_A          201 QQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSI  280 (361)
T ss_dssp             -----CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEE
T ss_pred             ccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccc
Confidence             11234689999999999775 48899999999999999999999995432 21111100                    


Q ss_pred             ------------------CC-------------CCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         194 ------------------PT-------------KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       194 ------------------~~-------------~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                                        ..             ........+..+++++.|||.+||++||++|+|++|+|+||||++.+
T Consensus       281 ~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~ta~eaL~Hp~f~~i~  360 (361)
T 4f9c_A          281 LCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALLHPFFKDMS  360 (361)
T ss_dssp             EESSCCCCCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGTTC-
T ss_pred             cccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCCC
Confidence                              00             00011122456789999999999999999999999999999998754

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=3.8e-49  Score=358.25  Aligned_cols=211  Identities=22%  Similarity=0.376  Sum_probs=183.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.++..+|+|||||+||+|.+++......+++.+++.++.||+.||.|||++||+|||||     
T Consensus       208 l~~l~hpnIv~l~~~~~~~~~~~iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlK-----  282 (573)
T 3uto_A          208 MSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLK-----  282 (573)
T ss_dssp             HHHTCCTTBCCEEEEEECSSEEEEEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----
T ss_pred             HHhCCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCC-----
Confidence            457899999999999999999999999999999999997556789999999999999999999999999999998     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCC--CCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT--EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.  .+.+||+|||+++..... .......||+.|+|||++.+.++
T Consensus       283 ----------------------------p~Nill~~~~~~~vKl~DFG~a~~~~~~-~~~~~~~GT~~y~APEv~~~~~y  333 (573)
T 3uto_A          283 ----------------------------PENIMFTTKRSNELKLIDFGLTAHLDPK-QSVKVTTGTAEFAAPEVAEGKPV  333 (573)
T ss_dssp             ----------------------------GGGEEESSSSCCCEEECCCSSCEECCTT-SEEEEECSSGGGCCHHHHTTCCB
T ss_pred             ----------------------------hhhccccCCCCCCEEEeeccceeEccCC-CceeeeEECccccCHHHhCCCCC
Confidence                                        77888764  378999999999876543 22334578999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++||||+||++|+|++|.+||.+.+.......+.... ......+..+++++.+||.+||+.||++|||++|+|+|||
T Consensus       334 ~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~Hpw  413 (573)
T 3uto_A          334 GYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPW  413 (573)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTT
T ss_pred             CcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcCcC
Confidence            999999999999999999999998887776665554432 2222334678999999999999999999999999999999


Q ss_pred             hhhccCCC
Q psy3253         238 IQRHDTDP  245 (251)
Q Consensus       238 ~~~~~~~~  245 (251)
                      |+...+..
T Consensus       414 ~~~~~~~~  421 (573)
T 3uto_A          414 LTPGNAPG  421 (573)
T ss_dssp             TSCCCCTT
T ss_pred             cCCCCCCC
Confidence            99887764

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.2e-49  Score=342.54  Aligned_cols=208  Identities=22%  Similarity=0.397  Sum_probs=169.5

Q ss_pred             CCCCCCCccceeeeeEee------CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK------NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~------~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |++++|||||++++++..      ..++|+|||||+ |+|.+++. ..+.+++..++.++.||+.||.|||++||+||||
T Consensus       107 l~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~-g~L~~~i~-~~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDl  184 (398)
T 4b99_A          107 LKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME-SDLHQIIH-SSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDL  184 (398)
T ss_dssp             HHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCS-EEHHHHHT-SSSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCC
T ss_pred             HHhcCCCCcceEeeeeecccccccCCEEEEEEeCCC-CCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCc
Confidence            457899999999999864      357999999995 68999986 5678999999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc----cccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT----MAKRNTVIGTPFWMAP  150 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~~~y~aP  150 (251)
                      |                                 |+||+++.++.+||+|||+|+.....    ........||+.|+||
T Consensus       185 K---------------------------------P~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~AP  231 (398)
T 4b99_A          185 K---------------------------------PSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAP  231 (398)
T ss_dssp             C---------------------------------GGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCH
T ss_pred             C---------------------------------ccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCH
Confidence            8                                 89999999999999999999865432    1223456799999999


Q ss_pred             cccccC-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CCC--------------------CCCC----
Q psy3253         151 EVIQEI-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KPP--------------------PSFR----  202 (251)
Q Consensus       151 E~~~~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~~--------------------~~~~----  202 (251)
                      |++.+. .++.++||||+||++|+|++|.+||.+.+.......+..   ..+                    ....    
T Consensus       232 Ev~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (398)
T 4b99_A          232 ELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWE  311 (398)
T ss_dssp             HHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHH
T ss_pred             HHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHH
Confidence            998775 468999999999999999999999987665444332211   000                    0000    


Q ss_pred             -CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         203 -EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       203 -~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                       ....+++++.+||.+||.+||++|||++|+|+||||++...
T Consensus       312 ~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~  353 (398)
T 4b99_A          312 TVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHD  353 (398)
T ss_dssp             HHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTTCC
T ss_pred             HhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCHhhCcCCC
Confidence             02346899999999999999999999999999999997654

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=3.1e-48  Score=332.56  Aligned_cols=203  Identities=30%  Similarity=0.513  Sum_probs=169.2

Q ss_pred             CCCC-CCccceeeeeEee-CCeEEEEEEccCCCCHHHHHHHh---------------CCCCCHHHHHHHHHHHHHHHHHH
Q psy3253           2 QQCD-SPYVVKYYGSYFK-NTDLWIVMEYCGAGSVSDIMRLR---------------KKTLSEDEIATILCDTLKGLEYL   64 (251)
Q Consensus         2 ~~l~-hpniv~l~~~~~~-~~~~~lv~e~~~~gsL~~~~~~~---------------~~~l~~~~~~~~~~~i~~~l~~L   64 (251)
                      +++. |||||+++++|.+ +..+|+|||||++|+|.++++..               ...+++..++.++.||+.||.||
T Consensus       122 ~~l~hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yL  201 (353)
T 4ase_A          122 IHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFL  201 (353)
T ss_dssp             HHHCCCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCcEEEEEEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhH
Confidence            3454 5999999999976 45789999999999999999743               23489999999999999999999


Q ss_pred             HhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--ccccccc
Q psy3253          65 HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVI  142 (251)
Q Consensus        65 H~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~  142 (251)
                      |+++|||||||                                 |+||+++.++.+||+|||+|+......  .......
T Consensus       202 H~~~iiHRDLK---------------------------------~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~  248 (353)
T 4ase_A          202 ASRKCIHRDLA---------------------------------ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDAR  248 (353)
T ss_dssp             HHTTCCCSCCS---------------------------------GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEE
T ss_pred             hhCCeecCccC---------------------------------ccceeeCCCCCEEECcchhhhhcccCCCceeecccc
Confidence            99999999988                                 899999999999999999998654322  2334456


Q ss_pred             cccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhh-hhcCCCCCCCCCCCCCCCHHHHHHHHHhhh
Q psy3253         143 GTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAI-FMIPTKPPPSFREPDVWTPEFIDFVSRCLV  220 (251)
Q Consensus       143 ~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  220 (251)
                      ||+.|+|||++.+..++.++|||||||++|||+| |..||.+....... ..+..+.  ....+..+++++.++|.+||+
T Consensus       249 gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~~g~--~~~~p~~~~~~~~~li~~c~~  326 (353)
T 4ase_A          249 LPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT--RMRAPDYTTPEMYQTMLDCWH  326 (353)
T ss_dssp             ECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTC--CCCCCTTCCHHHHHHHHHHTC
T ss_pred             ccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCC--CCCCCccCCHHHHHHHHHHcC
Confidence            8999999999999999999999999999999998 99999876544333 2232222  233467789999999999999


Q ss_pred             cCcCccCCHHHHhcC--hhhh
Q psy3253         221 KNPEERATASEMLNH--EFIQ  239 (251)
Q Consensus       221 ~~p~~Rps~~evl~h--p~~~  239 (251)
                      .||++|||++|+++|  .+++
T Consensus       327 ~dP~~RPt~~eil~~L~~llq  347 (353)
T 4ase_A          327 GEPSQRPTFSELVEHLGNLLQ  347 (353)
T ss_dssp             SSGGGSCCHHHHHHHHHHHHH
T ss_pred             cChhHCcCHHHHHHHHHHHHH
Confidence            999999999999988  4544

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=2.5e-46  Score=314.38  Aligned_cols=206  Identities=42%  Similarity=0.836  Sum_probs=181.1

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++..+...|+||||+++|+|.+++..  ..+++..+..++.|++.||.|||++|++|||||      
T Consensus        72 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlk------  143 (297)
T 3fxz_A           72 RENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIK------  143 (297)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS------
T ss_pred             hcCCCCCCCeEeEEEEECCEEEEEEECCCCCCHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCC------
Confidence            468999999999999999999999999999999999973  479999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.+||+|||++..............||+.|+|||++.+..++.+
T Consensus       144 ---------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  196 (297)
T 3fxz_A          144 ---------------------------SDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPK  196 (297)
T ss_dssp             ---------------------------GGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTH
T ss_pred             ---------------------------HHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCCCcH
Confidence                                       88999999999999999999776655445555678999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +||||+||++|+|++|..||.+.+.......+.....+....+..+++.+.++|.+||+.||++|||++|+++||||+..
T Consensus       197 ~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h~~~~~~  276 (297)
T 3fxz_A          197 VDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIA  276 (297)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhccc
Confidence            99999999999999999999877665555444333333444567789999999999999999999999999999999865


Q ss_pred             c
Q psy3253         242 D  242 (251)
Q Consensus       242 ~  242 (251)
                      .
T Consensus       277 ~  277 (297)
T 3fxz_A          277 K  277 (297)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1e-45  Score=316.06  Aligned_cols=207  Identities=29%  Similarity=0.513  Sum_probs=181.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....|+||||+.||+|.+++. ....+++..++.++.||+.||.|||++||+|||||     
T Consensus        59 l~~l~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~-~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk-----  132 (337)
T 1o6l_A           59 LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-RERVFTEERARFYGAEIVSALEYLHSRDVVYRDIK-----  132 (337)
T ss_dssp             HHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHH-HHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-----
T ss_pred             HHhCCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCC-----
Confidence            357899999999999999999999999999999999997 45689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.+||+|||+++.............||+.|+|||++.+..++.
T Consensus       133 ----------------------------p~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  184 (337)
T 1o6l_A          133 ----------------------------LENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGR  184 (337)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCT
T ss_pred             ----------------------------HHHEEECCCCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCCc
Confidence                                        8899999999999999999976443333445567899999999999989999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~h  235 (251)
                      ++|+||+||++|+|++|..||.+.+.......+...   ....+..+++++.++|.+||+.||++||     +++|+++|
T Consensus       185 ~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~---~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h  261 (337)
T 1o6l_A          185 AVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILME---EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             THHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC---CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             hhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcC---CCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcC
Confidence            999999999999999999999877665555444332   2223567899999999999999999999     99999999


Q ss_pred             hhhhhccCC
Q psy3253         236 EFIQRHDTD  244 (251)
Q Consensus       236 p~~~~~~~~  244 (251)
                      |||+..+|+
T Consensus       262 ~~f~~~~~~  270 (337)
T 1o6l_A          262 RFFLSINWQ  270 (337)
T ss_dssp             GGGTTCCHH
T ss_pred             CCcCCCCHH
Confidence            999988775

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1.8e-45  Score=313.50  Aligned_cols=204  Identities=27%  Similarity=0.491  Sum_probs=177.5

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....|+||||+++|+|.+++. ..+.+++..++.++.|++.||+|||++|++|||||      
T Consensus        69 ~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlk------  141 (328)
T 3fe3_A           69 KILNHPNIVKLFEVIETEKTLYLIMEYASGGEVFDYLV-AHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLK------  141 (328)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC------
T ss_pred             HhCCCCCEeeEEEEEEECCEEEEEEECCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCC------
Confidence            46899999999999999999999999999999999997 34679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC-c
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD-C  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-~  160 (251)
                                                 |+||+++.++.+||+|||++...... .......||+.|+|||++.+..++ .
T Consensus       142 ---------------------------p~NIll~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~  193 (328)
T 3fe3_A          142 ---------------------------AENLLLDADMNIKIADFGFSNEFTVG-GKLDAFCGAPPYAAPELFQGKKYDGP  193 (328)
T ss_dssp             ---------------------------GGGEEECTTSCEEECSTTCCGGGSSS-CGGGTTSSSGGGCCHHHHHTCCCCSH
T ss_pred             ---------------------------HHHEEEcCCCCEEEeeccCceecCCC-CccccccCCcceeCcccccCCCcCCc
Confidence                                       88999999999999999999765433 233445689999999999887765 7


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++||||+||++|+|++|..||.+.+.......+...   ....+..+++++.+++.+||+.||++|||++|+++||||+.
T Consensus       194 ~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~---~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~  270 (328)
T 3fe3_A          194 EVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRG---KYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINA  270 (328)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC---CCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTCTTTTT
T ss_pred             hhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhC---CCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcCHhhcC
Confidence            899999999999999999999887766655544433   22335668999999999999999999999999999999987


Q ss_pred             ccC
Q psy3253         241 HDT  243 (251)
Q Consensus       241 ~~~  243 (251)
                      ...
T Consensus       271 ~~~  273 (328)
T 3fe3_A          271 GHE  273 (328)
T ss_dssp             TCT
T ss_pred             CCc
Confidence            554

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=317.39  Aligned_cols=204  Identities=26%  Similarity=0.458  Sum_probs=176.0

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||||++++++|.+...+|+||||+.||+|.+++. ....+++..++.++.||+.||.|||++||+|||||         
T Consensus        82 ~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~-~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlk---------  151 (353)
T 3txo_A           82 NHPFLTQLFCCFQTPDRLFFVMEFVNGGDLMFHIQ-KSRRFDEARARFYAAEIISALMFLHDKGIIYRDLK---------  151 (353)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC---------
T ss_pred             CCCceeeEEEEEEeCCEEEEEEeCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCC---------
Confidence            79999999999999999999999999999999997 44679999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhH
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM  164 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  164 (251)
                                              |+||+++.++++||+|||+++.............||+.|+|||++.+..++.++|+
T Consensus       152 ------------------------p~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  207 (353)
T 3txo_A          152 ------------------------LDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDW  207 (353)
T ss_dssp             ------------------------GGGEEECTTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHH
T ss_pred             ------------------------HHHEEECCCCCEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCC
Confidence                                    89999999999999999999765444344555678999999999998889999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH------HHHhcChhh
Q psy3253         165 WSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA------SEMLNHEFI  238 (251)
Q Consensus       165 wslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~------~evl~hp~~  238 (251)
                      ||+||++|+|++|..||.+.+.......+....   ...+..+++++.++|.+||+.||++||++      +|+++||||
T Consensus       208 wslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~---~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~hp~f  284 (353)
T 3txo_A          208 WAMGVLLYEMLCGHAPFEAENEDDLFEAILNDE---VVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFF  284 (353)
T ss_dssp             HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC---CCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTSGGG
T ss_pred             CcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCC---CCCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhCCcc
Confidence            999999999999999998877766665554432   22356689999999999999999999999      899999999


Q ss_pred             hhccCCC
Q psy3253         239 QRHDTDP  245 (251)
Q Consensus       239 ~~~~~~~  245 (251)
                      +..+|+.
T Consensus       285 ~~~~w~~  291 (353)
T 3txo_A          285 KEIDWAQ  291 (353)
T ss_dssp             TTCCHHH
T ss_pred             cCCCHHH
Confidence            9988753

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=3.4e-45  Score=313.75  Aligned_cols=204  Identities=26%  Similarity=0.487  Sum_probs=179.4

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .+||||+++++++.+....|+||||+.||+|.+++.. ...+++..++.++.||+.||.|||++|++|||||        
T Consensus        75 ~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk--------  145 (345)
T 1xjd_A           75 WEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQS-CHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLK--------  145 (345)
T ss_dssp             TTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC--------
T ss_pred             CCCCCCCcEEEEEEeCCEEEEEEeCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCC--------
Confidence            3899999999999999999999999999999999973 4679999999999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchh
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD  163 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  163 (251)
                                               |+||+++.++.+||+|||+++.............||+.|+|||++.+..++.++|
T Consensus       146 -------------------------p~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  200 (345)
T 1xjd_A          146 -------------------------LDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVD  200 (345)
T ss_dssp             -------------------------GGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHH
T ss_pred             -------------------------hhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhh
Confidence                                     8999999999999999999976543333445567899999999999989999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH-HHhcChhhhhcc
Q psy3253         164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS-EMLNHEFIQRHD  242 (251)
Q Consensus       164 vwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~-evl~hp~~~~~~  242 (251)
                      +||+||++|+|++|..||.+.+.......+.....   ..+..+++++.++|.+||..||++||+++ |+++||||+..+
T Consensus       201 iwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~---~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~hp~f~~~~  277 (345)
T 1xjd_A          201 WWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNP---FYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREIN  277 (345)
T ss_dssp             HHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC---CCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTCC
T ss_pred             hHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCC---CCCcccCHHHHHHHHHHhcCCHhHcCCChHHHHcCccccCCC
Confidence            99999999999999999988776665554443321   23566899999999999999999999998 999999999988


Q ss_pred             CC
Q psy3253         243 TD  244 (251)
Q Consensus       243 ~~  244 (251)
                      |+
T Consensus       278 w~  279 (345)
T 1xjd_A          278 WE  279 (345)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=5.2e-45  Score=309.33  Aligned_cols=203  Identities=28%  Similarity=0.540  Sum_probs=179.2

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....|+||||+.||+|.+++. ....+++..++.++.||+.||.|||++|++|||||      
T Consensus        61 ~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~-~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk------  133 (318)
T 1fot_A           61 SIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLR-KSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLK------  133 (318)
T ss_dssp             HSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-HTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC------
T ss_pred             hhCCCCCCceEeEEEEeCCEEEEEEeCCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC------
Confidence            46899999999999999999999999999999999997 45689999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.+||+|||+++....   ......||+.|+|||++.+..++.+
T Consensus       134 ---------------------------p~NIll~~~g~~kL~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~  183 (318)
T 1fot_A          134 ---------------------------PENILLDKNGHIKITDFGFAKYVPD---VTYTLCGTPDYIAPEVVSTKPYNKS  183 (318)
T ss_dssp             ---------------------------GGGEEECTTSCEEECCCSSCEECSS---CBCCCCSCTTTCCHHHHTTCCBCTT
T ss_pred             ---------------------------hheEEEcCCCCEEEeecCcceecCC---ccccccCCccccCHhHhcCCCCCcc
Confidence                                       8899999999999999999976543   2334568999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcCh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNHE  236 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~hp  236 (251)
                      +|+||+||++|+|++|..||.+.+.......+....   ...+..+++++.++|.+||..||++||     +++|+++||
T Consensus       184 ~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~---~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp  260 (318)
T 1fot_A          184 IDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAE---LRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHP  260 (318)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCC---CCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSG
T ss_pred             cchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC---CCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcCc
Confidence            999999999999999999998776665554444332   223567899999999999999999999     999999999


Q ss_pred             hhhhccCC
Q psy3253         237 FIQRHDTD  244 (251)
Q Consensus       237 ~~~~~~~~  244 (251)
                      ||+..+|+
T Consensus       261 ~f~~~~~~  268 (318)
T 1fot_A          261 WFKEVVWE  268 (318)
T ss_dssp             GGSSCCHH
T ss_pred             cccCCCHH
Confidence            99988775

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=1.1e-44  Score=313.63  Aligned_cols=207  Identities=28%  Similarity=0.434  Sum_probs=181.4

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||++++++|.+...+|+||||+.||+|.+++. +...+++..++.++.||+.||.|||++||+|||||      
T Consensus        94 ~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~-~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlk------  166 (373)
T 2r5t_A           94 KNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQ-RERCFLEPRARFYAAEIASALGYLHSLNIVYRDLK------  166 (373)
T ss_dssp             CCCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC------
T ss_pred             HhCCCCCCCCEEEEEEeCCEEEEEEeCCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC------
Confidence            56899999999999999999999999999999999997 45689999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++++||+|||+++.............||+.|+|||++.+..++.+
T Consensus       167 ---------------------------p~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  219 (373)
T 2r5t_A          167 ---------------------------PENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRT  219 (373)
T ss_dssp             ---------------------------GGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTH
T ss_pred             ---------------------------HHHEEECCCCCEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCCch
Confidence                                       89999999999999999999764433334455678999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH----HHHhcChh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA----SEMLNHEF  237 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~----~evl~hp~  237 (251)
                      +|+|||||++|+|++|..||.+.+.......+....   ...+..+++++.++|.+||+.||++||++    +|+++|||
T Consensus       220 ~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i~~h~~  296 (373)
T 2r5t_A          220 VDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKP---LQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVF  296 (373)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSC---CCCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHHHTSGG
T ss_pred             hhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcc---cCCCCCCCHHHHHHHHHHcccCHHhCCCCCCCHHHHhCCcc
Confidence            999999999999999999998877666555444332   22356789999999999999999999986    69999999


Q ss_pred             hhhccCCC
Q psy3253         238 IQRHDTDP  245 (251)
Q Consensus       238 ~~~~~~~~  245 (251)
                      |+..+|+.
T Consensus       297 f~~~~w~~  304 (373)
T 2r5t_A          297 FSLINWDD  304 (373)
T ss_dssp             GTTCCHHH
T ss_pred             ccCCCHHH
Confidence            99988753

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=8.6e-45  Score=312.11  Aligned_cols=207  Identities=24%  Similarity=0.405  Sum_probs=180.2

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +.+ +||||+++++++.+...+|+||||+.||+|.+++.. ...+++..++.++.||+.||.|||++||+|||||     
T Consensus        75 ~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlk-----  148 (353)
T 2i0e_A           75 ALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQ-VGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLK-----  148 (353)
T ss_dssp             TCTTCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-----
T ss_pred             HhcCCCCEEeeEEEEEEcCCEEEEEEeCCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCC-----
Confidence            344 799999999999999999999999999999999974 4679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.+||+|||+++.............||+.|+|||++.+..++.
T Consensus       149 ----------------------------p~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  200 (353)
T 2i0e_A          149 ----------------------------LDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGK  200 (353)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBST
T ss_pred             ----------------------------HHHEEEcCCCcEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcCC
Confidence                                        8999999999999999999976443333445567899999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl~h  235 (251)
                      ++|+|||||++|+|++|..||.+.+.......+....   ...+..+++++.++|.+||..||++||+     ++|+++|
T Consensus       201 ~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~---~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h  277 (353)
T 2i0e_A          201 SVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHN---VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEH  277 (353)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC---CCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTS
T ss_pred             cccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCC---CCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcC
Confidence            9999999999999999999998877666555444332   2235678999999999999999999994     6999999


Q ss_pred             hhhhhccCCC
Q psy3253         236 EFIQRHDTDP  245 (251)
Q Consensus       236 p~~~~~~~~~  245 (251)
                      |||+..+|+.
T Consensus       278 ~~f~~~~w~~  287 (353)
T 2i0e_A          278 AFFRYIDWEK  287 (353)
T ss_dssp             GGGTTCCHHH
T ss_pred             ccccCCCHHH
Confidence            9999988753

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=8e-45  Score=313.21  Aligned_cols=208  Identities=29%  Similarity=0.471  Sum_probs=177.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||++++++|.+....|+||||+.||+|.+++. ....+++..+..++.||+.||.|||++|++|||||     
T Consensus        69 l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~-~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlk-----  142 (361)
T 2yab_A           69 LRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFLA-QKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLK-----  142 (361)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHT-TCSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HHhCCCcCCCcEEEEEEeCCEEEEEEEcCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----
Confidence            467899999999999999999999999999999999996 45789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCC----CeEecccccccccCcccccccccccccccccccccccC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG----HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI  156 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  156 (251)
                                                  |+||+++.++    .+||+|||++...... .......||+.|+|||++.+.
T Consensus       143 ----------------------------p~NIll~~~~~~~~~vkl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~  193 (361)
T 2yab_A          143 ----------------------------PENIMLLDKNIPIPHIKLIDFGLAHEIEDG-VEFKNIFGTPEFVAPEIVNYE  193 (361)
T ss_dssp             ----------------------------GGGEEESCTTSSSCCEEECCCSSCEECCTT-CCCCCCCSCGGGCCHHHHTTC
T ss_pred             ----------------------------HHHEEEeCCCCCccCEEEEecCCceEcCCC-CccccCCCCccEECchHHcCC
Confidence                                        7788887665    7999999999765543 223345689999999999988


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCC-CCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         157 GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPP-SFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       157 ~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++.++||||+||++|+|++|.+||.+.+.......+...... ....+..+++++.+||.+||..||++|||++|+++|
T Consensus       194 ~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~h  273 (361)
T 2yab_A          194 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRH  273 (361)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence            9999999999999999999999999887666655544333211 111235679999999999999999999999999999


Q ss_pred             hhhhhccC
Q psy3253         236 EFIQRHDT  243 (251)
Q Consensus       236 p~~~~~~~  243 (251)
                      |||+..+|
T Consensus       274 p~~~~~~~  281 (361)
T 2yab_A          274 PWITPVDT  281 (361)
T ss_dssp             TTTSCSSH
T ss_pred             cCcCCCch
Confidence            99986654

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=2e-44  Score=318.86  Aligned_cols=207  Identities=29%  Similarity=0.502  Sum_probs=179.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni   79 (251)
                      |++++||||++++++|.+...+|+||||+++|+|.+++. ....+++..++.++.||+.||.|||+ .||+|||||    
T Consensus       202 l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlk----  276 (446)
T 4ejn_A          202 LQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLS-RERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLK----  276 (446)
T ss_dssp             CCCCSCTTSCCEEEEEEETTEEEEEECCCSSCBHHHHHH-HHSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC----
T ss_pred             HHhCCCCeEeeEEEEEeeCCEEEEEEeeCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCC----
Confidence            567899999999999999999999999999999999997 45689999999999999999999998 999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.+||+|||+++.............||+.|+|||++.+..++
T Consensus       277 -----------------------------p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  327 (446)
T 4ejn_A          277 -----------------------------LENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYG  327 (446)
T ss_dssp             -----------------------------GGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCC
T ss_pred             -----------------------------HHHEEECCCCCEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCCC
Confidence                                         889999999999999999997654433344556789999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhc
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~  234 (251)
                      .++|||||||++|+|++|..||.+.+.......+....   ...+..+++++.+||.+||+.||++||     |++|+++
T Consensus       328 ~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~---~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          328 RAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEE---IRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC---CCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCC---CCCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence            99999999999999999999998777665554443332   223567899999999999999999999     9999999


Q ss_pred             ChhhhhccCC
Q psy3253         235 HEFIQRHDTD  244 (251)
Q Consensus       235 hp~~~~~~~~  244 (251)
                      ||||+..+|+
T Consensus       405 hp~f~~~~~~  414 (446)
T 4ejn_A          405 HRFFAGIVWQ  414 (446)
T ss_dssp             SGGGTTCCHH
T ss_pred             CccccCCCHH
Confidence            9999998775

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.4e-44  Score=315.04  Aligned_cols=204  Identities=29%  Similarity=0.515  Sum_probs=174.7

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||||++++++|.+...+|+||||+.||+|.+++. ....+++..++.++.||+.||.|||++||+|||||         
T Consensus       111 ~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~-~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLK---------  180 (396)
T 4dc2_A          111 NHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQ-RQRKLPEEHARFYSAEISLALNYLHERGIIYRDLK---------  180 (396)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC---------
T ss_pred             CCCCcCeeEEEEEECCEEEEEEEcCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCC---------
Confidence            89999999999999999999999999999999997 45689999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhH
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM  164 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  164 (251)
                                              |+||+++.++.+||+|||+++.............||+.|+|||++.+..++.++|+
T Consensus       181 ------------------------p~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~Di  236 (396)
T 4dc2_A          181 ------------------------LDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDW  236 (396)
T ss_dssp             ------------------------GGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHH
T ss_pred             ------------------------HHHEEECCCCCEEEeecceeeecccCCCccccccCCcccCCchhhcCCCCChHHHH
Confidence                                    99999999999999999999764433344556678999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCc---------chhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH------
Q psy3253         165 WSLGITALEMAEGKPPYGDIHP---------MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA------  229 (251)
Q Consensus       165 wslG~~l~~l~~g~~p~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~------  229 (251)
                      ||+||++|+|++|.+||.....         ......+...   ....+..+++++.+||.+||+.||++||++      
T Consensus       237 wslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~---~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~  313 (396)
T 4dc2_A          237 WALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEK---QIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGF  313 (396)
T ss_dssp             HHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHC---CCCCCTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHH
T ss_pred             HHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhcc---ccCCCCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCH
Confidence            9999999999999999953211         1111112221   223456789999999999999999999985      


Q ss_pred             HHHhcChhhhhccCCC
Q psy3253         230 SEMLNHEFIQRHDTDP  245 (251)
Q Consensus       230 ~evl~hp~~~~~~~~~  245 (251)
                      +|+++||||+..+|+.
T Consensus       314 ~ei~~Hpff~~i~w~~  329 (396)
T 4dc2_A          314 ADIQGHPFFRNVDWDM  329 (396)
T ss_dssp             HHHHHSTTTTTCCHHH
T ss_pred             HHHhcCccccCCCHHH
Confidence            8999999999988753

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=2.7e-45  Score=308.94  Aligned_cols=200  Identities=24%  Similarity=0.333  Sum_probs=152.8

Q ss_pred             CCCCCCCccceeeeeEeeCC----eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC--------C
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR--------R   68 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~----~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~--------~   68 (251)
                      |.+++|||||++++++.+++    .+|+|||||++|+|.++++.  ..+++..+..++.|++.||.|||++        +
T Consensus        51 ~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~~--~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~  128 (303)
T 3hmm_A           51 TVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA  128 (303)
T ss_dssp             STTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCC
T ss_pred             HhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Confidence            45789999999999997653    58999999999999999973  5799999999999999999999987        9


Q ss_pred             ccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc----cccccccc
Q psy3253          69 KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA----KRNTVIGT  144 (251)
Q Consensus        69 iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~  144 (251)
                      |+|||||                                 |+||+++.++.+||+|||+++.......    ......||
T Consensus       129 IiHRDlK---------------------------------p~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT  175 (303)
T 3hmm_A          129 IAHRDLK---------------------------------SKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGT  175 (303)
T ss_dssp             EECSCCC---------------------------------GGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CC
T ss_pred             EeeccCC---------------------------------cccEEECCCCCEEEEeCCCCccccCCCCceeeeccccccc
Confidence            9999988                                 9999999999999999999976543211    12335689


Q ss_pred             cccccccccccC------CCCcchhHHHHHHHHHHHHhCCCCCCCCCcch---------------hhhhcC-CCCCCCCC
Q psy3253         145 PFWMAPEVIQEI------GYDCVADMWSLGITALEMAEGKPPYGDIHPMR---------------AIFMIP-TKPPPSFR  202 (251)
Q Consensus       145 ~~y~aPE~~~~~------~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~---------------~~~~~~-~~~~~~~~  202 (251)
                      +.|+|||++.+.      .++.++|||||||++|||+||.+||.......               ....+. ....+..+
T Consensus       176 ~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p  255 (303)
T 3hmm_A          176 KRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIP  255 (303)
T ss_dssp             GGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCC
T ss_pred             ccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCCC
Confidence            999999999653      46779999999999999999988764322111               111111 11111111


Q ss_pred             C---CCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         203 E---PDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       203 ~---~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .   ....+..+.+|+.+||+.||++|||++||++.
T Consensus       256 ~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~  291 (303)
T 3hmm_A          256 NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  291 (303)
T ss_dssp             GGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence            0   11123468899999999999999999999853

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=2.4e-44  Score=305.54  Aligned_cols=207  Identities=41%  Similarity=0.794  Sum_probs=180.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++......++||||+++++|.+++.  ...+++..+..++.|++.||.|||+.|++|||||     
T Consensus        96 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~--~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk-----  168 (321)
T 2c30_A           96 MRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGALTDIVS--QVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIK-----  168 (321)
T ss_dssp             HTTCCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HHhCCCCCcceEEEEEEECCEEEEEEecCCCCCHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----
Confidence            467899999999999999999999999999999999885  4579999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++..............||+.|+|||++.+..++.
T Consensus       169 ----------------------------p~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  220 (321)
T 2c30_A          169 ----------------------------SDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYAT  220 (321)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCT
T ss_pred             ----------------------------HHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCc
Confidence                                        8899999999999999999976654433444567899999999999889999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++||||||+++|+|++|..||...........+.....+.......+++++.+++.+||+.||++|||++|+++||||.+
T Consensus       221 ~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~  300 (321)
T 2c30_A          221 EVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQ  300 (321)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGGG
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhcc
Confidence            99999999999999999999987766555544444443344445567999999999999999999999999999999986


Q ss_pred             cc
Q psy3253         241 HD  242 (251)
Q Consensus       241 ~~  242 (251)
                      ..
T Consensus       301 ~~  302 (321)
T 2c30_A          301 TG  302 (321)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=7e-45  Score=309.53  Aligned_cols=206  Identities=28%  Similarity=0.467  Sum_probs=174.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...|+||||+.+++|.+++. ....+++..+..++.||+.||.|||++|++|||||      
T Consensus        76 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlk------  148 (327)
T 3a62_A           76 EEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLE-REGIFMEDTACFYLAEISMALGHLHQKGIIYRDLK------  148 (327)
T ss_dssp             HHCCCTTBCCEEEEEECSSCEEEEEECCTTEEHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC------
T ss_pred             HhCCCCCccceeEEEEcCCEEEEEEeCCCCCcHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCC------
Confidence            46899999999999999999999999999999999997 44679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.+||+|||+++.............||+.|+|||++.+..++.+
T Consensus       149 ---------------------------p~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  201 (327)
T 3a62_A          149 ---------------------------PENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRA  201 (327)
T ss_dssp             ---------------------------TTTEEECTTSCEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTH
T ss_pred             ---------------------------HHHeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCc
Confidence                                       88999999999999999999754433333444568999999999998889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcCh
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNHE  236 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~hp  236 (251)
                      +|+|||||++|+|++|..||.+.+.......+...   ....+..+++++.++|.+||..||++||     +++|+++||
T Consensus       202 ~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~---~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp  278 (327)
T 3a62_A          202 VDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKC---KLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHP  278 (327)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHT---CCCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSG
T ss_pred             ccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhC---CCCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCC
Confidence            99999999999999999999877665554444332   1223566899999999999999999999     899999999


Q ss_pred             hhhhccCC
Q psy3253         237 FIQRHDTD  244 (251)
Q Consensus       237 ~~~~~~~~  244 (251)
                      ||+..+|+
T Consensus       279 ~f~~~~~~  286 (327)
T 3a62_A          279 FFRHINWE  286 (327)
T ss_dssp             GGSSCCHH
T ss_pred             cccCCCHH
Confidence            99988764

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=1.9e-44  Score=318.65  Aligned_cols=207  Identities=26%  Similarity=0.399  Sum_probs=177.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...|+||||+.||+|.+++. ....+++..+..++.||+.||.|||++||+|||||      
T Consensus        65 ~~l~hpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~i~-~~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlK------  137 (444)
T 3soa_A           65 RLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIV-AREYYSEADASHCIQQILEAVLHCHQMGVVHRNLK------  137 (444)
T ss_dssp             HHCCBTTBCCEEEEEECSSEEEEEECCCBCCBHHHHHH-HCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS------
T ss_pred             HhCCCcCCCeEEEEEEECCEEEEEEEeCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC------
Confidence            46899999999999999999999999999999999997 45789999999999999999999999999999999      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecC---CCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN---TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~---~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                 |+||+++   .++.+||+|||++..............||+.|+|||++.+..+
T Consensus       138 ---------------------------p~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~  190 (444)
T 3soa_A          138 ---------------------------PENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPY  190 (444)
T ss_dssp             ---------------------------STTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCB
T ss_pred             ---------------------------HHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcCCCC
Confidence                                       6677776   4567999999999776554444445678999999999999899


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++||||+||++|+|++|.+||.+.+.......+.... ......+..+++++.+||.+||+.||++|||++|+|+|||
T Consensus       191 ~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~hp~  270 (444)
T 3soa_A          191 GKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPW  270 (444)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSCT
T ss_pred             CCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcCcc
Confidence            999999999999999999999998877665554443322 1222234578999999999999999999999999999999


Q ss_pred             hhhcc
Q psy3253         238 IQRHD  242 (251)
Q Consensus       238 ~~~~~  242 (251)
                      |+...
T Consensus       271 ~~~~~  275 (444)
T 3soa_A          271 ISHRS  275 (444)
T ss_dssp             THHHH
T ss_pred             ccCCc
Confidence            98653

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=2.3e-44  Score=309.24  Aligned_cols=204  Identities=29%  Similarity=0.487  Sum_probs=180.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....|+||||+.||+|.+++.. ...+++..++.++.||+.||.|||++||+|||||     
T Consensus        95 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk-----  168 (350)
T 1rdq_E           95 LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLK-----  168 (350)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HHhCCCCCCCeEEEEEEcCCEEEEEEcCCCCCcHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCc-----
Confidence            4678999999999999999999999999999999999974 4679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.+||+|||+++.....   .....||+.|+|||++.+..++.
T Consensus       169 ----------------------------p~NIll~~~g~~kL~DFg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~  217 (350)
T 1rdq_E          169 ----------------------------PENLLIDQQGYIQVTDFGFAKRVKGR---TWTLCGTPEALAPEIILSKGYNK  217 (350)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCTTCEECSSC---BCCCEECGGGCCHHHHTTCCBCT
T ss_pred             ----------------------------cceEEECCCCCEEEcccccceeccCC---cccccCCccccCHHHhcCCCCCC
Confidence                                        88999999999999999999765432   23456899999999999989999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl~h  235 (251)
                      ++|+|||||++|+|++|..||.+.+.......+....   ...+..+++++.++|.+||+.||++||+     ++|+++|
T Consensus       218 ~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~---~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h  294 (350)
T 1rdq_E          218 AVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK---VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH  294 (350)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC---CCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred             cCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCC---CCCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhC
Confidence            9999999999999999999998777666555444332   2235678999999999999999999998     9999999


Q ss_pred             hhhhhccCC
Q psy3253         236 EFIQRHDTD  244 (251)
Q Consensus       236 p~~~~~~~~  244 (251)
                      |||+..+|+
T Consensus       295 ~~f~~~~w~  303 (350)
T 1rdq_E          295 KWFATTDWI  303 (350)
T ss_dssp             GGGTTCCHH
T ss_pred             cCcCCCCHH
Confidence            999998874

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=1.5e-44  Score=309.77  Aligned_cols=203  Identities=29%  Similarity=0.520  Sum_probs=173.2

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||||++++++|.+....|+||||+.+|+|.+++. ....+++..++.++.||+.||.|||++||+|||||         
T Consensus        68 ~hp~iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~-~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlk---------  137 (345)
T 3a8x_A           68 NHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQ-RQRKLPEEHARFYSAEISLALNYLHERGIIYRDLK---------  137 (345)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC---------
T ss_pred             CCCccCeEEEEEEeCCEEEEEEeCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC---------
Confidence            89999999999999999999999999999999997 44679999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhH
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM  164 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  164 (251)
                                              |+||+++.++.+||+|||+++.............||+.|+|||++.+..++.++|+
T Consensus       138 ------------------------p~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  193 (345)
T 3a8x_A          138 ------------------------LDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDW  193 (345)
T ss_dssp             ------------------------GGGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHH
T ss_pred             ------------------------HHHEEECCCCCEEEEeccccccccCCCCcccccCCCccccCccccCCCCCChHHhH
Confidence                                    89999999999999999999764433334455678999999999999899999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCC---------cchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH------
Q psy3253         165 WSLGITALEMAEGKPPYGDIH---------PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA------  229 (251)
Q Consensus       165 wslG~~l~~l~~g~~p~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~------  229 (251)
                      ||+||++|+|++|..||....         .......+...   ....+..+++++.++|.+||+.||++||++      
T Consensus       194 wslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~---~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~  270 (345)
T 3a8x_A          194 WALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEK---QIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGF  270 (345)
T ss_dssp             HHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHC---CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCCTTTHH
T ss_pred             HHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcC---CCCCCCCCCHHHHHHHHHHhcCCHhHCCCCCCcCCH
Confidence            999999999999999996421         11111122222   222356789999999999999999999995      


Q ss_pred             HHHhcChhhhhccCC
Q psy3253         230 SEMLNHEFIQRHDTD  244 (251)
Q Consensus       230 ~evl~hp~~~~~~~~  244 (251)
                      +|+++||||+..+|+
T Consensus       271 ~~i~~hp~f~~~~w~  285 (345)
T 3a8x_A          271 ADIQGHPFFRNVDWD  285 (345)
T ss_dssp             HHHHTSGGGTTCCHH
T ss_pred             HHHhcCCccCCCCHH
Confidence            899999999998875

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=1.5e-44  Score=305.31  Aligned_cols=209  Identities=27%  Similarity=0.458  Sum_probs=171.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...++||||+++ +|.+++......+++..++.++.|++.||.|||++|++|||||      
T Consensus        74 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dik------  146 (311)
T 3niz_A           74 KELHHPNIVSLIDVIHSERCLTLVFEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLK------  146 (311)
T ss_dssp             HHCCCTTBCCEEEEECCSSCEEEEEECCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC------
T ss_pred             HHcCCCCEeeeeeEEccCCEEEEEEcCCCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCc------
Confidence            468999999999999999999999999975 8988887666779999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~  160 (251)
                                                 |+||+++.++.+||+|||++..............+|+.|+|||++.+ ..++.
T Consensus       147 ---------------------------p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~  199 (311)
T 3niz_A          147 ---------------------------PQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYST  199 (311)
T ss_dssp             ---------------------------GGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTCCSCCT
T ss_pred             ---------------------------hHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCCCCCCc
Confidence                                       88999999999999999999876544334444567999999999876 56899


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CCCCC-CC-----------------------CCCCCCCHHHHH
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TKPPP-SF-----------------------REPDVWTPEFID  213 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~~~~-~~-----------------------~~~~~~~~~~~~  213 (251)
                      ++||||+||++|+|++|..||.+.........+.   ....+ .+                       .....+++++.+
T Consensus       200 ~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (311)
T 3niz_A          200 SVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGID  279 (311)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHH
T ss_pred             hHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHH
Confidence            9999999999999999999997655443332211   11000 00                       012346789999


Q ss_pred             HHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         214 FVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       214 li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      ||.+||+.||++|||++|+++||||+..+++
T Consensus       280 li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  310 (311)
T 3niz_A          280 LLSNMLCFDPNKRISARDAMNHPYFKDLDPQ  310 (311)
T ss_dssp             HHHHHSCSCTTTSCCHHHHHTSGGGTTSCTT
T ss_pred             HHHHHcCCChhHCCCHHHHhcCcccccCCcc
Confidence            9999999999999999999999999987653

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=3.1e-44  Score=304.15  Aligned_cols=215  Identities=26%  Similarity=0.445  Sum_probs=172.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-----KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-----~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      |++++||||+++++++.+++..++||||++ |+|.+++....     ..+++..++.++.||+.||.|||++|++|||||
T Consensus        57 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlk  135 (317)
T 2pmi_A           57 MKELKHENIVRLYDVIHTENKLTLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLK  135 (317)
T ss_dssp             HTTCCBTTBCCEEEEECCTTEEEEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             HHhcCCCCcceEEEEEEECCeEEEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC
Confidence            468899999999999999999999999997 59999987442     468999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.+||+|||++..............+|+.|+|||++.+
T Consensus       136 ---------------------------------p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  182 (317)
T 2pmi_A          136 ---------------------------------PQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMG  182 (317)
T ss_dssp             ---------------------------------GGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTT
T ss_pred             ---------------------------------hHHeEEcCCCCEEECcCccceecCCCcccCCCCcccccccCchHhhC
Confidence                                             88999999999999999999766543333344567999999999976


Q ss_pred             -CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CCCC--------------CC--------------CCC
Q psy3253         156 -IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TKPP--------------PS--------------FRE  203 (251)
Q Consensus       156 -~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~~~--------------~~--------------~~~  203 (251)
                       ..++.++||||+||++|+|++|..||.+.+.......+.   ....              ..              ...
T Consensus       183 ~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (317)
T 2pmi_A          183 SRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHT  262 (317)
T ss_dssp             CCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGC
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhHHHhhcccc
Confidence             468999999999999999999999997765443322210   0000              00              001


Q ss_pred             CCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCCCCC
Q psy3253         204 PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQNG  249 (251)
Q Consensus       204 ~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~~~~  249 (251)
                      ...+++++.+||.+||+.||++|||++|+++||||++..+.+...+
T Consensus       263 ~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~~~~  308 (317)
T 2pmi_A          263 KEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYYHHASMGG  308 (317)
T ss_dssp             SSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCC------
T ss_pred             cccCCHHHHHHHHHHCCCCcccCCCHHHHhCChhhhcccchhhccc
Confidence            2357889999999999999999999999999999999988876544

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.1e-45  Score=309.25  Aligned_cols=208  Identities=25%  Similarity=0.327  Sum_probs=175.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||++||+|.+++......+++.++..++.|++.||.|||++|++|||||      
T Consensus        56 ~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlk------  129 (321)
T 1tki_A           56 NIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIR------  129 (321)
T ss_dssp             HHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC------
T ss_pred             HhCCCCCCCeEeEEEecCCEEEEEEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCC------
Confidence            46799999999999999999999999999999999997555679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCC--CCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT--EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                 |+||+++.  ++.+||+|||++...... .......+|+.|+|||++.+..++
T Consensus       130 ---------------------------p~NIl~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~  181 (321)
T 1tki_A          130 ---------------------------PENIIYQTRRSSTIKIIEFGQARQLKPG-DNFRLLFTAPEYYAPEVHQHDVVS  181 (321)
T ss_dssp             ---------------------------GGGEEESSSSCCCEEECCCTTCEECCTT-CEEEEEESCGGGSCHHHHTTCEEC
T ss_pred             ---------------------------HHHEEEccCCCCCEEEEECCCCeECCCC-CccccccCChhhcCcHHhcCCCCC
Confidence                                       77888876  688999999999765433 223345689999999999888889


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC-CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP-PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      .++||||+||++|+|++|..||.+.........+..... .....+..+++++.+++.+||..||++|||++|+++||||
T Consensus       182 ~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~~  261 (321)
T 1tki_A          182 TATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWL  261 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHH
T ss_pred             chhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcChhh
Confidence            999999999999999999999987766555544433221 1111234679999999999999999999999999999999


Q ss_pred             hhccC
Q psy3253         239 QRHDT  243 (251)
Q Consensus       239 ~~~~~  243 (251)
                      ++...
T Consensus       262 ~~~~~  266 (321)
T 1tki_A          262 KQKIE  266 (321)
T ss_dssp             HSCGG
T ss_pred             ccCcc
Confidence            86543

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=9.7e-45  Score=311.55  Aligned_cols=208  Identities=28%  Similarity=0.392  Sum_probs=171.5

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      ++++||||+++++++.++...|+||||+++++|.+++...   ...+++..+..++.||+.||.|||++|++|||||   
T Consensus        81 ~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlk---  157 (351)
T 3c0i_A           81 HMLKHPHIVELLETYSSDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVK---  157 (351)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS---
T ss_pred             HhCCCCCCCcEEEEEEeCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCC---
Confidence            4689999999999999999999999999999999888533   3458999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCC---CeEecccccccccCccccccccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG---HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                    |+||+++.++   .+||+|||++..............||+.|+|||++.+
T Consensus       158 ------------------------------p~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~  207 (351)
T 3c0i_A          158 ------------------------------PHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKR  207 (351)
T ss_dssp             ------------------------------GGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTT
T ss_pred             ------------------------------hHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcC
Confidence                                          7788876554   4999999999876554333445678999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC-CCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP-TKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ..++.++||||+||++|+|++|..||.+.... ....+. .........+..+++++.++|.+||+.||++|||++|+++
T Consensus       208 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          208 EPYGKPVDVWGCGVILFILLSGCLPFYGTKER-LFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             CCBCTHHHHHHHHHHHHHHHHSSCSSCSSHHH-HHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCCCchHhhHHHHHHHHHHHHCCCCCCCcHHH-HHHHHHcCCCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            89999999999999999999999999765432 222221 1111111123567999999999999999999999999999


Q ss_pred             ChhhhhccC
Q psy3253         235 HEFIQRHDT  243 (251)
Q Consensus       235 hp~~~~~~~  243 (251)
                      ||||+..++
T Consensus       287 hp~~~~~~~  295 (351)
T 3c0i_A          287 HPWLKERDR  295 (351)
T ss_dssp             SHHHHTHHH
T ss_pred             ChhhcCCcc
Confidence            999987553

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.5e-44  Score=305.69  Aligned_cols=202  Identities=29%  Similarity=0.489  Sum_probs=173.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....++||||+ +|+|.+++. ....+++.+++.++.|++.||.|||++|++|||||     
T Consensus        63 l~~l~hpnIv~l~~~~~~~~~~~lv~E~~-~g~l~~~l~-~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlk-----  135 (336)
T 3h4j_B           63 LKLLRHPHIIKLYDVITTPTDIVMVIEYA-GGELFDYIV-EKKRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLK-----  135 (336)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEECCC-CEEHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCS-----
T ss_pred             HHhCCCCCCCeEEEEEEeCCEEEEEEECC-CCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCc-----
Confidence            46789999999999999999999999999 679999887 34679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC-C
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY-D  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~  159 (251)
                                                  |+||+++.++.+||+|||++...... .......||+.|+|||++.+..+ +
T Consensus       136 ----------------------------p~NIll~~~~~~kl~DFG~s~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~  186 (336)
T 3h4j_B          136 ----------------------------PENLLLDDNLNVKIADFGLSNIMTDG-NFLKTSCGSPNYAAPEVINGKLYAG  186 (336)
T ss_dssp             ----------------------------TTTEEECTTCCEEECCSSCTBTTTTS-BTTCCCTTSTTTSCGGGSCCSGGGC
T ss_pred             ----------------------------hhhEEEcCCCCEEEEEeccceeccCC-cccccccCCcCcCCHHHHcCCCCCC
Confidence                                        88999999999999999999765433 22344568999999999988776 6


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ  239 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~  239 (251)
                      +++||||+||++|+|++|..||.+.........+...   ....+..+++++.++|.+||+.||++|||++|+++||||+
T Consensus       187 ~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~---~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~  263 (336)
T 3h4j_B          187 PEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSC---VYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFN  263 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBCCCCSS---CCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTCHHHH
T ss_pred             CccchhHHHHHHHHHHhCCCCCCCccHHHHHHHHHcC---CCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhChhhc
Confidence            8999999999999999999999766554444333222   2334667899999999999999999999999999999998


Q ss_pred             hc
Q psy3253         240 RH  241 (251)
Q Consensus       240 ~~  241 (251)
                      ..
T Consensus       264 ~~  265 (336)
T 3h4j_B          264 VN  265 (336)
T ss_dssp             TT
T ss_pred             cC
Confidence            53

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=2.6e-44  Score=312.18  Aligned_cols=207  Identities=29%  Similarity=0.593  Sum_probs=175.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||++++++|.+....|+||||+.||+|.+++. ....+++..++.++.||+.||.|||++||+|||||     
T Consensus        69 l~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~gg~L~~~l~-~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlk-----  142 (384)
T 4fr4_A           69 MQGLEHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQ-QNVHFKEETVKLFICELVMALDYLQNQRIIHRDMK-----  142 (384)
T ss_dssp             HHTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCc-----
Confidence            357899999999999999999999999999999999997 56789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc---CC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE---IG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~  157 (251)
                                                  |+||+++.++.++|+|||++...... .......||+.|+|||++.+   ..
T Consensus       143 ----------------------------p~NIll~~~g~vkL~DFG~a~~~~~~-~~~~~~~gt~~Y~aPE~~~~~~~~~  193 (384)
T 4fr4_A          143 ----------------------------PDNILLDEHGHVHITDFNIAAMLPRE-TQITTMAGTKPYMAPEMFSSRKGAG  193 (384)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCTTCEECCTT-CCBCCCCSCGGGCCGGGTCCCSSCC
T ss_pred             ----------------------------HHHeEECCCCCEEEeccceeeeccCC-CceeccCCCccccCCeeeccCCCCC
Confidence                                        89999999999999999999765433 23345678999999999964   45


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcch---hhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-HHHHh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMR---AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-ASEML  233 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-~~evl  233 (251)
                      ++.++|+|||||++|+|++|..||.......   ....+...   ....+..+++++.+||.+||+.||++||+ +++++
T Consensus       194 ~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~---~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~  270 (384)
T 4fr4_A          194 YSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETT---VVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQ  270 (384)
T ss_dssp             BCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHC---CCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred             CCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhc---ccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHH
Confidence            8899999999999999999999996433222   11111111   22335678999999999999999999998 99999


Q ss_pred             cChhhhhccCCC
Q psy3253         234 NHEFIQRHDTDP  245 (251)
Q Consensus       234 ~hp~~~~~~~~~  245 (251)
                      +||||+..+|+.
T Consensus       271 ~hp~f~~~~w~~  282 (384)
T 4fr4_A          271 NFPYMNDINWDA  282 (384)
T ss_dssp             TSGGGTTCCHHH
T ss_pred             cChhhhcCCHHH
Confidence            999999988753

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=1.1e-44  Score=316.97  Aligned_cols=209  Identities=26%  Similarity=0.441  Sum_probs=179.5

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +.++||||++++++|.++..+|+||||++||+|.++++.  ..+++..++.++.||+.||.|||++||+|||||      
T Consensus       124 ~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~--~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLK------  195 (410)
T 3v8s_A          124 AFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSN--YDVPEKWARFYTAEVVLALDAIHSMGFIHRDVK------  195 (410)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS------
T ss_pred             HhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCC------
Confidence            457999999999999999999999999999999999863  579999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCC---
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIG---  157 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~---  157 (251)
                                                 |+||+++.++++||+|||+++....... ......||+.|+|||++.+..   
T Consensus       196 ---------------------------p~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~  248 (410)
T 3v8s_A          196 ---------------------------PDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDG  248 (410)
T ss_dssp             ---------------------------GGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTC
T ss_pred             ---------------------------HHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCc
Confidence                                       9999999999999999999976543322 234567899999999997655   


Q ss_pred             -CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCc--cCCHHHHh
Q psy3253         158 -YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEE--RATASEML  233 (251)
Q Consensus       158 -~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~--Rps~~evl  233 (251)
                       ++.++|+|||||++|+|++|.+||.+.+.......+... ....++....+++++.+||.+||..+|++  |++++|++
T Consensus       249 ~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~  328 (410)
T 3v8s_A          249 YYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIK  328 (410)
T ss_dssp             EEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHH
T ss_pred             CCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHh
Confidence             788999999999999999999999887766655554332 11233334568999999999999999988  99999999


Q ss_pred             cChhhhhccCCC
Q psy3253         234 NHEFIQRHDTDP  245 (251)
Q Consensus       234 ~hp~~~~~~~~~  245 (251)
                      +||||+..+|+.
T Consensus       329 ~Hp~f~~~~w~~  340 (410)
T 3v8s_A          329 RHLFFKNDQWAW  340 (410)
T ss_dssp             TSGGGCCSSCCS
T ss_pred             cCccccCCCHHH
Confidence            999999998864

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=6.2e-44  Score=296.29  Aligned_cols=210  Identities=28%  Similarity=0.517  Sum_probs=153.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....++||||+++++|.+++......+++..+..++.|++.||.|||++|++|||||     
T Consensus        65 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~-----  139 (278)
T 3cok_A           65 HCQLKHPSILELYNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLT-----  139 (278)
T ss_dssp             HTTBCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCC-----
T ss_pred             HHhCCCCCeEeEEEEEccCCeEEEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----
Confidence            357899999999999999999999999999999999998656789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||.+..............+++.|+|||.+.+..++.
T Consensus       140 ----------------------------p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  191 (278)
T 3cok_A          140 ----------------------------LSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGL  191 (278)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCCTTCEECC----------------------------
T ss_pred             ----------------------------HHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCCCc
Confidence                                        8899999999999999999976554333334456889999999999888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++||||+|+++|+|++|..||...........+...   ....+..++.++.++|.+||+.||++|||++|+++||||++
T Consensus       192 ~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~  268 (278)
T 3cok_A          192 ESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLA---DYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFMSR  268 (278)
T ss_dssp             CTHHHHHHHHHHHHHHSSCSSCCCSCC-----CCSS---CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSTTTC-
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHHhhc---ccCCccccCHHHHHHHHHHcccCHhhCCCHHHHhcCccccC
Confidence            999999999999999999999765544433322221   23345668999999999999999999999999999999987


Q ss_pred             ccCCCC
Q psy3253         241 HDTDPS  246 (251)
Q Consensus       241 ~~~~~~  246 (251)
                      ......
T Consensus       269 ~~~~~~  274 (278)
T 3cok_A          269 NSSTKS  274 (278)
T ss_dssp             ------
T ss_pred             CCCccc
Confidence            665443

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=3.9e-44  Score=299.32  Aligned_cols=207  Identities=28%  Similarity=0.470  Sum_probs=167.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++||||+.+ +|.+++......+++..++.++.|++.||.|||++|++|||||     
T Consensus        54 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-----  127 (288)
T 1ob3_A           54 LKELKHSNIVKLYDVIHTKKRLVLVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLK-----  127 (288)
T ss_dssp             GGGCCCTTBCCEEEEEECSSCEEEEEECCSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HHhcCCCCEeeeeeEEccCCeEEEEEEecCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-----
Confidence            4678999999999999999999999999975 9999998666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.+||+|||++..............+|+.|+|||++.+ ..++
T Consensus       128 ----------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~  179 (288)
T 1ob3_A          128 ----------------------------PQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYS  179 (288)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCC
T ss_pred             ----------------------------HHHEEEcCCCCEEEeECccccccCccccccccccccccccCchheeCCCCCC
Confidence                                        88999999999999999999765433333344567999999999965 4589


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC----CCC-------------CCCC---------CCCCCCCHHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP----TKP-------------PPSF---------REPDVWTPEFID  213 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~----~~~-------------~~~~---------~~~~~~~~~~~~  213 (251)
                      .++||||+||++|+|++|.+||.+.+.......+.    ...             ....         .....+++++.+
T Consensus       180 ~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (288)
T 1ob3_A          180 TTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGID  259 (288)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHHH
Confidence            99999999999999999999997665433322110    000             0000         112457899999


Q ss_pred             HHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         214 FVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       214 li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +|.+||+.||++|||++|+++||||++.
T Consensus       260 li~~~L~~dP~~Rpt~~e~l~hp~f~~~  287 (288)
T 1ob3_A          260 LLSKMLKLDPNQRITAKQALEHAYFKEN  287 (288)
T ss_dssp             HHHHHTCSSTTTSCCHHHHHTSGGGGC-
T ss_pred             HHHHHcCCCcccCCCHHHHhcCcchhhc
Confidence            9999999999999999999999999864

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=2.2e-44  Score=317.41  Aligned_cols=211  Identities=24%  Similarity=0.420  Sum_probs=179.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||++++++|.++..+|+||||+.||+|.+++......+++..++.++.||+.||.|||++||+|||||      
T Consensus       129 ~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLK------  202 (437)
T 4aw2_A          129 VNGDSKWITTLHYAFQDDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIK------  202 (437)
T ss_dssp             HHSCTTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS------
T ss_pred             HhCCCCCEEEEEEEEeeCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccC------
Confidence            35789999999999999999999999999999999998556789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccc-----c
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQ-----E  155 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~-----~  155 (251)
                                                 |+||+++.++.+||+|||+++....... ......||+.|+|||++.     .
T Consensus       203 ---------------------------p~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  255 (437)
T 4aw2_A          203 ---------------------------PDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGK  255 (437)
T ss_dssp             ---------------------------GGGEEECTTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSC
T ss_pred             ---------------------------HHHeeEcCCCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCC
Confidence                                       9999999999999999999976543322 223457899999999996     4


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCC-CCCCCCCHHHHHHHHHhhhcCcCc--cCCHHH
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSF-REPDVWTPEFIDFVSRCLVKNPEE--RATASE  231 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~li~~~l~~~p~~--Rps~~e  231 (251)
                      ..++.++|+||+||++|+|++|.+||.+.+.......+.... ...+ .....+++++.+||.+||..+|++  |++++|
T Consensus       256 ~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~e  335 (437)
T 4aw2_A          256 GRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIED  335 (437)
T ss_dssp             CEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHH
T ss_pred             CCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccccCCcccccCCHHHHHHHHHHhcccccccCCCCHHH
Confidence            568999999999999999999999998877665554443211 1111 123458999999999999998888  999999


Q ss_pred             HhcChhhhhccCCC
Q psy3253         232 MLNHEFIQRHDTDP  245 (251)
Q Consensus       232 vl~hp~~~~~~~~~  245 (251)
                      +++||||+..+|+.
T Consensus       336 il~Hpff~~i~w~~  349 (437)
T 4aw2_A          336 FKKHPFFSGIDWDN  349 (437)
T ss_dssp             HHTSGGGTTCCTTT
T ss_pred             HhCCCccCCCCHHH
Confidence            99999999999875

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=3.8e-44  Score=305.10  Aligned_cols=210  Identities=24%  Similarity=0.434  Sum_probs=164.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++||||++ |+|.+++. ....+++..++.++.||+.||.|||++|++|||||     
T Consensus        87 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~~~-~~~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlk-----  159 (329)
T 3gbz_A           87 LKELQHRNIIELKSVIHHNHRLHLIFEYAE-NDLKKYMD-KNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLK-----  159 (329)
T ss_dssp             GGGCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHH-HCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HHHcCCCCcceEEEEEecCCEEEEEEecCC-CCHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCC-----
Confidence            467899999999999999999999999997 59999997 45679999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceec-----CCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL-----NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~-----~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                  |+||++     +..+.+||+|||++..............+|+.|+|||++.+
T Consensus       160 ----------------------------p~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~  211 (329)
T 3gbz_A          160 ----------------------------PQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLG  211 (329)
T ss_dssp             ----------------------------GGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHHHHTT
T ss_pred             ----------------------------HHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHHHhcC
Confidence                                        667777     34455999999999766544334444567999999999976


Q ss_pred             C-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CCC-C-------------CCCC----------CCCC
Q psy3253         156 I-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KPP-P-------------SFRE----------PDVW  207 (251)
Q Consensus       156 ~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~~-~-------------~~~~----------~~~~  207 (251)
                      . .++.++||||+||++|+|++|..||.+.........+..   ... .             .+..          ...+
T Consensus       212 ~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (329)
T 3gbz_A          212 SRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALL  291 (329)
T ss_dssp             CCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGS
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhccccc
Confidence            4 489999999999999999999999977655443322210   000 0             0000          0116


Q ss_pred             CHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         208 TPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       208 ~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      ++++.+||.+||+.||++|||++|+++||||+..+|+|
T Consensus       292 ~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~P  329 (329)
T 3gbz_A          292 DDEGLDLLTAMLEMDPVKRISAKNALEHPYFSHNDFDP  329 (329)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSSCSCC
T ss_pred             CHHHHHHHHHHccCChhhCCCHHHHhCCcccCCCCCCC
Confidence            78999999999999999999999999999999999986

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=1.1e-43  Score=308.59  Aligned_cols=211  Identities=30%  Similarity=0.573  Sum_probs=169.2

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      ++++||||+++++++.++...|+||||+++|+|.+++... ...+++..++.++.||+.||.|||++||+|||||     
T Consensus        81 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlk-----  155 (389)
T 3gni_B           81 KLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVK-----  155 (389)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HhCCCCCCCcEeEEEEECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----
Confidence            4689999999999999999999999999999999999744 3679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-------cccccccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-------AKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-------~~~~~~~~~~~y~aPE~~  153 (251)
                                                  |+||+++.++.++|+|||.+.......       .......+|+.|+|||++
T Consensus       156 ----------------------------p~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  207 (389)
T 3gni_B          156 ----------------------------ASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVL  207 (389)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHH
T ss_pred             ----------------------------HHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHHHH
Confidence                                        889999999999999999886442211       112223678889999999


Q ss_pred             cc--CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC---------------------------------
Q psy3253         154 QE--IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP---------------------------------  198 (251)
Q Consensus       154 ~~--~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~---------------------------------  198 (251)
                      .+  ..++.++||||+||++|+|++|..||.+.+.......+.....                                 
T Consensus       208 ~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (389)
T 3gni_B          208 QQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTT  287 (389)
T ss_dssp             STTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC--------------------------------------
T ss_pred             hccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCcccccccccccccccccccccccccccccccc
Confidence            77  6789999999999999999999999976555444333221110                                 


Q ss_pred             ----------CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         199 ----------PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       199 ----------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                                .....+..+++++.+||.+||+.||++|||++|+|+||||+...+..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp~f~~~~~~~  344 (389)
T 3gni_B          288 STPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIKRRA  344 (389)
T ss_dssp             ------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGGGC---C
T ss_pred             CccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCHHHHHHhhcc
Confidence                      01112455789999999999999999999999999999999877654

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.3e-44  Score=313.45  Aligned_cols=211  Identities=27%  Similarity=0.400  Sum_probs=177.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||++++++|++...+|+||||+.||+|.+++...+..+++..++.++.||+.||.|||++||+|||||      
T Consensus       116 ~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLK------  189 (412)
T 2vd5_A          116 VNGDRRWITQLHFAFQDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIK------  189 (412)
T ss_dssp             HHSCTTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS------
T ss_pred             HhcCCCCeeeEEEEEeeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccC------
Confidence            35789999999999999999999999999999999998666789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccc------
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQ------  154 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~------  154 (251)
                                                 |+||+++.++++||+|||+++....... ......||+.|+|||++.      
T Consensus       190 ---------------------------p~NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~  242 (412)
T 2vd5_A          190 ---------------------------PDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGP  242 (412)
T ss_dssp             ---------------------------GGGEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCT
T ss_pred             ---------------------------HHHeeecCCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCc
Confidence                                       9999999999999999999976543322 223457899999999996      


Q ss_pred             -cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCC-CCCCCCCHHHHHHHHHhhhcCcCcc---CC
Q psy3253         155 -EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSF-REPDVWTPEFIDFVSRCLVKNPEER---AT  228 (251)
Q Consensus       155 -~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~li~~~l~~~p~~R---ps  228 (251)
                       ...++.++|+|||||++|+|++|..||.+.+.......+.... ...+ ..+..+++++.+||.+||. +|++|   ++
T Consensus       243 ~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~  321 (412)
T 2vd5_A          243 GTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLC-PPETRLGRGG  321 (412)
T ss_dssp             TCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCCC----CCCHHHHHHHHTTSS-CGGGCTTTTT
T ss_pred             CCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCcCCCccccCCCHHHHHHHHHHcC-ChhhcCCCCC
Confidence             3568999999999999999999999998776665544443211 0111 1235689999999999999 99998   59


Q ss_pred             HHHHhcChhhhhccCCCC
Q psy3253         229 ASEMLNHEFIQRHDTDPS  246 (251)
Q Consensus       229 ~~evl~hp~~~~~~~~~~  246 (251)
                      ++|+++||||+..+|+.-
T Consensus       322 ~~ei~~Hpff~~i~w~~l  339 (412)
T 2vd5_A          322 AGDFRTHPFFFGLDWDGL  339 (412)
T ss_dssp             HHHHHTSGGGTTCCSTTS
T ss_pred             HHHHhcCCCcCCCCHHHH
Confidence            999999999999999763

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=2.8e-43  Score=294.56  Aligned_cols=207  Identities=24%  Similarity=0.373  Sum_probs=169.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++||||+++ +|.+++......+++..++.++.|++.||.|||++|++|||||     
T Consensus        55 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dik-----  128 (292)
T 3o0g_A           55 LKELKHKNIVRLHDVLHSDKKLTLVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLK-----  128 (292)
T ss_dssp             HTTCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HhcCCCCCEeeEEeEEEeCCEEEEEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----
Confidence            4678999999999999999999999999975 7777776667889999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC-CC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~  159 (251)
                                                  |+||+++.++.+||+|||++..............+|+.|+|||++.+.. ++
T Consensus       129 ----------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~  180 (292)
T 3o0g_A          129 ----------------------------PQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYS  180 (292)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCC
T ss_pred             ----------------------------HHHEEEcCCCCEEEeecccceecCCccccccCCccccCCcChHHHcCCCCcC
Confidence                                        8899999999999999999987654444445567899999999997755 79


Q ss_pred             cchhHHHHHHHHHHHHhCCCCC-CCCCcchhhhhcC---CC-----------------------CCCCCCCCCCCCHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPY-GDIHPMRAIFMIP---TK-----------------------PPPSFREPDVWTPEFI  212 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~-~~~~~~~~~~~~~---~~-----------------------~~~~~~~~~~~~~~~~  212 (251)
                      .++||||+||++|+|++|..|| .+.+.......+.   ..                       ..........+++++.
T Consensus       181 ~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (292)
T 3o0g_A          181 TSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGR  260 (292)
T ss_dssp             THHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChHHH
Confidence            9999999999999999887775 4333322221110   00                       0001111235789999


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +||.+||+.||++|||++|+++||||++.
T Consensus       261 ~li~~~L~~dP~~R~t~~e~l~hp~f~~~  289 (292)
T 3o0g_A          261 DLLQNLLKCNPVQRISAEEALQHPYFSDF  289 (292)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHHTSGGGTTC
T ss_pred             HHHHHHhccChhhCCCHHHHhcCcccccC
Confidence            99999999999999999999999999874

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-43  Score=298.83  Aligned_cols=210  Identities=82%  Similarity=1.375  Sum_probs=183.4

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+++++|.+++......+++..+..++.|++.||.|||+.|++|||||      
T Consensus        79 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~------  152 (314)
T 3com_A           79 QQCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIK------  152 (314)
T ss_dssp             HTCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS------
T ss_pred             HhCCCCCCccEEEEEEeCCEEEEEeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcC------
Confidence            57899999999999999999999999999999999998677889999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||.+..............+++.|+|||.+.+..++.+
T Consensus       153 ---------------------------p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  205 (314)
T 3com_A          153 ---------------------------AGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCV  205 (314)
T ss_dssp             ---------------------------GGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTT
T ss_pred             ---------------------------HHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCCCcc
Confidence                                       88999999999999999999766544344445568899999999998889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +||||||+++|+|++|..||...........+.......+..+..+++++.++|.+||..||++|||++|+++||||+..
T Consensus       206 ~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~~~~~~~  285 (314)
T 3com_A          206 ADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVRSA  285 (314)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHTC
T ss_pred             ccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHhcC
Confidence            99999999999999999999877665554444444444444566689999999999999999999999999999999876


Q ss_pred             cCC
Q psy3253         242 DTD  244 (251)
Q Consensus       242 ~~~  244 (251)
                      .+.
T Consensus       286 ~~~  288 (314)
T 3com_A          286 KGV  288 (314)
T ss_dssp             CCG
T ss_pred             Ccc
Confidence            543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=7.1e-44  Score=299.04  Aligned_cols=204  Identities=33%  Similarity=0.552  Sum_probs=170.8

Q ss_pred             CCCCCCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++.+  ....|+||||+++++|.+++.  ...+++..++.++.||+.||.|||++|++|||||   
T Consensus        90 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk---  164 (298)
T 2zv2_A           90 LKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT--LKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIK---  164 (298)
T ss_dssp             HHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC--SSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC---
T ss_pred             HHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC---
Confidence            357899999999999986  568999999999999988653  4679999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC-
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-  157 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-  157 (251)
                                                    |+||+++.++.+||+|||++..............+|+.|+|||.+.+.. 
T Consensus       165 ------------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  214 (298)
T 2zv2_A          165 ------------------------------PSNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRK  214 (298)
T ss_dssp             ------------------------------GGGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCC
T ss_pred             ------------------------------HHHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCC
Confidence                                          8899999999999999999976654433334457899999999997655 


Q ss_pred             --CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         158 --YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       158 --~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                        ++.++|||||||++|+|++|..||.+.........+.... ........+++++.++|.+||+.||++|||++|+++|
T Consensus       215 ~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~h  293 (298)
T 2zv2_A          215 IFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKIKSQA-LEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLH  293 (298)
T ss_dssp             CEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC-CCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTC
T ss_pred             CCCCchhhhHhHHHHHHHHHHCCCCCCCccHHHHHHHHhccc-CCCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhcC
Confidence              3778999999999999999999998766544433332221 1223345689999999999999999999999999999


Q ss_pred             hhhhh
Q psy3253         236 EFIQR  240 (251)
Q Consensus       236 p~~~~  240 (251)
                      |||++
T Consensus       294 p~~~~  298 (298)
T 2zv2_A          294 PWVTR  298 (298)
T ss_dssp             HHHHC
T ss_pred             ccccC
Confidence            99974

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=1.8e-43  Score=293.85  Aligned_cols=208  Identities=31%  Similarity=0.541  Sum_probs=176.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....++||||+++++|.+++.. ...+++..+..++.|++.||.|||++|++|||||     
T Consensus        63 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~-~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlk-----  136 (279)
T 3fdn_A           63 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQK-LSKFDEQRTATYITELANALSYCHSKRVIHRDIK-----  136 (279)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCC-----
T ss_pred             HHcCCCCCCcchhheEecCCEEEEEEecCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCEecccCC-----
Confidence            3678999999999999999999999999999999999973 4679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.++|+|||++......  ......+++.|+|||.+.+..++.
T Consensus       137 ----------------------------p~Nili~~~~~~~l~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~  186 (279)
T 3fdn_A          137 ----------------------------PENLLLGSAGELKIADFGWSVHAPSS--RRTDLCGTLDYLPPEMIEGRMHDE  186 (279)
T ss_dssp             ----------------------------GGGEEECTTSCEEECSCCEESCC----------CCCCTTCCHHHHTTCCCCT
T ss_pred             ----------------------------hHhEEEcCCCCEEEEeccccccCCcc--cccccCCCCCccCHhHhccCCCCc
Confidence                                        88999999999999999998654332  223456789999999999988999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++||||+|+++|+|++|..||...+.......+...   ....+..+++++.++|.+||+.||++|||++|+++||||+.
T Consensus       187 ~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~~~~~  263 (279)
T 3fdn_A          187 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITA  263 (279)
T ss_dssp             THHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHT---CCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCHHHHH
T ss_pred             cchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhC---CCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhCccccC
Confidence            999999999999999999999877655554433332   22235668999999999999999999999999999999998


Q ss_pred             ccCCCCC
Q psy3253         241 HDTDPSQ  247 (251)
Q Consensus       241 ~~~~~~~  247 (251)
                      ....++.
T Consensus       264 ~~~~~~~  270 (279)
T 3fdn_A          264 NSSKPSN  270 (279)
T ss_dssp             HCSSCCC
T ss_pred             CccCccc
Confidence            7776654

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=1.6e-43  Score=307.77  Aligned_cols=210  Identities=21%  Similarity=0.391  Sum_probs=176.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....++||||+.+|+|.+++......+++..+..++.||+.||.|||++|++|||||     
T Consensus       102 l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlk-----  176 (387)
T 1kob_A          102 MNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIK-----  176 (387)
T ss_dssp             HTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----
T ss_pred             HHhCCCcCCCeEEEEEEeCCEEEEEEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccc-----
Confidence            468899999999999999999999999999999999997555689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecC--CCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN--TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~--~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++  ..+.+||+|||++....... ......+|+.|+|||++.+..+
T Consensus       177 ----------------------------p~NIll~~~~~~~vkL~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~  227 (387)
T 1kob_A          177 ----------------------------PENIMCETKKASSVKIIDFGLATKLNPDE-IVKVTTATAEFAAPEIVDREPV  227 (387)
T ss_dssp             ----------------------------GGGEEESSTTCCCEEECCCTTCEECCTTS-CEEEECSSGGGCCHHHHTTCCB
T ss_pred             ----------------------------hHHeEEecCCCCceEEEecccceecCCCc-ceeeeccCCCccCchhccCCCC
Confidence                                        7788886  34679999999997654332 2233468999999999999899


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++||||+||++|+|++|..||.+.+.......+... .......+..+++++.+||.+||..||++|||++|+++|||
T Consensus       228 ~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~hp~  307 (387)
T 1kob_A          228 GFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPW  307 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTT
T ss_pred             CCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCcc
Confidence            99999999999999999999999877655444333222 11122234568999999999999999999999999999999


Q ss_pred             hhhccCC
Q psy3253         238 IQRHDTD  244 (251)
Q Consensus       238 ~~~~~~~  244 (251)
                      |+...+.
T Consensus       308 ~~~~~~~  314 (387)
T 1kob_A          308 LKGDHSN  314 (387)
T ss_dssp             TSSCCTT
T ss_pred             ccCCccc
Confidence            9875443

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.4e-44  Score=304.46  Aligned_cols=207  Identities=28%  Similarity=0.448  Sum_probs=173.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+++++|.+++. ....+++..+..++.||+.||.|||++|++|||||      
T Consensus        69 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlk------  141 (326)
T 2y0a_A           69 KEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLK------  141 (326)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHT-TSSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCC------
T ss_pred             HhCCCCCCCcEEEEEEeCCEEEEEEEcCCCCCHHHHHH-hcCCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCC------
Confidence            46899999999999999999999999999999999996 45789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCC----CeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG----HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                 |+||+++.++    .+||+|||++...... .......+|+.|+|||++.+..
T Consensus       142 ---------------------------p~NIll~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~  193 (326)
T 2y0a_A          142 ---------------------------PENIMLLDRNVPKPRIKIIDFGLAHKIDFG-NEFKNIFGTPEFVAPEIVNYEP  193 (326)
T ss_dssp             ---------------------------GGGEEESCSSSSSCCEEECCCTTCEECCTT-SCCCCCCSCTTTCCHHHHTTCC
T ss_pred             ---------------------------HHHEEEecCCCCCCCEEEEECCCCeECCCC-CccccccCCcCcCCceeecCCC
Confidence                                       7788887766    7999999999765432 2233456899999999999889


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      ++.++||||+||++|+|++|..||.+.........+.... ......+..+++.+.++|.+||+.||++|||++|+++||
T Consensus       194 ~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp  273 (326)
T 2y0a_A          194 LGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHP  273 (326)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHST
T ss_pred             CCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHhcCC
Confidence            9999999999999999999999997766554443332221 111112356789999999999999999999999999999


Q ss_pred             hhhhccC
Q psy3253         237 FIQRHDT  243 (251)
Q Consensus       237 ~~~~~~~  243 (251)
                      ||+..++
T Consensus       274 ~~~~~~~  280 (326)
T 2y0a_A          274 WIKPKDT  280 (326)
T ss_dssp             TTSCCSH
T ss_pred             CccCCcc
Confidence            9986554

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.3e-43  Score=299.71  Aligned_cols=212  Identities=22%  Similarity=0.391  Sum_probs=170.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++||||++ |+|.+++......+++..++.++.|++.||.|||++|++|||||     
T Consensus        54 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dik-----  127 (324)
T 3mtl_A           54 LKDLKHANIVTLHDIIHTEKSLTLVFEYLD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLK-----  127 (324)
T ss_dssp             HSCCCCTTBCCEEEEEECSSCEEEEEECCS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCC-----
T ss_pred             HHhcCCCCCCeeeeEEeeCCEEEEEecccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcC-----
Confidence            467899999999999999999999999996 59999998777789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.++|+|||++..............+|+.|+|||++.+ ..++
T Consensus       128 ----------------------------p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~  179 (324)
T 3mtl_A          128 ----------------------------PQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYS  179 (324)
T ss_dssp             ----------------------------GGGEEECTTCCEEECSSSEEECC------------CGGGCCHHHHTTCCCCC
T ss_pred             ----------------------------HHHEEECCCCCEEEccCcccccccCCccccccccCcccccChhhhcCCCCCC
Confidence                                        88999999999999999999765544333444567999999999876 5689


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CCCC-C-----------------------CCCCCCCCHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KPPP-S-----------------------FREPDVWTPEFI  212 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~~~-~-----------------------~~~~~~~~~~~~  212 (251)
                      .++||||+||++|+|++|..||.+.+.......+..   .... .                       ......+++++.
T Consensus       180 ~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (324)
T 3mtl_A          180 TQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGA  259 (324)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHH
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHH
Confidence            999999999999999999999987655443322111   1000 0                       001235688999


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhhhhccCCCC
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFIQRHDTDPS  246 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~  246 (251)
                      +||.+||+.||++|||++|+++||||+...+...
T Consensus       260 ~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~  293 (324)
T 3mtl_A          260 DLLTKLLQFEGRNRISAEDAMKHPFFLSLGERIH  293 (324)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHTTSGGGGGGCSTTS
T ss_pred             HHHHHHcCcCcccCCCHHHHhcChhhhhcccccc
Confidence            9999999999999999999999999998776543

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=1.3e-43  Score=305.85  Aligned_cols=205  Identities=26%  Similarity=0.420  Sum_probs=173.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....|+||||+.+|+|.+++. ....+++..+..++.||+.||.|||++||+|||||      
T Consensus        83 ~~l~hpnIv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~-~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlk------  155 (362)
T 2bdw_A           83 RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIV-AREFYSEADASHCIQQILESIAYCHSNGIVHRNLK------  155 (362)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS------
T ss_pred             HhCCCCCCCeEEEEEEeCCEEEEEEecCCCCCHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCc------
Confidence            46899999999999999999999999999999999986 45679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCC---CCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE---GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~---~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                 |+||+++.+   +.+||+|||++...... .......||+.|+|||++.+..+
T Consensus       156 ---------------------------p~NIll~~~~~~~~~kl~DfG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~  207 (362)
T 2bdw_A          156 ---------------------------PENLLLASKAKGAAVKLADFGLAIEVNDS-EAWHGFAGTPGYLSPEVLKKDPY  207 (362)
T ss_dssp             ---------------------------GGGEEESCSSTTCCEEECCCTTCBCCTTC-CSCCCSCSCTTTCCHHHHTTCCC
T ss_pred             ---------------------------hHHEEEecCCCCCCEEEeecCcceEecCC-cccccCCCCccccCHHHHccCCC
Confidence                                       778887654   45999999999766533 22334568999999999999899


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC-CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP-PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++||||+||++|+|++|.+||.+.+.......+..... .....+..+++++.+||.+||+.||++|||++|+++|||
T Consensus       208 ~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~  287 (362)
T 2bdw_A          208 SKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPW  287 (362)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTSHH
T ss_pred             CchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcc
Confidence            9999999999999999999999987766555544333211 111223567999999999999999999999999999999


Q ss_pred             hhhc
Q psy3253         238 IQRH  241 (251)
Q Consensus       238 ~~~~  241 (251)
                      |+..
T Consensus       288 ~~~~  291 (362)
T 2bdw_A          288 ICNR  291 (362)
T ss_dssp             HHTH
T ss_pred             cCCC
Confidence            9754

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=7.1e-44  Score=303.14  Aligned_cols=209  Identities=25%  Similarity=0.382  Sum_probs=152.9

Q ss_pred             CCC-CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           3 QCD-SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         3 ~l~-hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++. ||||+++++++.++...|+||||+++|+|.+++. ....+++.+++.++.|++.||.|||++|++|||||      
T Consensus        61 ~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlk------  133 (325)
T 3kn6_A           61 LCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIK-KKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLK------  133 (325)
T ss_dssp             HTTTCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-HCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC------
T ss_pred             HhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCC------
Confidence            454 9999999999999999999999999999999997 46789999999999999999999999999999998      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCC---CeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG---HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                 |+||+++.++   .++|+|||++..............+|+.|+|||++.+..+
T Consensus       134 ---------------------------p~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  186 (325)
T 3kn6_A          134 ---------------------------PENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGY  186 (325)
T ss_dssp             ---------------------------GGGEEEEC----CEEEECCCTTCEECCC----------------------CCC
T ss_pred             ---------------------------HHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCC
Confidence                                       7777776554   7999999999765544333445567899999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCc-------chhhhhcCCCCC-CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHP-------MRAIFMIPTKPP-PSFREPDVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      +.++||||+||++|+|++|..||.+.+.       ......+..... .....+..+++++.+||.+||+.||++|||++
T Consensus       187 ~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~  266 (325)
T 3kn6_A          187 DESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMS  266 (325)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTT
T ss_pred             CCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHH
Confidence            9999999999999999999999965432       122222332211 11111245799999999999999999999999


Q ss_pred             HHhcChhhhhccCCC
Q psy3253         231 EMLNHEFIQRHDTDP  245 (251)
Q Consensus       231 evl~hp~~~~~~~~~  245 (251)
                      |+++||||+.....+
T Consensus       267 ell~h~w~~~~~~~~  281 (325)
T 3kn6_A          267 GLRYNEWLQDGSQLS  281 (325)
T ss_dssp             TSTTCGGGCTTCCCC
T ss_pred             HHhcChhhccCccCC
Confidence            999999998765443

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=8.5e-44  Score=308.14  Aligned_cols=209  Identities=27%  Similarity=0.386  Sum_probs=176.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....++||||+++++|.+++......+++..+..++.||+.||.|||++|++|||||     
T Consensus       140 l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk-----  214 (373)
T 2x4f_A          140 MNQLDHANLIQLYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLK-----  214 (373)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----
T ss_pred             HHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCC-----
Confidence            468899999999999999999999999999999999997666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceec--CCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL--NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~--~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||++  +.++.+||+|||++...... .......||+.|+|||++.+..+
T Consensus       215 ----------------------------p~NIll~~~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~  265 (373)
T 2x4f_A          215 ----------------------------PENILCVNRDAKQIKIIDFGLARRYKPR-EKLKVNFGTPEFLAPEVVNYDFV  265 (373)
T ss_dssp             ----------------------------GGGEEEEETTTTEEEECCCSSCEECCTT-CBCCCCCSSCTTCCHHHHTTCBC
T ss_pred             ----------------------------HHHEEEecCCCCcEEEEeCCCceecCCc-cccccccCCCcEeChhhccCCCC
Confidence                                        778877  45678999999999765433 22334468999999999988889


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++|||||||++|+|++|..||.+.+.......+... ..........+++++.+||.+||+.||++|||++|+++|||
T Consensus       266 ~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~  345 (373)
T 2x4f_A          266 SFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEALKHPW  345 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHH
T ss_pred             CcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcC
Confidence            99999999999999999999999877665544433222 11122223568999999999999999999999999999999


Q ss_pred             hhhccC
Q psy3253         238 IQRHDT  243 (251)
Q Consensus       238 ~~~~~~  243 (251)
                      |+...+
T Consensus       346 ~~~~~~  351 (373)
T 2x4f_A          346 LSDHKL  351 (373)
T ss_dssp             HHCHHH
T ss_pred             cCCCch
Confidence            987654

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=4.4e-43  Score=292.69  Aligned_cols=205  Identities=28%  Similarity=0.516  Sum_probs=166.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      |++++||||+++++++.+....++||||+++|+|.+++..   ....+++..++.++.|++.||.|||++|++|||||  
T Consensus        74 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dik--  151 (285)
T 3is5_A           74 LKSLDHPNIIKIFEVFEDYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLK--  151 (285)
T ss_dssp             HHTCCCTTBCCEEEEEECSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS--
T ss_pred             HHhCCCchHHhHHHheecCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCC--
Confidence            3578999999999999999999999999999999998853   34789999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceec---CCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL---NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~---~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                                                     |+||++   +.++.++|+|||++...... .......+++.|+|||++.
T Consensus       152 -------------------------------p~NIl~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~t~~y~aPE~~~  199 (285)
T 3is5_A          152 -------------------------------PENILFQDTSPHSPIKIIDFGLAELFKSD-EHSTNAAGTALYMAPEVFK  199 (285)
T ss_dssp             -------------------------------GGGEEESSSSTTCCEEECCCCCCCC-----------CTTGGGCCHHHHT
T ss_pred             -------------------------------HHHEEEecCCCCCCEEEEeeecceecCCc-ccCcCcccccCcCChHHhc
Confidence                                           777777   44577999999999765433 2233456889999999985


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                       ..++.++||||+|+++|+|++|..||.+.......................+++++.+++.+||+.||++|||++|+++
T Consensus       200 -~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          200 -RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             -cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccccCcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence             4689999999999999999999999987765554433322222222233457999999999999999999999999999


Q ss_pred             Chhhhh
Q psy3253         235 HEFIQR  240 (251)
Q Consensus       235 hp~~~~  240 (251)
                      ||||++
T Consensus       279 hp~f~~  284 (285)
T 3is5_A          279 HEWFKQ  284 (285)
T ss_dssp             SGGGGC
T ss_pred             CHHhhc
Confidence            999986

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=6.1e-44  Score=303.28  Aligned_cols=207  Identities=23%  Similarity=0.386  Sum_probs=171.5

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...|+||||+++|+|.+++. ....+++..++.++.||+.||.|||++|++|||||      
T Consensus        60 ~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlk------  132 (323)
T 3tki_A           60 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE-PDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIK------  132 (323)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGSB-TTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS------
T ss_pred             HhCCCCCCCeEEEEEecCCeEEEEEEcCCCCcHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHHCCccccccc------
Confidence            46799999999999999999999999999999999986 45679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc--cccccccccccccccccccccCCC-
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT--MAKRNTVIGTPFWMAPEVIQEIGY-  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~-  158 (251)
                                                 |+||+++.++.+||+|||++......  ........||+.|+|||++.+..+ 
T Consensus       133 ---------------------------p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  185 (323)
T 3tki_A          133 ---------------------------PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFH  185 (323)
T ss_dssp             ---------------------------GGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBC
T ss_pred             ---------------------------hHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCC
Confidence                                       88999999999999999999754322  112234568999999999987765 


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +.++||||+||++|+|++|..||.........................+++++.+||.+||+.||++|||++|+++||||
T Consensus       186 ~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~~  265 (323)
T 3tki_A          186 AEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWY  265 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTT
T ss_pred             CCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCccccCCHHHHHHHHHHccCChhhCcCHHHHhhChhh
Confidence            77899999999999999999999765443222211111112222345689999999999999999999999999999999


Q ss_pred             hhcc
Q psy3253         239 QRHD  242 (251)
Q Consensus       239 ~~~~  242 (251)
                      ++..
T Consensus       266 ~~~~  269 (323)
T 3tki_A          266 NKPL  269 (323)
T ss_dssp             TCCC
T ss_pred             cccc
Confidence            8643

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=2.6e-43  Score=325.75  Aligned_cols=204  Identities=25%  Similarity=0.420  Sum_probs=181.9

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||+|++++++|++...+|+||||++||+|.++++. ...+++..++.++.||+.||.|||++||+|||||         
T Consensus       400 ~~~~i~~l~~~~~~~~~~~lV~E~~~gg~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLK---------  469 (674)
T 3pfq_A          400 KPPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQ-VGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLK---------  469 (674)
T ss_dssp             CCTTBCCEEEECBCSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCC---------
T ss_pred             CCCeEEEEEEEEEeCCEEEEEEeCcCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCC---------
Confidence            799999999999999999999999999999999974 4679999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhH
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADM  164 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  164 (251)
                                              |+||+++.++++||+|||+++.............||+.|+|||++.+..++.++|+
T Consensus       470 ------------------------p~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~Dv  525 (674)
T 3pfq_A          470 ------------------------LDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDW  525 (674)
T ss_dssp             ------------------------STTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHH
T ss_pred             ------------------------hhhEEEcCCCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceE
Confidence                                    88999999999999999999764433344455678999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH-----HHHhcChhhh
Q psy3253         165 WSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA-----SEMLNHEFIQ  239 (251)
Q Consensus       165 wslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~-----~evl~hp~~~  239 (251)
                      |||||++|+|++|.+||.+.+.......+....   ...+..+++++.+||.+||+.||++||++     +|+++||||+
T Consensus       526 wSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~---~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~ff~  602 (674)
T 3pfq_A          526 WAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHN---VAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFR  602 (674)
T ss_dssp             HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSC---CCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGGGS
T ss_pred             echHHHHHHHHcCCCCCCCCCHHHHHHHHHhCC---CCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcCcccc
Confidence            999999999999999998887777666655542   23356789999999999999999999998     9999999999


Q ss_pred             hccCCC
Q psy3253         240 RHDTDP  245 (251)
Q Consensus       240 ~~~~~~  245 (251)
                      ..+|+.
T Consensus       603 ~i~w~~  608 (674)
T 3pfq_A          603 YIDWEK  608 (674)
T ss_dssp             SCCHHH
T ss_pred             CCCHHH
Confidence            988864

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=1.7e-43  Score=296.88  Aligned_cols=210  Identities=44%  Similarity=0.880  Sum_probs=175.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++..+...++||||+++++|.+++......+++..+..++.|++.||.|||++|++|||||      
T Consensus        71 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk------  144 (302)
T 2j7t_A           71 ATCDHPYIVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLK------  144 (302)
T ss_dssp             HHCCCTTBCCEEEEEECC-CEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS------
T ss_pred             hcCCCCCEeeeeeeeeeCCeEEEEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCC------
Confidence            46799999999999999999999999999999999998667889999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccc-----ccC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI-----QEI  156 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~-----~~~  156 (251)
                                                 |+||+++.++.++|+|||++..............+++.|+|||.+     ...
T Consensus       145 ---------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  197 (302)
T 2j7t_A          145 ---------------------------AGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDT  197 (302)
T ss_dssp             ---------------------------GGGEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTST
T ss_pred             ---------------------------HHHEEECCCCCEEEEECCCCccccccccccccccCChhhcCCeeeccccCCCC
Confidence                                       889999999999999999875433222223345678999999998     356


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         157 GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       157 ~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      .++.++||||||+++|+|++|..||...+.......+.....+....+..++.++.++|.+||..||++|||++|+++||
T Consensus       198 ~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~  277 (302)
T 2j7t_A          198 PYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHP  277 (302)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTST
T ss_pred             CCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCccccCHHHHHHHHHHcccChhhCCCHHHHhcCh
Confidence            78899999999999999999999998776655544443333333344567899999999999999999999999999999


Q ss_pred             hhhhccCC
Q psy3253         237 FIQRHDTD  244 (251)
Q Consensus       237 ~~~~~~~~  244 (251)
                      ||+...+.
T Consensus       278 ~~~~~~~~  285 (302)
T 2j7t_A          278 FVSSITSN  285 (302)
T ss_dssp             TTTTCCCC
T ss_pred             HHhhhccc
Confidence            99987654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=5.8e-43  Score=311.32  Aligned_cols=203  Identities=30%  Similarity=0.518  Sum_probs=176.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....|+||||+.+|+|.+++. ..+.+++..++.++.||+.||.|||++|++|||||     
T Consensus        70 l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~gg~L~~~l~-~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLk-----  143 (476)
T 2y94_A           70 LKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYIC-KNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLK-----  143 (476)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCSSEEHHHHTT-SSSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCS-----
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEeCCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCCCccccc-----
Confidence            467899999999999999999999999999999999986 45789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC-C
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY-D  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~  159 (251)
                                                  |+||+++.++.+||+|||++...... .......||+.|+|||++.+..+ +
T Consensus       144 ----------------------------p~NIll~~~~~vkL~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~  194 (476)
T 2y94_A          144 ----------------------------PENVLLDAHMNAKIADFGLSNMMSDG-EFLRTSCGSPNYAAPEVISGRLYAG  194 (476)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCCSSCEECCTT-CCBCCCCSCSTTCCHHHHTTCCBCS
T ss_pred             ----------------------------HHHEEEecCCCeEEEeccchhhcccc-ccccccCCCcCeEChhhccCCCCCC
Confidence                                        88999999999999999999765433 22334568999999999988765 6


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ  239 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~  239 (251)
                      .++||||+||++|+|++|..||.+.+.......+....   ...+..+++++.+||.+||+.||++|||++|+++||||+
T Consensus       195 ~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~---~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~hp~~~  271 (476)
T 2y94_A          195 PEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGI---FYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFK  271 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTC---CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHH
T ss_pred             CcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCC---cCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHhCHHhh
Confidence            89999999999999999999998776655555544432   233566899999999999999999999999999999998


Q ss_pred             hc
Q psy3253         240 RH  241 (251)
Q Consensus       240 ~~  241 (251)
                      ..
T Consensus       272 ~~  273 (476)
T 2y94_A          272 QD  273 (476)
T ss_dssp             TT
T ss_pred             hc
Confidence            64

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=6.8e-43  Score=289.89  Aligned_cols=211  Identities=27%  Similarity=0.529  Sum_probs=175.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++||||+++++|.+++. ....+++..+..++.|++.||.|||++|++|||||     
T Consensus        60 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlk-----  133 (277)
T 3f3z_A           60 MKSLDHPNIIRLYETFEDNTDIYLVMELCTGGELFERVV-HKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLK-----  133 (277)
T ss_dssp             HHTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HHhCCCCCEeeEEEEEecCCeEEEEEeccCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCC-----
Confidence            357899999999999999999999999999999999987 45679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceec---CCCCCeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL---NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~---~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||++   +.++.++|+|||++...... .......+|+.|+|||.+.+. 
T Consensus       134 ----------------------------p~Nil~~~~~~~~~~~l~Dfg~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~-  183 (277)
T 3f3z_A          134 ----------------------------PENFLFLTDSPDSPLKLIDFGLAARFKPG-KMMRTKVGTPYYVSPQVLEGL-  183 (277)
T ss_dssp             ----------------------------GGGEEESSSSTTCCEEECCCTTCEECCTT-SCBCCCCSCTTTCCHHHHTTC-
T ss_pred             ----------------------------HHHEEEecCCCCCcEEEEecccceeccCc-cchhccCCCCCccChHHhccc-
Confidence                                        778887   67788999999999765433 233345689999999998664 


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCC-CCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPP-SFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      ++.++||||+|+++|+|++|..||...........+...... .......+++++.+++.+||+.||++|||++|+++||
T Consensus       184 ~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~  263 (277)
T 3f3z_A          184 YGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEHE  263 (277)
T ss_dssp             BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSH
T ss_pred             CCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcCH
Confidence            899999999999999999999999877665555444333211 1111236799999999999999999999999999999


Q ss_pred             hhhhccCCCCC
Q psy3253         237 FIQRHDTDPSQ  247 (251)
Q Consensus       237 ~~~~~~~~~~~  247 (251)
                      ||++....+.+
T Consensus       264 ~~~~~~~~~~~  274 (277)
T 3f3z_A          264 WFEKQLSSSPR  274 (277)
T ss_dssp             HHHHHHCCSGG
T ss_pred             HHhcccccccc
Confidence            99987665543

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=7.8e-43  Score=290.35  Aligned_cols=210  Identities=26%  Similarity=0.414  Sum_probs=176.4

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...++||||+.+++|.+++. ....+++..+..++.|++.||.|||++|++|||||      
T Consensus        60 ~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dik------  132 (284)
T 3kk8_A           60 RKLQHPNIVRLHDSIQEESFHYLVFDLVTGGELFEDIV-AREFYSEADASHCIQQILESIAYCHSNGIVHRNLK------  132 (284)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC------
T ss_pred             HHcCCCCcCeEEEEEEcCCEEEEEEecCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCC------
Confidence            46799999999999999999999999999999999887 34679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCC---eEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH---AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~---~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                 |+||+++.++.   ++|+|||.+...... .......+++.|+|||.+.+..+
T Consensus       133 ---------------------------p~Nil~~~~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~  184 (284)
T 3kk8_A          133 ---------------------------PENLLLASKAKGAAVKLADFGLAIEVNDS-EAWHGFAGTPGYLSPEVLKKDPY  184 (284)
T ss_dssp             ---------------------------GGGEEESSSSTTCCEEECCCTTCEECCSS-CBCCCSCSCGGGCCHHHHTTCCB
T ss_pred             ---------------------------HHHEEEecCCCCCcEEEeeceeeEEcccC-ccccCCCCCcCCcCchhhcCCCC
Confidence                                       77888865544   999999999765433 22234568999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++||||+|+++|+|++|..||.+.+.......+... ..........+++++.+++.+||+.||++|||++|+++|||
T Consensus       185 ~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~  264 (284)
T 3kk8_A          185 SKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPW  264 (284)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTSHH
T ss_pred             CcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhcCcc
Confidence            99999999999999999999999877665554443222 11222234578999999999999999999999999999999


Q ss_pred             hhhccCCCC
Q psy3253         238 IQRHDTDPS  246 (251)
Q Consensus       238 ~~~~~~~~~  246 (251)
                      |+...+...
T Consensus       265 ~~~~~~~~~  273 (284)
T 3kk8_A          265 ICNRERVAS  273 (284)
T ss_dssp             HHSCCCGGG
T ss_pred             ccCChhHHh
Confidence            998766543

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=1.6e-42  Score=290.22  Aligned_cols=207  Identities=29%  Similarity=0.528  Sum_probs=178.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...++||||+++++|.+++. ....+++..+..++.|++.||.|||++|++|||||      
T Consensus        70 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~------  142 (294)
T 2rku_A           70 RSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHK-RRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLK------  142 (294)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC------
T ss_pred             HhCCCCCEeeeeeeeccCCEEEEEEecCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC------
Confidence            57899999999999999999999999999999999886 44689999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||.+..............+++.|+|||.+.+..++.+
T Consensus       143 ---------------------------p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  195 (294)
T 2rku_A          143 ---------------------------LGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFE  195 (294)
T ss_dssp             ---------------------------GGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTH
T ss_pred             ---------------------------hHhEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCcchhccCCCCch
Confidence                                       88999999999999999999765533333444568899999999998889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +|+||+|+++|+|++|..||...........+...   ....+..+++.+.+++.+||+.||++|||++|+++||||+..
T Consensus       196 ~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~~~~~~  272 (294)
T 2rku_A          196 VDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN---EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSG  272 (294)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTT---CCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTS
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhc---cCCCccccCHHHHHHHHHHcccChhhCcCHHHHhhChheecC
Confidence            99999999999999999999876655544433332   223356789999999999999999999999999999999876


Q ss_pred             cCCC
Q psy3253         242 DTDP  245 (251)
Q Consensus       242 ~~~~  245 (251)
                      ...+
T Consensus       273 ~~~~  276 (294)
T 2rku_A          273 YIPA  276 (294)
T ss_dssp             CCCS
T ss_pred             CcCC
Confidence            6544

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=8.2e-43  Score=298.65  Aligned_cols=205  Identities=30%  Similarity=0.442  Sum_probs=169.0

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||||+++++++.++...|+||||++||+|.+++. ....+++..+..++.||+.||.|||++|++|||||         
T Consensus        74 ~hp~iv~~~~~~~~~~~~~lv~E~~~gg~L~~~i~-~~~~~~~~~~~~~~~qi~~al~~lH~~givHrDlk---------  143 (342)
T 2qr7_A           74 QHPNIITLKDVYDDGKYVYVVTELMKGGELLDKIL-RQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLK---------  143 (342)
T ss_dssp             TSTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-TCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC---------
T ss_pred             CCCCcCeEEEEEEcCCEEEEEEeCCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCC---------
Confidence            79999999999999999999999999999999997 55789999999999999999999999999999999         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCC-C---CCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-E---GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~-~---~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                              |+||++.. +   +.+||+|||++..............+|+.|+|||++.+..++.
T Consensus       144 ------------------------p~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  199 (342)
T 2qr7_A          144 ------------------------PSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDA  199 (342)
T ss_dssp             ------------------------GGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHH
T ss_pred             ------------------------HHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCC
Confidence                                    77777532 2   3499999999986654433444556899999999998888899


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCC---CcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDI---HPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      ++|+||+||++|+|++|..||.+.   ........+... .......+..+++++.+||.+||..||++|||++|+++||
T Consensus       200 ~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp  279 (342)
T 2qr7_A          200 ACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHP  279 (342)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSH
T ss_pred             ccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCC
Confidence            999999999999999999999653   222222222222 1111123456899999999999999999999999999999


Q ss_pred             hhhhccC
Q psy3253         237 FIQRHDT  243 (251)
Q Consensus       237 ~~~~~~~  243 (251)
                      ||...+.
T Consensus       280 ~~~~~~~  286 (342)
T 2qr7_A          280 WIVHWDQ  286 (342)
T ss_dssp             HHHTGGG
T ss_pred             eecCccc
Confidence            9976543

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-43  Score=295.27  Aligned_cols=207  Identities=26%  Similarity=0.409  Sum_probs=164.7

Q ss_pred             CCCCccceeeeeEeeCC-----eEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           4 CDSPYVVKYYGSYFKNT-----DLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~-----~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      ++||||+++++++....     ..+++|||+. ++|.+++.... ..+++..++.++.|++.||.|||++|++|||||  
T Consensus        71 ~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlk--  147 (308)
T 3g33_A           71 FEHPNVVRLMDVCATSRTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLK--  147 (308)
T ss_dssp             HCCTTBCCEEEEEEECCSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC--
T ss_pred             cCCCCeEEeeeeeeccCCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC--
Confidence            46999999999998754     5899999996 59999997433 349999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                     |+||+++.++.+||+|||++...... .......+|+.|+|||++.+..
T Consensus       148 -------------------------------p~Nil~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~  195 (308)
T 3g33_A          148 -------------------------------PENILVTSGGTVKLADFGLARIYSYQ-MALTPVVVTLWYRAPEVLLQST  195 (308)
T ss_dssp             -------------------------------TTTEEECTTSCEEECSCSCTTTSTTC-CCSGGGGCCCSSCCHHHHHTSC
T ss_pred             -------------------------------HHHEEEcCCCCEEEeeCccccccCCC-cccCCccccccccCchHHcCCC
Confidence                                           88899988999999999999765433 2334456899999999999989


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC----CCCCCC--------------------CCCCCCCHHHHH
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT----KPPPSF--------------------REPDVWTPEFID  213 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~----~~~~~~--------------------~~~~~~~~~~~~  213 (251)
                      ++.++||||+||++|+|++|.+||.+.+.......+..    .....+                    .....+++++.+
T Consensus       196 ~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (308)
T 3g33_A          196 YATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQ  275 (308)
T ss_dssp             CCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHH
Confidence            99999999999999999999999977655444332211    000000                    012357899999


Q ss_pred             HHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         214 FVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       214 li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      ||.+||+.||++|||++|+|+||||++.+.++
T Consensus       276 li~~~L~~dP~~R~t~~e~l~h~~~~~~~~~~  307 (308)
T 3g33_A          276 LLLEMLTFNPHKRISAFRALQHSYLHKDEGNP  307 (308)
T ss_dssp             HHHHHTCSSTTTSCCHHHHHTSTTC-------
T ss_pred             HHHHHhcCCCccCCCHHHHhcCccccCCCCCC
Confidence            99999999999999999999999999876544

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=7.2e-43  Score=301.06  Aligned_cols=204  Identities=29%  Similarity=0.471  Sum_probs=159.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....|+||||+.+|+|.+++. ..+.+++..++.++.|++.||.|||++|++|||||      
T Consensus        71 ~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlk------  143 (361)
T 3uc3_A           71 RSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERIC-NAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLK------  143 (361)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCC------
T ss_pred             HhCCCCCCCcEEEEEeeCCEEEEEEEeCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC------
Confidence            46899999999999999999999999999999999997 34679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCC--eEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH--AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                 |+||+++.++.  +||+|||+++..... .......||+.|+|||++.+..++
T Consensus       144 ---------------------------p~Nill~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~  195 (361)
T 3uc3_A          144 ---------------------------LENTLLDGSPAPRLKICDFGYSKSSVLH-SQPKSTVGTPAYIAPEVLLRQEYD  195 (361)
T ss_dssp             ---------------------------GGGEEECSSSSCCEEECCCCCC----------------CTTSCHHHHHCSSCC
T ss_pred             ---------------------------HHHEEEcCCCCceEEEeecCcccccccc-CCCCCCcCCCCcCChhhhcCCCCC
Confidence                                       88888876665  999999998743322 223345689999999999887776


Q ss_pred             cc-hhHHHHHHHHHHHHhCCCCCCCCCcchh----hhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         160 CV-ADMWSLGITALEMAEGKPPYGDIHPMRA----IFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       160 ~~-~DvwslG~~l~~l~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .+ +||||+||++|+|++|..||.+......    ...+... .........+++++.+||.+||+.||++|||++|+++
T Consensus       196 ~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~  274 (361)
T 3uc3_A          196 GKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSV-KYSIPDDIRISPECCHLISRIFVADPATRISIPEIKT  274 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTT-CCCCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             CCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcC-CCCCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHh
Confidence            65 8999999999999999999976443221    1111111 1222334467999999999999999999999999999


Q ss_pred             Chhhhhc
Q psy3253         235 HEFIQRH  241 (251)
Q Consensus       235 hp~~~~~  241 (251)
                      ||||.+.
T Consensus       275 hp~f~~~  281 (361)
T 3uc3_A          275 HSWFLKN  281 (361)
T ss_dssp             SHHHHTT
T ss_pred             CcchhcC
Confidence            9999654

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=7.2e-43  Score=299.72  Aligned_cols=209  Identities=26%  Similarity=0.364  Sum_probs=165.4

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+++|+|.+++. ....+++.+++.++.|++.||.|||++|++|||||      
T Consensus       103 ~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dik------  175 (349)
T 2w4o_A          103 LRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIV-EKGYYSERDAADAVKQILEAVAYLHENGIVHRDLK------  175 (349)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHT-TCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC------
T ss_pred             HhCCCCCCcceeeeEecCCeEEEEEEeCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCC------
Confidence            46799999999999999999999999999999999986 45679999999999999999999999999999998      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCC---CCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~---~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                 |+||+++.   ++.+||+|||++...... .......||+.|+|||++.+..+
T Consensus       176 ---------------------------p~NIll~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~  227 (349)
T 2w4o_A          176 ---------------------------PENLLYATPAPDAPLKIADFGLSKIVEHQ-VLMKTVCGTPGYCAPEILRGCAY  227 (349)
T ss_dssp             ---------------------------GGGEEESSSSTTCCEEECCCC-----------------CGGGSCHHHHTTCCC
T ss_pred             ---------------------------cccEEEecCCCCCCEEEccCccccccCcc-cccccccCCCCccCHHHhcCCCC
Confidence                                       77777764   788999999999765432 22234568999999999999899


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcch-hhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMR-AIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      +.++|||||||++|+|++|..||.+..... ....+... ..........++.++.+||.+||+.||++|||++|+++||
T Consensus       228 ~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp  307 (349)
T 2w4o_A          228 GPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHP  307 (349)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHST
T ss_pred             CcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcCc
Confidence            999999999999999999999997655443 22222222 1111223456899999999999999999999999999999


Q ss_pred             hhhhccCCC
Q psy3253         237 FIQRHDTDP  245 (251)
Q Consensus       237 ~~~~~~~~~  245 (251)
                      ||+....+.
T Consensus       308 ~~~~~~~~~  316 (349)
T 2w4o_A          308 WVTGKAANF  316 (349)
T ss_dssp             TTTSTTCCC
T ss_pred             ccCCCccch
Confidence            998766543

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.4e-43  Score=297.22  Aligned_cols=210  Identities=24%  Similarity=0.441  Sum_probs=166.4

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+++++|.+++. ....+++..+..++.|++.||.|||++|++|||||      
T Consensus        57 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~-~~~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlk------  129 (311)
T 4agu_A           57 KQLKHPNLVNLLEVFRRKRRLHLVFEYCDHTVLHELDR-YQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVK------  129 (311)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS------
T ss_pred             HhCCCCCccchhheeecCCeEEEEEEeCCCchHHHHHh-hhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCC------
Confidence            46899999999999999999999999999999988876 56779999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~  160 (251)
                                                 |+||+++.++.++|+|||++..............+++.|+|||++.+ ..++.
T Consensus       130 ---------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  182 (311)
T 4agu_A          130 ---------------------------PENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGP  182 (311)
T ss_dssp             ---------------------------GGGEEECTTSCEEECCCTTCEECC------------GGGCCHHHHHTCSCCCT
T ss_pred             ---------------------------hhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccChHHHhcCCCCCc
Confidence                                       88999999999999999999766544333445568899999999975 66899


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---------------------CCCCCCCC-------CCCCCCHHHH
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---------------------TKPPPSFR-------EPDVWTPEFI  212 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---------------------~~~~~~~~-------~~~~~~~~~~  212 (251)
                      ++||||+|+++|++++|..||.+.........+.                     ....+...       ....+++++.
T Consensus       183 ~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
T 4agu_A          183 PVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPAL  262 (311)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHH
T ss_pred             chhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccccHHHH
Confidence            9999999999999999999997765443322110                     00000000       0145788999


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      +++.+||+.||++|||++|+++||||++..+..
T Consensus       263 ~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~~  295 (311)
T 4agu_A          263 GLLKGCLHMDPTERLTCEQLLHHPYFENIREIE  295 (311)
T ss_dssp             HHHHHHCCSSTTTSCCHHHHHTSGGGTTCC---
T ss_pred             HHHHHHccCChhhcCCHHHHhcChHHHhccCHH
Confidence            999999999999999999999999999876654

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=2.7e-42  Score=288.19  Aligned_cols=204  Identities=30%  Similarity=0.537  Sum_probs=167.3

Q ss_pred             CCCCCCCccceeeeeEee----CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR--KIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~----~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~--iiH~di   74 (251)
                      |++++||||+++++++..    +...++||||+++++|.+++. ....+++..++.++.|++.||.|||++|  ++||||
T Consensus        79 l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~di  157 (290)
T 1t4h_A           79 LKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK-RFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDL  157 (290)
T ss_dssp             HTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCC
T ss_pred             HHhCCCCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHHH-HccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCC
Confidence            467899999999999875    456899999999999999997 4467999999999999999999999999  999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecC-CCCCeEecccccccccCccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~-~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  153 (251)
                      |                                 |+||+++ .++.++|+|||++......  ......+++.|+|||++
T Consensus       158 k---------------------------------p~Nil~~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~t~~y~aPE~~  202 (290)
T 1t4h_A          158 K---------------------------------CDNIFITGPTGSVKIGDLGLATLKRAS--FAKAVIGTPEFMAPEMY  202 (290)
T ss_dssp             C---------------------------------GGGEEESSTTSCEEECCTTGGGGCCTT--SBEESCSSCCCCCGGGG
T ss_pred             C---------------------------------HHHEEEECCCCCEEEeeCCCccccccc--ccccccCCcCcCCHHHH
Confidence            8                                 8899987 7889999999999654332  22334688999999988


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         154 QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       154 ~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      .+ .++.++||||+||++|+|++|..||......................+...++++.++|.+||+.||++|||++|++
T Consensus       203 ~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell  281 (290)
T 1t4h_A          203 EE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL  281 (290)
T ss_dssp             GT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred             hc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCccccCCCCCHHHHHHHHHHccCChhhCCCHHHHh
Confidence            64 58999999999999999999999997654443332222222222223456789999999999999999999999999


Q ss_pred             cChhhhhc
Q psy3253         234 NHEFIQRH  241 (251)
Q Consensus       234 ~hp~~~~~  241 (251)
                      +||||++.
T Consensus       282 ~h~~f~~~  289 (290)
T 1t4h_A          282 NHAFFQEE  289 (290)
T ss_dssp             TSGGGC--
T ss_pred             hCcccccC
Confidence            99999863

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=1.6e-42  Score=295.69  Aligned_cols=206  Identities=30%  Similarity=0.530  Sum_probs=177.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....|+||||+++++|.+++. ....+++.+++.++.||+.||.|||++|++|||||      
T Consensus        96 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk------  168 (335)
T 2owb_A           96 RSLAHQHVVGFHGFFEDNDFVFVVLELCRRRSLLELHK-RRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLK------  168 (335)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC------
T ss_pred             HhCCCCCCCeEEEEEecCCeEEEEEecCCCCCHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCC------
Confidence            57899999999999999999999999999999999987 44689999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||++..............+++.|+|||++.+..++.+
T Consensus       169 ---------------------------p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  221 (335)
T 2owb_A          169 ---------------------------LGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFE  221 (335)
T ss_dssp             ---------------------------GGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTH
T ss_pred             ---------------------------chhEEEcCCCCEEEeeccCceecccCcccccccCCCccccCHHHhccCCCCch
Confidence                                       88999999999999999999766533333444568899999999998889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +||||||+++|+|++|..||...........+...   ....+..+++++.++|.+||+.||++|||++|+++||||+..
T Consensus       222 ~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~~~~~~~  298 (335)
T 2owb_A          222 VDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN---EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSG  298 (335)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHT---CCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTS
T ss_pred             hhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcC---CCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCccccCC
Confidence            99999999999999999999776554444333222   222356789999999999999999999999999999999876


Q ss_pred             cCC
Q psy3253         242 DTD  244 (251)
Q Consensus       242 ~~~  244 (251)
                      ...
T Consensus       299 ~~~  301 (335)
T 2owb_A          299 YIP  301 (335)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            543

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=2.4e-42  Score=287.73  Aligned_cols=205  Identities=23%  Similarity=0.450  Sum_probs=176.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+++++|.+++.. ...+++..+..++.|++.||.|||++|++|||||      
T Consensus        69 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~------  141 (284)
T 2vgo_A           69 SHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQK-HGRFDEQRSATFMEELADALHYCHERKVIHRDIK------  141 (284)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCS------
T ss_pred             hcCCCCCEeeEEEEEEcCCEEEEEEEeCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC------
Confidence            578999999999999999999999999999999999974 4579999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||++......  ......+++.|+|||.+.+..++.+
T Consensus       142 ---------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~  192 (284)
T 2vgo_A          142 ---------------------------PENLLMGYKGELKIADFGWSVHAPSL--RRRTMCGTLDYLPPEMIEGKTHDEK  192 (284)
T ss_dssp             ---------------------------GGGEEECTTCCEEECCCTTCEECSSS--CBCCCCSCGGGCCHHHHTTCCBCTT
T ss_pred             ---------------------------HHHEEEcCCCCEEEecccccccCccc--ccccccCCCCcCCHHHhccCCCCcc
Confidence                                       88999999999999999998654432  2234567899999999999889999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +|+||+|+++|++++|..||...........+...   ....+..+++++.++|.+||..||++|||++|+++||||+..
T Consensus       193 ~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h~~~~~~  269 (284)
T 2vgo_A          193 VDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNV---DLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPWVKAN  269 (284)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTT---CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTCHHHHHH
T ss_pred             cchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhcc---ccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhCHHHHhh
Confidence            99999999999999999999876655544433332   122356689999999999999999999999999999999876


Q ss_pred             cCCC
Q psy3253         242 DTDP  245 (251)
Q Consensus       242 ~~~~  245 (251)
                      ....
T Consensus       270 ~~~~  273 (284)
T 2vgo_A          270 SRRV  273 (284)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            5443

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.2e-42  Score=294.14  Aligned_cols=196  Identities=27%  Similarity=0.423  Sum_probs=168.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCC-CHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAG-SVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~g-sL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.+....++||||+.+| +|.+++. ....+++..+..++.||+.||.|||++|++|||||    
T Consensus        83 l~~l~h~~Iv~~~~~~~~~~~~~lv~e~~~~g~~l~~~~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk----  157 (335)
T 3dls_A           83 LSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFID-RHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIK----  157 (335)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCTTSCBHHHHHH-TCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS----
T ss_pred             HHhCCCCCEeeEEEEEeeCCEEEEEEEeCCCCccHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccC----
Confidence            46789999999999999999999999999766 9999987 55689999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC-
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY-  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-  158 (251)
                                                   |+||+++.++.+||+|||++...... .......||+.|+|||++.+..+ 
T Consensus       158 -----------------------------p~NIll~~~~~~kL~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~  207 (335)
T 3dls_A          158 -----------------------------DENIVIAEDFTIKLIDFGSAAYLERG-KLFYTFCGTIEYCAPEVLMGNPYR  207 (335)
T ss_dssp             -----------------------------GGGEEECTTSCEEECCCTTCEECCTT-CCBCEECSCGGGCCHHHHTTCCBC
T ss_pred             -----------------------------HHHEEEcCCCcEEEeecccceECCCC-CceeccCCCccccChhhhcCCCCC
Confidence                                         88999999999999999999765433 22334568999999999988776 


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +.++|||||||++|+|++|..||.......      .   .....+..+++++.++|.+||+.||++|||++|+++||||
T Consensus       208 ~~~~DiwslG~il~el~~g~~pf~~~~~~~------~---~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~hp~~  278 (335)
T 3dls_A          208 GPELEMWSLGVTLYTLVFEENPFCELEETV------E---AAIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTDPWV  278 (335)
T ss_dssp             SHHHHHHHHHHHHHHHHHSSCSCSSGGGGT------T---TCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHCTTT
T ss_pred             CCcccchhHHHHHHHHHhCCCchhhHHHHH------h---hccCCCcccCHHHHHHHHHHccCChhhCcCHHHHhcCccc
Confidence            789999999999999999999997533211      1   1222355689999999999999999999999999999999


Q ss_pred             hh
Q psy3253         239 QR  240 (251)
Q Consensus       239 ~~  240 (251)
                      ++
T Consensus       279 ~~  280 (335)
T 3dls_A          279 TQ  280 (335)
T ss_dssp             TC
T ss_pred             cC
Confidence            75

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=6.4e-43  Score=312.12  Aligned_cols=208  Identities=26%  Similarity=0.496  Sum_probs=176.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....|+||||+.+|+|.+++. ....+++..+..++.||+.||.|||++|++|||||     
T Consensus        80 l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlk-----  153 (484)
T 3nyv_A           80 LKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEII-SRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLK-----  153 (484)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-TCSCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HHhCCCCCCCcEEEEEEeCCEEEEEEecCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC-----
Confidence            468899999999999999999999999999999999987 56789999999999999999999999999999998     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceec---CCCCCeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL---NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~---~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||++   +.++.+||+|||++....... ......||+.|+|||++.+ .
T Consensus       154 ----------------------------p~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~-~  203 (484)
T 3nyv_A          154 ----------------------------PENLLLESKSKDANIRIIDFGLSTHFEASK-KMKDKIGTAYYIAPEVLHG-T  203 (484)
T ss_dssp             ----------------------------GGGEEESSSSTTCCEEECCTTHHHHBCCCC-SHHHHTTGGGTCCHHHHHT-C
T ss_pred             ----------------------------HHHEEEecCCCCCcEEEEeeeeeEEccccc-ccccCCCCccccCceeecC-C
Confidence                                        777777   456789999999997654332 2334568999999999866 6


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      ++.++||||+||++|+|++|.+||.+.+.......+.... ....+.+..+++++.+||.+||+.||++|||++|+|+||
T Consensus       204 ~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~  283 (484)
T 3nyv_A          204 YDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHE  283 (484)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSH
T ss_pred             CCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhCh
Confidence            8999999999999999999999998877666555443332 222233456899999999999999999999999999999


Q ss_pred             hhhhccCC
Q psy3253         237 FIQRHDTD  244 (251)
Q Consensus       237 ~~~~~~~~  244 (251)
                      ||+...++
T Consensus       284 ~~~~~~~~  291 (484)
T 3nyv_A          284 WIQTYTKE  291 (484)
T ss_dssp             HHHHHTC-
T ss_pred             hhcccccc
Confidence            99987653

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=2.4e-42  Score=301.63  Aligned_cols=207  Identities=29%  Similarity=0.414  Sum_probs=162.8

Q ss_pred             CCCCCccceeeeeEee----CCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           3 QCDSPYVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~----~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      ..+||||++++++|..    ...+|+||||+.||+|.+++.... ..+++..++.++.||+.||.|||++||+|||||  
T Consensus       111 ~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk--  188 (400)
T 1nxk_A          111 ASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVK--  188 (400)
T ss_dssp             HTTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCC--
T ss_pred             hcCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcC--
Confidence            3589999999999876    567999999999999999997432 469999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCC---CCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~---~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                                                     |+||+++.   ++.+||+|||+++..... .......+|+.|+|||++.
T Consensus       189 -------------------------------p~Nill~~~~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~  236 (400)
T 1nxk_A          189 -------------------------------PENLLYTSKRPNAILKLTDFGFAKETTSH-NSLTTPCYTPYYVAPEVLG  236 (400)
T ss_dssp             -------------------------------GGGEEESSSSTTCCEEECCCTTCEECC------------CTTCCGGGSC
T ss_pred             -------------------------------cceEEEecCCCCccEEEEecccccccCCC-CccccCCCCCCccCHhhcC
Confidence                                           88888876   688999999999765432 2233456799999999999


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh----hhhcC-CCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA----IFMIP-TKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                      +..++.++|||||||++|+|++|..||.+......    ...+. .........+..+++++.+||.+||+.||++|||+
T Consensus       237 ~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~  316 (400)
T 1nxk_A          237 PEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTI  316 (400)
T ss_dssp             CCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCH
T ss_pred             CCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChhHCcCH
Confidence            99999999999999999999999999965433221    11111 11111122245689999999999999999999999


Q ss_pred             HHHhcChhhhhccC
Q psy3253         230 SEMLNHEFIQRHDT  243 (251)
Q Consensus       230 ~evl~hp~~~~~~~  243 (251)
                      +|+++||||.....
T Consensus       317 ~eil~hp~~~~~~~  330 (400)
T 1nxk_A          317 TEFMNHPWIMQSTK  330 (400)
T ss_dssp             HHHHHSHHHHTTTT
T ss_pred             HHHhcCccccCCCC
Confidence            99999999986543

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=9e-43  Score=313.95  Aligned_cols=207  Identities=27%  Similarity=0.416  Sum_probs=176.5

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      ++++||||++++++|.+...+|+||||++||+|.+++...   ...+++..++.++.||+.||.|||++||+|||||   
T Consensus       240 ~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLK---  316 (543)
T 3c4z_A          240 AKVHSRFIVSLAYAFETKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLK---  316 (543)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC---
T ss_pred             HhcCCCCEeeEEEEEeeCCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCC---
Confidence            4679999999999999999999999999999999998743   3469999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                    |+||+++.++++||+|||+++.............||+.|+|||++.+..+
T Consensus       317 ------------------------------P~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~  366 (543)
T 3c4z_A          317 ------------------------------PENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEY  366 (543)
T ss_dssp             ------------------------------GGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCB
T ss_pred             ------------------------------hHHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccChhhhcCCCC
Confidence                                          99999999999999999999876544333444578999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCc----chhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----H
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHP----MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----A  229 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~  229 (251)
                      +.++|+||+||++|+|++|.+||.+...    ......+...   ....+..+++++.++|.+||+.||++||+     +
T Consensus       367 ~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~---~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a  443 (543)
T 3c4z_A          367 DFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQ---AVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSC  443 (543)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHC---CCCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBS
T ss_pred             ChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhc---ccCCCcccCHHHHHHHHHhccCCHhHCCCCcccCH
Confidence            9999999999999999999999976532    2222222222   12235678999999999999999999996     5


Q ss_pred             HHHhcChhhhhccCC
Q psy3253         230 SEMLNHEFIQRHDTD  244 (251)
Q Consensus       230 ~evl~hp~~~~~~~~  244 (251)
                      +|+++||||+..+|.
T Consensus       444 ~ei~~Hpff~~i~w~  458 (543)
T 3c4z_A          444 DGLRTHPLFRDISWR  458 (543)
T ss_dssp             HHHHTSGGGTTCCHH
T ss_pred             HHHHcCccccCCCHH
Confidence            899999999998774

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=8.8e-43  Score=315.15  Aligned_cols=206  Identities=26%  Similarity=0.425  Sum_probs=174.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      ++++||||+++++++.+....|+||||++||+|.+++.... ..+++..++.++.||+.||.|||++||+|||||     
T Consensus       239 ~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLK-----  313 (576)
T 2acx_A          239 EKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLK-----  313 (576)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----
T ss_pred             HHcCCCCEeeEEEEEeeCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCc-----
Confidence            46899999999999999999999999999999999987433 359999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.+||+|||+++...... ......||+.|+|||++.+..++.
T Consensus       314 ----------------------------PeNILld~~g~vKL~DFGla~~~~~~~-~~~~~~GT~~Y~APEvl~~~~~~~  364 (576)
T 2acx_A          314 ----------------------------PENILLDDHGHIRISDLGLAVHVPEGQ-TIKGRVGTVGYMAPEVVKNERYTF  364 (576)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCTTCEECCTTC-CEECCCSCGGGCCHHHHTTCEESS
T ss_pred             ----------------------------hheEEEeCCCCeEEEecccceecccCc-cccccCCCccccCHHHHcCCCCCc
Confidence                                        899999999999999999997654332 223347899999999999888999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcc----hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHH
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPM----RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASE  231 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~e  231 (251)
                      ++|+||+||++|+|++|.+||.+....    .....+... +  ...+..+++++.+||.+||..||++||     +++|
T Consensus       365 ~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~-~--~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~e  441 (576)
T 2acx_A          365 SPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEV-P--EEYSERFSPQARSLCSQLLCKDPAERLGCRGGSARE  441 (576)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHC-C--CCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHH
T ss_pred             cchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcc-c--ccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHH
Confidence            999999999999999999999765321    112222211 1  123567899999999999999999999     8999


Q ss_pred             HhcChhhhhccCC
Q psy3253         232 MLNHEFIQRHDTD  244 (251)
Q Consensus       232 vl~hp~~~~~~~~  244 (251)
                      +++||||+..+|+
T Consensus       442 il~HpfF~~i~w~  454 (576)
T 2acx_A          442 VKEHPLFKKLNFK  454 (576)
T ss_dssp             HHTSGGGTTCCHH
T ss_pred             HHhChhhccCCHH
Confidence            9999999998774

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=1.9e-42  Score=309.23  Aligned_cols=208  Identities=27%  Similarity=0.488  Sum_probs=174.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....|+|||||.+|+|.+++.. ...+++..+..++.||+.||.|||++||+|||||      
T Consensus        76 ~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlk------  148 (486)
T 3mwu_A           76 KKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIK-RKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLK------  148 (486)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS------
T ss_pred             HhCCCCCcCeEEEEEEcCCEEEEEEEcCCCCcHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCc------
Confidence            568999999999999999999999999999999998873 4689999999999999999999999999999998      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecC---CCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN---TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~---~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                 |+||+++   .++.+||+|||++...... .......||+.|+|||++.+ .+
T Consensus       149 ---------------------------p~Nil~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~  199 (486)
T 3mwu_A          149 ---------------------------PENILLESKEKDCDIKIIDFGLSTCFQQN-TKMKDRIGTAYYIAPEVLRG-TY  199 (486)
T ss_dssp             ---------------------------GGGEEESSSSTTCCEEECSCSCTTTBCCC-----CCTTGGGGCCGGGGGS-CC
T ss_pred             ---------------------------hHHEEEecCCCCCCEEEEECCcCeECCCC-CccCCCcCCCCCCCHHHhCC-CC
Confidence                                       7777774   4557999999999765433 22334568999999999875 58


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++||||+||++|+|++|.+||.+.+.......+... .....+.+..+++++.+||.+||+.||++|||++|+|+|||
T Consensus       200 ~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp~  279 (486)
T 3mwu_A          200 DEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPW  279 (486)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCHH
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCHh
Confidence            99999999999999999999999887766555444332 22222334568999999999999999999999999999999


Q ss_pred             hhhccCCC
Q psy3253         238 IQRHDTDP  245 (251)
Q Consensus       238 ~~~~~~~~  245 (251)
                      |+......
T Consensus       280 ~~~~~~~~  287 (486)
T 3mwu_A          280 IQKYSSET  287 (486)
T ss_dssp             HHHTCCCC
T ss_pred             hccCcccC
Confidence            99876654

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=8.1e-43  Score=295.76  Aligned_cols=207  Identities=29%  Similarity=0.448  Sum_probs=174.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+++++|.+++. ....+++..+..++.|++.||.|||++|++|||||      
T Consensus        70 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dik------  142 (321)
T 2a2a_A           70 RQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLA-QKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLK------  142 (321)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-TCSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCS------
T ss_pred             HhCCCCCcceEEEEEecCCEEEEEEEcCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC------
Confidence            46899999999999999999999999999999999997 45679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCC----CeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG----HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                 |+||+++.++    .++|+|||++...... .......+|+.|+|||++.+..
T Consensus       143 ---------------------------p~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~  194 (321)
T 2a2a_A          143 ---------------------------PENIMLLDKNIPIPHIKLIDFGLAHEIEDG-VEFKNIFGTPEFVAPEIVNYEP  194 (321)
T ss_dssp             ---------------------------GGGEEESCTTSSSCCEEECCCTTCEECCTT-CCCCCCCSCGGGCCHHHHTTCC
T ss_pred             ---------------------------hHHEEEecCCCCcCCEEEccCccceecCcc-ccccccCCCCCccCcccccCCC
Confidence                                       8888887776    7999999999765543 2223446899999999999889


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC-CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP-PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      ++.++||||+||++|+|++|..||.+.........+..... .....+..+++.+.++|.+||..||++|||++|+++||
T Consensus       195 ~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~hp  274 (321)
T 2a2a_A          195 LGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRHP  274 (321)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHST
T ss_pred             CCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcCc
Confidence            99999999999999999999999987766555444333211 11111256789999999999999999999999999999


Q ss_pred             hhhhccC
Q psy3253         237 FIQRHDT  243 (251)
Q Consensus       237 ~~~~~~~  243 (251)
                      ||+..++
T Consensus       275 ~~~~~~~  281 (321)
T 2a2a_A          275 WITPVDN  281 (321)
T ss_dssp             TTSCSSH
T ss_pred             cccCCCc
Confidence            9987654

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.1e-42  Score=297.94  Aligned_cols=210  Identities=23%  Similarity=0.376  Sum_probs=172.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+++ +|.+++......+++..+..++.|++.||.|||++|++|||||      
T Consensus        67 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk------  139 (346)
T 1ua2_A           67 QELSHPNIIGLLDAFGHKSNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLK------  139 (346)
T ss_dssp             HHCCCTTBCCEEEEECCTTCCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCC------
T ss_pred             hhCCCCCCCeEEEEEeeCCceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCC------
Confidence            467899999999999999999999999975 8999887556679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~  160 (251)
                                                 |+||+++.++.+||+|||++..............+|+.|+|||++.+ ..++.
T Consensus       140 ---------------------------p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~  192 (346)
T 1ua2_A          140 ---------------------------PNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGV  192 (346)
T ss_dssp             ---------------------------GGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCH
T ss_pred             ---------------------------HHHEEEcCCCCEEEEecccceeccCCcccCCcccccccccCchHhhCCCCCCc
Confidence                                       88999999999999999999876544334445568999999999965 45889


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC----CCCCCCC---------------------CCCCCCHHHHHHH
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT----KPPPSFR---------------------EPDVWTPEFIDFV  215 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~----~~~~~~~---------------------~~~~~~~~~~~li  215 (251)
                      ++||||+||++|+|++|.+||.+.+.......+..    .....+.                     ....+++++.+||
T Consensus       193 ~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  272 (346)
T 1ua2_A          193 GVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLI  272 (346)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHH
T ss_pred             hhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHH
Confidence            99999999999999999999977655433322110    0000000                     0144678999999


Q ss_pred             HHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         216 SRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       216 ~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      .+||+.||++|||++|+++||||+...+..
T Consensus       273 ~~~L~~dP~~Rpt~~ell~h~~f~~~~~~~  302 (346)
T 1ua2_A          273 QGLFLFNPCARITATQALKMKYFSNRPGPT  302 (346)
T ss_dssp             HHHHCSSTTTSCCHHHHHTSGGGTSSSCCC
T ss_pred             HHHhccChhhCCCHHHHhcChhhhcCCCCC
Confidence            999999999999999999999998766554

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=6.5e-42  Score=286.98  Aligned_cols=211  Identities=45%  Similarity=0.834  Sum_probs=167.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH-------hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-------RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRD   73 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~-------~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~d   73 (251)
                      |++++||||+++++++......++||||+++++|.+++..       ....+++..+..++.||+.||.|||++|++|||
T Consensus        67 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~d  146 (303)
T 2vwi_A           67 MSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRD  146 (303)
T ss_dssp             CCCCCCTTBCCEEEEEESSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HhhcCCCCEeeEEEEEeecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            5678999999999999999999999999999999999963       245699999999999999999999999999999


Q ss_pred             CCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-----ccccccccccccc
Q psy3253          74 IKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-----AKRNTVIGTPFWM  148 (251)
Q Consensus        74 ik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~~~~~~~~~y~  148 (251)
                      ||                                 |+||+++.++.++|+|||++.......     .......+++.|+
T Consensus       147 l~---------------------------------p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~  193 (303)
T 2vwi_A          147 VK---------------------------------AGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWM  193 (303)
T ss_dssp             CS---------------------------------GGGEEECTTCCEEECCCHHHHHCC---------------CCCTTC
T ss_pred             CC---------------------------------hhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCcccc
Confidence            88                                 889999999999999999986543221     1123346788999


Q ss_pred             ccccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCC-------CCCCCCCCHHHHHHHHHhhh
Q psy3253         149 APEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPS-------FREPDVWTPEFIDFVSRCLV  220 (251)
Q Consensus       149 aPE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~li~~~l~  220 (251)
                      |||++.+ ..++.++|||||||++|+|++|..||...................       ......+++++.+++.+||+
T Consensus       194 aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  273 (303)
T 2vwi_A          194 APEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQ  273 (303)
T ss_dssp             CHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCCHHHHHHHHHHCC
T ss_pred             CHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhhhhhhHHHHHHHHHHcc
Confidence            9999865 568999999999999999999999997765544432222211111       12235678999999999999


Q ss_pred             cCcCccCCHHHHhcChhhhhccCC
Q psy3253         221 KNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       221 ~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      .||++|||++|+++||||+...+.
T Consensus       274 ~dp~~Rps~~~ll~h~~~~~~~~~  297 (303)
T 2vwi_A          274 KDPEKRPTAAELLRHKFFQKAKNK  297 (303)
T ss_dssp             SSGGGSCCHHHHHTSTTC------
T ss_pred             CChhhCcCHHHHhhChhhhcCCCC
Confidence            999999999999999999876654

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=2.4e-42  Score=288.12  Aligned_cols=207  Identities=36%  Similarity=0.699  Sum_probs=160.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLR-RKIHRDIKAG   77 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~-~iiH~dik~~   77 (251)
                      +.++||||+++++++.++...++||||++ |+|.+++..   ....+++..++.++.|++.||.|||++ |++|||||  
T Consensus        61 ~~~~h~~iv~~~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlk--  137 (290)
T 3fme_A           61 RTVDCPFTVTFYGALFREGDVWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVK--  137 (290)
T ss_dssp             TTCCCTTBCCEEEEEECSSSEEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCS--
T ss_pred             HhCCCCeEEEEeeeeeccCCEEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCC--
Confidence            56899999999999999999999999997 488887753   457899999999999999999999998 99999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccc----
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI----  153 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~----  153 (251)
                                                     |+||+++.++.++|+|||++...... .......+++.|+|||.+    
T Consensus       138 -------------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~  185 (290)
T 3fme_A          138 -------------------------------PSNVLINALGQVKMCDFGISGYLVDD-VAKDIDAGCKPYMAPERINPEL  185 (290)
T ss_dssp             -------------------------------GGGCEECTTCCEEBCCC----------------CCCCCCSCHHHHSCCT
T ss_pred             -------------------------------HHHEEECCCCCEEEeecCCccccccc-ccccccCCCccccChhhcChhh
Confidence                                           88999999999999999999765433 223334688999999996    


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         154 QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       154 ~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      .+..++.++||||+||++|++++|..||...... ............. .....+++++.+++.+||+.||++|||++|+
T Consensus       186 ~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~  264 (290)
T 3fme_A          186 NQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQ-LPADKFSAEFVDFTSQCLKKNSKERPTYPEL  264 (290)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCC-CCTTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             cCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCC-cccccCCHHHHHHHHHHhhcChhhCcCHHHH
Confidence            5567899999999999999999999999753322 2222221221112 2245689999999999999999999999999


Q ss_pred             hcChhhhhccCC
Q psy3253         233 LNHEFIQRHDTD  244 (251)
Q Consensus       233 l~hp~~~~~~~~  244 (251)
                      ++||||+.....
T Consensus       265 l~hp~f~~~~~~  276 (290)
T 3fme_A          265 MQHPFFTLHESK  276 (290)
T ss_dssp             TTSHHHHHHHHS
T ss_pred             HhCcccccCccc
Confidence            999999876543

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=3.1e-42  Score=289.58  Aligned_cols=206  Identities=58%  Similarity=1.037  Sum_probs=178.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+++++|.+++.  ...+++..+..++.|++.||.|||++|++|||||      
T Consensus        75 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~------  146 (303)
T 3a7i_A           75 SQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE--PGPLDETQIATILREILKGLDYLHSEKKIHRDIK------  146 (303)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS------
T ss_pred             HhCCCCCEeEEEEEEecCCeEEEEEEeCCCCcHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCC------
Confidence            46799999999999999999999999999999999985  4679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|+|||.+..............+++.|+|||.+.+..++.+
T Consensus       147 ---------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  199 (303)
T 3a7i_A          147 ---------------------------AANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSK  199 (303)
T ss_dssp             ---------------------------GGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTH
T ss_pred             ---------------------------hheEEECCCCCEEEeecccceecCccccccCccCCCcCccCHHHHhcCCCCch
Confidence                                       88999999999999999999766544434455668899999999998899999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +||||||+++|+|++|..||...........+.......  .+..++..+.+++.+||..||++|||++|+++||||.+.
T Consensus       200 ~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~  277 (303)
T 3a7i_A          200 ADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPT--LEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRN  277 (303)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCC--CCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCHHHHHH
T ss_pred             hhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCCCCC--CccccCHHHHHHHHHHcCCChhhCcCHHHHhhChhhhcC
Confidence            999999999999999999998776655544433332222  356789999999999999999999999999999999875


Q ss_pred             cCC
Q psy3253         242 DTD  244 (251)
Q Consensus       242 ~~~  244 (251)
                      ...
T Consensus       278 ~~~  280 (303)
T 3a7i_A          278 AKK  280 (303)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            443

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=3.6e-42  Score=308.12  Aligned_cols=205  Identities=26%  Similarity=0.494  Sum_probs=173.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||++++++|.+....|+|||||.+|+|.+++. ....+++..+..++.||+.||.|||++|++|||||     
T Consensus        90 l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlk-----  163 (494)
T 3lij_A           90 LKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEII-HRMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLK-----  163 (494)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----
T ss_pred             HHhCCCCCCCeEEEEEEeCCEEEEEEecCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCC-----
Confidence            467899999999999999999999999999999999887 44679999999999999999999999999999998     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCC---CCCeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~---~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.   ++.+||+|||++...... .......||+.|+|||++. ..
T Consensus       164 ----------------------------p~Nil~~~~~~~~~~kl~DfG~a~~~~~~-~~~~~~~gt~~y~aPE~l~-~~  213 (494)
T 3lij_A          164 ----------------------------PENLLLESKEKDALIKIVDFGLSAVFENQ-KKMKERLGTAYYIAPEVLR-KK  213 (494)
T ss_dssp             ----------------------------GGGEEESCSSTTCCEEECCCTTCEECBTT-BCBCCCCSCTTTCCHHHHT-TC
T ss_pred             ----------------------------hhhEEEeCCCCCCcEEEEECCCCeECCCC-ccccccCCCcCeeCHHHHc-cc
Confidence                                        77777754   345999999999765543 2334456899999999986 46


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      ++.++||||+||++|+|++|.+||.+.........+.... ......+..+++++.+||.+||+.||++|||++|+|+||
T Consensus       214 ~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp  293 (494)
T 3lij_A          214 YDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHP  293 (494)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCH
T ss_pred             CCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCHHHHHHHHHHCCCChhhCccHHHHhcCc
Confidence            8999999999999999999999998877665554443322 112223456899999999999999999999999999999


Q ss_pred             hhhhc
Q psy3253         237 FIQRH  241 (251)
Q Consensus       237 ~~~~~  241 (251)
                      ||+..
T Consensus       294 ~~~~~  298 (494)
T 3lij_A          294 WIKEM  298 (494)
T ss_dssp             HHHHH
T ss_pred             ccccC
Confidence            99874

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=1.6e-42  Score=287.12  Aligned_cols=209  Identities=23%  Similarity=0.380  Sum_probs=171.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...++||||+++++|.+++. ....+++..+..++.|++.||.|||++|++|||||      
T Consensus        60 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~------  132 (276)
T 2yex_A           60 KMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE-PDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIK------  132 (276)
T ss_dssp             HTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSB-TTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS------
T ss_pred             HhcCCCCceeeeeEEEcCCEEEEEEEecCCCcHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC------
Confidence            46899999999999999999999999999999999885 45679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--ccccccccccccccccccccCCC-
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPEVIQEIGY-  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~-  158 (251)
                                                 |+||+++.++.++|+|||.+.......  .......+++.|+|||.+.+..+ 
T Consensus       133 ---------------------------p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  185 (276)
T 2yex_A          133 ---------------------------PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFH  185 (276)
T ss_dssp             ---------------------------GGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBC
T ss_pred             ---------------------------hHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCC
Confidence                                       889999999999999999997543221  12234467889999999987665 


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhh-hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAI-FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++|+||+|+++|+|++|..||......... ...... .........+++.+.++|.+||+.||++|||++|+++|||
T Consensus       186 ~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~  264 (276)
T 2yex_A          186 AEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK-KTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRW  264 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTT-CTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTT
T ss_pred             CCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhc-ccccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcCcc
Confidence            67899999999999999999999765433221 111111 1122234567999999999999999999999999999999


Q ss_pred             hhhccCCC
Q psy3253         238 IQRHDTDP  245 (251)
Q Consensus       238 ~~~~~~~~  245 (251)
                      |++.....
T Consensus       265 ~~~~~~~~  272 (276)
T 2yex_A          265 YNKPLKKG  272 (276)
T ss_dssp             TTCCCC--
T ss_pred             ccChhhcc
Confidence            98765443

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.6e-42  Score=290.10  Aligned_cols=197  Identities=27%  Similarity=0.361  Sum_probs=163.7

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .+||||++++++|.++...|+||||+ +++|.+++...+..+++..++.++.|++.||.|||++|++|||||        
T Consensus       114 ~~h~~iv~l~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik--------  184 (311)
T 3p1a_A          114 GQHPCCVRLEQAWEEGGILYLQTELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVK--------  184 (311)
T ss_dssp             CCCTTBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS--------
T ss_pred             cCCCcEEEEEEEEEeCCEEEEEEecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC--------
Confidence            48999999999999999999999999 679999998777789999999999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchh
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD  163 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  163 (251)
                                               |+||+++.++.+||+|||++...... .......||+.|+|||++.+ .++.++|
T Consensus       185 -------------------------p~NIll~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~D  237 (311)
T 3p1a_A          185 -------------------------PANIFLGPRGRCKLGDFGLLVELGTA-GAGEVQEGDPRYMAPELLQG-SYGTAAD  237 (311)
T ss_dssp             -------------------------GGGEEECGGGCEEECCCTTCEECC-------CCCCCGGGCCGGGGGT-CCSTHHH
T ss_pred             -------------------------HHHEEECCCCCEEEccceeeeecccC-CCCcccCCCccccCHhHhcC-CCCchhh
Confidence                                     88999999999999999998765433 22334458999999999876 7899999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         164 MWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       164 vwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ||||||++|+|++|..|+.........   ..... ....+..+++++.++|.+||+.||++|||++|+++||||++
T Consensus       238 iwslG~il~el~~g~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~~~~  310 (311)
T 3p1a_A          238 VFSLGLTILEVACNMELPHGGEGWQQL---RQGYL-PPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQ  310 (311)
T ss_dssp             HHHHHHHHHHHHHTCCCCSSHHHHHHH---TTTCC-CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGSC
T ss_pred             HHHHHHHHHHHHhCCCCCCCccHHHHH---hccCC-CcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHhCccccC
Confidence            999999999999997666543322222   11111 11124567999999999999999999999999999999975

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=2.1e-42  Score=297.52  Aligned_cols=208  Identities=37%  Similarity=0.738  Sum_probs=171.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR-RKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~-~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.++...++||||+++++|.+++.. ...+++..+..++.|++.||.|||++ |++|||||    
T Consensus        85 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlk----  159 (360)
T 3eqc_A           85 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKK-AGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVK----  159 (360)
T ss_dssp             GGGCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCS----
T ss_pred             HHHCCCCCEEEEeEEEEECCEEEEEEECCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCcc----
Confidence            4678999999999999999999999999999999999974 46799999999999999999999996 99999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.++|+|||++......  ......+|+.|+|||++.+..++
T Consensus       160 -----------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~  208 (360)
T 3eqc_A          160 -----------------------------PSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPERLQGTHYS  208 (360)
T ss_dssp             -----------------------------GGGEEECTTCCEEECCCCCCHHHHHH--C----CCCCTTCCHHHHTTCCCS
T ss_pred             -----------------------------HHHEEECCCCCEEEEECCCCcccccc--cccCCCCCCCeECHHHHcCCCCC
Confidence                                         88999999999999999998654322  22334689999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc------------------------------------------CCCC
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI------------------------------------------PTKP  197 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~------------------------------------------~~~~  197 (251)
                      .++||||+||++|+|++|..||...+........                                          ....
T Consensus       209 ~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (360)
T 3eqc_A          209 VQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEP  288 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC------------------------------CCCHHHHHHHHHHSC
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhhhhHHhccC
Confidence            9999999999999999999999765443321111                                          0011


Q ss_pred             CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       198 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      . .......++.++.+||.+||+.||++|||++|+++||||++.+++.
T Consensus       289 ~-~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~~~  335 (360)
T 3eqc_A          289 P-PKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAEE  335 (360)
T ss_dssp             C-CCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHHHHHSC
T ss_pred             C-CCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhChHhhcchHhh
Confidence            1 1112344788999999999999999999999999999999876654

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=4.9e-42  Score=294.48  Aligned_cols=203  Identities=45%  Similarity=0.835  Sum_probs=173.5

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...++||||+. |+|.+++......+++..+..++.|++.||.|||++|++|||||      
T Consensus       109 ~~l~hpniv~~~~~~~~~~~~~lv~e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk------  181 (348)
T 1u5q_A          109 QKLRHPNTIQYRGCYLREHTAWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVK------  181 (348)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS------
T ss_pred             HhCCCCCEeeEEEEEEECCeEEEEEecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC------
Confidence            46899999999999999999999999996 68988887677889999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc---cCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---EIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~~~~  158 (251)
                                                 |+||+++.++.+||+|||++......    ....||+.|+|||++.   ...+
T Consensus       182 ---------------------------p~NIll~~~~~~kL~DfG~a~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~  230 (348)
T 1u5q_A          182 ---------------------------AGNILLSEPGLVKLGDFGSASIMAPA----NSFVGTPYWMAPEVILAMDEGQY  230 (348)
T ss_dssp             ---------------------------GGGEEEETTTEEEECCCTTCBSSSSB----CCCCSCGGGCCHHHHHTTSSCCB
T ss_pred             ---------------------------HHHEEECCCCCEEEeeccCceecCCC----CcccCCcceeCHhhhccccCCCC
Confidence                                       88999999999999999999765432    2356899999999984   5678


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI  238 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~  238 (251)
                      +.++|||||||++|+|++|..||.+.+.......+.....+. .....+++.+.++|.+||+.||++|||++|+++||||
T Consensus       231 ~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~  309 (348)
T 1u5q_A          231 DGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPA-LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFV  309 (348)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCC-CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHH
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCC-CCCCCCCHHHHHHHHHHcccChhhCcCHHHHhhChhh
Confidence            999999999999999999999998766555444333332222 2245679999999999999999999999999999999


Q ss_pred             hhccC
Q psy3253         239 QRHDT  243 (251)
Q Consensus       239 ~~~~~  243 (251)
                      .+...
T Consensus       310 ~~~~~  314 (348)
T 1u5q_A          310 LRERP  314 (348)
T ss_dssp             HSCCC
T ss_pred             hccCC
Confidence            87543

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=1.2e-42  Score=296.00  Aligned_cols=207  Identities=25%  Similarity=0.437  Sum_probs=165.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+++++|.++.. ....+++..+..++.|++.||.|||++|++|||||      
T Consensus        79 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlk------  151 (331)
T 4aaa_A           79 KQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLEL-FPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIK------  151 (331)
T ss_dssp             HHCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHH-STTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC------
T ss_pred             hhCCCCCEeeEEEEeecCCEEEEEEecCCcchHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcC------
Confidence            46899999999999999999999999999988888765 56789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccC-CCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~  160 (251)
                                                 |+||+++.++.++|+|||++..............+++.|+|||.+.+. .++.
T Consensus       152 ---------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~  204 (331)
T 4aaa_A          152 ---------------------------PENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGK  204 (331)
T ss_dssp             ---------------------------GGGEEECTTSCEEECCCTTC------------CCCCCTTCCHHHHTTCTTCCT
T ss_pred             ---------------------------hheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCcccccCCCCcch
Confidence                                       889999999999999999997655443334445688999999999764 6899


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---------------------CCCCCCCC-------CCCCCCHHHH
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---------------------TKPPPSFR-------EPDVWTPEFI  212 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---------------------~~~~~~~~-------~~~~~~~~~~  212 (251)
                      ++||||+||++|+|++|..||.+.........+.                     ....+...       ....+++++.
T Consensus       205 ~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  284 (331)
T 4aaa_A          205 AVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVI  284 (331)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHH
Confidence            9999999999999999999997765443322110                     00000000       1235789999


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                      +||.+||+.||++|||++|+|+||||+...
T Consensus       285 ~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  314 (331)
T 4aaa_A          285 DLAKKCLHIDPDKRPFCAELLHHDFFQMDG  314 (331)
T ss_dssp             HHHHHHTCSSGGGSCCGGGGGGSHHHHGGG
T ss_pred             HHHHHHhccCcccCCCHHHHhcCchhccCC
Confidence            999999999999999999999999998754

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=2.7e-42  Score=309.62  Aligned_cols=208  Identities=26%  Similarity=0.491  Sum_probs=175.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...|+|||||.+|+|.+++. ....+++..++.++.||+.||.|||++|++|||||     
T Consensus       100 l~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlk-----  173 (504)
T 3q5i_A          100 LKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQII-NRHKFDECDAANIMKQILSGICYLHKHNIVHRDIK-----  173 (504)
T ss_dssp             HHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHH-HHSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----
T ss_pred             HHhCCCCCCCeEEEEEEcCCEEEEEEecCCCCcHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCc-----
Confidence            357899999999999999999999999999999999987 34679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCC---CeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG---HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++   .+||+|||++...... .......||+.|+|||++.+ .
T Consensus       174 ----------------------------p~Nil~~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~-~  223 (504)
T 3q5i_A          174 ----------------------------PENILLENKNSLLNIKIVDFGLSSFFSKD-YKLRDRLGTAYYIAPEVLKK-K  223 (504)
T ss_dssp             ----------------------------GGGEEESSTTCCSSEEECCCTTCEECCTT-SCBCCCCSCTTTCCHHHHTT-C
T ss_pred             ----------------------------HHHEEEecCCCCccEEEEECCCCEEcCCC-CccccccCCcCCCCHHHhcc-C
Confidence                                        7788887665   6999999999765543 23344568999999999864 6


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC-CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP-PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      ++.++||||+||++|+|++|.+||.+.+.......+..... .....+..+++++.+||.+||+.||++|||++|+|+||
T Consensus       224 ~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h~  303 (504)
T 3q5i_A          224 YNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSR  303 (504)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSH
T ss_pred             CCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcCH
Confidence            89999999999999999999999988776666555443321 11122356899999999999999999999999999999


Q ss_pred             hhhhccCC
Q psy3253         237 FIQRHDTD  244 (251)
Q Consensus       237 ~~~~~~~~  244 (251)
                      ||++....
T Consensus       304 ~~~~~~~~  311 (504)
T 3q5i_A          304 WIKKYANN  311 (504)
T ss_dssp             HHHHTCCC
T ss_pred             hhhhchhc
Confidence            99987654

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=3.3e-42  Score=292.92  Aligned_cols=207  Identities=27%  Similarity=0.478  Sum_probs=171.4

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .||||+++++++.+....++||||+.+|+|.+++... ...+++..++.++.|++.||.|||++|++|||||        
T Consensus        87 ~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dik--------  158 (327)
T 3lm5_A           87 SCPRVINLHEVYENTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLK--------  158 (327)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC--------
T ss_pred             CCCCEEEEEEEEEeCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCC--------
Confidence            5799999999999999999999999999999988522 3679999999999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCC---CCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~---~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                               |+||+++.   ++.++|+|||++....... ......+++.|+|||++.+..++.
T Consensus       159 -------------------------p~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~  212 (327)
T 3lm5_A          159 -------------------------PQNILLSSIYPLGDIKIVDFGMSRKIGHAC-ELREIMGTPEYLAPEILNYDPITT  212 (327)
T ss_dssp             -------------------------GGGEEESCBTTBCCEEECCGGGCEEC----------CCCGGGCCHHHHTTCCCCT
T ss_pred             -------------------------hHHEEEecCCCCCcEEEeeCccccccCCcc-ccccccCCcCccCCeeecCCCCCc
Confidence                                     77888776   6789999999997654332 223456899999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC-CCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ  239 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~  239 (251)
                      ++||||+||++|+|++|..||.+.+.......+.. ...........+++.+.++|.+||+.||++|||++|+++||||+
T Consensus       213 ~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~~~~  292 (327)
T 3lm5_A          213 ATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQ  292 (327)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCGGGC
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCCHhhc
Confidence            99999999999999999999987766554433222 11222233567899999999999999999999999999999999


Q ss_pred             hccCCC
Q psy3253         240 RHDTDP  245 (251)
Q Consensus       240 ~~~~~~  245 (251)
                      ..+|+.
T Consensus       293 ~~~~~~  298 (327)
T 3lm5_A          293 QWDFEN  298 (327)
T ss_dssp             CCCTTC
T ss_pred             cccccc
Confidence            988865

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=9.2e-43  Score=297.73  Aligned_cols=213  Identities=27%  Similarity=0.430  Sum_probs=171.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh---------------------------------------C
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---------------------------------------K   42 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~---------------------------------------~   42 (251)
                      ++++||||+++++++.+....++||||+++|+|.+++...                                       .
T Consensus        83 ~~l~hpniv~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (345)
T 3hko_A           83 KKLHHPNIARLYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLD  162 (345)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECC
T ss_pred             HhCCCCCcceeehhhccCCeEEEEEeCCCCCcHHHHHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            4679999999999999999999999999999999988410                                       1


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCC--Ce
Q psy3253          43 KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG--HA  120 (251)
Q Consensus        43 ~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~--~~  120 (251)
                      ..+++..++.++.||+.||.|||++|++|||||                                 |+||+++.++  .+
T Consensus       163 ~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlk---------------------------------p~NIll~~~~~~~~  209 (345)
T 3hko_A          163 FVQREKLISNIMRQIFSALHYLHNQGICHRDIK---------------------------------PENFLFSTNKSFEI  209 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTEECCCCC---------------------------------GGGEEESCSSSCCE
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHCCccccCCC---------------------------------hhhEEEecCCCceE
Confidence            123677888999999999999999999999988                                 8888887665  79


Q ss_pred             EecccccccccCcccc----ccccccccccccccccccc--CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC
Q psy3253         121 KLADFGVAGQLTDTMA----KRNTVIGTPFWMAPEVIQE--IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP  194 (251)
Q Consensus       121 kl~dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~--~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~  194 (251)
                      ||+|||++........    ......+|+.|+|||++.+  ..++.++|||||||++|+|++|..||.+.........+.
T Consensus       210 kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~  289 (345)
T 3hko_A          210 KLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVL  289 (345)
T ss_dssp             EECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             EEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHH
Confidence            9999999975432211    2234568999999999965  678899999999999999999999998776655554433


Q ss_pred             CCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCCC
Q psy3253         195 TKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ  247 (251)
Q Consensus       195 ~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~~  247 (251)
                      ... .........+++++.++|.+||+.||++|||++|+++||||++..+.-.+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~hp~~~~~~~~~~~  343 (345)
T 3hko_A          290 NKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQFSDKIYK  343 (345)
T ss_dssp             HCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHHSHHHHTTSSCSSC
T ss_pred             hcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHHhcChhhccChHhhEe
Confidence            222 11222234578999999999999999999999999999999998876554

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=6.3e-42  Score=283.75  Aligned_cols=202  Identities=28%  Similarity=0.465  Sum_probs=165.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+.+++|.+++.. ...+++..+..++.|++.||.|||++|++|||||      
T Consensus        66 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~------  138 (276)
T 2h6d_A           66 KLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICK-HGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLK------  138 (276)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCC------
T ss_pred             hcCCCCCEeEEEEEEecCCeEEEEEeccCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCC------
Confidence            578999999999999999999999999999999999974 4679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC-Cc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY-DC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~  160 (251)
                                                 |+||+++.++.++|+|||++....... ......+++.|+|||.+.+..+ +.
T Consensus       139 ---------------------------p~Nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~  190 (276)
T 2h6d_A          139 ---------------------------PENVLLDAHMNAKIADFGLSNMMSDGE-FLRTSCGSPNYAAPEVISGRLYAGP  190 (276)
T ss_dssp             ---------------------------GGGEEECTTSCEEECCCCGGGCCCC--------------CCTGGGTTSCCCHH
T ss_pred             ---------------------------hhhEEECCCCCEEEeecccccccCCCc-ceecccCCccccCHHHHcCCCCCCc
Confidence                                       889999999999999999997654332 2233467889999999987665 67


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++|+||+|+++|+|++|..||...........+....   ...+..++.++.+++.+||+.||++|||++|+++||||++
T Consensus       191 ~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h~~~~~  267 (276)
T 2h6d_A          191 EVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGV---FYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQ  267 (276)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC---CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHT
T ss_pred             cchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCc---ccCchhcCHHHHHHHHHHccCChhhCCCHHHHHhChhhcc
Confidence            9999999999999999999998766555444333321   2235667999999999999999999999999999999986


Q ss_pred             c
Q psy3253         241 H  241 (251)
Q Consensus       241 ~  241 (251)
                      .
T Consensus       268 ~  268 (276)
T 2h6d_A          268 D  268 (276)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=9e-42  Score=287.00  Aligned_cols=205  Identities=24%  Similarity=0.397  Sum_probs=172.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+++++|.+++.. ...+++..+..++.|++.||.|||++|++|||||      
T Consensus        61 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dik------  133 (304)
T 2jam_A           61 KKIKHENIVTLEDIYESTTHYYLVMQLVSGGELFDRILE-RGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLK------  133 (304)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCC------
T ss_pred             HhCCCCCeeehhhhcccCCEEEEEEEcCCCccHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC------
Confidence            468999999999999999999999999999999999874 4679999999999999999999999999999998      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceec---CCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL---NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~---~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                 |+||++   +.++.++|+|||++......  ......+++.|+|||.+.+..+
T Consensus       134 ---------------------------p~NIl~~~~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  184 (304)
T 2jam_A          134 ---------------------------PENLLYLTPEENSKIMITDFGLSKMEQNG--IMSTACGTPGYVAPEVLAQKPY  184 (304)
T ss_dssp             ---------------------------GGGCEESSSSTTCCEEBCSCSTTCCCCCB--TTHHHHSCCCBCCTTTBSSCSC
T ss_pred             ---------------------------HHHEEEecCCCCCCEEEccCCcceecCCC--ccccccCCCCccChHHhccCCC
Confidence                                       777776   56788999999998654322  2233457899999999999899


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++||||+||++|+|++|..||...........+.... ......+..+++++.++|.+||..||++|||++|+++|||
T Consensus       185 ~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~  264 (304)
T 2jam_A          185 SKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPW  264 (304)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHH
T ss_pred             CchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcc
Confidence            999999999999999999999998766554443332221 1122234568999999999999999999999999999999


Q ss_pred             hhhcc
Q psy3253         238 IQRHD  242 (251)
Q Consensus       238 ~~~~~  242 (251)
                      |+...
T Consensus       265 ~~~~~  269 (304)
T 2jam_A          265 IDGNT  269 (304)
T ss_dssp             HHSSC
T ss_pred             ccCCC
Confidence            98643

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.7e-42  Score=299.95  Aligned_cols=204  Identities=26%  Similarity=0.443  Sum_probs=163.6

Q ss_pred             CCC-CCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           3 QCD-SPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         3 ~l~-hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      ++. ||||+++++++...  ..+|+||||++ ++|.++++.  ..+++..+..++.||+.||+|||++||+|||||    
T Consensus        64 ~l~~h~niv~l~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlk----  136 (388)
T 3oz6_A           64 ELSGHENIVNLLNVLRADNDRDVYLVFDYME-TDLHAVIRA--NILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMK----  136 (388)
T ss_dssp             HTTTCTTBCCEEEEEECTTSSCEEEEEECCS-EEHHHHHHH--TCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC----
T ss_pred             hccCCCCCCeeeeEEecCCCCEEEEEecccC-cCHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCC----
Confidence            454 99999999999754  37999999996 599999863  579999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc---------------------cccc
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT---------------------MAKR  138 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~---------------------~~~~  138 (251)
                                                   |+||+++.++.+||+|||+++.....                     ....
T Consensus       137 -----------------------------p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (388)
T 3oz6_A          137 -----------------------------PSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPIL  187 (388)
T ss_dssp             -----------------------------GGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC-------------
T ss_pred             -----------------------------HHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccc
Confidence                                         88999999999999999999754321                     1112


Q ss_pred             ccccccccccccccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC---CC----------------
Q psy3253         139 NTVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK---PP----------------  198 (251)
Q Consensus       139 ~~~~~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~---~~----------------  198 (251)
                      ....+|+.|+|||++.+ ..++.++||||+||++|+|++|.+||.+.+.......+...   +.                
T Consensus       188 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~  267 (388)
T 3oz6_A          188 TDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGVIDFPSNEDVESIQSPFAKTMI  267 (388)
T ss_dssp             --CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHTSCCSSHHHHH
T ss_pred             cCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHhccCHHHHHHH
Confidence            23468999999999976 67899999999999999999999999876654443322110   00                


Q ss_pred             -----------CCC--------------CCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         199 -----------PSF--------------REPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       199 -----------~~~--------------~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                                 ...              ..+..+++++.+||.+||+.||++|||++|+++||||+...
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~Hp~~~~~~  336 (388)
T 3oz6_A          268 ESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALKHPFVSIFH  336 (388)
T ss_dssp             HHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSTTTTTTC
T ss_pred             HhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhCCHHHHHhc
Confidence                       000              01236789999999999999999999999999999987643

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=4.2e-42  Score=304.84  Aligned_cols=209  Identities=26%  Similarity=0.404  Sum_probs=161.0

Q ss_pred             CCCCCCccceeeeeEee-----CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFK-----NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~-----~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      ++++||||+++++++..     ...+|+||||+ +++|.+++. ....+++..++.++.||+.||+|||++||+||||| 
T Consensus       107 ~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~-~~~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlK-  183 (458)
T 3rp9_A          107 NRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIA-DSDFKKLFR-TPVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLK-  183 (458)
T ss_dssp             HHCCCTTBCCEEEECCCSCTTTCCCEEEEECCC-SEEHHHHHH-SSCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-
T ss_pred             HhCCCCCCCceEEEEecCCcccCceEEEEEecc-ccchhhhcc-cCCCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCC-
Confidence            46899999999999953     35799999999 569999987 56789999999999999999999999999999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--------------------
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--------------------  136 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--------------------  136 (251)
                                                      |+||+++.++.+||+|||+++.......                    
T Consensus       184 --------------------------------p~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (458)
T 3rp9_A          184 --------------------------------PANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFP  231 (458)
T ss_dssp             --------------------------------GGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC--------------
T ss_pred             --------------------------------hhhEEECCCCCEeecccccchhccCccccccccccCcccccccccccc
Confidence                                            8899999999999999999976542211                    


Q ss_pred             -------ccccccccccccccccc-ccCCCCcchhHHHHHHHHHHHHh-----------CCCCCCCCCcc----------
Q psy3253         137 -------KRNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAE-----------GKPPYGDIHPM----------  187 (251)
Q Consensus       137 -------~~~~~~~~~~y~aPE~~-~~~~~~~~~DvwslG~~l~~l~~-----------g~~p~~~~~~~----------  187 (251)
                             ......||+.|+|||++ ....++.++|||||||++|+|++           |.++|.+.+..          
T Consensus       232 ~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~  311 (458)
T 3rp9_A          232 HTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGN  311 (458)
T ss_dssp             -------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC---------------
T ss_pred             ccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccccccccccccccCCCCccccccccccccc
Confidence                   12334579999999986 55679999999999999999998           66777543210          


Q ss_pred             -------------hhhhhcC------------------------CCCC-CCCCCCCCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         188 -------------RAIFMIP------------------------TKPP-PSFREPDVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       188 -------------~~~~~~~------------------------~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                                   ..+..+.                        .... .........++++.+||.+||..||++|||+
T Consensus       312 ~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t~  391 (458)
T 3rp9_A          312 DFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNKRITI  391 (458)
T ss_dssp             -----CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTTSCCH
T ss_pred             cccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCccccCCH
Confidence                         0000000                        0000 0011124568999999999999999999999


Q ss_pred             HHHhcChhhhhccCCC
Q psy3253         230 SEMLNHEFIQRHDTDP  245 (251)
Q Consensus       230 ~evl~hp~~~~~~~~~  245 (251)
                      +|+|+||||+...+..
T Consensus       392 ~e~L~Hp~f~~~~~~~  407 (458)
T 3rp9_A          392 NECLAHPFFKEVRIAE  407 (458)
T ss_dssp             HHHHHSGGGTTTCCGG
T ss_pred             HHHhcCHhhhhcCCCc
Confidence            9999999999887654

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=3.9e-42  Score=290.47  Aligned_cols=208  Identities=24%  Similarity=0.383  Sum_probs=159.5

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .+||||+++++++.++...|+||||+++|+|.+++.. ...+++..++.++.||+.||.|||++|++|||||        
T Consensus        68 ~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlk--------  138 (316)
T 2ac3_A           68 QGHRNVLELIEFFEEEDRFYLVFEKMRGGSILSHIHK-RRHFNELEASVVVQDVASALDFLHNKGIAHRDLK--------  138 (316)
T ss_dssp             CCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC--------
T ss_pred             cCCCCeeeEEEEEeeCCEEEEEEEcCCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCC--------
Confidence            4799999999999999999999999999999999974 4679999999999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCC---eEecccccccccCccc-------cccccccccccccccccc
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH---AKLADFGVAGQLTDTM-------AKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~---~kl~dfg~~~~~~~~~-------~~~~~~~~~~~y~aPE~~  153 (251)
                                               |+||+++.++.   +||+|||++.......       .......+|+.|+|||++
T Consensus       139 -------------------------p~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  193 (316)
T 2ac3_A          139 -------------------------PENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVV  193 (316)
T ss_dssp             -------------------------GGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCCHHHH
T ss_pred             -------------------------HHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHh
Confidence                                     77888876665   9999999987543211       111233488999999999


Q ss_pred             cc-----CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcch---------------hhhhcCCCCCCCCC--CCCCCCHHH
Q psy3253         154 QE-----IGYDCVADMWSLGITALEMAEGKPPYGDIHPMR---------------AIFMIPTKPPPSFR--EPDVWTPEF  211 (251)
Q Consensus       154 ~~-----~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~~~~~~  211 (251)
                      .+     ..++.++||||+||++|+|++|..||.+.....               ....+.... ..+.  ....+++++
T Consensus       194 ~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~  272 (316)
T 2ac3_A          194 EAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGK-YEFPDKDWAHISCAA  272 (316)
T ss_dssp             HHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCC-CCCCHHHHTTSCHHH
T ss_pred             hcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccC-cccCchhcccCCHHH
Confidence            65     557889999999999999999999996543211               111111111 1111  124578999


Q ss_pred             HHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCC
Q psy3253         212 IDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPS  246 (251)
Q Consensus       212 ~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~  246 (251)
                      .+||.+||+.||++|||++|+++||||+...++..
T Consensus       273 ~~li~~~L~~dP~~Rps~~e~l~hp~~~~~~~~~~  307 (316)
T 2ac3_A          273 KDLISKLLVRDAKQRLSAAQVLQHPWVQGCAPENT  307 (316)
T ss_dssp             HHHHHHHSCSSTTTSCCHHHHHHSTTCC-------
T ss_pred             HHHHHHHhhCChhhCCCHHHHhcChhhcCCCCccc
Confidence            99999999999999999999999999998766543

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.7e-41  Score=291.79  Aligned_cols=225  Identities=25%  Similarity=0.388  Sum_probs=166.3

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      .++||||+++++++......|+||||+ +++|.+++.... ..+++..++.++.||+.||.|||++||+||||||+|||+
T Consensus        92 ~~~h~~iv~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll  170 (360)
T 3llt_A           92 DINNNNIVKYHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILL  170 (360)
T ss_dssp             STTGGGBCCEEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEE
T ss_pred             CCCCCCeecccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEE
Confidence            456999999999999999999999999 889999997543 469999999999999999999999999999999887777


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                      ..+.........    ...    ..-+...+....++.+||+|||++......   .....+|+.|+|||++.+..++.+
T Consensus       171 ~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~  239 (360)
T 3llt_A          171 DDPYFEKSLITV----RRV----TDGKKIQIYRTKSTGIKLIDFGCATFKSDY---HGSIINTRQYRAPEVILNLGWDVS  239 (360)
T ss_dssp             SCTTCCEEEEEE----ECT----TTCCEEEEEEESCCCEEECCCTTCEETTSC---CCSCCSCGGGCCHHHHTTCCCCTT
T ss_pred             ccccccccccch----hcc----cccccccccccCCCCEEEEeccCceecCCC---CcCccCcccccCcHHHcCCCCCCc
Confidence            632110000000    000    000011122345788999999999754432   234567999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CCC--------------------CCCCCC--------------
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KPP--------------------PSFREP--------------  204 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~~--------------------~~~~~~--------------  204 (251)
                      +||||+||++|+|++|..||...+.......+..   ..+                    .....+              
T Consensus       240 ~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  319 (360)
T 3llt_A          240 SDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKK  319 (360)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhh
Confidence            9999999999999999999976554333221110   000                    000000              


Q ss_pred             ------CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhh
Q psy3253         205 ------DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ  239 (251)
Q Consensus       205 ------~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~  239 (251)
                            ...++.+.+||.+||+.||++|||++|+|+||||+
T Consensus       320 ~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~hp~f~  360 (360)
T 3llt_A          320 CLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFLE  360 (360)
T ss_dssp             CCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             cccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcCcccC
Confidence                  11247788999999999999999999999999996

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=4.1e-42  Score=285.89  Aligned_cols=209  Identities=27%  Similarity=0.446  Sum_probs=172.1

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...++||||+++++|.+++. ....+++..+..++.|++.||.|||++|++|||||      
T Consensus        63 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~------  135 (283)
T 3bhy_A           63 REIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLA-EKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLK------  135 (283)
T ss_dssp             HHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS------
T ss_pred             HhCCCCCeeehhheecCCCeEEEEEeecCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCC------
Confidence            46789999999999999999999999999999999997 45679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCC----CeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG----HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                 |+||+++.++    .++|+|||.+....... ......+++.|+|||.+.+..
T Consensus       136 ---------------------------p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~  187 (283)
T 3bhy_A          136 ---------------------------PENIMLLDKNVPNPRIKLIDFGIAHKIEAGN-EFKNIFGTPEFVAPEIVNYEP  187 (283)
T ss_dssp             ---------------------------GGGEEESCSSSSSCCEEECCCTTCEECC---------CCCGGGCCHHHHTTCC
T ss_pred             ---------------------------hHHEEEecCCCCCCceEEEecccceeccCCC-cccccCCCcCccCcceecCCC
Confidence                                       7788877665    79999999997654332 223345788999999999888


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC-CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP-PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      ++.++|+||+|+++|++++|..||.+.+.......+..... .....+..+++.+.+++.+||..||++|||++|+++||
T Consensus       188 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~  267 (283)
T 3bhy_A          188 LGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHS  267 (283)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCH
T ss_pred             CCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCH
Confidence            99999999999999999999999987766554443322211 11112356789999999999999999999999999999


Q ss_pred             hhhhccCCC
Q psy3253         237 FIQRHDTDP  245 (251)
Q Consensus       237 ~~~~~~~~~  245 (251)
                      ||+...+..
T Consensus       268 ~~~~~~~~~  276 (283)
T 3bhy_A          268 WIKAIRRRN  276 (283)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHHh
Confidence            999766554

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=9.2e-42  Score=289.37  Aligned_cols=205  Identities=48%  Similarity=0.936  Sum_probs=165.3

Q ss_pred             CCCccceeeeeEee------CCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           5 DSPYVVKYYGSYFK------NTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         5 ~hpniv~l~~~~~~------~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      +||||+++++++..      ....++||||+++++|.+++... ...+++..+..++.||+.||.|||++|++|||||  
T Consensus        79 ~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlk--  156 (326)
T 2x7f_A           79 HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIK--  156 (326)
T ss_dssp             CSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS--
T ss_pred             CCCCeeeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCc--
Confidence            79999999999986      46799999999999999999743 3579999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc---
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---  154 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---  154 (251)
                                                     |+||+++.++.++|+|||++..............+++.|+|||++.   
T Consensus       157 -------------------------------p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  205 (326)
T 2x7f_A          157 -------------------------------GQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDE  205 (326)
T ss_dssp             -------------------------------GGGEEECTTCCEEECCCTTTC-------------CCGGGCCHHHHC---
T ss_pred             -------------------------------HHHEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChhhhcccc
Confidence                                           8899999999999999999976544333334456889999999986   


Q ss_pred             --cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         155 --EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       155 --~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                        +..++.++|||||||++|+|++|..||.+.........+.....+. .....+++.+.++|.+||..||++|||++|+
T Consensus       206 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l  284 (326)
T 2x7f_A          206 NPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPR-LKSKKWSKKFQSFIESCLVKNHSQRPATEQL  284 (326)
T ss_dssp             -----CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCC-CSCSCSCHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred             ccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcccc-CCccccCHHHHHHHHHHhccChhhCCCHHHH
Confidence              5668899999999999999999999998776655544433332222 2345679999999999999999999999999


Q ss_pred             hcChhhhhccC
Q psy3253         233 LNHEFIQRHDT  243 (251)
Q Consensus       233 l~hp~~~~~~~  243 (251)
                      ++||||+...+
T Consensus       285 l~hp~~~~~~~  295 (326)
T 2x7f_A          285 MKHPFIRDQPN  295 (326)
T ss_dssp             HTSHHHHCCTT
T ss_pred             hhChHHhhCcc
Confidence            99999987654

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=6.6e-42  Score=286.10  Aligned_cols=209  Identities=33%  Similarity=0.537  Sum_probs=166.8

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK--TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~--~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      ++++||||+++++++......++||||+.+++|.+++.....  .+++..+..++.|++.||.|||++|++|||||    
T Consensus        74 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~----  149 (295)
T 2clq_A           74 KHLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIK----  149 (295)
T ss_dssp             HTCCCTTBCCEEEEEEETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCS----
T ss_pred             HhCCCCCEeeEeeEEEeCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCC----
Confidence            578999999999999999999999999999999999975433  46789999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCC-CCCeEecccccccccCcccccccccccccccccccccccCC-
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-  157 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-  157 (251)
                                                   |+||+++. ++.++|+|||.+..............+++.|+|||++.+.. 
T Consensus       150 -----------------------------p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  200 (295)
T 2clq_A          150 -----------------------------GDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPR  200 (295)
T ss_dssp             -----------------------------GGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGG
T ss_pred             -----------------------------hhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCC
Confidence                                         88888876 78999999999976554333334456889999999997643 


Q ss_pred             -CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         158 -YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       158 -~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                       ++.++||||||+++|+|++|..||......................+..+++++.+++.+||+.||++|||++|+++||
T Consensus       201 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~~  280 (295)
T 2clq_A          201 GYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDE  280 (295)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTSG
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccccccccccccCCHHHHHHHHHHccCChhhCCCHHHHhcCh
Confidence             7889999999999999999999996543322111100000111123567899999999999999999999999999999


Q ss_pred             hhhhccC
Q psy3253         237 FIQRHDT  243 (251)
Q Consensus       237 ~~~~~~~  243 (251)
                      ||+....
T Consensus       281 ~~~~~~~  287 (295)
T 2clq_A          281 FLKVSSK  287 (295)
T ss_dssp             GGCC---
T ss_pred             hhhhccc
Confidence            9986543

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=1.4e-41  Score=291.35  Aligned_cols=211  Identities=24%  Similarity=0.424  Sum_probs=168.1

Q ss_pred             CCCCCCccceeeeeEee--------CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccC
Q psy3253           2 QQCDSPYVVKYYGSYFK--------NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRD   73 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~--------~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~d   73 (251)
                      ++++||||+++++++..        ....|+||||+++ +|.+.+......+++.+++.++.||+.||.|||++|++|||
T Consensus        71 ~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~D  149 (351)
T 3mi9_A           71 QLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRD  149 (351)
T ss_dssp             HHCCCTTBCCEEEEEEEC--------CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             HhccCCCcccHhheeeccccccccCCceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCC
Confidence            46799999999999986        4468999999975 88888875667899999999999999999999999999999


Q ss_pred             CCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc----ccccccccccccccc
Q psy3253          74 IKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT----MAKRNTVIGTPFWMA  149 (251)
Q Consensus        74 ik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~~~y~a  149 (251)
                      ||                                 |+||+++.++.+||+|||++......    ........+|+.|+|
T Consensus       150 lk---------------------------------p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~a  196 (351)
T 3mi9_A          150 MK---------------------------------AANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRP  196 (351)
T ss_dssp             CS---------------------------------GGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCC
T ss_pred             CC---------------------------------HHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccC
Confidence            88                                 88999999999999999999765421    122234467899999


Q ss_pred             cccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CCCCCCC-CCCC-------------------
Q psy3253         150 PEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TKPPPSF-REPD-------------------  205 (251)
Q Consensus       150 PE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~~~~~~-~~~~-------------------  205 (251)
                      ||++.+ ..++.++||||+||++|+|++|.+||.+.+.......+.   ...+... ....                   
T Consensus       197 PE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (351)
T 3mi9_A          197 PELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVK  276 (351)
T ss_dssp             HHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHH
T ss_pred             chhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHH
Confidence            999876 558999999999999999999999998765543332211   1111110 0000                   


Q ss_pred             ------CCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCC
Q psy3253         206 ------VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPS  246 (251)
Q Consensus       206 ------~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~  246 (251)
                            ..++++.+||.+||+.||++|||++|+++||||+....+..
T Consensus       277 ~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~  323 (351)
T 3mi9_A          277 DRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSD  323 (351)
T ss_dssp             HHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGSSSCCCC
T ss_pred             HHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCCCCcCCCCCccc
Confidence                  02678999999999999999999999999999987666543

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=2.4e-42  Score=299.19  Aligned_cols=196  Identities=11%  Similarity=0.071  Sum_probs=158.9

Q ss_pred             CCCCCCCccceee-------eeEeeCC-----------------eEEEEEEccCCCCHHHHHHHhCCCCC-------HHH
Q psy3253           1 MQQCDSPYVVKYY-------GSYFKNT-----------------DLWIVMEYCGAGSVSDIMRLRKKTLS-------EDE   49 (251)
Q Consensus         1 l~~l~hpniv~l~-------~~~~~~~-----------------~~~lv~e~~~~gsL~~~~~~~~~~l~-------~~~   49 (251)
                      |++++|||||+++       +++.+.+                 ..|+||||+ +|+|.+++... ..++       +..
T Consensus       130 l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~-~~~~~~~~~l~~~~  207 (377)
T 3byv_A          130 LRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVL-LSHSSTHKSLVHHA  207 (377)
T ss_dssp             STTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHH-HHTTTTTHHHHHHH
T ss_pred             ccccCCHHHHHHHhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhc-cccccccccccHHH
Confidence            4678999999998       6665443                 389999999 67999999743 2344       478


Q ss_pred             HHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEeccccccc
Q psy3253          50 IATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAG  129 (251)
Q Consensus        50 ~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~  129 (251)
                      +..++.||+.||.|||++||+|||||                                 |+||+++.++.+||+|||+++
T Consensus       208 ~~~i~~qi~~aL~~LH~~~ivHrDik---------------------------------p~NIll~~~~~~kL~DFG~a~  254 (377)
T 3byv_A          208 RLQLTLQVIRLLASLHHYGLVHTYLR---------------------------------PVDIVLDQRGGVFLTGFEHLV  254 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCC---------------------------------GGGEEECTTCCEEECCGGGCE
T ss_pred             HHHHHHHHHHHHHHHHhCCeecCCCC---------------------------------HHHEEEcCCCCEEEEechhhe
Confidence            88899999999999999999999988                                 889999999999999999997


Q ss_pred             ccCcccccccccccccccccccccccC-----------CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC
Q psy3253         130 QLTDTMAKRNTVIGTPFWMAPEVIQEI-----------GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP  198 (251)
Q Consensus       130 ~~~~~~~~~~~~~~~~~y~aPE~~~~~-----------~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~  198 (251)
                      ....   ......| +.|+|||++.+.           .++.++|||||||++|+|++|..||.+.........+...  
T Consensus       255 ~~~~---~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~--  328 (377)
T 3byv_A          255 RDGA---RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGSEWIFRS--  328 (377)
T ss_dssp             ETTC---EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CCSGGGGSS--
T ss_pred             ecCC---cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccchhhhhhh--
Confidence            5433   2233456 889999999877           8999999999999999999999999765544433333221  


Q ss_pred             CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         199 PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       199 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                           +..+++++.++|.+||+.||++|||++|+++||||+...
T Consensus       329 -----~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~  367 (377)
T 3byv_A          329 -----CKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLR  367 (377)
T ss_dssp             -----CCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHH
T ss_pred             -----ccCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHHH
Confidence                 356799999999999999999999999999999998754

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=8.6e-42  Score=292.16  Aligned_cols=204  Identities=25%  Similarity=0.473  Sum_probs=161.1

Q ss_pred             CCCC--CccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           3 QCDS--PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         3 ~l~h--pniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +++|  |||+++++++.++...|+|||+. +++|.+++. ....+++.++..++.||+.||.|||++||+|||||     
T Consensus        63 ~l~~~~~~iv~~~~~~~~~~~~~lv~e~~-~~~L~~~l~-~~~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDik-----  135 (343)
T 3dbq_A           63 KLQQHSDKIIRLYDYEITDQYIYMVMECG-NIDLNSWLK-KKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLK-----  135 (343)
T ss_dssp             HHTTTCTTBCCEEEEEECSSEEEEEECCC-SEEHHHHHH-HSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----
T ss_pred             hhhhcCCceEEEeeeEeeCCEEEEEEeCC-CCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC-----
Confidence            4555  99999999999999999999954 789999997 46789999999999999999999999999999998     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccccccccccc---
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQE---  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~---  155 (251)
                                                  |+||+++ ++.+||+|||++........  ......||+.|+|||++.+   
T Consensus       136 ----------------------------p~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  186 (343)
T 3dbq_A          136 ----------------------------PANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSS  186 (343)
T ss_dssp             ----------------------------GGGEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-
T ss_pred             ----------------------------cceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccc
Confidence                                        7788885 56799999999976543322  1234568999999999864   


Q ss_pred             --------CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         156 --------IGYDCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       156 --------~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                              ..++.++|||||||++|+|++|..||...... .....+.. .......+...++++.+++.+||+.||++|
T Consensus       187 ~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~L~~dp~~R  265 (343)
T 3dbq_A          187 SRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIID-PNHEIEFPDIPEKDLQDVLKCCLKRDPKQR  265 (343)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHC-TTSCCCCCCCSCHHHHHHHHHHTCSSTTTS
T ss_pred             cccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhc-CCcccCCcccCCHHHHHHHHHHcCCChhHC
Confidence                    67889999999999999999999999764332 22222211 112233456678899999999999999999


Q ss_pred             CCHHHHhcChhhhhccC
Q psy3253         227 ATASEMLNHEFIQRHDT  243 (251)
Q Consensus       227 ps~~evl~hp~~~~~~~  243 (251)
                      ||++|+++||||+....
T Consensus       266 pt~~e~l~hp~~~~~~~  282 (343)
T 3dbq_A          266 ISIPELLAHPYVQIQTH  282 (343)
T ss_dssp             CCHHHHHTSHHHHSCCC
T ss_pred             CCHHHHHhCccccccCC
Confidence            99999999999986443

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=1.9e-41  Score=298.73  Aligned_cols=211  Identities=25%  Similarity=0.422  Sum_probs=163.0

Q ss_pred             CCCCCCccceeeeeEeeC-----CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKN-----TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~-----~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      ++++||||+++++++...     ...|+||||++ ++|.+++. ....+++..++.++.||+.||+|||++||+||||| 
T Consensus        80 ~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~-~~~~l~~~~~~~i~~qil~aL~~LH~~givHrDlk-  156 (432)
T 3n9x_A           80 NRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD-SDLKKLFK-TPIFLTEEHIKTILYNLLLGENFIHESGIIHRDLK-  156 (432)
T ss_dssp             HHCCCTTBCCEEEECCCSCTTTCCCEEEEEECCS-EEHHHHHH-SSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-
T ss_pred             HHcCCCCcceEEEEEecCCCCcCCeEEEEEecCC-cCHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-
Confidence            468999999999999766     57999999996 59999997 55779999999999999999999999999999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--------------------
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--------------------  136 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--------------------  136 (251)
                                                      |+||+++.++.+||+|||+++.......                    
T Consensus       157 --------------------------------p~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (432)
T 3n9x_A          157 --------------------------------PANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNL  204 (432)
T ss_dssp             --------------------------------GGGEEECTTCCEEECCCTTCEEC-------------------------
T ss_pred             --------------------------------HHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccch
Confidence                                            8899999999999999999986543211                    


Q ss_pred             --ccccccccccccccccc-ccCCCCcchhHHHHHHHHHHHHhCCCC-----------CCCCCcc---------------
Q psy3253         137 --KRNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITALEMAEGKPP-----------YGDIHPM---------------  187 (251)
Q Consensus       137 --~~~~~~~~~~y~aPE~~-~~~~~~~~~DvwslG~~l~~l~~g~~p-----------~~~~~~~---------------  187 (251)
                        ......+|+.|+|||++ ....++.++||||+||++|+|++|..|           |.+.+..               
T Consensus       205 ~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~  284 (432)
T 3n9x_A          205 KKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKS  284 (432)
T ss_dssp             ------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC----------CHHH
T ss_pred             hccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccccccccccccCCCccccccCcccccccccccc
Confidence              12445689999999986 566799999999999999999985444           4332100               


Q ss_pred             -----hhhhhcCCC--------------------CCCCCC-----CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         188 -----RAIFMIPTK--------------------PPPSFR-----EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       188 -----~~~~~~~~~--------------------~~~~~~-----~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                           ..+..+...                    .+....     ....+++++.+||.+||+.||++|||++|+|+|||
T Consensus       285 ~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~  364 (432)
T 3n9x_A          285 NRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRITIDQALDHPY  364 (432)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTCGG
T ss_pred             hHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcChh
Confidence                 000000000                    000000     11457999999999999999999999999999999


Q ss_pred             hhhccCCCCC
Q psy3253         238 IQRHDTDPSQ  247 (251)
Q Consensus       238 ~~~~~~~~~~  247 (251)
                      |+...+....
T Consensus       365 f~~~~~~~~e  374 (432)
T 3n9x_A          365 LKDVRKKKLE  374 (432)
T ss_dssp             GTTTCCTTTC
T ss_pred             hhhccCcccC
Confidence            9998776544

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=3.6e-42  Score=297.47  Aligned_cols=204  Identities=11%  Similarity=0.113  Sum_probs=154.5

Q ss_pred             CCCccceee-------eeEeeC-----------------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHH------HHHH
Q psy3253           5 DSPYVVKYY-------GSYFKN-----------------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEI------ATIL   54 (251)
Q Consensus         5 ~hpniv~l~-------~~~~~~-----------------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~------~~~~   54 (251)
                      +||||++++       +++...                 ...|+||||++ |+|.+++...+..+.+...      ..++
T Consensus       122 ~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~  200 (371)
T 3q60_A          122 ESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILT  200 (371)
T ss_dssp             ----------CBCCCCEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred             cChhhhhhceeEEeeehheecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHH
Confidence            799988765       444332                 34899999998 7999999865555555555      6777


Q ss_pred             HHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc
Q psy3253          55 CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT  134 (251)
Q Consensus        55 ~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~  134 (251)
                      .||+.||.|||++||+|||||                                 |+||+++.++.+||+|||+++.....
T Consensus       201 ~qi~~aL~~LH~~~ivHrDik---------------------------------p~NIll~~~~~~kL~DFG~a~~~~~~  247 (371)
T 3q60_A          201 AQLIRLAANLQSKGLVHGHFT---------------------------------PDNLFIMPDGRLMLGDVSALWKVGTR  247 (371)
T ss_dssp             HHHHHHHHHHHHTTEEETTCS---------------------------------GGGEEECTTSCEEECCGGGEEETTCE
T ss_pred             HHHHHHHHHHHHCCCccCcCC---------------------------------HHHEEECCCCCEEEEecceeeecCCC
Confidence            999999999999999999988                                 88999999999999999999765432


Q ss_pred             ccccccccccccccccccccc--CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhh------hcCCCCCCCCCCCCC
Q psy3253         135 MAKRNTVIGTPFWMAPEVIQE--IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIF------MIPTKPPPSFREPDV  206 (251)
Q Consensus       135 ~~~~~~~~~~~~y~aPE~~~~--~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~------~~~~~~~~~~~~~~~  206 (251)
                      .   ....+|+.|+|||++.+  ..++.++|||||||++|+|++|..||.+........      .........+..+..
T Consensus       248 ~---~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (371)
T 3q60_A          248 G---PASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTP  324 (371)
T ss_dssp             E---EGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSC
T ss_pred             c---cCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccC
Confidence            1   13456789999999987  779999999999999999999999997653321110      011112223333457


Q ss_pred             CCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         207 WTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       207 ~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      +++++.+||.+||+.||++|||++|+++||||++..+..
T Consensus       325 ~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~  363 (371)
T 3q60_A          325 LPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNEI  363 (371)
T ss_dssp             CCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHHHHH
Confidence            899999999999999999999999999999999877653

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=1.5e-41  Score=284.41  Aligned_cols=206  Identities=34%  Similarity=0.505  Sum_probs=171.8

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||||+++++++.++...++||||+++++|.+++.. ...+++..+..++.||+.||.|||++|++|||||         
T Consensus        82 ~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~---------  151 (298)
T 1phk_A           82 GHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTE-KVTLSEKETRKIMRALLEVICALHKLNIVHRDLK---------  151 (298)
T ss_dssp             TCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS---------
T ss_pred             CCCCEeeeeeeeccCCeEEEEEeccCCCcHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC---------
Confidence            599999999999999999999999999999999974 4689999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc------cCCC
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ------EIGY  158 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~------~~~~  158 (251)
                                              |+||+++.++.++|+|||.+...... .......+++.|+|||++.      ...+
T Consensus       152 ------------------------p~Nil~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~~  206 (298)
T 1phk_A          152 ------------------------PENILLDDDMNIKLTDFGFSCQLDPG-EKLREVCGTPSYLAPEIIECSMNDNHPGY  206 (298)
T ss_dssp             ------------------------GGGEEECTTCCEEECCCTTCEECCTT-CCBCCCCSCGGGCCHHHHHHHHCTTSCCB
T ss_pred             ------------------------cceEEEcCCCcEEEecccchhhcCCC-cccccccCCccccCHHHhccccccccccC
Confidence                                    88999999999999999999765433 2233456788999999985      4567


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++||||||+++|+|++|..||...........+.... .........++.++.+++.+||+.||++|||++|+++|||
T Consensus       207 ~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~  286 (298)
T 1phk_A          207 GKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPF  286 (298)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGG
T ss_pred             CcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHhChH
Confidence            889999999999999999999997766554443332221 1112223467899999999999999999999999999999


Q ss_pred             hhhccCCC
Q psy3253         238 IQRHDTDP  245 (251)
Q Consensus       238 ~~~~~~~~  245 (251)
                      |++..++.
T Consensus       287 ~~~~~~~~  294 (298)
T 1phk_A          287 FQQYVVEE  294 (298)
T ss_dssp             GCTTC---
T ss_pred             hhhccchh
Confidence            99887764

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=5.3e-42  Score=296.04  Aligned_cols=201  Identities=30%  Similarity=0.512  Sum_probs=169.8

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||||+++++++......|+||||+++++|.+++. ....+++..+..++.||+.||.|||+.|++|||||         
T Consensus       158 ~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~-~~~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlk---------  227 (365)
T 2y7j_A          158 GHPHIITLIDSYESSSFMFLVFDLMRKGELFDYLT-EKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLK---------  227 (365)
T ss_dssp             TCTTBCCEEEEEEBSSEEEEEECCCTTCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS---------
T ss_pred             CCCCEeEEEEEEeeCCEEEEEEEeCCCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC---------
Confidence            79999999999999999999999999999999997 44679999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc------CCC
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE------IGY  158 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~  158 (251)
                                              |+||+++.++.++|+|||++...... .......||+.|+|||++.+      ..+
T Consensus       228 ------------------------p~NIl~~~~~~ikl~DfG~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~  282 (365)
T 2y7j_A          228 ------------------------PENILLDDNMQIRLSDFGFSCHLEPG-EKLRELCGTPGYLAPEILKCSMDETHPGY  282 (365)
T ss_dssp             ------------------------GGGEEECTTCCEEECCCTTCEECCTT-CCBCCCCSCGGGCCHHHHHHTTCTTSCCB
T ss_pred             ------------------------HHHEEECCCCCEEEEecCcccccCCC-cccccCCCCCCccChhhccccccccCcCC
Confidence                                    88999999999999999999765533 22344568999999999853      357


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC-CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP-PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++|||||||++|+|++|..||.+.........+..... .....+..+++.+.++|.+||..||++|||++|+++|||
T Consensus       283 ~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~  362 (365)
T 2y7j_A          283 GKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQHPF  362 (365)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGG
T ss_pred             CchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcc
Confidence            8899999999999999999999987665544433322211 111123467899999999999999999999999999999


Q ss_pred             hhh
Q psy3253         238 IQR  240 (251)
Q Consensus       238 ~~~  240 (251)
                      |++
T Consensus       363 f~r  365 (365)
T 2y7j_A          363 FER  365 (365)
T ss_dssp             GCC
T ss_pred             cCC
Confidence            974

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=8.3e-42  Score=297.64  Aligned_cols=211  Identities=30%  Similarity=0.422  Sum_probs=166.0

Q ss_pred             CCCCCCCccceeeeeEeeCC------eEEEEEEccCCCCHHHHHH---HhCCCCCHHHHHHHHHHHHHHHHHHHhCCccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT------DLWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCDTLKGLEYLHLRRKIH   71 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~------~~~lv~e~~~~gsL~~~~~---~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH   71 (251)
                      |++++||||++++++|....      ..++||||+.+ ++.+.+.   .....+++..++.++.||+.||.|||++||+|
T Consensus        86 l~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH  164 (394)
T 4e7w_A           86 MRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICH  164 (394)
T ss_dssp             HHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCSE-EHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEEC
T ss_pred             HHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccCc-cHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccC
Confidence            35789999999999996543      38899999976 4444332   23578999999999999999999999999999


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecC-CCCCeEecccccccccCcccccccccccccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAP  150 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~-~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  150 (251)
                      ||||                                 |+||+++ .++.+||+|||+++..... .......+|+.|+||
T Consensus       165 rDlk---------------------------------p~Nill~~~~~~~kL~DFG~a~~~~~~-~~~~~~~~t~~y~aP  210 (394)
T 4e7w_A          165 RDIK---------------------------------PQNLLLDPPSGVLKLIDFGSAKILIAG-EPNVSYICSRYYRAP  210 (394)
T ss_dssp             SCCS---------------------------------GGGEEEETTTTEEEECCCTTCEECCTT-CCCCSSCSCGGGCCH
T ss_pred             CCCC---------------------------------HHHEEEcCCCCcEEEeeCCCcccccCC-CCCcccccCcCccCH
Confidence            9988                                 8899998 7889999999999765433 223345678999999


Q ss_pred             cccccC-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC-------------------CCCCCC-------CC
Q psy3253         151 EVIQEI-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT-------------------KPPPSF-------RE  203 (251)
Q Consensus       151 E~~~~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~-------------------~~~~~~-------~~  203 (251)
                      |++.+. .++.++||||+||++|+|++|++||.+.+.......+..                   ...+..       ..
T Consensus       211 E~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (394)
T 4e7w_A          211 ELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVF  290 (394)
T ss_dssp             HHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHS
T ss_pred             HHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhc
Confidence            998664 589999999999999999999999987654433222110                   000000       01


Q ss_pred             CCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCC
Q psy3253         204 PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPS  246 (251)
Q Consensus       204 ~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~  246 (251)
                      +..+++++.+||.+||+.||++|||++|+++||||+...+...
T Consensus       291 ~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~  333 (394)
T 4e7w_A          291 RPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELRTGEA  333 (394)
T ss_dssp             CTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTTSSCC
T ss_pred             cccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhccccc
Confidence            2347899999999999999999999999999999998776543

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=3.2e-41  Score=280.37  Aligned_cols=214  Identities=22%  Similarity=0.362  Sum_probs=160.0

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +||||+++++++.++...++||||+++++|.+++...   ...+++..++.++.||+.||.|||++|++||||||+||++
T Consensus        69 ~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~  148 (289)
T 1x8b_A           69 QHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFI  148 (289)
T ss_dssp             SCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEE
T ss_pred             CCCCeeeeeeeeecCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEE
Confidence            8999999999999999999999999999999999743   2679999999999999999999999999999999666655


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccC-CCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~  160 (251)
                      ..+........              .............++|+|||.+......    ....+++.|+|||.+.+. .++.
T Consensus       149 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~kl~Dfg~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~  210 (289)
T 1x8b_A          149 SRTSIPNAASE--------------EGDEDDWASNKVMFKIGDLGHVTRISSP----QVEEGDSRFLANEVLQENYTHLP  210 (289)
T ss_dssp             C----------------------------------CCCEEECCCTTCEETTCS----CCCCCCGGGCCHHHHTTCCTTHH
T ss_pred             cCCCCCccccc--------------ccccccccCCceEEEEcccccccccCCc----cccCCCccccChhHhcCCCCCCc
Confidence            42110000000              0000001124457999999999765433    223578999999999765 5668


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++|||||||++|++++|.+++.........   .....+  ..+..+++++.+++.+||+.||++|||++|+++||||+.
T Consensus       211 ~~Di~slG~il~~l~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~  285 (289)
T 1x8b_A          211 KADIFALALTVVCAAGAEPLPRNGDQWHEI---RQGRLP--RIPQVLSQEFTELLKVMIHPDPERRPSAMALVKHSVLLS  285 (289)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCSSSHHHHHH---HTTCCC--CCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTCTTC--
T ss_pred             hhhHHHHHHHHHHHhcCCCCCcchhHHHHH---HcCCCC--CCCcccCHHHHHHHHHHhCCCcccCCCHHHHhhChHhhh
Confidence            999999999999999999887554333222   222211  235678999999999999999999999999999999986


Q ss_pred             c
Q psy3253         241 H  241 (251)
Q Consensus       241 ~  241 (251)
                      .
T Consensus       286 ~  286 (289)
T 1x8b_A          286 A  286 (289)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.3e-41  Score=287.21  Aligned_cols=206  Identities=26%  Similarity=0.510  Sum_probs=163.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK--KTLSEDEIATILCDTLKGLEYLHLRR--KIHRDIKAG   77 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~--~~l~~~~~~~~~~~i~~~l~~LH~~~--iiH~dik~~   77 (251)
                      ++++||||+++++++.+....++||||+++|+|.+++....  ..+++..++.++.|++.||.|||++|  ++|||||  
T Consensus        89 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dik--  166 (309)
T 3p86_A           89 KRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLK--  166 (309)
T ss_dssp             HHCCCTTBCCEEEEECSTTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCC--
T ss_pred             HhCCCCCEeeEEEEEEECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCC--
Confidence            46899999999999999999999999999999999997332  23999999999999999999999999  9999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                     |+||+++.++.+||+|||+++.............||+.|+|||++.+..
T Consensus       167 -------------------------------p~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  215 (309)
T 3p86_A          167 -------------------------------SPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEP  215 (309)
T ss_dssp             -------------------------------GGGEEECTTCCEEECCCC-----------------CCTTSCHHHHTTCC
T ss_pred             -------------------------------hhhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChhhhcCCC
Confidence                                           8899999999999999999975544333344567899999999999999


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc--C
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN--H  235 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~--h  235 (251)
                      ++.++|||||||++|+|++|..||.+.+.......+.... .....+..+++++.++|.+||+.||++|||++|+++  .
T Consensus       216 ~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~  294 (309)
T 3p86_A          216 SNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKC-KRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLR  294 (309)
T ss_dssp             CCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSC-CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcC-CCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence            9999999999999999999999998876665554432111 123346778999999999999999999999999987  4


Q ss_pred             hhhhhc
Q psy3253         236 EFIQRH  241 (251)
Q Consensus       236 p~~~~~  241 (251)
                      ++++..
T Consensus       295 ~~~~~~  300 (309)
T 3p86_A          295 PLIKSA  300 (309)
T ss_dssp             HHHC--
T ss_pred             HHHHhC
Confidence            555543

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.4e-41  Score=286.54  Aligned_cols=205  Identities=28%  Similarity=0.486  Sum_probs=167.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++||||+++|+|.++++.....+++.++..++.|++.||.|||++|++|||||     
T Consensus        61 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlk-----  135 (310)
T 3s95_A           61 MRCLEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLN-----  135 (310)
T ss_dssp             HTTCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----
T ss_pred             HHhCCCcCcccEEEEEecCCeeEEEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCC-----
Confidence            467899999999999999999999999999999999998667889999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--------------ccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--------------RNTVIGTPF  146 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--------------~~~~~~~~~  146 (251)
                                                  |+||+++.++.+||+|||++.........              .....||+.
T Consensus       136 ----------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  187 (310)
T 3s95_A          136 ----------------------------SHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPY  187 (310)
T ss_dssp             ----------------------------TTSEEECTTSCEEECCCTTCEECC--------------------CCCCSCGG
T ss_pred             ----------------------------cCeEEECCCCCEEEeecccceecccccccccccccccccccccccccCCCcc
Confidence                                        88999999999999999999765432211              113468999


Q ss_pred             cccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         147 WMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       147 y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      |+|||++.+..++.++||||||+++|++++|..||......................+..+++++.+++.+||+.||++|
T Consensus       188 y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R  267 (310)
T 3s95_A          188 WMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKR  267 (310)
T ss_dssp             GCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCTTCCTTHHHHHHHHTCSSGGGS
T ss_pred             eeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCCCCCHHHHHHHHHHccCChhhC
Confidence            99999999999999999999999999999999998654332221111000000111245678999999999999999999


Q ss_pred             CCHHHHhcChhhhh
Q psy3253         227 ATASEMLNHEFIQR  240 (251)
Q Consensus       227 ps~~evl~hp~~~~  240 (251)
                      ||++|+++  +++.
T Consensus       268 ps~~~l~~--~L~~  279 (310)
T 3s95_A          268 PSFVKLEH--WLET  279 (310)
T ss_dssp             CCHHHHHH--HHHH
T ss_pred             cCHHHHHH--HHHH
Confidence            99999985  5543

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=5.8e-42  Score=300.89  Aligned_cols=206  Identities=29%  Similarity=0.463  Sum_probs=160.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++. ....|+||||+.+|+|.+++. ....+++..++.++.|++.||.|||++|++|||||      
T Consensus       195 ~~l~hpniv~l~~~~~-~~~~~lv~e~~~~g~L~~~l~-~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlk------  266 (419)
T 3i6u_A          195 KKLNHPCIIKIKNFFD-AEDYYIVLELMEGGELFDKVV-GNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLK------  266 (419)
T ss_dssp             HHCCCTTBCCCCEEEE-SSEEEEEEECCTTCBGGGGTS-SSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC------
T ss_pred             HhCCCCCEeeEEEEEe-cCceEEEEEcCCCCcHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCC------
Confidence            4689999999999985 456899999999999999886 45789999999999999999999999999999998      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCC---CCeEecccccccccCccccccccccccccccccccccc---
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE---GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE---  155 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~---~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---  155 (251)
                                                 |+||+++.+   ..+||+|||+++..... .......||+.|+|||++.+   
T Consensus       267 ---------------------------p~NIll~~~~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~  318 (419)
T 3i6u_A          267 ---------------------------PENVLLSSQEEDCLIKITDFGHSKILGET-SLMRTLCGTPTYLAPEVLVSVGT  318 (419)
T ss_dssp             ---------------------------GGGEEESSSSSSCCEEECCSSTTTSCC------------CTTCCTTTTC----
T ss_pred             ---------------------------hHhEEEecCCCcceEEEeecccceecCCC-ccccccCCCCCccCceeeecCCC
Confidence                                       778887544   35999999999865533 22334568999999999853   


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh-hhhcCCCCCC-CCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA-IFMIPTKPPP-SFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      ..++.++||||+||++|+|++|..||........ ...+...... ....+..+++++.++|.+||+.||++|||++|++
T Consensus       319 ~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l  398 (419)
T 3i6u_A          319 AGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEAL  398 (419)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred             CCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHh
Confidence            5678899999999999999999999975433222 2222222111 1112356799999999999999999999999999


Q ss_pred             cChhhhhccC
Q psy3253         234 NHEFIQRHDT  243 (251)
Q Consensus       234 ~hp~~~~~~~  243 (251)
                      +||||+..++
T Consensus       399 ~hp~~~~~~~  408 (419)
T 3i6u_A          399 RHPWLQDEDM  408 (419)
T ss_dssp             HSGGGCCHHH
T ss_pred             CCcccCChhH
Confidence            9999987554

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.8e-41  Score=291.69  Aligned_cols=204  Identities=27%  Similarity=0.467  Sum_probs=167.3

Q ss_pred             CCCCCCccceeeeeEeeC------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      ++++||||+++++++...      ..+|+||||+ +++|.++++.  ..+++..++.++.||+.||+|||++|++|||||
T Consensus        79 ~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlk  155 (367)
T 1cm8_A           79 KHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH--EKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLK  155 (367)
T ss_dssp             HHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             HhCCCcCCCCceeeEecCCccccCceEEEEEecC-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHCCccccCcC
Confidence            468999999999999765      3469999999 7899999873  679999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.+||+|||+++.....   .....+|+.|+|||++.+
T Consensus       156 ---------------------------------p~NIll~~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE~~~~  199 (367)
T 1cm8_A          156 ---------------------------------PGNLAVNEDCELKILDFGLARQADSE---MTGYVVTRWYRAPEVILN  199 (367)
T ss_dssp             ---------------------------------GGGEEECTTCCEEECCCTTCEECCSS---CCSSCSCGGGCCTHHHHT
T ss_pred             ---------------------------------HHHEEEcCCCCEEEEeeecccccccc---cCcCcCCCCcCCHHHHhC
Confidence                                             88999999999999999999765432   233467899999999876


Q ss_pred             -CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---------------------------CCCCCC-CCCCCC
Q psy3253         156 -IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---------------------------TKPPPS-FREPDV  206 (251)
Q Consensus       156 -~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---------------------------~~~~~~-~~~~~~  206 (251)
                       ..++.++||||+||++|+|++|++||.+.+.......+.                           ...... ......
T Consensus       200 ~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (367)
T 1cm8_A          200 WMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTN  279 (367)
T ss_dssp             TTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTT
T ss_pred             CCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCC
Confidence             678999999999999999999999997765433322211                           000001 112345


Q ss_pred             CCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         207 WTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       207 ~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      .++++.+|+.+||..||++|||++|+++||||+...+.
T Consensus       280 ~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~~~~  317 (367)
T 1cm8_A          280 ASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDT  317 (367)
T ss_dssp             CCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC--
T ss_pred             CCHHHHHHHHHHccCChhHCCCHHHHhcChHHHhhcCC
Confidence            78999999999999999999999999999999876543

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=1.6e-41  Score=290.30  Aligned_cols=208  Identities=27%  Similarity=0.444  Sum_probs=173.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHH------HHHh-CCCCCHHHHHHHHHHHHHHHHHHHh-CCcccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDI------MRLR-KKTLSEDEIATILCDTLKGLEYLHL-RRKIHR   72 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~------~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~   72 (251)
                      |++++||||+++++++.+....++||||+++|+|.++      +... ...+++..++.++.|++.||.|||+ +|++||
T Consensus        97 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~  176 (348)
T 2pml_X           97 ITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHR  176 (348)
T ss_dssp             HTTCCCTTBCCCSEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECC
T ss_pred             HHhCCCCCcceEEEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeec
Confidence            4678999999999999999999999999999999998      5422 5679999999999999999999999 999999


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEV  152 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  152 (251)
                      |||                                 |+||+++.++.++|+|||.+......  ......+++.|+|||+
T Consensus       177 dl~---------------------------------p~Nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~  221 (348)
T 2pml_X          177 DVK---------------------------------PSNILMDKNGRVKLSDFGESEYMVDK--KIKGSRGTYEFMPPEF  221 (348)
T ss_dssp             CCC---------------------------------GGGEEECTTSCEEECCCTTCEECBTT--EECSSCSCGGGCCGGG
T ss_pred             CCC---------------------------------hHhEEEcCCCcEEEeccccccccccc--cccCCCCCcCccCchh
Confidence            988                                 88999999999999999999765433  2334567899999999


Q ss_pred             cccC-CCCc-chhHHHHHHHHHHHHhCCCCCCCCCc-chhhhhcCCCCCCCCCC-----------------CCCCCHHHH
Q psy3253         153 IQEI-GYDC-VADMWSLGITALEMAEGKPPYGDIHP-MRAIFMIPTKPPPSFRE-----------------PDVWTPEFI  212 (251)
Q Consensus       153 ~~~~-~~~~-~~DvwslG~~l~~l~~g~~p~~~~~~-~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~  212 (251)
                      +.+. .++. ++||||+||++|+|++|..||..... ......+..... .+..                 ...+++++.
T Consensus       222 ~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  300 (348)
T 2pml_X          222 FSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNI-EYPLDRNHFLYPLTNKKSTCSNNFLSNEDI  300 (348)
T ss_dssp             GSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTSCCC-CCCCSSSSSTTTTCC--------CCCHHHH
T ss_pred             hcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCc-CCccchhhhhccccccccccchhhcCHHHH
Confidence            9876 5666 89999999999999999999977655 333333332211 1110                 156799999


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      +++.+||+.||++|||++|+++||||+..+++
T Consensus       301 ~li~~~L~~dP~~Rps~~e~l~hp~f~~~~~~  332 (348)
T 2pml_X          301 DFLKLFLRKNPAERITSEDALKHEWLADTNIE  332 (348)
T ss_dssp             HHHHHHCCSSGGGSCCHHHHHTSGGGTTCCHH
T ss_pred             HHHHHHccCChhhCCCHHHHhcCccccCCCHH
Confidence            99999999999999999999999999987654

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=6.7e-42  Score=288.89  Aligned_cols=211  Identities=26%  Similarity=0.480  Sum_probs=168.9

Q ss_pred             CCCCCCCccceeeeeEeeCC----eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~----~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      |++++||||+++++++....    ..|+||||+++++|.++++ ....+++..++.++.|++.||.|||++|++||||| 
T Consensus        66 l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk-  143 (311)
T 3ork_A           66 AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH-TEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVK-  143 (311)
T ss_dssp             CCCCCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-
T ss_pred             HHcCCCCCcceEEEeeeccCCCCcccEEEEecCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCC-
Confidence            56889999999999987654    3499999999999999997 44679999999999999999999999999999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc---cccccccccccccccccc
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM---AKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~~y~aPE~~  153 (251)
                                                      |+||+++.++.+||+|||++.......   .......||+.|+|||++
T Consensus       144 --------------------------------p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~  191 (311)
T 3ork_A          144 --------------------------------PANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQA  191 (311)
T ss_dssp             --------------------------------GGGEEEETTSCEEECCCSCC------------------CCTTCCHHHH
T ss_pred             --------------------------------HHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHh
Confidence                                            889999999999999999997654321   122334589999999999


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         154 QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       154 ~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      .+..++.++|||||||++|+|++|..||.+............. ..+.......+++++.++|.+||+.||++||+..++
T Consensus       192 ~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~  271 (311)
T 3ork_A          192 RGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAE  271 (311)
T ss_dssp             HTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHH
T ss_pred             cCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhChhhHHH
Confidence            9989999999999999999999999999877665544332222 111112245689999999999999999999999999


Q ss_pred             hcChhhhhccCCC
Q psy3253         233 LNHEFIQRHDTDP  245 (251)
Q Consensus       233 l~hp~~~~~~~~~  245 (251)
                      +.|+|++.....+
T Consensus       272 l~~~l~~~~~~~~  284 (311)
T 3ork_A          272 MRADLVRVHNGEP  284 (311)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCC
Confidence            9999998765444

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=1.1e-40  Score=282.60  Aligned_cols=208  Identities=27%  Similarity=0.429  Sum_probs=170.7

Q ss_pred             CCCCCccceeeeeEe-----eCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           3 QCDSPYVVKYYGSYF-----KNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         3 ~l~hpniv~l~~~~~-----~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      +++||||+++++++.     .....++||||+. |+|.+++.... ..+++..++.++.|++.||.|||++|++||||| 
T Consensus        70 ~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlk-  147 (326)
T 1blx_A           70 TFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLK-  147 (326)
T ss_dssp             HTCCTTBCCEEEEEEEEECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-
T ss_pred             ccCCCCeEeeeeeeeecccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCC-
Confidence            358999999999987     4567999999997 59999997543 459999999999999999999999999999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccC
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI  156 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  156 (251)
                                                      |+||+++.++.++|+|||++...... .......+++.|+|||++.+.
T Consensus       148 --------------------------------p~Nili~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~  194 (326)
T 1blx_A          148 --------------------------------PQNILVTSSGQIKLADFGLARIYSFQ-MALTSVVVTLWYRAPEVLLQS  194 (326)
T ss_dssp             --------------------------------GGGEEECTTCCEEECSCCSCCCCCGG-GGGCCCCCCCTTCCHHHHTTC
T ss_pred             --------------------------------HHHeEEcCCCCEEEecCcccccccCC-CCccccccccceeCHHHHhcC
Confidence                                            88999999999999999999765433 223345678999999999988


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC------------------------CCCCCCCCCCCCCHHHH
Q psy3253         157 GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT------------------------KPPPSFREPDVWTPEFI  212 (251)
Q Consensus       157 ~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~  212 (251)
                      .++.++|||||||++|+|++|..||.+.........+..                        ...........+++.+.
T Consensus       195 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (326)
T 1blx_A          195 SYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGK  274 (326)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHH
T ss_pred             CCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHH
Confidence            899999999999999999999999977654433222110                        00000112355789999


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      +||.+||..||++|||++|+++||||+...+..
T Consensus       275 ~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~~~  307 (326)
T 1blx_A          275 DLLLKCLTFNPAKRISAYSALSHPYFQDLERCK  307 (326)
T ss_dssp             HHHHHHSCSSTTTSCCHHHHHTSGGGTTCCCCC
T ss_pred             HHHHHHcCCCcccCCCHHHHhcCccccccchhh
Confidence            999999999999999999999999999877654

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.4e-41  Score=289.88  Aligned_cols=203  Identities=28%  Similarity=0.462  Sum_probs=168.3

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYD   84 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~   84 (251)
                      +||||+++++++......++||||+++|+|.+++.. ...+++..++.++.||+.||.|||++|++|||||         
T Consensus       117 ~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlk---------  186 (355)
T 1vzo_A          117 QSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQ-RERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIK---------  186 (355)
T ss_dssp             TCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC---------
T ss_pred             CCCceeEEEEEEeeCceEEEEeecCCCCCHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC---------
Confidence            699999999999999999999999999999999974 4679999999999999999999999999999988         


Q ss_pred             ccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-cccccccccccccccccccc--CCCCcc
Q psy3253          85 RLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-AKRNTVIGTPFWMAPEVIQE--IGYDCV  161 (251)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~--~~~~~~  161 (251)
                                              |+||+++.++.+||+|||+++...... .......||+.|+|||++.+  ..++.+
T Consensus       187 ------------------------p~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  242 (355)
T 1vzo_A          187 ------------------------LENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKA  242 (355)
T ss_dssp             ------------------------GGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTH
T ss_pred             ------------------------HHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCch
Confidence                                    889999999999999999997654322 22334568999999999975  447889


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcch----hhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHH
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMR----AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEM  232 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~ev  232 (251)
                      +|||||||++|+|++|..||.......    ....+...   ....+..++..+.+||.+||..||++||     |++|+
T Consensus       243 ~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~el  319 (355)
T 1vzo_A          243 VDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKS---EPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEI  319 (355)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHC---CCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhcc---CCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHH
Confidence            999999999999999999996433221    11111111   1123566899999999999999999999     99999


Q ss_pred             hcChhhhhccCC
Q psy3253         233 LNHEFIQRHDTD  244 (251)
Q Consensus       233 l~hp~~~~~~~~  244 (251)
                      ++||||+..+|.
T Consensus       320 l~h~~f~~~~~~  331 (355)
T 1vzo_A          320 KEHLFFQKINWD  331 (355)
T ss_dssp             HTSGGGTTCCHH
T ss_pred             HcCcchhcCChh
Confidence            999999987764

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=100.00  E-value=4.1e-41  Score=280.81  Aligned_cols=207  Identities=27%  Similarity=0.492  Sum_probs=172.2

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+.+++|.+++.. ...+++..+..++.||+.||.|||++|++|||||      
T Consensus        76 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~------  148 (287)
T 2wei_A           76 KKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIK-RKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLK------  148 (287)
T ss_dssp             HTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC------
T ss_pred             HhccCCCccEEEEEEeCCCeEEEEEEccCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC------
Confidence            578999999999999999999999999999999998873 4579999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCC---CCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~---~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                 |+||+++.   ++.++|+|||++...... .......+++.|+|||.+.+ .+
T Consensus       149 ---------------------------p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~-~~  199 (287)
T 2wei_A          149 ---------------------------PENILLESKEKDCDIKIIDFGLSTCFQQN-TKMKDRIGTAYYIAPEVLRG-TY  199 (287)
T ss_dssp             ---------------------------GGGEEESCSSTTCCEEECSTTGGGTBCCC-SSCSCHHHHHTTCCHHHHTT-CC
T ss_pred             ---------------------------hhhEEEecCCCcccEEEeccCcceeecCC-CccccccCcccccChHHhcC-CC
Confidence                                       77777754   346999999999765433 22233457889999999865 48


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++|+||+|+++|+|++|..||.+.+.......+... ..........+++++.++|.+||..||++|||++|+++|||
T Consensus       200 ~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~  279 (287)
T 2wei_A          200 DEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPW  279 (287)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHH
T ss_pred             CCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcCHH
Confidence            99999999999999999999999877655544433222 11222233568999999999999999999999999999999


Q ss_pred             hhhccCC
Q psy3253         238 IQRHDTD  244 (251)
Q Consensus       238 ~~~~~~~  244 (251)
                      |++..++
T Consensus       280 ~~~~~~~  286 (287)
T 2wei_A          280 IQKYSSE  286 (287)
T ss_dssp             HHHHCCC
T ss_pred             HhccccC
Confidence            9988765

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=7.4e-41  Score=291.29  Aligned_cols=201  Identities=25%  Similarity=0.479  Sum_probs=160.5

Q ss_pred             CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccc
Q psy3253           6 SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDR   85 (251)
Q Consensus         6 hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~   85 (251)
                      ||||+++++++..+..+|+|||+ .+++|.+++. ....+++.++..++.||+.||.|||++||+|||||          
T Consensus       115 ~~~iv~~~~~~~~~~~~~lv~E~-~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlk----------  182 (390)
T 2zmd_A          115 SDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLK-KKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLK----------  182 (390)
T ss_dssp             CTTBCCEEEEEECSSEEEEEEEC-CSEEHHHHHH-HCSSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCC----------
T ss_pred             CCeEEEEEEEEecCCEEEEEEec-CCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC----------
Confidence            69999999999999999999995 5789999997 45689999999999999999999999999999988          


Q ss_pred             cccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccccccccccc--------
Q psy3253          86 LDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQE--------  155 (251)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~--------  155 (251)
                                             |+||+++ ++.+||+|||++........  ......||+.|+|||++.+        
T Consensus       183 -----------------------p~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  238 (390)
T 2zmd_A          183 -----------------------PANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENG  238 (390)
T ss_dssp             -----------------------GGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC-------
T ss_pred             -----------------------HHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhcccccccc
Confidence                                   8888884 57899999999976543221  1234568999999999865        


Q ss_pred             ---CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHH
Q psy3253         156 ---IGYDCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE  231 (251)
Q Consensus       156 ---~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  231 (251)
                         ..++.++|||||||++|+|++|..||...... .....+... ......+...+.++.+||.+||+.||++|||++|
T Consensus       239 ~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e  317 (390)
T 2zmd_A          239 KSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDP-NHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPE  317 (390)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCT-TSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             ccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCc-cccCCCCccchHHHHHHHHHHcccChhhCCCHHH
Confidence               36888999999999999999999999765332 222222221 1122335556889999999999999999999999


Q ss_pred             HhcChhhhhccC
Q psy3253         232 MLNHEFIQRHDT  243 (251)
Q Consensus       232 vl~hp~~~~~~~  243 (251)
                      +++||||+....
T Consensus       318 ll~hp~~~~~~~  329 (390)
T 2zmd_A          318 LLAHPYVQIQTH  329 (390)
T ss_dssp             HHTSHHHHSCC-
T ss_pred             HhhCcCccccCc
Confidence            999999986543

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.5e-42  Score=298.11  Aligned_cols=211  Identities=21%  Similarity=0.440  Sum_probs=156.2

Q ss_pred             CCCCCCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHhC--------CCCCHHHHHHHHHHHHHHHHHHHhCCcc
Q psy3253           1 MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRK--------KTLSEDEIATILCDTLKGLEYLHLRRKI   70 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~~--------~~l~~~~~~~~~~~i~~~l~~LH~~~ii   70 (251)
                      |++++||||+++++++..  ....|+||||+. ++|.+++....        ..+++..++.++.||+.||.|||++||+
T Consensus        72 l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~iv  150 (405)
T 3rgf_A           72 LRELKHPNVISLQKVFLSHADRKVWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVL  150 (405)
T ss_dssp             HHHCCCTTBCCCCEEEEETTTTEEEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEe
Confidence            356899999999999954  678999999996 58888885221        2499999999999999999999999999


Q ss_pred             ccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceec----CCCCCeEecccccccccCccc---cccccccc
Q psy3253          71 HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL----NTEGHAKLADFGVAGQLTDTM---AKRNTVIG  143 (251)
Q Consensus        71 H~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~----~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~  143 (251)
                      |||||                                 |+||++    +.++.+||+|||+++......   .......|
T Consensus       151 H~Dlk---------------------------------p~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~g  197 (405)
T 3rgf_A          151 HRDLK---------------------------------PANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVV  197 (405)
T ss_dssp             CCCCC---------------------------------GGGEEECCSSTTTTCEEECCTTCCC----------------C
T ss_pred             CCCcC---------------------------------HHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCcee
Confidence            99999                                 777777    567889999999997654321   12234568


Q ss_pred             cccccccccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcch---------h---hhhcCCCCCC-CCC-------
Q psy3253         144 TPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMR---------A---IFMIPTKPPP-SFR-------  202 (251)
Q Consensus       144 ~~~y~aPE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~---------~---~~~~~~~~~~-~~~-------  202 (251)
                      |+.|+|||++.+ ..++.++||||+||++|+|++|.+||.+.....         .   +......... .+.       
T Consensus       198 t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~  277 (405)
T 3rgf_A          198 TFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPE  277 (405)
T ss_dssp             CCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTT
T ss_pred             cCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcc
Confidence            999999999977 458999999999999999999999996543210         0   0000000000 000       


Q ss_pred             ------------------------CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         203 ------------------------EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       203 ------------------------~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                                              .....++++.+||.+||++||++|||++|+|+||||+...+..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f~~~~~~~  344 (405)
T 3rgf_A          278 HSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPT  344 (405)
T ss_dssp             HHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTSSSCCC
T ss_pred             hhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhccCCCCc
Confidence                                    0112267899999999999999999999999999999876654

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=3.2e-41  Score=292.73  Aligned_cols=208  Identities=24%  Similarity=0.417  Sum_probs=166.6

Q ss_pred             CCCCCCCccceeeeeEee--------------------------------------CCeEEEEEEccCCCCHHHHHH---
Q psy3253           1 MQQCDSPYVVKYYGSYFK--------------------------------------NTDLWIVMEYCGAGSVSDIMR---   39 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~--------------------------------------~~~~~lv~e~~~~gsL~~~~~---   39 (251)
                      |++++||||++++++|..                                      ....++||||+. |+|.+.+.   
T Consensus        54 l~~l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~  132 (383)
T 3eb0_A           54 MKVLDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFI  132 (383)
T ss_dssp             HTTCCCTTBCCEEEEEEEC-------------------------------------CCEEEEEECCCS-EEHHHHHHHHH
T ss_pred             HHHcCCCCccchhheeeecCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHH
Confidence            468899999999999843                                      334899999997 58887775   


Q ss_pred             HhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecC-CCC
Q psy3253          40 LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN-TEG  118 (251)
Q Consensus        40 ~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~-~~~  118 (251)
                      ..+..+++..++.++.||+.||.|||++|++|||||                                 |+||+++ .++
T Consensus       133 ~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi~H~Dik---------------------------------p~Nil~~~~~~  179 (383)
T 3eb0_A          133 RSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIK---------------------------------PQNLLVNSKDN  179 (383)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCC---------------------------------GGGEEEETTTT
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHHHHCcCccCccC---------------------------------HHHEEEcCCCC
Confidence            245789999999999999999999999999999988                                 8888886 578


Q ss_pred             CeEecccccccccCcccccccccccccccccccccccC-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC--
Q psy3253         119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT--  195 (251)
Q Consensus       119 ~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~--  195 (251)
                      .+||+|||+++..... .......+|+.|+|||++.+. .++.++||||+||++|+|++|.+||.+.+.......+..  
T Consensus       180 ~~kl~Dfg~a~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~  258 (383)
T 3eb0_A          180 TLKLCDFGSAKKLIPS-EPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIM  258 (383)
T ss_dssp             EEEECCCTTCEECCTT-SCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCcccCCC-CCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHh
Confidence            8999999999765433 223345678899999998764 489999999999999999999999987655443322210  


Q ss_pred             -C----------------CCCC-------CCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         196 -K----------------PPPS-------FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       196 -~----------------~~~~-------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                       .                ..+.       ...+..+++++.+||.+||+.||++|||++|+++||||+....
T Consensus       259 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  330 (383)
T 3eb0_A          259 GTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHLRN  330 (383)
T ss_dssp             CCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHHHH
T ss_pred             CCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHHHh
Confidence             0                0000       0013457899999999999999999999999999999987543

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=100.00  E-value=6.4e-41  Score=283.99  Aligned_cols=210  Identities=23%  Similarity=0.429  Sum_probs=160.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeE------EEEEEccCCCCHHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHHhCCc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDL------WIVMEYCGAGSVSDIMRLRK-----KTLSEDEIATILCDTLKGLEYLHLRRK   69 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~------~lv~e~~~~gsL~~~~~~~~-----~~l~~~~~~~~~~~i~~~l~~LH~~~i   69 (251)
                      |++++||||+++++++......      ++||||+.+|+|.+++....     ..+++..+..++.|++.||.|||++|+
T Consensus        79 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i  158 (323)
T 3qup_A           79 MKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNF  158 (323)
T ss_dssp             HTTCCCTTBCCCCEEEECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHCCCCceehhhceeeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCc
Confidence            4678999999999999876554      99999999999999996332     269999999999999999999999999


Q ss_pred             cccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccc
Q psy3253          70 IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFW  147 (251)
Q Consensus        70 iH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y  147 (251)
                      +|||||                                 |+||+++.++.+||+|||++........  ......+++.|
T Consensus       159 vH~Dik---------------------------------p~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y  205 (323)
T 3qup_A          159 IHRDLA---------------------------------ARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKW  205 (323)
T ss_dssp             CCSCCS---------------------------------GGGEEECTTSCEEECCCCC-----------------CCGGG
T ss_pred             ccCCCC---------------------------------cceEEEcCCCCEEEeeccccccccccccccccccccCcccc
Confidence            999988                                 8899999999999999999976543221  12233457789


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         148 MAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       148 ~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      +|||.+.+..++.++||||+||++|+|++ |..||.+.........+.....  ...+..+++++.+++.+||+.||++|
T Consensus       206 ~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~dp~~R  283 (323)
T 3qup_A          206 LALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGNR--LKQPPECMEEVYDLMYQCWSADPKQR  283 (323)
T ss_dssp             CCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCC--CCCCTTCCHHHHHHHHHTTCSSGGGS
T ss_pred             cCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCCC--CCCCCccCHHHHHHHHHHccCChhhC
Confidence            99999999899999999999999999999 9999988777666555444432  23356789999999999999999999


Q ss_pred             CC-------HHHHhcChhhhhccCCC
Q psy3253         227 AT-------ASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       227 ps-------~~evl~hp~~~~~~~~~  245 (251)
                      ||       ++++++|||+.....++
T Consensus       284 ps~~~l~~~l~~~l~~~~~~~~~~~p  309 (323)
T 3qup_A          284 PSFTCLRMELENILGHLSVLSTSQDP  309 (323)
T ss_dssp             CCHHHHHHHHHHHHHC----------
T ss_pred             cCHHHHHHHHHHHHHHhhhcCCCCCC
Confidence            99       78889999998766554

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=4.9e-41  Score=277.69  Aligned_cols=200  Identities=25%  Similarity=0.453  Sum_probs=172.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....++||||+++++|.+++......+++..+..++.|++.||.|||++|++|||||     
T Consensus        59 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dik-----  133 (269)
T 4hcu_A           59 MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLA-----  133 (269)
T ss_dssp             HHTCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HHhCCCCCEeeEEEEEecCCceEEEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcc-----
Confidence            357899999999999999999999999999999999998666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++|+|||++........ ......+++.|+|||.+.+..++
T Consensus       134 ----------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  185 (269)
T 4hcu_A          134 ----------------------------ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYS  185 (269)
T ss_dssp             ----------------------------GGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCC
T ss_pred             ----------------------------hheEEEcCCCCEEeccccccccccccccccccCcccccccCCHHHhcCCCCC
Confidence                                        8899998889999999999976543221 22334457789999999988999


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++|+||+|+++|+|++ |..||...........+.....  ...+...++++.+++.+||+.||++|||++|+++|
T Consensus       186 ~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~  260 (269)
T 4hcu_A          186 SKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFR--LYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQ  260 (269)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCC--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             chhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCcc--CCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence            99999999999999999 9999988777666555544422  22356679999999999999999999999999975

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=4.5e-41  Score=285.81  Aligned_cols=199  Identities=24%  Similarity=0.387  Sum_probs=169.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...|+||||+++|+|.++++.....+++..+..++.|++.||.|||++|++|||||     
T Consensus       104 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk-----  178 (325)
T 3kul_A          104 MGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLA-----  178 (325)
T ss_dssp             HTTCCCTTBCCEEEEECGGGCCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----
T ss_pred             HHhCCCCCCCcEEEEEEeCCccEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCC-----
Confidence            467899999999999999999999999999999999998666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc---ccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.++|+|||+++........   .....+|+.|+|||++.+..
T Consensus       179 ----------------------------p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  230 (325)
T 3kul_A          179 ----------------------------ARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRT  230 (325)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCE
T ss_pred             ----------------------------cceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCC
Confidence                                        88999999999999999999765432211   12233566899999999889


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++.++|||||||++|+|++ |..||.+.........+....  ....+..+++++.++|.+||..||++|||++|+++
T Consensus       231 ~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~  306 (325)
T 3kul_A          231 FSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGY--RLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVS  306 (325)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCC--CCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            9999999999999999999 999998877766665554443  22346678999999999999999999999999985

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=1.1e-41  Score=282.72  Aligned_cols=207  Identities=29%  Similarity=0.540  Sum_probs=171.4

Q ss_pred             CCCCCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHHHHHHhCC-----ccc
Q psy3253           2 QQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLR---KKTLSEDEIATILCDTLKGLEYLHLRR-----KIH   71 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~---~~~l~~~~~~~~~~~i~~~l~~LH~~~-----iiH   71 (251)
                      ++++||||+++++++..  ....++||||+++++|.+++...   ...+++..+..++.|++.||.|||++|     ++|
T Consensus        60 ~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH  139 (279)
T 2w5a_A           60 RELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLH  139 (279)
T ss_dssp             HHCCCTTBCCEEEEEEEGGGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred             HhcCCCCCCeEEEEEecCCCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEE
Confidence            46899999999998854  56899999999999999999643   345999999999999999999999999     999


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPE  151 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  151 (251)
                      ||||                                 |+||+++.++.++|+|||.+..............+++.|+|||
T Consensus       140 ~dl~---------------------------------p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  186 (279)
T 2w5a_A          140 RDLK---------------------------------PANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPE  186 (279)
T ss_dssp             CCCS---------------------------------GGGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHH
T ss_pred             eccc---------------------------------hhhEEEcCCCCEEEecCchheeeccccccccccCCCccccChH
Confidence            9988                                 8899999999999999999976544322233446789999999


Q ss_pred             ccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHH
Q psy3253         152 VIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE  231 (251)
Q Consensus       152 ~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  231 (251)
                      .+.+..++.++||||||+++|+|++|..||...+.......+......  ..+..+++++.+++.+||+.||++|||++|
T Consensus       187 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rps~~~  264 (279)
T 2w5a_A          187 QMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFR--RIPYRYSDELNEIITRMLNLKDYHRPSVEE  264 (279)
T ss_dssp             HHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCC--CCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             HhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhcccc--cCCcccCHHHHHHHHHHcCCCcccCCCHHH
Confidence            999888999999999999999999999999877665554444333222  235568999999999999999999999999


Q ss_pred             HhcChhhhhccC
Q psy3253         232 MLNHEFIQRHDT  243 (251)
Q Consensus       232 vl~hp~~~~~~~  243 (251)
                      +++|+|+.....
T Consensus       265 ll~~~~~~~~~~  276 (279)
T 2w5a_A          265 ILENPLILEHHH  276 (279)
T ss_dssp             HHTSTTCCGGGS
T ss_pred             HHhChhhhhhcc
Confidence            999999976543

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=5.7e-41  Score=290.07  Aligned_cols=199  Identities=24%  Similarity=0.468  Sum_probs=169.4

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHH
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLH   65 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH   65 (251)
                      +++ +||||+++++++.+...+|+||||+.+|+|.+++....               ..+++.+++.++.||+.||.|||
T Consensus       141 ~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH  220 (370)
T 2psq_A          141 KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA  220 (370)
T ss_dssp             HHSCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCEeeEEEEEccCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            356 89999999999999999999999999999999997543               35899999999999999999999


Q ss_pred             hCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccc
Q psy3253          66 LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIG  143 (251)
Q Consensus        66 ~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~  143 (251)
                      ++|++|||||                                 |+||+++.++.+||+|||+++.......  ......+
T Consensus       221 ~~~ivHrDlk---------------------------------p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~  267 (370)
T 2psq_A          221 SQKCIHRDLA---------------------------------ARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRL  267 (370)
T ss_dssp             HTTEECSCCC---------------------------------GGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTS
T ss_pred             hCCeeccccc---------------------------------hhhEEECCCCCEEEccccCCcccCcccceecccCCCc
Confidence            9999999988                                 8899999999999999999976543221  1223346


Q ss_pred             ccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcC
Q psy3253         144 TPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN  222 (251)
Q Consensus       144 ~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  222 (251)
                      ++.|+|||++.+..++.++|||||||++|+|++ |..||.+.........+.....  ...+..+++++.++|.+||+.|
T Consensus       268 t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~d  345 (370)
T 2psq_A          268 PVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHR--MDKPANCTNELYMMMRDCWHAV  345 (370)
T ss_dssp             CGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCC--CCCCTTSCHHHHHHHHHHTCSS
T ss_pred             ccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHhcCCC--CCCCCCCCHHHHHHHHHHcCCC
Confidence            778999999999899999999999999999999 9999987766665554444432  2345678999999999999999


Q ss_pred             cCccCCHHHHhcC
Q psy3253         223 PEERATASEMLNH  235 (251)
Q Consensus       223 p~~Rps~~evl~h  235 (251)
                      |++|||++|++++
T Consensus       346 P~~Rpt~~ell~~  358 (370)
T 2psq_A          346 PSQRPTFKQLVED  358 (370)
T ss_dssp             GGGSCCHHHHHHH
T ss_pred             hhhCcCHHHHHHH
Confidence            9999999999864

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=4.5e-42  Score=305.18  Aligned_cols=202  Identities=25%  Similarity=0.450  Sum_probs=157.2

Q ss_pred             CCCCCCccceeeeeEeeC------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      ++++||||+++++++...      .+.|+||||+++ +|.+.+.   ..+++..++.++.||+.||+|||++||+|||||
T Consensus       116 ~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~-~l~~~~~---~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlk  191 (464)
T 3ttj_A          116 KCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDA-NLCQVIQ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK  191 (464)
T ss_dssp             HHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSE-EHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             HhCCCCCCCcEEEEEccCCccccCCeEEEEEeCCCC-CHHHHHh---hcCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            468999999999999654      467999999975 6766664   459999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.+||+|||+++..... .......+|+.|+|||++.+
T Consensus       192 ---------------------------------p~NIll~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~  237 (464)
T 3ttj_A          192 ---------------------------------PSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVILG  237 (464)
T ss_dssp             ---------------------------------GGGEEECTTSCEEECCCCCC-----C-CCC----CCCTTCCHHHHTT
T ss_pred             ---------------------------------hHhEEEeCCCCEEEEEEEeeeecCCC-cccCCCcccccccCHHHHcC
Confidence                                             88999999999999999999765432 22344568999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CC------------------CCCCC---C----CCC-
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KP------------------PPSFR---E----PDV-  206 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~------------------~~~~~---~----~~~-  206 (251)
                      ..++.++||||+||++|+|++|++||.+.+.......+..   .+                  .+...   .    +.. 
T Consensus       238 ~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (464)
T 3ttj_A          238 MGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSL  317 (464)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccc
Confidence            9999999999999999999999999987654333222110   00                  00000   0    000 


Q ss_pred             ----------CCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         207 ----------WTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       207 ----------~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                                .++++.+||.+||+.||++|||++|+|+||||+..
T Consensus       318 ~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~~~~~  362 (464)
T 3ttj_A          318 FPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVW  362 (464)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGG
T ss_pred             cccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcChhhhhc
Confidence                      14678999999999999999999999999999854

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=1e-41  Score=289.05  Aligned_cols=182  Identities=24%  Similarity=0.388  Sum_probs=144.1

Q ss_pred             EEEEEEccCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchh
Q psy3253          22 LWIVMEYCGAGSVSDIMRLRK--KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQ   99 (251)
Q Consensus        22 ~~lv~e~~~~gsL~~~~~~~~--~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~   99 (251)
                      .++|||||++++|.+++....  ....+..++.++.||+.||.|||++|++|||||                        
T Consensus       136 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk------------------------  191 (332)
T 3qd2_B          136 LYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLK------------------------  191 (332)
T ss_dssp             EEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTEECCCCC------------------------
T ss_pred             EEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHhCCeeecCCC------------------------
Confidence            899999999999999997432  235666789999999999999999999999988                        


Q ss_pred             hhhhhhhcccCceecCCCCCeEecccccccccCccc------------ccccccccccccccccccccCCCCcchhHHHH
Q psy3253         100 IYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM------------AKRNTVIGTPFWMAPEVIQEIGYDCVADMWSL  167 (251)
Q Consensus       100 ~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~------------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvwsl  167 (251)
                               |+||+++.++.+||+|||+++......            .......||+.|+|||++.+..++.++||||+
T Consensus       192 ---------p~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~sl  262 (332)
T 3qd2_B          192 ---------PSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSL  262 (332)
T ss_dssp             ---------GGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHH
T ss_pred             ---------cccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHH
Confidence                     889999999999999999997665432            12233468999999999999899999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         168 GITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       168 G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ||++|+|++|..|+....  ...........+  ......++++.++|.+||+.||++|||++|+++||||++
T Consensus       263 G~il~el~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~~~f~~  331 (332)
T 3qd2_B          263 GLILFELLYSFSTQMERV--RIITDVRNLKFP--LLFTQKYPQEHMMVQDMLSPSPTERPEATDIIENAIFEN  331 (332)
T ss_dssp             HHHHHHHHSCCCCHHHHH--HHHHHHHTTCCC--HHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHHSTTCCC
T ss_pred             HHHHHHHHHcCCChhHHH--HHHHHhhccCCC--cccccCChhHHHHHHHHccCCCCcCCCHHHHhhchhhhc
Confidence            999999999877653211  111111111111  112345688899999999999999999999999999985

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=5.6e-41  Score=295.49  Aligned_cols=206  Identities=27%  Similarity=0.408  Sum_probs=164.4

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ..+||||+++++++....+.|+||||+. ++|.+++.... ..+++..++.++.||+.||.|||++||+|||||      
T Consensus       155 ~~~~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlK------  227 (429)
T 3kvw_A          155 KDNTMNVIHMLENFTFRNHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLK------  227 (429)
T ss_dssp             TTSCSCBCCEEEEEEETTEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCS------
T ss_pred             ccCCcCEEEEEeecccCCeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC------
Confidence            4589999999999999999999999995 69999987544 469999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCC--eEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH--AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                 |+||+++.++.  +||+|||+++....   ......+|+.|+|||++.+..++
T Consensus       228 ---------------------------p~NILl~~~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~  277 (429)
T 3kvw_A          228 ---------------------------PENILLKQQGRSGIKVIDFGSSCYEHQ---RVYTYIQSRFYRAPEVILGARYG  277 (429)
T ss_dssp             ---------------------------GGGEEESSTTSCCEEECCCTTCEETTC---CCCSSCSCGGGCCHHHHHTBCCC
T ss_pred             ---------------------------HHHeEEccCCCcceEEeecccceecCC---cccccCCCCCccChHHHhCCCCC
Confidence                                       88889888876  99999999965432   22345678999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC----------------------CCCCC-----------------
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT----------------------KPPPS-----------------  200 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~----------------------~~~~~-----------------  200 (251)
                      .++|||||||++|+|++|.+||.+.+.......+..                      ...+.                 
T Consensus       278 ~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (429)
T 3kvw_A          278 MPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGG  357 (429)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC--CEECCE
T ss_pred             chHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCccccccccccccccccccc
Confidence            999999999999999999999977654332211100                      00000                 


Q ss_pred             ------------C-----CCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         201 ------------F-----REPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       201 ------------~-----~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                                  .     ......++++.+||.+||++||++|||++|+|+||||++....+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hpw~~~~~~~~  419 (429)
T 3kvw_A          358 RSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRRLPKP  419 (429)
T ss_dssp             ECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTTC------
T ss_pred             ccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCCHHHHhCChhhccCCCCC
Confidence                        0     00123478899999999999999999999999999999765443

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=100.00  E-value=4.8e-41  Score=291.18  Aligned_cols=199  Identities=24%  Similarity=0.438  Sum_probs=170.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...|+||||+++|+|.++++..+..+++..+..++.|++.||.|||++|++|||||     
T Consensus       166 l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlk-----  240 (377)
T 3cbl_A          166 LKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLA-----  240 (377)
T ss_dssp             HTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----
T ss_pred             HHhCCCCCEEEEEEEEecCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccC-----
Confidence            468899999999999999999999999999999999998666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--ccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.+||+|||+++........  .....++..|+|||++.+..+
T Consensus       241 ----------------------------p~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  292 (377)
T 3cbl_A          241 ----------------------------ARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRY  292 (377)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEE
T ss_pred             ----------------------------HHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCC
Confidence                                        88999999999999999999754432111  122235677999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|||||||++|++++ |..||.+.........+....  ....+..+++++.++|.+||+.||++|||++|+++
T Consensus       293 ~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~  367 (377)
T 3cbl_A          293 SSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGG--RLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQ  367 (377)
T ss_dssp             EHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC--CCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence            999999999999999998 999998876665554444332  22346678999999999999999999999999985

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-41  Score=298.34  Aligned_cols=207  Identities=23%  Similarity=0.391  Sum_probs=158.0

Q ss_pred             CC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           3 QC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++ +||||+++++++.+....|+|||||. |+|.+++......+.+..+..++.||+.||.|||++||+|||||      
T Consensus        73 ~l~~HpnIv~l~~~~~~~~~~~lv~E~~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlK------  145 (432)
T 3p23_A           73 ESDEHPNVIRYFCTEKDRQFQYIAIELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLK------  145 (432)
T ss_dssp             HSCCCTTBCCEEEEEEETTEEEEEEECCS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCS------
T ss_pred             hccCCCCcCeEEEEEecCCEEEEEEECCC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCcCEeCCCC------
Confidence            45 79999999999999999999999996 59999998666667777788999999999999999999999999      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecC-----CCCCeEecccccccccCccc---cccccccccccccccccc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN-----TEGHAKLADFGVAGQLTDTM---AKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~-----~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~~y~aPE~~  153 (251)
                                                 |+||+++     ....++|+|||+++......   .......||+.|+|||++
T Consensus       146 ---------------------------p~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l  198 (432)
T 3p23_A          146 ---------------------------PHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEML  198 (432)
T ss_dssp             ---------------------------TTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGT
T ss_pred             ---------------------------HHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhh
Confidence                                       5555553     22357899999997654321   123345689999999999


Q ss_pred             c---cCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         154 Q---EIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       154 ~---~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                      .   ...++.++||||+||++|+|++ |..||..........................+..+.+||.+||+.||++|||+
T Consensus       199 ~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~  278 (432)
T 3p23_A          199 SEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSA  278 (432)
T ss_dssp             SCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHHTTCCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCH
T ss_pred             hcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHhccCCccccCccccccHHHHHHHHHHHhCCHhhCCCH
Confidence            7   4567889999999999999999 99999665444333322222222222223345668999999999999999999


Q ss_pred             HHHhcChhhhhccC
Q psy3253         230 SEMLNHEFIQRHDT  243 (251)
Q Consensus       230 ~evl~hp~~~~~~~  243 (251)
                      +|+++||||...+|
T Consensus       279 ~evl~hp~f~~~~~  292 (432)
T 3p23_A          279 KHVLKHPFFWSLEK  292 (432)
T ss_dssp             HHHHTSTTTCCHHH
T ss_pred             HHHHhCccccChHH
Confidence            99999999976443

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.9e-41  Score=291.64  Aligned_cols=204  Identities=23%  Similarity=0.386  Sum_probs=172.2

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC------CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK------KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      ++++||||+++++++.+....++||||+.+|+|.+++....      ..+++.+++.++.||+.||.|||++||+|||||
T Consensus       129 ~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk  208 (367)
T 3l9p_A          129 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIA  208 (367)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             HhCCCCCCCeEEEEEecCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCC
Confidence            46799999999999999999999999999999999997554      458999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCC---CeEecccccccccCcc--cccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG---HAKLADFGVAGQLTDT--MAKRNTVIGTPFWMAP  150 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~---~~kl~dfg~~~~~~~~--~~~~~~~~~~~~y~aP  150 (251)
                                                       |+||+++.++   .+||+|||+++.....  ........+|+.|+||
T Consensus       209 ---------------------------------p~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aP  255 (367)
T 3l9p_A          209 ---------------------------------ARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPP  255 (367)
T ss_dssp             ---------------------------------GGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCH
T ss_pred             ---------------------------------hhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECH
Confidence                                             8888887544   5999999999754321  1223334568899999


Q ss_pred             cccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         151 EVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       151 E~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                      |++.+..++.++|||||||++|+|++ |..||.+.........+......  ..+..+++.+.+++.+||+.||++|||+
T Consensus       256 E~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~l~~li~~~l~~dP~~Rps~  333 (367)
T 3l9p_A          256 EAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRM--DPPKNCPGPVYRIMTQCWQHQPEDRPNF  333 (367)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             HHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--CCCccCCHHHHHHHHHHcCCCHhHCcCH
Confidence            99998899999999999999999998 99999887776666555444322  2356789999999999999999999999


Q ss_pred             HHHhcChhhhh
Q psy3253         230 SEMLNHEFIQR  240 (251)
Q Consensus       230 ~evl~hp~~~~  240 (251)
                      +|++++.++-.
T Consensus       334 ~eil~~l~~~~  344 (367)
T 3l9p_A          334 AIILERIEYCT  344 (367)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987643

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=279.44  Aligned_cols=208  Identities=25%  Similarity=0.482  Sum_probs=168.9

Q ss_pred             CCCCCCCccceeeeeEe--eCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYF--KNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~--~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      |++++||||+++++++.  +....++||||+.++ |.+++... ...+++..+..++.||+.||.|||++|++|||||  
T Consensus        60 l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlk--  136 (305)
T 2wtk_C           60 LRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIK--  136 (305)
T ss_dssp             HTTCCCTTBCCEEEEEECC---CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS--
T ss_pred             HHhcCCCCeeEEEEEEEcCCCCeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCC--
Confidence            46789999999999984  456899999999775 77777533 4679999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc--ccccccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT--MAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                     |+||+++.++.++|+|||.+......  ........+++.|+|||++.+
T Consensus       137 -------------------------------p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  185 (305)
T 2wtk_C          137 -------------------------------PGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANG  185 (305)
T ss_dssp             -------------------------------GGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTC
T ss_pred             -------------------------------cccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccC
Confidence                                           88999999999999999999765422  112234457899999999976


Q ss_pred             CC--CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         156 IG--YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       156 ~~--~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      ..  ++.++||||+|+++|+|++|..||.+.+.......+...   ....+..+++.+.+++.+||+.||++|||++|++
T Consensus       186 ~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~---~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll  262 (305)
T 2wtk_C          186 LDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKG---SYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIR  262 (305)
T ss_dssp             CSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHC---CCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred             cccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcC---CCCCCCccCHHHHHHHHHHccCChhhCCCHHHHh
Confidence            44  377999999999999999999999876655544443332   2233567899999999999999999999999999


Q ss_pred             cChhhhhccCCC
Q psy3253         234 NHEFIQRHDTDP  245 (251)
Q Consensus       234 ~hp~~~~~~~~~  245 (251)
                      +||||+.....+
T Consensus       263 ~~~~~~~~~~~~  274 (305)
T 2wtk_C          263 QHSWFRKKHPPA  274 (305)
T ss_dssp             HSHHHHSCCCC-
T ss_pred             cCcccccCCCCc
Confidence            999998766544

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=100.00  E-value=2.4e-40  Score=280.20  Aligned_cols=212  Identities=20%  Similarity=0.375  Sum_probs=177.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------CCCCHHHHHHHHHHHHHHHHHHHhCCccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------KTLSEDEIATILCDTLKGLEYLHLRRKIH   71 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH   71 (251)
                      |++++||||+++++++.++...++||||+.+|+|.+++....         ..+++..+..++.|++.||.|||++|++|
T Consensus        82 l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H  161 (322)
T 1p4o_A           82 MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVH  161 (322)
T ss_dssp             GGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBC
T ss_pred             HHhcCCCCEeeeEEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence            467899999999999999999999999999999999997432         46799999999999999999999999999


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMA  149 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~a  149 (251)
                      ||||                                 |+||+++.++.++|+|||++........  ......+++.|+|
T Consensus       162 ~dik---------------------------------p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a  208 (322)
T 1p4o_A          162 RDLA---------------------------------ARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMS  208 (322)
T ss_dssp             SCCS---------------------------------GGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCC
T ss_pred             CCCc---------------------------------cceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccC
Confidence            9988                                 8899999999999999999975543221  2233456788999


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC
Q psy3253         150 PEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT  228 (251)
Q Consensus       150 PE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  228 (251)
                      ||++.+..++.++||||+||++|+|++ |..||.+.+.......+.....  ...+..+++.+.+++.+||+.||++|||
T Consensus       209 PE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~dp~~Rps  286 (322)
T 1p4o_A          209 PESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGL--LDKPDNCPDMLFELMRMCWQYNPKMRPS  286 (322)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCC--CCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             hhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHHcCCc--CCCCCCCCHHHHHHHHHHcCCCcccCcC
Confidence            999988889999999999999999999 8999987766655544433322  2235678999999999999999999999


Q ss_pred             HHHHhcC------hhhhhccCCCCC
Q psy3253         229 ASEMLNH------EFIQRHDTDPSQ  247 (251)
Q Consensus       229 ~~evl~h------p~~~~~~~~~~~  247 (251)
                      ++|++++      ++|+..++....
T Consensus       287 ~~e~l~~L~~~~~~~~~~~~~~~~~  311 (322)
T 1p4o_A          287 FLEIISSIKEEMEPGFREVSFYYSE  311 (322)
T ss_dssp             HHHHHHHHGGGSCTTHHHHCSTTST
T ss_pred             HHHHHHHHHHhhccCCccccccccc
Confidence            9999887      788876665544

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=3.6e-41  Score=291.30  Aligned_cols=202  Identities=24%  Similarity=0.422  Sum_probs=155.9

Q ss_pred             CCCCCCccceeeeeEeeCC------eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNT------DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~------~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      ++++||||+++++++....      ..|+||||+++ +|.+++.   ..+++..+..++.||+.||.|||++|++|||||
T Consensus        79 ~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~---~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlk  154 (371)
T 2xrw_A           79 KCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA-NLCQVIQ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK  154 (371)
T ss_dssp             HHCCCTTBCCEEEEECSCCSTTTCCEEEEEEECCSE-EHHHHHH---SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             HhcCCCCccceEEeeccccccccccceEEEEEcCCC-CHHHHHh---hccCHHHHHHHHHHHHHHHHHHHHCCeecccCC
Confidence            4689999999999997654      78999999964 8888875   469999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.+||+|||++...... .......+|+.|+|||++.+
T Consensus       155 ---------------------------------p~NIl~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~  200 (371)
T 2xrw_A          155 ---------------------------------PSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVILG  200 (371)
T ss_dssp             ---------------------------------GGGEEECTTSCEEECCCCC-----------------CTTCCHHHHTT
T ss_pred             ---------------------------------HHHEEEcCCCCEEEEEeecccccccc-cccCCceecCCccCHHHhcC
Confidence                                             88999999999999999999765432 12234568899999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCC---------------------CCC------------
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPP---------------------SFR------------  202 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~---------------------~~~------------  202 (251)
                      ..++.++||||+||++|+|++|..||.+.+.......+......                     .+.            
T Consensus       201 ~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (371)
T 2xrw_A          201 MGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVL  280 (371)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGG
T ss_pred             CCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhccccc
Confidence            89999999999999999999999999876654433322211100                     000            


Q ss_pred             CCC------CCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         203 EPD------VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       203 ~~~------~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      .+.      ..++++.+||.+||+.||++|||++|+++||||+..
T Consensus       281 ~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  325 (371)
T 2xrw_A          281 FPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVW  325 (371)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             CcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcchhhh
Confidence            000      014678999999999999999999999999999864

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=5.3e-41  Score=288.87  Aligned_cols=207  Identities=22%  Similarity=0.386  Sum_probs=160.2

Q ss_pred             CCCCCCccceeeeeEee-----CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFK-----NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~-----~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      ++++||||+++++++..     ....|+||||+. |+|.+++......+++..+..++.||+.||.|||++|++||||| 
T Consensus        84 ~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlk-  161 (362)
T 3pg1_A           84 NHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLH-  161 (362)
T ss_dssp             HHCCCTTBCCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-
T ss_pred             HhCCCcCccceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCC-
Confidence            46899999999999854     346899999997 69999887666689999999999999999999999999999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-  155 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  155 (251)
                                                      |+||+++.++.++|+|||++...... .......+++.|+|||++.+ 
T Consensus       162 --------------------------------p~NIl~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~  208 (362)
T 3pg1_A          162 --------------------------------PGNILLADNNDITICDFNLAREDTAD-ANKTHYVTHRWYRAPELVMQF  208 (362)
T ss_dssp             --------------------------------GGGEEECTTCCEEECCTTC----------------CGGGCCHHHHTTC
T ss_pred             --------------------------------hHHEEEcCCCCEEEEecCcccccccc-cccceecccceecCcHHhcCC
Confidence                                            88999999999999999999754432 22334567889999999876 


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC-----------------------CCCCCC------CCCCC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT-----------------------KPPPSF------REPDV  206 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~-----------------------~~~~~~------~~~~~  206 (251)
                      ..++.++||||+||++|++++|..||.+.+.......+..                       ......      .....
T Consensus       209 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (362)
T 3pg1_A          209 KGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPT  288 (362)
T ss_dssp             TTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTT
T ss_pred             CCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCC
Confidence            6789999999999999999999999977553332221100                       000000      01245


Q ss_pred             CCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         207 WTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       207 ~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                      .++.+.+||.+||+.||++|||++|+++||||+....
T Consensus       289 ~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  325 (362)
T 3pg1_A          289 ADPVALDLIAKMLEFNPQRRISTEQALRHPYFESLFD  325 (362)
T ss_dssp             SCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             CCHHHHHHHHHHhcCChhhCCCHHHHHcCchhhhccC
Confidence            6889999999999999999999999999999997643

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=100.00  E-value=1.3e-40  Score=281.11  Aligned_cols=207  Identities=33%  Similarity=0.642  Sum_probs=162.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR-RKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~-~iiH~dik~~Ni~   80 (251)
                      +.++||||+++++++.++...++||||+ ++.+..+.......+++..+..++.|++.||.|||++ |++|||||     
T Consensus        79 ~~~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlk-----  152 (318)
T 2dyl_A           79 KSHDCPYIVQCFGTFITNTDVFIAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVK-----  152 (318)
T ss_dssp             HTTTCTTBCCEEEEEECSSEEEEEECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----
T ss_pred             HhcCCCceeeEEEEEecCCcEEEEEecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCC-----
Confidence            4579999999999999999999999999 5677777665578899999999999999999999996 99999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc-----c
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----E  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~  155 (251)
                                                  |+||+++.++.++|+|||++....... ......+++.|+|||++.     .
T Consensus       153 ----------------------------p~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~  203 (318)
T 2dyl_A          153 ----------------------------PSNILLDERGQIKLCDFGISGRLVDDK-AKDRSAGCAAYMAPERIDPPDPTK  203 (318)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCTTC---------------CCTTCCHHHHC------
T ss_pred             ----------------------------HHHEEECCCCCEEEEECCCchhccCCc-cccccCCCccccChhhcccccccc
Confidence                                        889999999999999999997654322 223346789999999994     4


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCC-cchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIH-PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ..++.++||||+||++|+|++|..||.... .......+.............+++++.++|.+||..||++|||++|+++
T Consensus       204 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          204 PDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             cCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCCCCccCCCCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence            568889999999999999999999997643 2233333333333333334568999999999999999999999999999


Q ss_pred             ChhhhhccC
Q psy3253         235 HEFIQRHDT  243 (251)
Q Consensus       235 hp~~~~~~~  243 (251)
                      ||||++...
T Consensus       284 h~~~~~~~~  292 (318)
T 2dyl_A          284 HSFIKRYET  292 (318)
T ss_dssp             SHHHHHHHH
T ss_pred             CHHHHhccc
Confidence            999987543

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=100.00  E-value=8.6e-41  Score=275.93  Aligned_cols=199  Identities=26%  Similarity=0.458  Sum_probs=170.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+++++|.+++......+++..+..++.|++.||.|||++|++|||||      
T Consensus        58 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dik------  131 (268)
T 3sxs_A           58 MKLSHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLA------  131 (268)
T ss_dssp             HHCCCTTBCCEEEEECSSSSEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCS------
T ss_pred             HhCCCCCEeeEEEEEccCCceEEEEEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcC------
Confidence            46889999999999999999999999999999999998766779999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                 |+||+++.++.++|+|||.+........ ......+++.|+|||.+.+..++.
T Consensus       132 ---------------------------p~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  184 (268)
T 3sxs_A          132 ---------------------------ARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSS  184 (268)
T ss_dssp             ---------------------------GGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEET
T ss_pred             ---------------------------cceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCch
Confidence                                       8899999999999999999975543321 222334567799999999888999


Q ss_pred             chhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         161 VADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++||||+|+++|++++ |..||...........+.....  ...+...++++.+++.+||+.||++|||++|++++
T Consensus       185 ~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  258 (268)
T 3sxs_A          185 KSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHR--LYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSS  258 (268)
T ss_dssp             THHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCC--CCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCC--CCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            9999999999999999 9999987766665554444332  22356679999999999999999999999999965

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=6.6e-41  Score=286.00  Aligned_cols=208  Identities=28%  Similarity=0.401  Sum_probs=147.5

Q ss_pred             CCCCCccceeeeeEee----CCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           3 QCDSPYVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~----~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      .++||||+++++++..    +...++||||+++|+|.+++.... ..+++.+++.++.||+.||.|||++|++|||||  
T Consensus        78 ~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlk--  155 (336)
T 3fhr_A           78 ASGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVK--  155 (336)
T ss_dssp             HTTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCS--
T ss_pred             hcCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC--
Confidence            4689999999999976    455899999999999999997443 469999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCC---CCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~---~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                                                     |+||+++.   ++.++|+|||++......  ......+|+.|+|||++.
T Consensus       156 -------------------------------p~NIll~~~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~t~~y~aPE~~~  202 (336)
T 3fhr_A          156 -------------------------------PENLLYTSKEKDAVLKLTDFGFAKETTQN--ALQTPCYTPYYVAPEVLG  202 (336)
T ss_dssp             -------------------------------GGGEEESCSSTTCCEEECCCTTCEEC-----------------------
T ss_pred             -------------------------------HHHEEEEecCCCceEEEeccccceecccc--ccccCCCCcCccChhhhC
Confidence                                           77888765   455999999999765432  223446789999999998


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhh----hcC-CCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIF----MIP-TKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                      +..++.++||||+||++|+|++|..||..........    .+. ............+++++.+||.+||+.||++|||+
T Consensus       203 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~  282 (336)
T 3fhr_A          203 PEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTI  282 (336)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             CCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChhHCcCH
Confidence            8889999999999999999999999996544332211    111 11111222345689999999999999999999999


Q ss_pred             HHHhcChhhhhccCCC
Q psy3253         230 SEMLNHEFIQRHDTDP  245 (251)
Q Consensus       230 ~evl~hp~~~~~~~~~  245 (251)
                      +|+++||||++....+
T Consensus       283 ~ell~hp~~~~~~~~~  298 (336)
T 3fhr_A          283 TQFMNHPWINQSMVVP  298 (336)
T ss_dssp             HHHHHSHHHHTGGGSC
T ss_pred             HHHhcCccccccccCC
Confidence            9999999998765444

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2.3e-40  Score=277.58  Aligned_cols=206  Identities=24%  Similarity=0.365  Sum_probs=166.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...|+||||+++++|.+++. ....+++..++.++.|++.||.|||++|++|||||     
T Consensus        65 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlk-----  138 (294)
T 4eqm_A           65 SSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIE-SHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIK-----  138 (294)
T ss_dssp             HTTCCBTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----
T ss_pred             HhcCCCCCCceEEEeeeeCCeEEEEEeCCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC-----
Confidence            467899999999999999999999999999999999997 44689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-ccccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-AKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++|+|||++....... .......||+.|+|||.+.+..++
T Consensus       139 ----------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  190 (294)
T 4eqm_A          139 ----------------------------PQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATD  190 (294)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCC
T ss_pred             ----------------------------HHHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCC
Confidence                                        889999999999999999997654332 122334689999999999998999


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCC--CCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPS--FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      .++||||+|+++|+|++|..||.+...............+.  ......+++.+.+++.+||..||++||+..+.+.+.|
T Consensus       191 ~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l  270 (294)
T 4eqm_A          191 ECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDL  270 (294)
T ss_dssp             TTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHH
T ss_pred             chHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHH
Confidence            99999999999999999999998776554433322221111  1224568999999999999999999996666666666


Q ss_pred             hhh
Q psy3253         238 IQR  240 (251)
Q Consensus       238 ~~~  240 (251)
                      .+-
T Consensus       271 ~~~  273 (294)
T 4eqm_A          271 SSV  273 (294)
T ss_dssp             HTS
T ss_pred             HHH
Confidence            553

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=1.1e-40  Score=287.48  Aligned_cols=206  Identities=25%  Similarity=0.425  Sum_probs=166.5

Q ss_pred             CCCCCCccceeeeeEeeC-----CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKN-----TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~-----~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      ++++||||+++++++...     ...|+||||++ |+|.+++.  ...+++..+..++.||+.||.|||++|++||||| 
T Consensus        80 ~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~-~~L~~~l~--~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik-  155 (364)
T 3qyz_A           80 LRFRHENIIGINDIIRAPTIEQMKDVYIVQDLME-TDLYKLLK--TQHLSNDHICYFLYQILRGLKYIHSANVLHRDLK-  155 (364)
T ss_dssp             HHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCS-EEHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-
T ss_pred             HhcCCCCCccceeEEecCCccccceEEEEEcccC-cCHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-
Confidence            468999999999999754     36899999996 59999986  3579999999999999999999999999999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc---cccccccccccccccc
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVI  153 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~~y~aPE~~  153 (251)
                                                      |+||+++.++.++|+|||++.........   .....+|+.|+|||++
T Consensus       156 --------------------------------p~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~  203 (364)
T 3qyz_A          156 --------------------------------PSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIM  203 (364)
T ss_dssp             --------------------------------GGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHH
T ss_pred             --------------------------------hHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHh
Confidence                                            88999999999999999999765433221   2334689999999987


Q ss_pred             cc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CC----------------------CCC---CCCC
Q psy3253         154 QE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KP----------------------PPS---FREP  204 (251)
Q Consensus       154 ~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~----------------------~~~---~~~~  204 (251)
                      .+ ..++.++||||+||++|+|++|.+||.+.+.......+..   ..                      ...   ....
T Consensus       204 ~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (364)
T 3qyz_A          204 LNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLF  283 (364)
T ss_dssp             HTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHC
T ss_pred             cCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhC
Confidence            54 5589999999999999999999999977654443322210   00                      000   0012


Q ss_pred             CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         205 DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       205 ~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                      ..+++++.+||.+||+.||++|||++|+++||||++...
T Consensus       284 ~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~~  322 (364)
T 3qyz_A          284 PNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYD  322 (364)
T ss_dssp             TTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTTCC
T ss_pred             CCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhhccC
Confidence            456899999999999999999999999999999997633

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=1.2e-40  Score=292.52  Aligned_cols=210  Identities=27%  Similarity=0.383  Sum_probs=164.6

Q ss_pred             CCCCCCCccceeeeeEeeC------CeEEEEEEccCCCCHHHHHH---HhCCCCCHHHHHHHHHHHHHHHHHHHhCCccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCDTLKGLEYLHLRRKIH   71 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~------~~~~lv~e~~~~gsL~~~~~---~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH   71 (251)
                      |++++||||++++++|...      ..+++||||+.+ +|.+++.   .....+++..++.++.||+.||.|||++||+|
T Consensus       101 l~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH  179 (420)
T 1j1b_A          101 MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICH  179 (420)
T ss_dssp             HHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEEC
T ss_pred             HHHcCCCCccceeeEEeccCCCCcceeEEeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccc
Confidence            3578999999999988532      247899999975 7776664   23578999999999999999999999999999


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCC-CCeEecccccccccCcccccccccccccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAP  150 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  150 (251)
                      ||||                                 |+||+++.+ +.+||+|||+++..... .......+|+.|+||
T Consensus       180 rDlk---------------------------------p~NILl~~~~~~~kl~DFG~a~~~~~~-~~~~~~~~t~~y~aP  225 (420)
T 1j1b_A          180 RDIK---------------------------------PQNLLLDPDTAVLKLCDFGSAKQLVRG-EPNVSYICSRYYRAP  225 (420)
T ss_dssp             SCCS---------------------------------GGGEEEETTTTEEEECCCTTCEECCTT-CCCCSCCSCTTSCCH
T ss_pred             cCCC---------------------------------hhhEEEeCCCCeEEeccchhhhhcccC-CCceeeeeCCCcCCH
Confidence            9988                                 888888855 56899999999765432 222345679999999


Q ss_pred             cccccC-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---------------C-CCCCCC----------C
Q psy3253         151 EVIQEI-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---------------K-PPPSFR----------E  203 (251)
Q Consensus       151 E~~~~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---------------~-~~~~~~----------~  203 (251)
                      |++.+. .++.++||||+||++|+|++|++||.+.+.......+..               . ....+.          .
T Consensus       226 E~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  305 (420)
T 1j1b_A          226 ELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVF  305 (420)
T ss_dssp             HHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHS
T ss_pred             HHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhc
Confidence            999664 789999999999999999999999977654332221110               0 000000          1


Q ss_pred             CCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCC
Q psy3253         204 PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP  245 (251)
Q Consensus       204 ~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~  245 (251)
                      +...++++.+||.+||..||++|||++|+++||||+...+..
T Consensus       306 ~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~  347 (420)
T 1j1b_A          306 RPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPN  347 (420)
T ss_dssp             CTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGCTT
T ss_pred             CCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhccccccc
Confidence            234689999999999999999999999999999998876554

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=100.00  E-value=1.9e-40  Score=282.95  Aligned_cols=210  Identities=24%  Similarity=0.397  Sum_probs=172.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-----------------------CCCCHHHHHHHHHHH
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-----------------------KTLSEDEIATILCDT   57 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-----------------------~~l~~~~~~~~~~~i   57 (251)
                      |++++||||+++++++.++...++||||+++|+|.+++....                       ..+++.+++.++.||
T Consensus       104 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi  183 (343)
T 1luf_A          104 MAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQV  183 (343)
T ss_dssp             HHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHH
T ss_pred             HHhCCCCCEEEEEEEEccCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHH
Confidence            357899999999999999999999999999999999997532                       578999999999999


Q ss_pred             HHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--
Q psy3253          58 LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--  135 (251)
Q Consensus        58 ~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--  135 (251)
                      +.||.|||++|++|||||                                 |+||+++.++.+||+|||++.......  
T Consensus       184 ~~~l~~LH~~~ivH~Dlk---------------------------------p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~  230 (343)
T 1luf_A          184 AAGMAYLSERKFVHRDLA---------------------------------TRNCLVGENMVVKIADFGLSRNIYSADYY  230 (343)
T ss_dssp             HHHHHHHHHTTCCCSCCS---------------------------------GGGEEECGGGCEEECCCSCHHHHTGGGCB
T ss_pred             HHHHHHHHhCCeecCCCC---------------------------------cceEEECCCCeEEEeecCCCcccccCccc
Confidence            999999999999999988                                 889999999999999999997554321  


Q ss_pred             ccccccccccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHH
Q psy3253         136 AKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDF  214 (251)
Q Consensus       136 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  214 (251)
                      .......+++.|+|||.+.+..++.++|||||||++|+|++ |..||.+.........+......  ..+..+++++.++
T Consensus       231 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l  308 (343)
T 1luf_A          231 KADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNIL--ACPENCPLELYNL  308 (343)
T ss_dssp             C----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCC--CCCTTCCHHHHHH
T ss_pred             cccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCChHHHHHHHhCCCcC--CCCCCCCHHHHHH
Confidence            12233456888999999988889999999999999999999 99999877766655554444322  2356789999999


Q ss_pred             HHHhhhcCcCccCCHHHHhcChhhhhccCCCCC
Q psy3253         215 VSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ  247 (251)
Q Consensus       215 i~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~~  247 (251)
                      +.+||+.||++|||++|++  ..+++......+
T Consensus       309 i~~~l~~~p~~Rps~~~~~--~~L~~~~~~~~~  339 (343)
T 1luf_A          309 MRLCWSKLPADRPSFCSIH--RILQRMCERAEG  339 (343)
T ss_dssp             HHHHTCSSGGGSCCHHHHH--HHHHHTTC----
T ss_pred             HHHHcccCcccCCCHHHHH--HHHHHHHhhhhh
Confidence            9999999999999999998  456655444433

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=100.00  E-value=1.3e-40  Score=276.87  Aligned_cols=198  Identities=27%  Similarity=0.489  Sum_probs=158.4

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++. ++..++||||+.+++|.+++......+++..+..++.|++.||.|||++|++|||||      
T Consensus        71 ~~l~h~~iv~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk------  143 (281)
T 1mp8_A           71 RQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIA------  143 (281)
T ss_dssp             HTCCCTTBCCEEEEEC-SSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS------
T ss_pred             HhCCCCccceEEEEEc-cCccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccc------
Confidence            5789999999999984 567899999999999999998666789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                 |+||+++.++.++|+|||++........ ......+++.|+|||++.+..++.
T Consensus       144 ---------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  196 (281)
T 1mp8_A          144 ---------------------------ARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTS  196 (281)
T ss_dssp             ---------------------------GGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSH
T ss_pred             ---------------------------HHHEEECCCCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCC
Confidence                                       8899998889999999999976543221 122334567899999999889999


Q ss_pred             chhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         161 VADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++||||+||++|++++ |..||.+.........+......  ..+..+++++.+++.+||+.||++|||++|++++
T Consensus       197 ~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  270 (281)
T 1mp8_A          197 ASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERL--PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  270 (281)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            9999999999999996 99999877666555544443322  2356789999999999999999999999999864

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=100.00  E-value=1.7e-40  Score=276.20  Aligned_cols=199  Identities=23%  Similarity=0.416  Sum_probs=171.5

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+++++|.+++......+++..+..++.|++.||.|||++|++|||||      
T Consensus        74 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dik------  147 (283)
T 3gen_A           74 MNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLA------  147 (283)
T ss_dssp             HTCCCTTBCCEEEEECSSSSEEEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCS------
T ss_pred             hcCCCCCEeeEEEEEecCCCeEEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCc------
Confidence            57899999999999999999999999999999999998656789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                 |+||+++.++.++|+|||.+........ ......+++.|+|||.+.+..++.
T Consensus       148 ---------------------------p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  200 (283)
T 3gen_A          148 ---------------------------ARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSS  200 (283)
T ss_dssp             ---------------------------GGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCCSH
T ss_pred             ---------------------------cceEEEcCCCCEEEccccccccccccccccccCCccCcccCCHHHhccCCCCc
Confidence                                       8899999999999999999976543221 222334567899999999889999


Q ss_pred             chhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         161 VADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++||||+|+++|++++ |..||...+.......+.....  ...+...++.+.+++.+||+.||++|||++|+++|
T Consensus       201 ~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  274 (283)
T 3gen_A          201 KSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLR--LYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN  274 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCC--CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccC--CCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence            9999999999999998 9999988776666555544432  22356679999999999999999999999999976

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=4.4e-41  Score=285.09  Aligned_cols=205  Identities=29%  Similarity=0.458  Sum_probs=164.2

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++..+. .|+||||+.+++|.+++. ....+++..+..++.||+.||.|||++|++|||||      
T Consensus        70 ~~l~h~~i~~~~~~~~~~~-~~lv~e~~~~~~L~~~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlk------  141 (322)
T 2ycf_A           70 KKLNHPCIIKIKNFFDAED-YYIVLELMEGGELFDKVV-GNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLK------  141 (322)
T ss_dssp             HHCCCTTBCCEEEEEESSS-EEEEEECCTTEETHHHHS-TTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS------
T ss_pred             HhCCCCCCceEeeEEcCCc-eEEEEecCCCCcHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC------
Confidence            4679999999999997654 899999999999999886 45789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCC---CeEecccccccccCcccccccccccccccccccccc---c
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG---HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ---E  155 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~---~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~---~  155 (251)
                                                 |+||+++.++   .++|+|||++....... ......+++.|+|||++.   .
T Consensus       142 ---------------------------p~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~  193 (322)
T 2ycf_A          142 ---------------------------PENVLLSSQEEDCLIKITDFGHSKILGETS-LMRTLCGTPTYLAPEVLVSVGT  193 (322)
T ss_dssp             ---------------------------GGGEEESSSSSSCCEEECCCTTCEECCCCH-HHHHHHSCCTTCCHHHHHHTTT
T ss_pred             ---------------------------HHHEEEecCCCCCeEEEccCccceeccccc-ccccccCCcCccCchhhccCCC
Confidence                                       7788887655   49999999997654321 223345789999999974   4


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh-hhhcCCCCCC-CCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA-IFMIPTKPPP-SFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      ..++.++|||||||++|+|++|..||........ ...+...... ....+..+++++.+++.+||+.||++|||++|++
T Consensus       194 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l  273 (322)
T 2ycf_A          194 AGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEAL  273 (322)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHh
Confidence            6688999999999999999999999965433221 1111111111 1111345789999999999999999999999999


Q ss_pred             cChhhhhcc
Q psy3253         234 NHEFIQRHD  242 (251)
Q Consensus       234 ~hp~~~~~~  242 (251)
                      +||||+..+
T Consensus       274 ~h~~~~~~~  282 (322)
T 2ycf_A          274 RHPWLQDED  282 (322)
T ss_dssp             TSGGGCCHH
T ss_pred             hCcCcCCHH
Confidence            999997644

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=3.9e-41  Score=290.86  Aligned_cols=204  Identities=23%  Similarity=0.472  Sum_probs=154.2

Q ss_pred             CCCCCCccceeeeeEeeC------CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~------~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      ++++||||+++++++...      ...|+++|++ +++|.+++.  ...+++..++.++.||+.||.|||++|++|||||
T Consensus        83 ~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~--~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlk  159 (367)
T 2fst_X           83 KHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVK--CQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLK  159 (367)
T ss_dssp             HHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CEECC-------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             HhCCCCCCCcEEEEEecCCccccCCeEEEEeccc-CCCHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCC
Confidence            468999999999999653      5689999999 679999986  3679999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.+||+|||+++.....   .....+|+.|+|||++.+
T Consensus       160 ---------------------------------p~NIll~~~~~~kL~DFG~a~~~~~~---~~~~~~t~~y~aPE~~~~  203 (367)
T 2fst_X          160 ---------------------------------PSNLAVNEDCELKILDFGLARHTADE---MTGYVATRWYRAPEIMLN  203 (367)
T ss_dssp             ---------------------------------GGGEEECTTCCEEECC------------------CCCTTCCHHHHTT
T ss_pred             ---------------------------------HhhEEECCCCCEEEeecccccccccc---CCCcCcCcCccChHHHcC
Confidence                                             88999999999999999999765432   233567999999999976


Q ss_pred             -CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---C------------------------CCCCC-CCCCC
Q psy3253         156 -IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---K------------------------PPPSF-REPDV  206 (251)
Q Consensus       156 -~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~------------------------~~~~~-~~~~~  206 (251)
                       ..++.++||||+||++|+|++|.+||.+.+.......+..   .                        ....+ .....
T Consensus       204 ~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (367)
T 2fst_X          204 WMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIG  283 (367)
T ss_dssp             CCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTT
T ss_pred             CcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCC
Confidence             6789999999999999999999999977654433222110   0                        00000 01234


Q ss_pred             CCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         207 WTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       207 ~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      .++++.+||.+||+.||++|||++|+|+||||+.....
T Consensus       284 ~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~~~~~~~  321 (367)
T 2fst_X          284 ANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDP  321 (367)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCG
T ss_pred             CCHHHHHHHHHhCCCCcccCcCHHHHhcChhhhhccCC
Confidence            68899999999999999999999999999999876543

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=100.00  E-value=4.4e-40  Score=279.41  Aligned_cols=209  Identities=37%  Similarity=0.695  Sum_probs=152.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH----hCCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL----RKKTLSEDEIATILCDTLKGLEYLHLR-RKIHRDIKA   76 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~----~~~~l~~~~~~~~~~~i~~~l~~LH~~-~iiH~dik~   76 (251)
                      +.++||||+++++++.+.+..++||||+.+ +|.+++..    ....+++..+..++.|++.||.|||++ |++||||| 
T Consensus        76 ~~~~h~niv~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlk-  153 (327)
T 3aln_A           76 RSSDCPYIVQFYGALFREGDCWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIK-  153 (327)
T ss_dssp             SSCCCTTBCCEEEEEECSSEEEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCC-
T ss_pred             HcCCCCcEeeeeeEEEeCCceEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCC-
Confidence            567999999999999999999999999975 88888752    257899999999999999999999998 99999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccc---
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI---  153 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~---  153 (251)
                                                      |+||+++.++.+||+|||++....... ......+++.|+|||++   
T Consensus       154 --------------------------------p~NIll~~~~~~kl~Dfg~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~  200 (327)
T 3aln_A          154 --------------------------------PSNILLDRSGNIKLCDFGISGQLVDSI-AKTRDAGCRPYMAPERIDPS  200 (327)
T ss_dssp             --------------------------------GGGEEEETTTEEEECCCSSSCC--------------------------
T ss_pred             --------------------------------HHHEEEcCCCCEEEccCCCceeccccc-ccccCCCCccccCceeeccc
Confidence                                            889999999999999999997654332 22334688899999998   


Q ss_pred             -ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhcCCCCCCCC--CCCCCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         154 -QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFMIPTKPPPSF--REPDVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       154 -~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                       .+..++.++|||||||++|+|++|..||...... .....+.....+.+  .....+++++.+++.+||+.||++|||+
T Consensus       201 ~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  280 (327)
T 3aln_A          201 ASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKY  280 (327)
T ss_dssp             -----CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             cCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCH
Confidence             4567899999999999999999999999764332 22222222222222  1234689999999999999999999999


Q ss_pred             HHHhcChhhhhccCCC
Q psy3253         230 SEMLNHEFIQRHDTDP  245 (251)
Q Consensus       230 ~evl~hp~~~~~~~~~  245 (251)
                      +|+++||||....+..
T Consensus       281 ~ell~hp~~~~~~~~~  296 (327)
T 3aln_A          281 KELLKHPFILMYEERA  296 (327)
T ss_dssp             HHHTTSHHHHHHHHSC
T ss_pred             HHHHhChHHHHhHhhH
Confidence            9999999998876554

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=9.1e-41  Score=281.88  Aligned_cols=211  Identities=24%  Similarity=0.431  Sum_probs=165.2

Q ss_pred             CCCCCCCccceeeeeEe--------------eCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy3253           1 MQQCDSPYVVKYYGSYF--------------KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL   66 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~--------------~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~   66 (251)
                      |++++||||+++++++.              +....++||||++ |+|.+++.  ...+++..++.++.|++.||.|||+
T Consensus        62 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~  138 (320)
T 2i6l_A           62 IRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYME-TDLANVLE--QGPLLEEHARLFMYQLLRGLKYIHS  138 (320)
T ss_dssp             HHTCCCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCS-EEHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCeeEEEEeccccccccccccccccccCceeEEeeccC-CCHHHHhh--cCCccHHHHHHHHHHHHHHHHHHHh
Confidence            35789999999999873              3467899999997 59999985  4679999999999999999999999


Q ss_pred             CCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecC-CCCCeEecccccccccCccc---ccccccc
Q psy3253          67 RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN-TEGHAKLADFGVAGQLTDTM---AKRNTVI  142 (251)
Q Consensus        67 ~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~-~~~~~kl~dfg~~~~~~~~~---~~~~~~~  142 (251)
                      +|++|||||                                 |+||+++ .++.+||+|||++.......   .......
T Consensus       139 ~~i~H~dlk---------------------------------p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~  185 (320)
T 2i6l_A          139 ANVLHRDLK---------------------------------PANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGL  185 (320)
T ss_dssp             TTCBCCCCS---------------------------------GGGEEEETTTTEEEECCCTTCBCC--------CCCGGG
T ss_pred             CCEecCCCC---------------------------------HHHEEEcCCCCeEEEccCccccccCCCccccccccccc
Confidence            999999988                                 8888886 45689999999997654221   1223345


Q ss_pred             ccccccccccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC-----------------------
Q psy3253         143 GTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP-----------------------  198 (251)
Q Consensus       143 ~~~~y~aPE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-----------------------  198 (251)
                      ++..|+|||.+.+ ..++.++|||||||++|+|++|..||.+.........+....+                       
T Consensus       186 ~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (320)
T 2i6l_A          186 VTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMT  265 (320)
T ss_dssp             SCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTT
T ss_pred             ccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCccccccccc
Confidence            6888999998865 6789999999999999999999999977655433322111100                       


Q ss_pred             ----CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCCC
Q psy3253         199 ----PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ  247 (251)
Q Consensus       199 ----~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~~  247 (251)
                          +.......++.++.++|.+||+.||++|||++|+++||||+..+++..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~p~~~  318 (320)
T 2i6l_A          266 EPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYMSIYSFPMDE  318 (320)
T ss_dssp             SCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHHHHTTCC----
T ss_pred             CCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCCcccccccCccCC
Confidence                0001124579999999999999999999999999999999999887754

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=3.1e-40  Score=283.60  Aligned_cols=210  Identities=27%  Similarity=0.374  Sum_probs=165.0

Q ss_pred             CCCCCccceeeeeEeeCCe-------EEEEEEccCCCCHHHHHH---HhCCCCCHHHHHHHHHHHHHHHHHHH--hCCcc
Q psy3253           3 QCDSPYVVKYYGSYFKNTD-------LWIVMEYCGAGSVSDIMR---LRKKTLSEDEIATILCDTLKGLEYLH--LRRKI   70 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~-------~~lv~e~~~~gsL~~~~~---~~~~~l~~~~~~~~~~~i~~~l~~LH--~~~ii   70 (251)
                      +++||||++++++|.....       .++||||+.+ +|.+.+.   .....+++..+..++.|++.||.|||  ++|++
T Consensus        75 ~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~iv  153 (360)
T 3e3p_A           75 VLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVC  153 (360)
T ss_dssp             HHCCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCB
T ss_pred             hcCCCCcccHHHhhhccccccccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCee
Confidence            4689999999999975433       8999999976 6655543   24567899999999999999999999  99999


Q ss_pred             ccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCC-CCCeEecccccccccCccccccccccccccccc
Q psy3253          71 HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMA  149 (251)
Q Consensus        71 H~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~-~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~a  149 (251)
                      |||||                                 |+||+++. ++.+||+|||++....... ......+|+.|+|
T Consensus       154 H~Dlk---------------------------------p~NIll~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~a  199 (360)
T 3e3p_A          154 HRDIK---------------------------------PHNVLVNEADGTLKLCDFGSAKKLSPSE-PNVAYICSRYYRA  199 (360)
T ss_dssp             CSCCC---------------------------------GGGEEEETTTTEEEECCCTTCBCCCTTS-CCCSTTSCGGGCC
T ss_pred             cCcCC---------------------------------HHHEEEeCCCCcEEEeeCCCceecCCCC-CcccccCCcceeC
Confidence            99988                                 88888886 7899999999997655432 2334567899999


Q ss_pred             ccccccC-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC---C---------------------CC-----
Q psy3253         150 PEVIQEI-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK---P---------------------PP-----  199 (251)
Q Consensus       150 PE~~~~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~---~---------------------~~-----  199 (251)
                      ||++.+. .++.++|||||||++|+|++|..||.+.+.......+...   .                     ..     
T Consensus       200 PE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (360)
T 3e3p_A          200 PELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNV  279 (360)
T ss_dssp             HHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHH
T ss_pred             HHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccc
Confidence            9998654 4899999999999999999999999776554333222110   0                     00     


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCCC
Q psy3253         200 SFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ  247 (251)
Q Consensus       200 ~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~~  247 (251)
                      ........++++.+||.+||+.||++|||++|+++||||+...+....
T Consensus       280 ~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~~  327 (360)
T 3e3p_A          280 FSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHDPATK  327 (360)
T ss_dssp             TTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGCTTCC
T ss_pred             cchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCCcccc
Confidence            001122356889999999999999999999999999999988766543

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=2.2e-40  Score=283.83  Aligned_cols=210  Identities=25%  Similarity=0.450  Sum_probs=167.0

Q ss_pred             CCCCCCccceeeeeEeeC-----CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKN-----TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~-----~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      ++++||||+++++++...     ...++||||+. ++|.+++..  ..+++..+..++.|++.||.|||++|++||||| 
T Consensus        64 ~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~--~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlk-  139 (353)
T 2b9h_A           64 KHFKHENIITIFNIQRPDSFENFNEVYIIQELMQ-TDLHRVIST--QMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLK-  139 (353)
T ss_dssp             HHCCCTTBCCEEEECCCSCSTTCCCEEEEECCCS-EEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-
T ss_pred             HhCcCCCcCCeeeeecccccCccceEEEEEeccC-ccHHHHHhh--cCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC-
Confidence            467999999999988654     67999999996 599999863  579999999999999999999999999999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc----------ccccccccc
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK----------RNTVIGTPF  146 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~----------~~~~~~~~~  146 (251)
                                                      |+||+++.++.++|+|||++.........          .....||+.
T Consensus       140 --------------------------------p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~  187 (353)
T 2b9h_A          140 --------------------------------PSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRW  187 (353)
T ss_dssp             --------------------------------GGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGG
T ss_pred             --------------------------------HHHeEEcCCCcEEEEecccccccccccccccCccccccchhhcccccc
Confidence                                            88999999999999999999765432111          122357889


Q ss_pred             ccccccccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CCCC--------------------CCC-
Q psy3253         147 WMAPEVIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TKPP--------------------PSF-  201 (251)
Q Consensus       147 y~aPE~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~~~--------------------~~~-  201 (251)
                      |+|||++.+ ..++.++||||+||++|+|++|.+||.+.+.......+.   ....                    +.. 
T Consensus       188 y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
T 2b9h_A          188 YRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYP  267 (353)
T ss_dssp             GCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCC
T ss_pred             ccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhcccCCC
Confidence            999998754 678999999999999999999999997765432221110   0000                    000 


Q ss_pred             -----CCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCCC
Q psy3253         202 -----REPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ  247 (251)
Q Consensus       202 -----~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~~  247 (251)
                           .....+++++.++|.+||+.||++|||++|+++||||+...+....
T Consensus       268 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~~~~~  318 (353)
T 2b9h_A          268 AAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHPYLQTYHDPNDE  318 (353)
T ss_dssp             CCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCTTSS
T ss_pred             CcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCccccccCCcccc
Confidence                 0124678999999999999999999999999999999987766543

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=100.00  E-value=3.6e-40  Score=277.85  Aligned_cols=200  Identities=26%  Similarity=0.512  Sum_probs=169.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-----------------------CCCCHHHHHHHHHHH
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-----------------------KTLSEDEIATILCDT   57 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-----------------------~~l~~~~~~~~~~~i   57 (251)
                      |++++||||+++++++.+....++||||+.+++|.+++....                       ..+++.+++.++.||
T Consensus        80 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi  159 (314)
T 2ivs_A           80 LKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQI  159 (314)
T ss_dssp             HTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHH
T ss_pred             HhhCCCCceeeEEEEEecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHH
Confidence            467899999999999999999999999999999999997532                       238999999999999


Q ss_pred             HHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-
Q psy3253          58 LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-  136 (251)
Q Consensus        58 ~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-  136 (251)
                      +.||.|||++|++|||||                                 |+||+++.++.++|+|||++........ 
T Consensus       160 ~~~l~~lH~~~ivH~dik---------------------------------p~NIli~~~~~~kl~Dfg~~~~~~~~~~~  206 (314)
T 2ivs_A          160 SQGMQYLAEMKLVHRDLA---------------------------------ARNILVAEGRKMKISDFGLSRDVYEEDSY  206 (314)
T ss_dssp             HHHHHHHHHTTEECCCCS---------------------------------GGGEEEETTTEEEECCCTTCEECTTTSCE
T ss_pred             HHHHHHHHHCCCcccccc---------------------------------hheEEEcCCCCEEEccccccccccccccc
Confidence            999999999999999988                                 8899999999999999999976543211 


Q ss_pred             -cccccccccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHH
Q psy3253         137 -KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDF  214 (251)
Q Consensus       137 -~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  214 (251)
                       ......+++.|+|||.+.+..++.++||||+||++|+|++ |..||.+.........+.....  ...+..+++++.++
T Consensus       207 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l  284 (314)
T 2ivs_A          207 VKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHR--MERPDNCSEEMYRL  284 (314)
T ss_dssp             ECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCC--CCCCTTCCHHHHHH
T ss_pred             eeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHhhcCCc--CCCCccCCHHHHHH
Confidence             2233346778999999988889999999999999999999 9999987766665554444332  23356789999999


Q ss_pred             HHHhhhcCcCccCCHHHHhcC
Q psy3253         215 VSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       215 i~~~l~~~p~~Rps~~evl~h  235 (251)
                      +.+||+.||++|||++|++++
T Consensus       285 i~~~l~~dp~~Rps~~~l~~~  305 (314)
T 2ivs_A          285 MLQCWKQEPDKRPVFADISKD  305 (314)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHccCChhhCcCHHHHHHH
Confidence            999999999999999999865

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=1.2e-40  Score=282.88  Aligned_cols=198  Identities=25%  Similarity=0.395  Sum_probs=165.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++. +...++||||+.+|+|.+++......+++..+..++.|++.||.|||++|++|||||      
T Consensus        70 ~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dik------  142 (325)
T 3kex_A           70 GSLDHAHIVRLLGLCP-GSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLA------  142 (325)
T ss_dssp             HTCCCTTBCCEEEEEC-BSSEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCS------
T ss_pred             hcCCCCCcCeEEEEEc-CCccEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccc------
Confidence            4689999999999986 456899999999999999998555789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                 |+||+++.++.+||+|||+++.......  ......++..|+|||.+.+..++
T Consensus       143 ---------------------------p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  195 (325)
T 3kex_A          143 ---------------------------ARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYT  195 (325)
T ss_dssp             ---------------------------STTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCC
T ss_pred             ---------------------------hheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCC
Confidence                                       8889998899999999999986543321  22334567789999999988999


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++||||+||++|++++ |..||.+.........+.....  ...+..+++++.+++.+||..||++|||++|++++
T Consensus       196 ~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~  270 (325)
T 3kex_A          196 HQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGER--LAQPQICTIDVYMVMVKCWMIDENIRPTFKELANE  270 (325)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCB--CCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHH
T ss_pred             hhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCC--CCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            99999999999999999 9999987766555544444322  22355678899999999999999999999999876

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.5e-40  Score=286.19  Aligned_cols=198  Identities=24%  Similarity=0.469  Sum_probs=170.1

Q ss_pred             CC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHHh
Q psy3253           3 QC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLHL   66 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH~   66 (251)
                      ++ +||||+++++++.++...++||||+++|+|.+++....               ..+++..++.++.||+.||.|||+
T Consensus       130 ~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~  209 (382)
T 3tt0_A          130 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLAS  209 (382)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCchhhhheeeeccCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHh
Confidence            45 89999999999999999999999999999999997543               359999999999999999999999


Q ss_pred             CCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--ccccccccc
Q psy3253          67 RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGT  144 (251)
Q Consensus        67 ~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~  144 (251)
                      +|++|||||                                 |+||+++.++.+||+|||++.......  .......+|
T Consensus       210 ~~ivH~Dlk---------------------------------p~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t  256 (382)
T 3tt0_A          210 KKCIHRDLA---------------------------------ARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP  256 (382)
T ss_dssp             TTCCCSCCC---------------------------------GGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCG
T ss_pred             CCEecCCCC---------------------------------cceEEEcCCCcEEEcccCcccccccccccccccCCCCC
Confidence            999999988                                 889999999999999999997654322  122334467


Q ss_pred             cccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCc
Q psy3253         145 PFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP  223 (251)
Q Consensus       145 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  223 (251)
                      +.|+|||++.+..++.++|||||||++|+|++ |..||.+.........+......  ..+..+++++.+++.+||+.||
T Consensus       257 ~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dP  334 (382)
T 3tt0_A          257 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRM--DKPSNCTNELYMMMRDCWHAVP  334 (382)
T ss_dssp             GGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCC--CCCSSCCHHHHHHHHHHTCSSG
T ss_pred             cceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--CCCccCCHHHHHHHHHHcCCCh
Confidence            78999999999999999999999999999999 99999887766665555444322  2356789999999999999999


Q ss_pred             CccCCHHHHhcC
Q psy3253         224 EERATASEMLNH  235 (251)
Q Consensus       224 ~~Rps~~evl~h  235 (251)
                      ++|||++|++++
T Consensus       335 ~~Rps~~ell~~  346 (382)
T 3tt0_A          335 SQRPTFKQLVED  346 (382)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hhCcCHHHHHHH
Confidence            999999999976

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=2.8e-40  Score=286.02  Aligned_cols=199  Identities=25%  Similarity=0.416  Sum_probs=159.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....++||||+++|+|.++++.....+++.++..++.||+.||.|||++|++|||||     
T Consensus       100 l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk-----  174 (373)
T 2qol_A          100 MGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLA-----  174 (373)
T ss_dssp             HTTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HHhCCCCCCCeEEEEEeeCCceEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCC-----
Confidence            468899999999999999999999999999999999998666689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc---ccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.+||+|||+++........   .....++..|+|||++.+..
T Consensus       175 ----------------------------p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  226 (373)
T 2qol_A          175 ----------------------------ARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK  226 (373)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCC----------------------CTTSCHHHHHHCC
T ss_pred             ----------------------------cceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCC
Confidence                                        88999999999999999999765432211   11223466799999999889


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++.++|||||||++|++++ |..||.+.........+....  ....+..++.++.+++.+||+.||++|||++|+++
T Consensus       227 ~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~~~--~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~  302 (373)
T 2qol_A          227 FTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGY--RLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVS  302 (373)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHTTE--ECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC--CCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHH
Confidence            9999999999999999997 999998776665554443332  12235568999999999999999999999999975

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=2e-40  Score=286.61  Aligned_cols=203  Identities=26%  Similarity=0.455  Sum_probs=162.2

Q ss_pred             CCCCCCccceeeeeEeeCCeE------EEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDL------WIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~------~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      ++++||||+++++++......      |+||||+. ++|.+++.   ..+++..+..++.|++.||.|||++|++|||||
T Consensus        96 ~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~---~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik  171 (371)
T 4exu_A           96 KHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMG---MEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLK  171 (371)
T ss_dssp             HHCCCTTBCCCSEEECSCSSSTTCCCCEEEEECCC-EEHHHHTT---SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             HhcCCCCchhhhhheeccCCcccceeEEEEEcccc-ccHHHHhh---cCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcC
Confidence            468999999999999876654      99999996 58888763   569999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.++|+|||+++.....   .....+|+.|+|||++.+
T Consensus       172 ---------------------------------p~NIll~~~~~~kL~Dfg~a~~~~~~---~~~~~~t~~y~aPE~~~~  215 (371)
T 4exu_A          172 ---------------------------------PGNLAVNEDCELKILDFGLARHADAE---MTGYVVTRWYRAPEVILS  215 (371)
T ss_dssp             ---------------------------------GGGEEECTTCCEEECSTTCC-----------CTTCCCTTSCHHHHSC
T ss_pred             ---------------------------------HHHeEECCCCCEEEEecCcccccccC---cCCcccCccccCHHHhcC
Confidence                                             88999999999999999999755432   234567899999999977


Q ss_pred             -CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---------------------------CCCCC-CCCCCC
Q psy3253         156 -IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---------------------------KPPPS-FREPDV  206 (251)
Q Consensus       156 -~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---------------------------~~~~~-~~~~~~  206 (251)
                       ..++.++||||+||++|+|++|..||.+.+.......+..                           ..... ...+..
T Consensus       216 ~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (371)
T 4exu_A          216 WMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPR  295 (371)
T ss_dssp             CSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTT
T ss_pred             CCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccc
Confidence             7789999999999999999999999977654333222110                           00000 001245


Q ss_pred             CCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         207 WTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       207 ~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      +++++.+||.+||+.||++|||++|+++||||+....+
T Consensus       296 ~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  333 (371)
T 4exu_A          296 ASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRDP  333 (371)
T ss_dssp             SCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCCG
T ss_pred             cChHHHHHHHHHCCCChhhcCCHHHHhcCcccccCCCc
Confidence            68999999999999999999999999999999876543

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=3.6e-40  Score=280.03  Aligned_cols=204  Identities=24%  Similarity=0.387  Sum_probs=161.8

Q ss_pred             CCC-CCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           3 QCD-SPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         3 ~l~-hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      +++ ||||+++++++.+  ....++||||+.+++|.++++    .+++..++.++.||+.||.|||++|++|||||    
T Consensus        86 ~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dik----  157 (330)
T 3nsz_A           86 NLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ----TLTDYDIRFYMYEILKALDYCHSMGIMHRDVK----  157 (330)
T ss_dssp             HHTTSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHHGG----GCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS----
T ss_pred             HcCCCCCEEEeeeeeccCCCCceEEEEeccCchhHHHHHH----hCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC----
Confidence            454 9999999999987  667999999999999998874    48999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCC-CeEecccccccccCccccccccccccccccccccccc-CC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IG  157 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~  157 (251)
                                                   |+||+++.++ .++|+|||++...... .......+++.|+|||.+.+ ..
T Consensus       158 -----------------------------p~Nil~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~  207 (330)
T 3nsz_A          158 -----------------------------PHNVMIDHEHRKLRLIDWGLAEFYHPG-QEYNVRVASRYFKGPELLVDYQM  207 (330)
T ss_dssp             -----------------------------GGGEEEETTTTEEEECCCTTCEECCTT-CCCCSCCSCGGGCCHHHHTTCCC
T ss_pred             -----------------------------HHHEEEcCCCCEEEEEeCCCceEcCCC-CccccccccccccChhhhcCCCc
Confidence                                         8888888666 7999999999765433 22334567889999999976 67


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhc----------------C------------CCCC------CCCC
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFMI----------------P------------TKPP------PSFR  202 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~----------------~------------~~~~------~~~~  202 (251)
                      ++.++||||+||++|+|++|..||...... .....+                .            ....      ....
T Consensus       208 ~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (330)
T 3nsz_A          208 YDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSE  287 (330)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTT
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhcccc
Confidence            899999999999999999999999432211 110000                0            0000      0011


Q ss_pred             CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         203 EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       203 ~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      .+..+++++.+||.+||+.||++|||++|+|+||||+...++
T Consensus       288 ~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  329 (330)
T 3nsz_A          288 NQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKD  329 (330)
T ss_dssp             TGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTSGGGTTCC--
T ss_pred             ccccCCHHHHHHHHHHhcCCcccCCCHHHHhcCccHhhhccC
Confidence            123378999999999999999999999999999999987654

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=100.00  E-value=3.7e-40  Score=275.89  Aligned_cols=206  Identities=26%  Similarity=0.465  Sum_probs=159.5

Q ss_pred             CCCCCCCccceeeeeEee-------------CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy3253           1 MQQCDSPYVVKYYGSYFK-------------NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR   67 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~-------------~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~   67 (251)
                      |++++||||+++++++.+             ....|+||||+++|+|.+++......+++..+..++.|++.||.|||++
T Consensus        56 l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~  135 (303)
T 1zy4_A           56 LASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQ  135 (303)
T ss_dssp             HTTCCCTTBCCEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCchHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhC
Confidence            467899999999998865             3568999999999999999986666789999999999999999999999


Q ss_pred             CccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc------------
Q psy3253          68 RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM------------  135 (251)
Q Consensus        68 ~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~------------  135 (251)
                      |++|||||                                 |+||+++.++.++|+|||.+.......            
T Consensus       136 ~i~H~dlk---------------------------------p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~  182 (303)
T 1zy4_A          136 GIIHRDLK---------------------------------PMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPG  182 (303)
T ss_dssp             TCCCSCCC---------------------------------GGGEEECTTSCEEECCCCCCSCTTC--------------
T ss_pred             CeecccCC---------------------------------HHhEEEcCCCCEEEeeCcchhhcccccchhccccccccc
Confidence            99999988                                 889999999999999999997654221            


Q ss_pred             --ccccccccccccccccccccC-CCCcchhHHHHHHHHHHHHhCCCCCCCC-CcchhhhhcCCC-CCCCCCCCCCCCHH
Q psy3253         136 --AKRNTVIGTPFWMAPEVIQEI-GYDCVADMWSLGITALEMAEGKPPYGDI-HPMRAIFMIPTK-PPPSFREPDVWTPE  210 (251)
Q Consensus       136 --~~~~~~~~~~~y~aPE~~~~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~  210 (251)
                        .......+++.|+|||++.+. .++.++||||+||++|+|++   ||... +.......+... .......+...++.
T Consensus       183 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (303)
T 1zy4_A          183 SSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMERVNILKKLRSVSIEFPPDFDDNKMKV  259 (303)
T ss_dssp             -----------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHHHHHHSTTCCCCTTCCTTTSHH
T ss_pred             cccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhHHHHHHhccccccccCccccccchHH
Confidence              122334578899999999764 68999999999999999998   45322 112222221111 11111234556788


Q ss_pred             HHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         211 FIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       211 ~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                      +.+++.+||+.||++|||++|+++||||+...
T Consensus       260 ~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  291 (303)
T 1zy4_A          260 EKKIIRLLIDHDPNKRPGARTLLNSGWLPVKH  291 (303)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHSSCSCCCC
T ss_pred             HHHHHHHHHhcCcccCcCHHHHhCCCCcCCCC
Confidence            99999999999999999999999999997644

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.3e-40  Score=283.85  Aligned_cols=200  Identities=23%  Similarity=0.441  Sum_probs=159.7

Q ss_pred             CCCCCCCccceeeeeEe-eCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYF-KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~-~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++. .+...++||||+++|+|.++++.....+++..+..++.||+.||.|||++|++|||||    
T Consensus       144 l~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlk----  219 (373)
T 3c1x_A          144 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLA----  219 (373)
T ss_dssp             STTCCCTTBCCCCEEECCCSSCCEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCC----
T ss_pred             HHhCCCCCcceEEEEEEcCCCCeEEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccc----
Confidence            57889999999999875 4567899999999999999998666779999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc----ccccccccccccccccccc
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA----KRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~  155 (251)
                                                   |+||+++.++.+||+|||+++.......    ......+++.|+|||.+.+
T Consensus       220 -----------------------------p~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  270 (373)
T 3c1x_A          220 -----------------------------ARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQT  270 (373)
T ss_dssp             -----------------------------GGGEEECTTCCEEECCC---------------------CCGGGSCHHHHHH
T ss_pred             -----------------------------hheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcC
Confidence                                         8899999999999999999975533211    1123346778999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         156 IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ..++.++|||||||++|+|++ |.+||.+.+.......+.....  ...+..+++.+.+++.+||+.||++|||++|+++
T Consensus       271 ~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~--~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~  348 (373)
T 3c1x_A          271 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRR--LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS  348 (373)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCC--CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCC--CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            999999999999999999999 7888876655554444333322  2335678999999999999999999999999986


Q ss_pred             C
Q psy3253         235 H  235 (251)
Q Consensus       235 h  235 (251)
                      +
T Consensus       349 ~  349 (373)
T 3c1x_A          349 R  349 (373)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=6.4e-40  Score=270.27  Aligned_cols=199  Identities=25%  Similarity=0.445  Sum_probs=169.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++...++||||+++++|.+++......+++..+..++.|++.||.|||++|++|||||      
T Consensus        58 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~------  131 (267)
T 3t9t_A           58 MKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLA------  131 (267)
T ss_dssp             HTCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCC------
T ss_pred             HhCCCCCEeeEEEEEccCCCeEEEEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCc------
Confidence            57899999999999999999999999999999999998666789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                 |+||+++.++.++|+|||++........ ......++..|+|||++.+..++.
T Consensus       132 ---------------------------p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  184 (267)
T 3t9t_A          132 ---------------------------ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSS  184 (267)
T ss_dssp             ---------------------------GGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCH
T ss_pred             ---------------------------hheEEECCCCCEEEcccccccccccccccccccccccccccChhhhcCCCccc
Confidence                                       8899998899999999999976543211 122334567899999998888999


Q ss_pred             chhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         161 VADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++|+||+|+++|+|++ |..||...........+.....  ...+..+++.+.+++.+||+.||++|||++|++++
T Consensus       185 ~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  258 (267)
T 3t9t_A          185 KSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFR--LYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQ  258 (267)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCC--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             hhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCCc--CCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            9999999999999999 8999987766555544444322  22355679999999999999999999999999864

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=2.5e-39  Score=274.92  Aligned_cols=222  Identities=21%  Similarity=0.287  Sum_probs=163.9

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV   82 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~   82 (251)
                      ..|++++++++++.+..+.++||||+ +++|.+++.... ..+++..++.++.||+.||.|||++|++||||||+|||+.
T Consensus        74 ~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~  152 (339)
T 1z57_A           74 NSTFRCVQMLEWFEHHGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFV  152 (339)
T ss_dssp             TCTTCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEES
T ss_pred             CCceeeEeeecccccCCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEe
Confidence            35667999999999999999999999 889999997443 3689999999999999999999999999999996666554


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcch
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA  162 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  162 (251)
                      ...........             . ...-....++.++|+|||++.....   ......+|+.|+|||++.+..++.++
T Consensus       153 ~~~~~~~~~~~-------------~-~~~~~~~~~~~~kl~Dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~  215 (339)
T 1z57_A          153 QSDYTEAYNPK-------------I-KRDERTLINPDIKVVDFGSATYDDE---HHSTLVSTRHYRAPEVILALGWSQPC  215 (339)
T ss_dssp             CCCEEEEEC------------------CEEEEESCCCEEECCCSSCEETTS---CCCSSCSCGGGCCHHHHTTSCCCTHH
T ss_pred             ccccccccCCc-------------c-ccccccccCCCceEeeCcccccCcc---ccccccCCccccChHHhhCCCCCcch
Confidence            22110000000             0 0000111266799999999975432   22345678999999999998999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---CCCCC--------------------------------------CCC
Q psy3253         163 DMWSLGITALEMAEGKPPYGDIHPMRAIFMI---PTKPP--------------------------------------PSF  201 (251)
Q Consensus       163 DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---~~~~~--------------------------------------~~~  201 (251)
                      |||||||++|++++|..||...+.......+   ....+                                      ...
T Consensus       216 Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (339)
T 1z57_A          216 DVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFM  295 (339)
T ss_dssp             HHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGC
T ss_pred             hhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhc
Confidence            9999999999999999999766544322211   00000                                      000


Q ss_pred             CCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         202 REPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       202 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                      ......++++.+||.+||+.||++|||++|+++||||+....
T Consensus       296 ~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  337 (339)
T 1z57_A          296 LSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDLLKK  337 (339)
T ss_dssp             SCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGGGC
T ss_pred             ccchhhHHHHHHHHHHHhCcCcccccCHHHHhcCHHHHHHhc
Confidence            111223567899999999999999999999999999997653

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=100.00  E-value=8.5e-40  Score=277.73  Aligned_cols=199  Identities=26%  Similarity=0.449  Sum_probs=167.9

Q ss_pred             CCCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHH
Q psy3253           1 MQQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYL   64 (251)
Q Consensus         1 l~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~L   64 (251)
                      |+++ +||||+++++++.+....++||||+++|+|.+++....               ..+++..++.++.||+.||.||
T Consensus        79 l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~L  158 (327)
T 1fvr_A           79 LCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL  158 (327)
T ss_dssp             HTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCchhhhceeeeeCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence            3567 89999999999999999999999999999999997432               4799999999999999999999


Q ss_pred             HhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccc
Q psy3253          65 HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGT  144 (251)
Q Consensus        65 H~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  144 (251)
                      |++|++|||||                                 |+||+++.++.++|+|||++...... .......++
T Consensus       159 H~~~ivH~dlk---------------------------------p~NIl~~~~~~~kL~Dfg~~~~~~~~-~~~~~~~~~  204 (327)
T 1fvr_A          159 SQKQFIHRDLA---------------------------------ARNILVGENYVAKIADFGLSRGQEVY-VKKTMGRLP  204 (327)
T ss_dssp             HHTTEECSCCS---------------------------------GGGEEECGGGCEEECCTTCEESSCEE-CCC----CC
T ss_pred             HhCCccCCCCc---------------------------------cceEEEcCCCeEEEcccCcCcccccc-ccccCCCCC
Confidence            99999999988                                 88999988999999999998643322 222334467


Q ss_pred             cccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCc
Q psy3253         145 PFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP  223 (251)
Q Consensus       145 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  223 (251)
                      +.|+|||.+.+..++.++||||+||++|+|++ |..||.+.+.......+.....  ...+..+++++.+++.+||..||
T Consensus       205 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~dp  282 (327)
T 1fvr_A          205 VRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYR--LEKPLNCDDEVYDLMRQCWREKP  282 (327)
T ss_dssp             TTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCC--CCCCTTBCHHHHHHHHHHTCSSG
T ss_pred             ccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcCCC--CCCCCCCCHHHHHHHHHHccCCh
Confidence            78999999988889999999999999999998 9999987776665555444322  23356789999999999999999


Q ss_pred             CccCCHHHHhcC
Q psy3253         224 EERATASEMLNH  235 (251)
Q Consensus       224 ~~Rps~~evl~h  235 (251)
                      ++|||++|++++
T Consensus       283 ~~Rps~~ell~~  294 (327)
T 1fvr_A          283 YERPSFAQILVS  294 (327)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hhCcCHHHHHHH
Confidence            999999999976

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=1.8e-39  Score=287.51  Aligned_cols=196  Identities=28%  Similarity=0.475  Sum_probs=166.0

Q ss_pred             CCCCCCCccceeeeeEeeCC-eEEEEEEccCCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT-DLWIVMEYCGAGSVSDIMRLRKK-TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~-~~~lv~e~~~~gsL~~~~~~~~~-~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++.+.. ..|+||||+++|+|.++++..+. .+++..++.++.||+.||.|||++|++|||||   
T Consensus       240 l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlk---  316 (450)
T 1k9a_A          240 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLA---  316 (450)
T ss_dssp             HHTCCCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC---
T ss_pred             HHhccCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC---
Confidence            45789999999999987654 79999999999999999986544 47999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                    |+||+++.++.+||+|||+++.....   .....++..|+|||++.+..+
T Consensus       317 ------------------------------p~Nill~~~~~~kl~DfG~a~~~~~~---~~~~~~~~~y~aPE~~~~~~~  363 (450)
T 1k9a_A          317 ------------------------------ARNVLVSEDNVAKVSDFGLTKEASST---QDTGKLPVKWTAPEALREKKF  363 (450)
T ss_dssp             ------------------------------GGGEEECTTSCEEECCCTTCEECC---------CCCTTTSCHHHHHSSCC
T ss_pred             ------------------------------HhhEEECCCCCEEEeeCCCccccccc---ccCCCCCcceeCHHHhcCCCC
Confidence                                          88999999999999999999754322   122346788999999999999


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|||||||++|+|++ |..||.+.........+..+.  ....+..+++++.++|.+||+.||++|||++|+++
T Consensus       364 ~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~--~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~  438 (450)
T 1k9a_A          364 STKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGY--KMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLRE  438 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTTC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC--CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            999999999999999998 999998776665555444433  23346778999999999999999999999999974

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.5e-40  Score=280.10  Aligned_cols=202  Identities=24%  Similarity=0.395  Sum_probs=158.8

Q ss_pred             CCCCCCccceeeeeEeeCC--eEEEEEEccCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNT--DLWIVMEYCGAGSVSDIMRLRK--KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~--~~~lv~e~~~~gsL~~~~~~~~--~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      ++++||||+++++++....  ..++||||+++++|.+++....  ..+++..++.++.||+.||.|||++|++|||||  
T Consensus        62 ~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk--  139 (319)
T 4euu_A           62 KKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIK--  139 (319)
T ss_dssp             HHCCCTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS--
T ss_pred             HhcCCCCcceEEEEeecCCCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCC--
Confidence            4689999999999998655  7899999999999999997433  339999999999999999999999999999999  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceec----CCCCCeEecccccccccCccccccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL----NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~----~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  153 (251)
                                                     |+||++    +.++.+||+|||+++...... ......+|+.|+|||++
T Consensus       140 -------------------------------p~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~  187 (319)
T 4euu_A          140 -------------------------------PGNIMRVIGEDGQSVYKLTDFGAARELEDDE-QFVSLYGTEEYLHPDMY  187 (319)
T ss_dssp             -------------------------------GGGEEEEECTTSCEEEEECCCTTCEECCTTC-CBCCCCSCGGGCCHHHH
T ss_pred             -------------------------------HHHEEEeccCCCCceEEEccCCCceecCCCC-ceeecccCCCccCHHHh
Confidence                                           777776    566779999999997655432 23345689999999998


Q ss_pred             c--------cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc----hhhhhcCCCCC----------------------C
Q psy3253         154 Q--------EIGYDCVADMWSLGITALEMAEGKPPYGDIHPM----RAIFMIPTKPP----------------------P  199 (251)
Q Consensus       154 ~--------~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~----~~~~~~~~~~~----------------------~  199 (251)
                      .        +..++.++|||||||++|+|++|..||......    .....+....+                      .
T Consensus       188 ~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  267 (319)
T 4euu_A          188 ERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPV  267 (319)
T ss_dssp             HHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCT
T ss_pred             hhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCc
Confidence            6        567899999999999999999999999543221    11111111110                      0


Q ss_pred             CCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         200 SFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       200 ~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      .......+++.+.+++.+||+.||++|||++|+++||-
T Consensus       268 ~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~  305 (319)
T 4euu_A          268 SCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS  305 (319)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred             ccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccH
Confidence            01112233567899999999999999999999999984

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=100.00  E-value=7.2e-40  Score=278.45  Aligned_cols=198  Identities=25%  Similarity=0.431  Sum_probs=167.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++. .++|+||+.+|+|.+++......+++..++.++.|++.||.|||++|++|||||      
T Consensus        72 ~~l~h~~iv~~~~~~~~~~-~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dik------  144 (327)
T 3poz_A           72 ASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLA------  144 (327)
T ss_dssp             HHCCBTTBCCEEEEEESSS-EEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC------
T ss_pred             HhCCCCCEeEEEEEEecCC-eEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCC------
Confidence            4689999999999998754 789999999999999998777889999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--ccccccccccccccccccCCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                 |+||+++.++.+||+|||+++........  .....+|..|+|||.+.+..++
T Consensus       145 ---------------------------p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~  197 (327)
T 3poz_A          145 ---------------------------ARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYT  197 (327)
T ss_dssp             ---------------------------GGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCC
T ss_pred             ---------------------------hheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCC
Confidence                                       88999999999999999999765433221  2223457789999999999999


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++|||||||++|++++ |..||.+.........+....  ....+..++.++.+++.+||+.||++|||++|++++
T Consensus       198 ~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~  272 (327)
T 3poz_A          198 HQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGE--RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  272 (327)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC--CCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHH
T ss_pred             chhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCC--CCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence            99999999999999999 999998776655554444333  223356689999999999999999999999999865

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=6.4e-40  Score=284.48  Aligned_cols=201  Identities=26%  Similarity=0.414  Sum_probs=158.5

Q ss_pred             CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHH--hCCccccCCCCCCCCcc
Q psy3253           6 SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLH--LRRKIHRDIKAGSGTLV   82 (251)
Q Consensus         6 hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH--~~~iiH~dik~~Ni~~~   82 (251)
                      |++|+++++++....+.|+||||+. ++|.+++.... ..+++..++.++.|++.||.|||  +.||+|||||       
T Consensus       115 ~~~iv~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlk-------  186 (382)
T 2vx3_A          115 KYYIVHLKRHFMFRNHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLK-------  186 (382)
T ss_dssp             GGGBCCEEEEEEETTEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCS-------
T ss_pred             ceeEEEeeeeeccCCceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCC-------
Confidence            4569999999999999999999995 59999997544 56999999999999999999999  5799999988       


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecC--CCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN--TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~--~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                |+||+++  .++.+||+|||+++.....   .....+|+.|+|||++.+..++.
T Consensus       187 --------------------------p~NIll~~~~~~~~kL~DFG~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~  237 (382)
T 2vx3_A          187 --------------------------PENILLCNPKRSAIKIVDFGSSCQLGQR---IYQYIQSRFYRSPEVLLGMPYDL  237 (382)
T ss_dssp             --------------------------GGGEEESSTTSCCEEECCCTTCEETTCC---CCSSCSCGGGCCHHHHTTCCCCT
T ss_pred             --------------------------cccEEEecCCCCcEEEEeccCceecccc---cccccCCccccChHHHcCCCCCc
Confidence                                      7788884  4678999999999765432   23456789999999999989999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC---C-------------------------------CCCCCCCC-
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK---P-------------------------------PPSFREPD-  205 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~---~-------------------------------~~~~~~~~-  205 (251)
                      ++|||||||++|+|++|.+||.+.+.......+...   .                               ...+..+. 
T Consensus       238 ~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (382)
T 2vx3_A          238 AIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGT  317 (382)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCCTTCCCSCCTTC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhHHHHHHHHhccccccccccccccccccCCcch
Confidence            999999999999999999999766544332211100   0                               00000000 


Q ss_pred             ----------------------C----CCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         206 ----------------------V----WTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       206 ----------------------~----~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                                            .    ..+++.+||.+||++||++|||++|+|+||||+...+
T Consensus       318 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~e~L~hp~f~~~~~  381 (382)
T 2vx3_A          318 RKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKTAD  381 (382)
T ss_dssp             SCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGCC---
T ss_pred             hhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhCCCHHHHhcCcccccCCC
Confidence                                  0    0137899999999999999999999999999987655

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=100.00  E-value=1.8e-39  Score=271.95  Aligned_cols=199  Identities=23%  Similarity=0.447  Sum_probs=165.1

Q ss_pred             CCCCCCCccceeeeeEe-eCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYF-KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~-~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++. .+...++||||+++|+|.+++......+++..+..++.|++.||.|||++|++|||||    
T Consensus        80 l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dik----  155 (298)
T 3f66_A           80 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLA----  155 (298)
T ss_dssp             HHTCCCTTBCCCCEEECCSSSCCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS----
T ss_pred             HHhCCCCCEeeeeeEEEcCCCceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCc----
Confidence            35789999999999864 5567899999999999999998666789999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc----ccccccccccccccccccc
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA----KRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~  155 (251)
                                                   |+||+++.++.++|+|||++........    ......+|+.|+|||.+.+
T Consensus       156 -----------------------------p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  206 (298)
T 3f66_A          156 -----------------------------ARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQT  206 (298)
T ss_dssp             -----------------------------GGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHH
T ss_pred             -----------------------------hheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcC
Confidence                                         8899999999999999999976543221    1233446778999999998


Q ss_pred             CCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         156 IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ..++.++||||+|+++|++++ |.+||.+.........+.....  ...+..+++.+.+++.+||+.||++|||++|+++
T Consensus       207 ~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~  284 (298)
T 3f66_A          207 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRR--LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS  284 (298)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTCC--CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCCC--CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            899999999999999999999 6677766655554444433322  2235668999999999999999999999999985

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=5.7e-40  Score=280.42  Aligned_cols=201  Identities=23%  Similarity=0.424  Sum_probs=166.2

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCC----------------------CCCHHHHHHHHHHHH
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK----------------------TLSEDEIATILCDTL   58 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~----------------------~l~~~~~~~~~~~i~   58 (251)
                      +++ +||||+++++++......++||||+++|+|.+++.....                      .+++..++.++.||+
T Consensus       103 ~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~  182 (344)
T 1rjb_A          103 TQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVA  182 (344)
T ss_dssp             HHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHH
T ss_pred             HhhcCCCCeeeEEEEEeeCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHH
Confidence            345 899999999999999999999999999999999974432                      378999999999999


Q ss_pred             HHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--
Q psy3253          59 KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--  136 (251)
Q Consensus        59 ~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--  136 (251)
                      .||.|||++|++|||||                                 |+||+++.++.++|+|||++........  
T Consensus       183 ~aL~~LH~~~ivH~Dik---------------------------------p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~  229 (344)
T 1rjb_A          183 KGMEFLEFKSCVHRDLA---------------------------------ARNVLVTHGKVVKICDFGLARDIMSDSNYV  229 (344)
T ss_dssp             HHHHHHHHTTEEETTCS---------------------------------GGGEEEETTTEEEECCCGGGSCGGGCTTSE
T ss_pred             HHHHHHHhCCcccCCCC---------------------------------hhhEEEcCCCcEEeCCCccCcccccCccce
Confidence            99999999999999988                                 8899999999999999999976543221  


Q ss_pred             cccccccccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHH
Q psy3253         137 KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFV  215 (251)
Q Consensus       137 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  215 (251)
                      ......+|+.|+|||.+.+..++.++|||||||++|+|++ |..||.+.............. .....+..+++++.+++
T Consensus       230 ~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li  308 (344)
T 1rjb_A          230 VRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNG-FKMDQPFYATEEIYIIM  308 (344)
T ss_dssp             EETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTT-CCCCCCTTCCHHHHHHH
T ss_pred             eccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHHHHHHHHhcC-CCCCCCCCCCHHHHHHH
Confidence            2233456788999999988899999999999999999998 999997765443332221111 12233566799999999


Q ss_pred             HHhhhcCcCccCCHHHHhcCh
Q psy3253         216 SRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       216 ~~~l~~~p~~Rps~~evl~hp  236 (251)
                      .+||+.||++|||++|++++.
T Consensus       309 ~~~l~~dp~~Rps~~~l~~~l  329 (344)
T 1rjb_A          309 QSCWAFDSRKRPSFPNLTSFL  329 (344)
T ss_dssp             HHHTCSSGGGSCCHHHHHHHH
T ss_pred             HHHcCCCchhCcCHHHHHHHH
Confidence            999999999999999999764

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=100.00  E-value=2.3e-39  Score=273.43  Aligned_cols=205  Identities=26%  Similarity=0.475  Sum_probs=157.9

Q ss_pred             CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccc
Q psy3253           6 SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDR   85 (251)
Q Consensus         6 hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~   85 (251)
                      ||||+++++++.++...++|||+ .+++|.+++. ....+++..++.++.|++.||.|||++|++|||||          
T Consensus        87 ~~~iv~~~~~~~~~~~~~lv~e~-~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlk----------  154 (313)
T 3cek_A           87 SDKIIRLYDYEITDQYIYMVMEC-GNIDLNSWLK-KKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLK----------  154 (313)
T ss_dssp             CTTBCCEEEEEECSSEEEEEECC-CSEEHHHHHH-HCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC----------
T ss_pred             CCceEEEEEEeecCCEEEEEEec-CCCcHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCC----------
Confidence            69999999999999999999995 4789999997 45689999999999999999999999999999988          


Q ss_pred             cccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccccccccccc--------
Q psy3253          86 LDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQE--------  155 (251)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~--------  155 (251)
                                             |+||+++ ++.+||+|||++........  ......+++.|+|||.+.+        
T Consensus       155 -----------------------p~NIl~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  210 (313)
T 3cek_A          155 -----------------------PANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENG  210 (313)
T ss_dssp             -----------------------GGGEEEE-TTEEEECCCSSSCC--------------CCGGGCCHHHHTTCC------
T ss_pred             -----------------------cccEEEE-CCeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccc
Confidence                                   7788885 47899999999976543221  1233467899999999865        


Q ss_pred             ---CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHH
Q psy3253         156 ---IGYDCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE  231 (251)
Q Consensus       156 ---~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e  231 (251)
                         ..++.++||||||+++|+|++|..||...... .....+... ......+...+.++.+++.+||+.||++|||++|
T Consensus       211 ~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e  289 (313)
T 3cek_A          211 KSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDP-NHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPE  289 (313)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCT-TSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred             cccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhc-ccccCCcccchHHHHHHHHHHccCCcccCcCHHH
Confidence               46888999999999999999999999764332 222111111 1122335566899999999999999999999999


Q ss_pred             HhcChhhhhccCCCCC
Q psy3253         232 MLNHEFIQRHDTDPSQ  247 (251)
Q Consensus       232 vl~hp~~~~~~~~~~~  247 (251)
                      +++||||+......++
T Consensus       290 ll~h~~~~~~~~~~~~  305 (313)
T 3cek_A          290 LLAHPYVQIQTHPVNQ  305 (313)
T ss_dssp             HHTSHHHHCC------
T ss_pred             HhcCccccCCCCchhh
Confidence            9999999987666554

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.4e-39  Score=277.45  Aligned_cols=199  Identities=23%  Similarity=0.386  Sum_probs=164.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+....++||||+++|+|.+++......+++..++.++.||+.||.|||++|++|||||      
T Consensus       101 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik------  174 (333)
T 1mqb_A          101 GQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLA------  174 (333)
T ss_dssp             HTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC------
T ss_pred             HhCCCCCCCcEEEEEecCCCcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC------
Confidence            57899999999999999999999999999999999998666789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc---ccccccccccccccccccCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                 |+||+++.++.++|+|||++.........   .....++..|+|||++.+..+
T Consensus       175 ---------------------------p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  227 (333)
T 1mqb_A          175 ---------------------------ARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKF  227 (333)
T ss_dssp             ---------------------------GGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCC
T ss_pred             ---------------------------hheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCC
Confidence                                       88999999999999999999765432211   122234678999999998899


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      +.++|||||||++|++++ |..||.+.........+.....  ...+..+++++.+++.+||+.||++||+++|++++
T Consensus       228 ~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  303 (333)
T 1mqb_A          228 TSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFR--LPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSI  303 (333)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCC--CCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             CchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHCCCc--CCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            999999999999999998 9999987766655544443322  22356789999999999999999999999999865

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=100.00  E-value=8.7e-40  Score=270.19  Aligned_cols=196  Identities=26%  Similarity=0.517  Sum_probs=157.5

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC---ccccCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR---KIHRDIKAGS   78 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~---iiH~dik~~N   78 (251)
                      ++++||||+++++++.++...++||||+++++|.+++.  ...+++..+..++.|++.||.|||++|   ++|||||   
T Consensus        61 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~--~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dik---  135 (271)
T 3dtc_A           61 AMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLS--GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLK---  135 (271)
T ss_dssp             HHCCCTTBCCEEEEECCC--CEEEEECCTTEEHHHHHT--SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCS---
T ss_pred             HhcCCCCEeeEEEEEecCCceEEEEEcCCCCCHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCc---
Confidence            46799999999999999999999999999999999985  568999999999999999999999999   8999999   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCC--------CCCeEecccccccccCcccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT--------EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAP  150 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~--------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  150 (251)
                                                    |+||+++.        ++.++|+|||++.......  .....+++.|+||
T Consensus       136 ------------------------------p~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~~~y~aP  183 (271)
T 3dtc_A          136 ------------------------------SSNILILQKVENGDLSNKILKITDFGLAREWHRTT--KMSAAGAYAWMAP  183 (271)
T ss_dssp             ------------------------------GGGEEESSCCSSSCCSSCCEEECCCCC---------------CCGGGSCH
T ss_pred             ------------------------------hHHEEEecccccccccCcceEEccCCccccccccc--ccCCCCccceeCH
Confidence                                          66666654        6779999999997654332  2234678999999


Q ss_pred             cccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         151 EVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       151 E~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      |.+.+..++.++||||+|+++|++++|..||.+.+.......+.... .....+..+++++.+++.+||+.||++|||++
T Consensus       184 E~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  262 (271)
T 3dtc_A          184 EVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNK-LALPIPSTCPEPFAKLMEDCWNPDPHSRPSFT  262 (271)
T ss_dssp             HHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSC-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCC-CCCCCCcccCHHHHHHHHHHhcCCcccCcCHH
Confidence            99998889999999999999999999999998776655444333222 22334677899999999999999999999999


Q ss_pred             HHhcC
Q psy3253         231 EMLNH  235 (251)
Q Consensus       231 evl~h  235 (251)
                      |++++
T Consensus       263 e~l~~  267 (271)
T 3dtc_A          263 NILDQ  267 (271)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=6.5e-40  Score=273.50  Aligned_cols=200  Identities=27%  Similarity=0.459  Sum_probs=169.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++ .....++||||+.+++|.+++......+++..+..++.|++.||.|||++|++|||||      
T Consensus        65 ~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk------  137 (287)
T 1u59_A           65 HQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLA------  137 (287)
T ss_dssp             HHCCCTTBCCEEEEE-ESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCS------
T ss_pred             HhCCCCCEeEEEEEe-cCCCcEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCc------
Confidence            467999999999999 5567999999999999999997556779999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---cccccccccccccccccccCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                 |+||+++.++.++|+|||++........   ......+++.|+|||++.+..+
T Consensus       138 ---------------------------p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  190 (287)
T 1u59_A          138 ---------------------------ARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKF  190 (287)
T ss_dssp             ---------------------------GGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEE
T ss_pred             ---------------------------hheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCC
Confidence                                       8899999899999999999976543211   1222345788999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++||||+|+++|+|++ |..||...........+......  ..+..+++++.++|.+||+.||++|||++|++++.+
T Consensus       191 ~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~~~--~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~  268 (287)
T 1u59_A          191 SSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRM--ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMR  268 (287)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCC--CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCCcC--CCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence            999999999999999998 99999877665555444443322  235678999999999999999999999999998753

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=276.04  Aligned_cols=199  Identities=26%  Similarity=0.436  Sum_probs=163.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++. .+++++|+.+|+|.+++......+++..++.++.|++.||.|||++|++|||||     
T Consensus        71 l~~l~hp~iv~~~~~~~~~~-~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dik-----  144 (327)
T 3lzb_A           71 MASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLA-----  144 (327)
T ss_dssp             HTTCCBTTBCCCCEEEESSS-EEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HHhCCCCCeeEEEEEEecCC-ceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCC-----
Confidence            46789999999999998664 889999999999999998777889999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.++|+|||+++.......  ......+++.|+|||.+.+..+
T Consensus       145 ----------------------------p~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  196 (327)
T 3lzb_A          145 ----------------------------ARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIY  196 (327)
T ss_dssp             ----------------------------GGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCC
T ss_pred             ----------------------------HHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCC
Confidence                                        8899998889999999999976543221  1222345778999999999999


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      +.++|||||||++|+|++ |..||.+.........+.....  ...+..++.++.+++.+||..||++|||++|+++.
T Consensus       197 ~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  272 (327)
T 3lzb_A          197 THQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGER--LPQPPICTIDVYMIMRKCWMIDADSRPKFRELIIE  272 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCC--CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCC--CCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            999999999999999999 9999987766665554444332  23356689999999999999999999999999853

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=3.5e-40  Score=283.13  Aligned_cols=198  Identities=29%  Similarity=0.517  Sum_probs=162.6

Q ss_pred             CC-CCCccceeeeeEeeCC-eEEEEEEccCCCCHHHHHHHhCC-------------------------------------
Q psy3253           3 QC-DSPYVVKYYGSYFKNT-DLWIVMEYCGAGSVSDIMRLRKK-------------------------------------   43 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~~-~~~lv~e~~~~gsL~~~~~~~~~-------------------------------------   43 (251)
                      ++ +||||+++++++.+.. ..++||||+.+|+|.+++.....                                     
T Consensus        81 ~l~~hpniv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (359)
T 3vhe_A           81 HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQ  160 (359)
T ss_dssp             HHCCCTTBCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-------------------------------
T ss_pred             hhcCCcceeeeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccc
Confidence            34 7999999999998754 48999999999999999974322                                     


Q ss_pred             ----------------------------CCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccc
Q psy3253          44 ----------------------------TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNV   95 (251)
Q Consensus        44 ----------------------------~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~   95 (251)
                                                  .+++..++.++.|++.||.|||++|++|||||                    
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dik--------------------  220 (359)
T 3vhe_A          161 SSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLA--------------------  220 (359)
T ss_dssp             -----------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS--------------------
T ss_pred             cccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCC--------------------
Confidence                                        18999999999999999999999999999988                    


Q ss_pred             cchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--ccccccccccccccccccccCCCCcchhHHHHHHHHHH
Q psy3253          96 ITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALE  173 (251)
Q Consensus        96 ~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~  173 (251)
                                   |+||+++.++.++|+|||++.......  .......+|+.|+|||++.+..++.++|||||||++|+
T Consensus       221 -------------p~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~e  287 (359)
T 3vhe_A          221 -------------ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE  287 (359)
T ss_dssp             -------------GGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             -------------hhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHH
Confidence                         889999989999999999997653321  22334567888999999999999999999999999999


Q ss_pred             HHh-CCCCCCCCCcchhhhh-cCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         174 MAE-GKPPYGDIHPMRAIFM-IPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       174 l~~-g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      |++ |..||.+......... +....  ....+..+++++.+++.+||+.||++|||++|+++|
T Consensus       288 llt~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  349 (359)
T 3vhe_A          288 IFSLGASPYPGVKIDEEFCRRLKEGT--RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  349 (359)
T ss_dssp             HTTTSCCSSTTCCCSHHHHHHHHHTC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHhcCCCCCCccchhHHHHHHHHcCC--CCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHH
Confidence            998 9999976654333222 22221  223356689999999999999999999999999976

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=279.99  Aligned_cols=203  Identities=26%  Similarity=0.466  Sum_probs=162.1

Q ss_pred             CCCCCCccceeeeeEeeCCe------EEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTD------LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~------~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      ++++||||+++++++.....      .|+||||+. ++|.+++.   ..+++..+..++.||+.||.|||++|++|||||
T Consensus        78 ~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~---~~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlk  153 (353)
T 3coi_A           78 KHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMG---LKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLK  153 (353)
T ss_dssp             HHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCS-EEGGGTTT---SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred             HhcCCCCcccHhheEecccccccceeEEEEecccc-CCHHHHhc---CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCC
Confidence            46799999999999986643      599999996 58888763   469999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.++|+|||++......   .....+|+.|+|||++.+
T Consensus       154 ---------------------------------p~NIl~~~~~~~kl~Dfg~~~~~~~~---~~~~~~t~~y~aPE~~~~  197 (353)
T 3coi_A          154 ---------------------------------PGNLAVNEDCELKILDFGLARHADAE---MTGYVVTRWYRAPEVILS  197 (353)
T ss_dssp             ---------------------------------GGGEEECTTCCEEECSTTCTTC-----------CCSBCCSCHHHHSC
T ss_pred             ---------------------------------HHHEeECCCCcEEEeecccccCCCCC---ccccccCcCcCCHHHHhC
Confidence                                             88999999999999999999764422   233467899999999876


Q ss_pred             -CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---------------------------CCCCCCC-CCCCCC
Q psy3253         156 -IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---------------------------PTKPPPS-FREPDV  206 (251)
Q Consensus       156 -~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---------------------------~~~~~~~-~~~~~~  206 (251)
                       ..++.++||||+||++|+|++|..||.+.+.......+                           ....... ......
T Consensus       198 ~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (353)
T 3coi_A          198 WMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPR  277 (353)
T ss_dssp             CSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTT
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCC
Confidence             67899999999999999999999999765533222111                           0111111 112346


Q ss_pred             CCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         207 WTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       207 ~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      +++++.++|.+||+.||++|||++|+++||||+.....
T Consensus       278 ~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~  315 (353)
T 3coi_A          278 ASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRDP  315 (353)
T ss_dssp             SCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCCG
T ss_pred             cCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhccCc
Confidence            78999999999999999999999999999999876543

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=3.1e-39  Score=270.25  Aligned_cols=200  Identities=23%  Similarity=0.455  Sum_probs=166.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeE-EEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDL-WIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~-~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.+.... +++|||+.+|+|.+++......+++..+..++.|++.||.|||++|++|||||    
T Consensus        76 l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dik----  151 (298)
T 3pls_A           76 MRGLNHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLA----  151 (298)
T ss_dssp             HHTCCCTTBCCCCEEECCSSSCCEEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCS----
T ss_pred             HHhCCCCCeeeEEEEEecCCCCcEEEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC----
Confidence            3578999999999999876654 99999999999999998666789999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc----cccccccccccccccccccc
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM----AKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                   |+||+++.++.++|+|||++.......    .......+++.|+|||.+.+
T Consensus       152 -----------------------------p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  202 (298)
T 3pls_A          152 -----------------------------ARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQT  202 (298)
T ss_dssp             -----------------------------GGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTT
T ss_pred             -----------------------------cceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhcc
Confidence                                         889999999999999999997554321    12233456788999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         156 IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ..++.++||||+|+++|+|++ +.+||...+.......+.....  ...+..+++++.+++.+||+.||++|||++|+++
T Consensus       203 ~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~  280 (298)
T 3pls_A          203 YRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRR--LPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVG  280 (298)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCC--CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCC--CCCCccchHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            999999999999999999999 5556666555555444433332  2335678999999999999999999999999985


Q ss_pred             C
Q psy3253         235 H  235 (251)
Q Consensus       235 h  235 (251)
                      .
T Consensus       281 ~  281 (298)
T 3pls_A          281 E  281 (298)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=100.00  E-value=5.2e-40  Score=273.95  Aligned_cols=194  Identities=21%  Similarity=0.365  Sum_probs=158.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++...++||||+++|+|.+++......+++..+..++.|++.||.|||++|++|||||     
T Consensus        66 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk-----  140 (289)
T 4fvq_A           66 MSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVC-----  140 (289)
T ss_dssp             HHTSCCTTBCCEEEEECCTTCCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----
T ss_pred             HHhCCCCCEeEEEEEEEeCCCCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcC-----
Confidence            357899999999999999999999999999999999998666669999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCC--------eEecccccccccCcccccccccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH--------AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEV  152 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~--------~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  152 (251)
                                                  |+||+++.++.        ++|+|||++......    ....+++.|+|||+
T Consensus       141 ----------------------------p~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~  188 (289)
T 4fvq_A          141 ----------------------------AKNILLIREEDRKTGNPPFIKLSDPGISITVLPK----DILQERIPWVPPEC  188 (289)
T ss_dssp             ----------------------------GGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCH----HHHHHTTTTSCHHH
T ss_pred             ----------------------------cceEEEecCCcccccccceeeeccCcccccccCc----cccCCcCcccCHHH
Confidence                                        66666665554        999999998654332    23456888999999


Q ss_pred             ccc-CCCCcchhHHHHHHHHHHHHhC-CCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         153 IQE-IGYDCVADMWSLGITALEMAEG-KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       153 ~~~-~~~~~~~DvwslG~~l~~l~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      +.+ ..++.++||||+||++|+|++| .+||...+...........    ...+...++++.+++.+||+.||++|||++
T Consensus       189 ~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~li~~~l~~dp~~Rps~~  264 (289)
T 4fvq_A          189 IENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDR----HQLPAPKAAELANLINNCMDYEPDHRPSFR  264 (289)
T ss_dssp             HHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTT----CCCCCCSSCTTHHHHHHHSCSSGGGSCCHH
T ss_pred             hCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhcc----CCCCCCCCHHHHHHHHHHcCCChhHCcCHH
Confidence            987 7789999999999999999995 5555554443333222221    122445688899999999999999999999


Q ss_pred             HHhcC
Q psy3253         231 EMLNH  235 (251)
Q Consensus       231 evl~h  235 (251)
                      |++++
T Consensus       265 ~ll~~  269 (289)
T 4fvq_A          265 AIIRD  269 (289)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99965

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=100.00  E-value=1.1e-39  Score=277.06  Aligned_cols=203  Identities=23%  Similarity=0.376  Sum_probs=168.7

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC------CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK------KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      ++++||||+++++++.+....|+||||+++++|.+++....      ..+++..++.++.|++.||.|||++|++|||||
T Consensus        88 ~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlk  167 (327)
T 2yfx_A           88 SKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIA  167 (327)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC
T ss_pred             hhCCCCCCCeEEEEEcCCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCC
Confidence            46799999999999999999999999999999999998543      358999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCC---CCCeEecccccccccCccc--ccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---EGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAP  150 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~---~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aP  150 (251)
                                                       |+||+++.   +..++|+|||++.......  .......+++.|+||
T Consensus       168 ---------------------------------p~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  214 (327)
T 2yfx_A          168 ---------------------------------ARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPP  214 (327)
T ss_dssp             ---------------------------------GGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCH
T ss_pred             ---------------------------------HhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCH
Confidence                                             77888873   4469999999986543221  122334568889999


Q ss_pred             cccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         151 EVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       151 E~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                      |.+.+..++.++|||||||++|+|++ |..||...........+......  ..+..+++.+.++|.+||+.||++|||+
T Consensus       215 E~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~  292 (327)
T 2yfx_A          215 EAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRM--DPPKNCPGPVYRIMTQCWQHQPEDRPNF  292 (327)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             hHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCCCC--CCCCCCCHHHHHHHHHHhcCChhhCcCH
Confidence            99988889999999999999999998 99999877665555444433222  2356789999999999999999999999


Q ss_pred             HHHhcChhhh
Q psy3253         230 SEMLNHEFIQ  239 (251)
Q Consensus       230 ~evl~hp~~~  239 (251)
                      +|++++.|+-
T Consensus       293 ~~ll~~l~~~  302 (327)
T 2yfx_A          293 AIILERIEYC  302 (327)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=2.5e-40  Score=285.18  Aligned_cols=199  Identities=19%  Similarity=0.239  Sum_probs=160.0

Q ss_pred             CCCCCCccceeeeeEeeC----CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKN----TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~----~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      ++++||||+++++++...    ...|+||||+ +++|.+++......+++..++.++.||+.||.|||++||+|||||  
T Consensus       103 ~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlk--  179 (364)
T 3op5_A          103 RKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIK--  179 (364)
T ss_dssp             TTCSCCCSCCEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC--
T ss_pred             hhccCCCCCeEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCC--
Confidence            568999999999999764    4589999999 999999998766889999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecC--CCCCeEecccccccccCccccc-------ccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN--TEGHAKLADFGVAGQLTDTMAK-------RNTVIGTPFWM  148 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~--~~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~~y~  148 (251)
                                                     |+||+++  .++.+||+|||+++........       .....||+.|+
T Consensus       180 -------------------------------p~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~  228 (364)
T 3op5_A          180 -------------------------------ASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFT  228 (364)
T ss_dssp             -------------------------------GGGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTC
T ss_pred             -------------------------------HHHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCcc
Confidence                                           8888887  7889999999999765432211       12334899999


Q ss_pred             cccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhh-cCC---CCCC----CCCCCCCCCHHHHHHHHHhhh
Q psy3253         149 APEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM-IPT---KPPP----SFREPDVWTPEFIDFVSRCLV  220 (251)
Q Consensus       149 aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~-~~~---~~~~----~~~~~~~~~~~~~~li~~~l~  220 (251)
                      |||++.+..++.++|||||||++|+|++|..||.+......... ...   ....    .......+++++.+++.+||.
T Consensus       229 aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~  308 (364)
T 3op5_A          229 SIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKL  308 (364)
T ss_dssp             CHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHHHHHHT
T ss_pred             CHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcccccCHHHHHHHHHHHhc
Confidence            99999998999999999999999999999999975322211110 000   0000    000125679999999999999


Q ss_pred             cCcCccCCHHHHhc
Q psy3253         221 KNPEERATASEMLN  234 (251)
Q Consensus       221 ~~p~~Rps~~evl~  234 (251)
                      .||++||+++++++
T Consensus       309 ~~p~~RP~~~~l~~  322 (364)
T 3op5_A          309 LDYTEKPLYENLRD  322 (364)
T ss_dssp             CCTTCCCCHHHHHH
T ss_pred             CCCCCCCCHHHHHH
Confidence            99999999999864

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=100.00  E-value=1.7e-39  Score=270.01  Aligned_cols=198  Identities=25%  Similarity=0.428  Sum_probs=163.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.++ ..++||||+.+++|.+++......+++..+..++.|++.||.|||++|++|||||      
T Consensus        68 ~~l~h~~i~~~~~~~~~~-~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk------  140 (281)
T 3cc6_A           68 KNLDHPHIVKLIGIIEEE-PTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIA------  140 (281)
T ss_dssp             HHHCCTTBCCEEEEECSS-SCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS------
T ss_pred             HhCCCCCcceEEEEEcCC-CCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCc------
Confidence            457899999999998654 5789999999999999998777789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                 |+||+++.++.++|+|||++........ ......+++.|+|||.+.+..++.
T Consensus       141 ---------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  193 (281)
T 3cc6_A          141 ---------------------------VRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTT  193 (281)
T ss_dssp             ---------------------------GGGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCH
T ss_pred             ---------------------------cceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCc
Confidence                                       8899998899999999999976543321 123334577899999998889999


Q ss_pred             chhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         161 VADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++||||||+++|+|++ |..||...........+.....  ...+..+++.+.+++.+||+.||++|||++|++++
T Consensus       194 ~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~  267 (281)
T 3cc6_A          194 ASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDR--LPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCS  267 (281)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTCC--CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             hhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCCC--CCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHH
Confidence            9999999999999998 9999976655554443333222  22356689999999999999999999999999865

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=1.6e-39  Score=290.95  Aligned_cols=199  Identities=22%  Similarity=0.412  Sum_probs=169.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.+....|+||||+.+|+|.++++.. ...+++..++.++.||+.||.|||++|++|||||    
T Consensus       270 l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlk----  345 (495)
T 1opk_A          270 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLA----  345 (495)
T ss_dssp             HHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCS----
T ss_pred             HHhcCCCCEeeEEEEEecCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC----
Confidence            35689999999999999999999999999999999999753 3568999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.+||+|||+++....... ......++..|+|||++.+..+
T Consensus       346 -----------------------------p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  396 (495)
T 1opk_A          346 -----------------------------ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKF  396 (495)
T ss_dssp             -----------------------------GGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEE
T ss_pred             -----------------------------hhhEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCCC
Confidence                                         8899999999999999999976543221 2223345678999999998889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|||||||++|+|++ |..||.+.+.......+....  ....+..+++++.+||.+||+.||++|||++|+++
T Consensus       397 ~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~  471 (495)
T 1opk_A          397 SIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDY--RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  471 (495)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC--CCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHH
Confidence            999999999999999999 999998777665554444332  23346778999999999999999999999999984

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=100.00  E-value=1.5e-39  Score=288.29  Aligned_cols=198  Identities=25%  Similarity=0.435  Sum_probs=167.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++. ....|+||||+.+|+|.++++.. ...+++..+..++.||+.||.|||++|++|||||    
T Consensus       237 l~~l~h~~iv~l~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlk----  311 (454)
T 1qcf_A          237 MKTLQHDKLVKLHAVVT-KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLR----  311 (454)
T ss_dssp             HTTCCCTTBCCEEEEEC-SSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCS----
T ss_pred             HhhCCCCCEeeEEEEEe-CCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCC----
Confidence            46899999999999986 66799999999999999999733 2478999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-ccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-RNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.+||+|||+++........ .....++..|+|||++....+
T Consensus       312 -----------------------------p~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  362 (454)
T 1qcf_A          312 -----------------------------AANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSF  362 (454)
T ss_dssp             -----------------------------GGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCC
T ss_pred             -----------------------------HHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCCC
Confidence                                         88999999999999999999765432211 222345678999999998899


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|||||||++|+|++ |..||.+.+.......+....  ....+..+++++.++|.+||+.||++|||++++++
T Consensus       363 ~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~--~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~  437 (454)
T 1qcf_A          363 TIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGY--RMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQS  437 (454)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTC--CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC--CCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHH
Confidence            999999999999999999 999998877666554443332  22346678999999999999999999999999974

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=2.5e-39  Score=269.67  Aligned_cols=199  Identities=22%  Similarity=0.411  Sum_probs=169.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      ++++||||+++++++.++...++||||+.+++|.+++... ...+++..+..++.|++.||.|||++|++|||||     
T Consensus        64 ~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dik-----  138 (288)
T 3kfa_A           64 KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA-----  138 (288)
T ss_dssp             HHCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCS-----
T ss_pred             HhCCCCCEeeEEEEEccCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCC-----
Confidence            4689999999999999999999999999999999999753 3569999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-ccccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-AKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++|+|||.+....... .......+++.|+|||.+.+..++
T Consensus       139 ----------------------------p~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  190 (288)
T 3kfa_A          139 ----------------------------ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFS  190 (288)
T ss_dssp             ----------------------------GGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCC
T ss_pred             ----------------------------cceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCChhhhccCCCC
Confidence                                        889999888999999999997654332 222334567789999999988999


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++||||+|+++|+|++ |..||.+.+.......+.....  ...+..+++++.+++.+||..||++|||++|+++.
T Consensus       191 ~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~  265 (288)
T 3kfa_A          191 IKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYR--MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQA  265 (288)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCC--CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccCC--CCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHH
Confidence            99999999999999999 9999987766655544443322  23456789999999999999999999999999753

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=4.2e-39  Score=271.62  Aligned_cols=200  Identities=25%  Similarity=0.331  Sum_probs=157.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++..+...|+||||+++++|.+++.. ...+++..+..++.|++.||.|||++|++|||||     
T Consensus        88 l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~-~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlk-----  161 (309)
T 2h34_A           88 AGRLQEPHVVPIHDFGEIDGQLYVDMRLINGVDLAAMLRR-QGPLAPPRAVAIVRQIGSALDAAHAAGATHRDVK-----  161 (309)
T ss_dssp             HTTCCCTTBCCEEEEEEETTEEEEEEECCCCEEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HhhcCCCCeeEEEEEEeeCCeEEEEEEecCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCC-----
Confidence            4678999999999999999999999999999999999974 4679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc-ccccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM-AKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++|+|||++....... .......+++.|+|||.+.+..++
T Consensus       162 ----------------------------p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  213 (309)
T 2h34_A          162 ----------------------------PENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHAT  213 (309)
T ss_dssp             ----------------------------GGGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC----
T ss_pred             ----------------------------hHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCC
Confidence                                        889999999999999999987654322 122344678899999999988899


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-CHHHHhc
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-TASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-s~~evl~  234 (251)
                      .++||||||+++|+|++|..||.+.........+..........+..+++++.++|.+||+.||++|| |++++++
T Consensus       214 ~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~  289 (309)
T 2h34_A          214 YRADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQAIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSA  289 (309)
T ss_dssp             CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHHHSCCCCGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHH
T ss_pred             chHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHhccCCCCccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHH
Confidence            99999999999999999999997765543333333322222234567899999999999999999999 7888874

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=5.6e-40  Score=285.03  Aligned_cols=232  Identities=25%  Similarity=0.291  Sum_probs=158.6

Q ss_pred             CCCccceeeeeEe----eCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCCCC
Q psy3253           5 DSPYVVKYYGSYF----KNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLR-RKIHRDIKAGS   78 (251)
Q Consensus         5 ~hpniv~l~~~~~----~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~-~iiH~dik~~N   78 (251)
                      +||||++++++|.    +..+.|+||||+ +++|.+++... ...+++..++.++.||+.||.|||++ ||+||||||+|
T Consensus        99 ~~~~iv~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~N  177 (397)
T 1wak_A           99 NREMVVQLLDDFKISGVNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPEN  177 (397)
T ss_dssp             GGGGBCCEEEEEEEEETTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGG
T ss_pred             CcceeeeeecceeecCCCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHH
Confidence            4899999999997    556899999999 55776666533 36799999999999999999999998 99999999999


Q ss_pred             CCcccccccc----------cccccc------ccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccc
Q psy3253          79 GTLVYDRLDY----------CSIKCN------VITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVI  142 (251)
Q Consensus        79 i~~~~~~~~~----------~~~~~~------~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~  142 (251)
                      ||+..+....          ......      ..............+....-.....++|+|||++......   .....
T Consensus       178 Ill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~---~~~~~  254 (397)
T 1wak_A          178 ILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH---FTEDI  254 (397)
T ss_dssp             EEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC---SCSCC
T ss_pred             eeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc---CccCC
Confidence            9987432100          000000      0000000000000011111122347999999999765432   23346


Q ss_pred             cccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh---------hhhcCCCCC---------------
Q psy3253         143 GTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA---------IFMIPTKPP---------------  198 (251)
Q Consensus       143 ~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~---------~~~~~~~~~---------------  198 (251)
                      +|+.|+|||++.+..++.++|||||||++|+|++|..||...+....         ........+               
T Consensus       255 gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  334 (397)
T 1wak_A          255 QTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFT  334 (397)
T ss_dssp             SCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBC
T ss_pred             CCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccC
Confidence            79999999999998999999999999999999999999965432110         000000000               


Q ss_pred             -----CC----------------CCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         199 -----PS----------------FREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       199 -----~~----------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                           ..                ...+...++++.+||.+||+.||++|||++|+|+||||+.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~  397 (397)
T 1wak_A          335 KKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS  397 (397)
T ss_dssp             TTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTSGGGGC
T ss_pred             CccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhCccccC
Confidence                 00                0011223467889999999999999999999999999973

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1.1e-39  Score=272.95  Aligned_cols=199  Identities=25%  Similarity=0.445  Sum_probs=159.2

Q ss_pred             CCCCCCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++..  ....++||||+++|+|.+++......+++..+..++.|++.||.|||++|++|||||   
T Consensus        65 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dik---  141 (295)
T 3ugc_A           65 LKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLA---  141 (295)
T ss_dssp             HHTCCCTTBCCEEEEECHHHHTSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS---
T ss_pred             HHhCCCCCEeeEEEEEecCCCCceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCC---
Confidence            357899999999999864  356899999999999999998666679999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---ccccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~  155 (251)
                                                    |+||+++.++.++|+|||++........   ......++..|+|||.+.+
T Consensus       142 ------------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  191 (295)
T 3ugc_A          142 ------------------------------TRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTE  191 (295)
T ss_dssp             ------------------------------GGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHH
T ss_pred             ------------------------------HhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcC
Confidence                                          8899999999999999999976543221   1222345677999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc----------------hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhh
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPM----------------RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCL  219 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  219 (251)
                      ..++.++||||+|+++|++++|..|+......                .....+...  .....+..+++++.+++.+||
T Consensus       192 ~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~~l  269 (295)
T 3ugc_A          192 SKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNN--GRLPRPDGCPDEIYMIMTECW  269 (295)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTT--CCCCCCTTCCHHHHHHHHHHS
T ss_pred             CCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhcc--CcCCCCcCcCHHHHHHHHHHc
Confidence            99999999999999999999999988543211                011111111  123346778999999999999


Q ss_pred             hcCcCccCCHHHHhc
Q psy3253         220 VKNPEERATASEMLN  234 (251)
Q Consensus       220 ~~~p~~Rps~~evl~  234 (251)
                      +.||++|||++|+++
T Consensus       270 ~~dp~~Rps~~el~~  284 (295)
T 3ugc_A          270 NNNVNQRPSFRDLAL  284 (295)
T ss_dssp             CSSGGGSCCHHHHHH
T ss_pred             CCChhhCCCHHHHHH
Confidence            999999999999985

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=100.00  E-value=1.4e-39  Score=274.10  Aligned_cols=199  Identities=24%  Similarity=0.439  Sum_probs=165.3

Q ss_pred             CC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCC-----------------CCCHHHHHHHHHHHHHHHHHH
Q psy3253           3 QC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK-----------------TLSEDEIATILCDTLKGLEYL   64 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~-----------------~l~~~~~~~~~~~i~~~l~~L   64 (251)
                      ++ +||||+++++++.++...++||||+++|+|.+++.....                 .+++..++.++.|++.||.||
T Consensus        82 ~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l  161 (313)
T 1t46_A           82 YLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFL  161 (313)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCCCeeeEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence            45 899999999999999999999999999999999975432                 489999999999999999999


Q ss_pred             HhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccc
Q psy3253          65 HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVI  142 (251)
Q Consensus        65 H~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~  142 (251)
                      |++|++|||||                                 |+||+++.++.++|+|||++........  ......
T Consensus       162 H~~~i~H~dlk---------------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~  208 (313)
T 1t46_A          162 ASKNCIHRDLA---------------------------------ARNILLTHGRITKICDFGLARDIKNDSNYVVKGNAR  208 (313)
T ss_dssp             HHTTCCCSCCS---------------------------------GGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSE
T ss_pred             HHCCeecCCCc---------------------------------cceEEEcCCCCEEEccccccccccccccceeccCCC
Confidence            99999999988                                 8899999999999999999976543322  123345


Q ss_pred             cccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhc
Q psy3253         143 GTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVK  221 (251)
Q Consensus       143 ~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  221 (251)
                      +++.|+|||.+.+..++.++||||||+++|+|++ |..||.+.............. .....+..+++++.+++.+||+.
T Consensus       209 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~  287 (313)
T 1t46_A          209 LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEG-FRMLSPEHAPAEMYDIMKTCWDA  287 (313)
T ss_dssp             ECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHT-CCCCCCTTSCHHHHHHHHHHTCS
T ss_pred             CcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHhccC-CCCCCcccCCHHHHHHHHHHcCC
Confidence            6778999999988899999999999999999998 999997665433322221111 11223566899999999999999


Q ss_pred             CcCccCCHHHHhcC
Q psy3253         222 NPEERATASEMLNH  235 (251)
Q Consensus       222 ~p~~Rps~~evl~h  235 (251)
                      ||++|||++|++++
T Consensus       288 dp~~Rps~~ell~~  301 (313)
T 1t46_A          288 DPLKRPTFKQIVQL  301 (313)
T ss_dssp             SGGGSCCHHHHHHH
T ss_pred             CchhCcCHHHHHHH
Confidence            99999999999964

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=4.2e-39  Score=272.93  Aligned_cols=194  Identities=26%  Similarity=0.378  Sum_probs=164.5

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGA-GSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~-gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .||||+++++++.++...++|||++.+ ++|.+++.. ...+++..++.++.||+.||.|||++|++|||||        
T Consensus       106 ~~~~i~~~~~~~~~~~~~~lv~e~~~~~~~L~~~l~~-~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlk--------  176 (320)
T 3a99_A          106 GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITE-RGALQEELARSFFWQVLEAVRHCHNCGVLHRDIK--------  176 (320)
T ss_dssp             SSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS--------
T ss_pred             CCCCceEEEEEEecCCcEEEEEEcCCCCccHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCC--------
Confidence            479999999999999999999999975 899999974 5689999999999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecC-CCCCeEecccccccccCcccccccccccccccccccccccCCC-Ccc
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY-DCV  161 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~-~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~  161 (251)
                                               |+||+++ .++.+||+|||++......  ......+|+.|+|||++.+..+ +.+
T Consensus       177 -------------------------p~NIll~~~~~~~kL~Dfg~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~  229 (320)
T 3a99_A          177 -------------------------DENILIDLNRGELKLIDFGSGALLKDT--VYTDFDGTRVYSPPEWIRYHRYHGRS  229 (320)
T ss_dssp             -------------------------GGGEEEETTTTEEEECCCTTCEECCSS--CBCCCCSCGGGSCHHHHHHSCBCHHH
T ss_pred             -------------------------HHHEEEeCCCCCEEEeeCccccccccc--cccCCCCCccCCChHHhccCCCCCcc
Confidence                                     8888888 6788999999999765433  2233468899999999977665 678


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +|||||||++|+|++|..||......  ..   .    ....+..+++++.++|.+||+.||++|||++|+++||||+..
T Consensus       230 ~Di~slG~il~el~~g~~pf~~~~~~--~~---~----~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~hp~~~~~  300 (320)
T 3a99_A          230 AAVWSLGILLYDMVCGDIPFEHDEEI--IR---G----QVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDV  300 (320)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCCSHHHH--HH---C----CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSC
T ss_pred             chHHhHHHHHHHHHHCCCCCCChhhh--hc---c----cccccccCCHHHHHHHHHHccCChhhCcCHHHHhcCHhhcCc
Confidence            99999999999999999999654321  11   1    112345679999999999999999999999999999999876


Q ss_pred             cC
Q psy3253         242 DT  243 (251)
Q Consensus       242 ~~  243 (251)
                      ..
T Consensus       301 ~~  302 (320)
T 3a99_A          301 LL  302 (320)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=100.00  E-value=7.2e-39  Score=264.17  Aligned_cols=195  Identities=16%  Similarity=0.336  Sum_probs=162.2

Q ss_pred             CCCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKK-TLSEDEIATILCDTLKGLEYLHLRR--KIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~-~l~~~~~~~~~~~i~~~l~~LH~~~--iiH~dik   75 (251)
                      |++++||||+++++++.+.  ...++||||+++|+|.+++..... .+++..+..++.|++.||.|||++|  ++|||||
T Consensus        61 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dik  140 (271)
T 3kmu_A           61 LRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALN  140 (271)
T ss_dssp             GCCCSCTTEECEEEEECTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCS
T ss_pred             HHhcCCCchhheEEEEccCCCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCc
Confidence            4678999999999999876  788999999999999999974332 5899999999999999999999999  9999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.++++|||++.....     ....+|+.|+|||.+.+
T Consensus       141 ---------------------------------p~Nil~~~~~~~~l~~~~~~~~~~~-----~~~~~t~~y~aPE~~~~  182 (271)
T 3kmu_A          141 ---------------------------------SRSVMIDEDMTARISMADVKFSFQS-----PGRMYAPAWVAPEALQK  182 (271)
T ss_dssp             ---------------------------------GGGEEECTTSCEEEEGGGSCCTTSC-----TTCBSCGGGSCHHHHHS
T ss_pred             ---------------------------------cceEEEcCCcceeEEeccceeeecc-----cCccCCccccChhhhcc
Confidence                                             8899999999999998887754322     23467889999999976


Q ss_pred             CCCCc---chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         156 IGYDC---VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       156 ~~~~~---~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      ..++.   ++||||+||++|++++|..||.+.........+.... .....+..+++++.+++.+||+.||++|||++|+
T Consensus       183 ~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~i  261 (271)
T 3kmu_A          183 KPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEG-LRPTIPPGISPHVSKLMKICMNEDPAKRPKFDMI  261 (271)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSC-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence            55444   7999999999999999999998776655443332221 1223356789999999999999999999999999


Q ss_pred             hc
Q psy3253         233 LN  234 (251)
Q Consensus       233 l~  234 (251)
                      ++
T Consensus       262 l~  263 (271)
T 3kmu_A          262 VP  263 (271)
T ss_dssp             HH
T ss_pred             HH
Confidence            84

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.6e-39  Score=272.82  Aligned_cols=197  Identities=27%  Similarity=0.439  Sum_probs=159.4

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEc-cCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcc
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEY-CGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV   82 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~-~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~   82 (251)
                      ++||||+++++++.+....++|||+ +.+++|.+++.. ...+++..++.++.||+.||.|||++|++|||||       
T Consensus        95 ~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~~L~~~l~~-~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlk-------  166 (312)
T 2iwi_A           95 GGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITE-KGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIK-------  166 (312)
T ss_dssp             CCCSSBCCEEEEC-----CEEEEECCSSEEEHHHHHHH-HCSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCS-------
T ss_pred             CCCCCeeeEEEEEecCCeEEEEEEecCCCCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCC-------
Confidence            3899999999999999999999999 788999999974 4679999999999999999999999999999988       


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecC-CCCCeEecccccccccCcccccccccccccccccccccccCCCC-c
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD-C  160 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~-~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~-~  160 (251)
                                                |+||+++ .++.++|+|||++......  ......++..|+|||++.+..+. .
T Consensus       167 --------------------------p~Nil~~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~  218 (312)
T 2iwi_A          167 --------------------------DENILIDLRRGCAKLIDFGSGALLHDE--PYTDFDGTRVYSPPEWISRHQYHAL  218 (312)
T ss_dssp             --------------------------GGGEEEETTTTEEEECCCSSCEECCSS--CBCCCCSCTTTSCHHHHHHSCBCHH
T ss_pred             --------------------------hhhEEEeCCCCeEEEEEcchhhhcccC--cccccCCcccccCceeeecCCCCCc
Confidence                                      8889988 7888999999999765533  22344578899999999776664 4


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++||||+||++|++++|..||......  ..    .   ....+..+++++.++|.+||+.||++|||++|+++||||+.
T Consensus       219 ~~Di~slG~il~~l~~g~~pf~~~~~~--~~----~---~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~~~~  289 (312)
T 2iwi_A          219 PATVWSLGILLYDMVCGDIPFERDQEI--LE----A---ELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQT  289 (312)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCSHHHH--HH----T---CCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHSTTTCC
T ss_pred             cchHHHHHHHHHHHHHCCCCCCChHHH--hh----h---ccCCcccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhcC
Confidence            899999999999999999999654221  11    1   11234568999999999999999999999999999999987


Q ss_pred             ccCCC
Q psy3253         241 HDTDP  245 (251)
Q Consensus       241 ~~~~~  245 (251)
                      ...+.
T Consensus       290 ~~~~~  294 (312)
T 2iwi_A          290 PAEDV  294 (312)
T ss_dssp             -----
T ss_pred             chhcc
Confidence            65544

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=100.00  E-value=4.1e-39  Score=294.99  Aligned_cols=203  Identities=26%  Similarity=0.463  Sum_probs=168.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++.. ...++||||+.+|+|.+++......+++..+..++.||+.||.|||++||+|||||     
T Consensus       390 l~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlk-----  463 (613)
T 2ozo_A          390 MHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLA-----  463 (613)
T ss_dssp             HTTCCCTTBCCEEEEEES-SSEEEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----
T ss_pred             HHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCC-----
Confidence            468899999999999976 56999999999999999997566779999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---cccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.+||+|||+++.......   ......+++.|+|||++.+..
T Consensus       464 ----------------------------p~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~  515 (613)
T 2ozo_A          464 ----------------------------ARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRK  515 (613)
T ss_dssp             ----------------------------GGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCC
T ss_pred             ----------------------------HHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCC
Confidence                                        8899999999999999999976543211   112223467899999999889


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh---
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML---  233 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl---  233 (251)
                      ++.++|||||||++|+|++ |..||.+.+.......+..+..  ...+..+++++.++|.+||+.||++|||+++++   
T Consensus       516 ~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~--~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L  593 (613)
T 2ozo_A          516 FSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKR--MECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM  593 (613)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCC--CCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCC--CCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHH
Confidence            9999999999999999998 9999988777666655544432  334667899999999999999999999999984   


Q ss_pred             cChhhh
Q psy3253         234 NHEFIQ  239 (251)
Q Consensus       234 ~hp~~~  239 (251)
                      ++.|+.
T Consensus       594 ~~~~~~  599 (613)
T 2ozo_A          594 RACYYS  599 (613)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444444

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=100.00  E-value=9.6e-39  Score=266.16  Aligned_cols=195  Identities=26%  Similarity=0.452  Sum_probs=160.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR--KIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~--iiH~dik~~N   78 (251)
                      |++++||||+++++++.+..  ++||||+.+|+|.+++......+++..++.++.|++.||.|||++|  ++|||||   
T Consensus        77 l~~l~h~~i~~~~~~~~~~~--~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dik---  151 (287)
T 4f0f_A           77 MSNLNHPNIVKLYGLMHNPP--RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLR---  151 (287)
T ss_dssp             HTTCCCTTBCCEEEEETTTT--EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCS---
T ss_pred             HHhCCCCCchhhheeecCCC--eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCC---
Confidence            46789999999999997665  7999999999999999766678999999999999999999999999  9999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCC-----eEecccccccccCccccccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH-----AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~-----~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  153 (251)
                                                    |+||+++.++.     ++|+|||++.....   ......+++.|+|||++
T Consensus       152 ------------------------------p~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~---~~~~~~g~~~y~aPE~~  198 (287)
T 4f0f_A          152 ------------------------------SPNIFLQSLDENAPVCAKVADFGLSQQSVH---SVSGLLGNFQWMAPETI  198 (287)
T ss_dssp             ------------------------------GGGEEESCCCTTCSCCEEECCCTTCBCCSS---CEECCCCCCTTSCGGGS
T ss_pred             ------------------------------cceEEEeccCCCCceeEEeCCCCccccccc---cccccCCCccccCchhh
Confidence                                          77888876665     99999999975443   23345689999999998


Q ss_pred             --ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh--hhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         154 --QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA--IFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       154 --~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                        ....++.++||||+||++|+|++|..||........  ...+.. .......+..+++++.+++.+||+.||++|||+
T Consensus       199 ~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~  277 (287)
T 4f0f_A          199 GAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIRE-EGLRPTIPEDCPPRLRNVIELCWSGDPKKRPHF  277 (287)
T ss_dssp             SCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHH-SCCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             ccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhc-cCCCCCCCcccCHHHHHHHHHHhcCChhhCcCH
Confidence              445678899999999999999999999976544332  111111 111223456789999999999999999999999


Q ss_pred             HHHhc
Q psy3253         230 SEMLN  234 (251)
Q Consensus       230 ~evl~  234 (251)
                      +|+++
T Consensus       278 ~~ll~  282 (287)
T 4f0f_A          278 SYIVK  282 (287)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99985

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=100.00  E-value=4.8e-39  Score=268.76  Aligned_cols=196  Identities=25%  Similarity=0.434  Sum_probs=165.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++ .....++||||+.+++|.+++. ....+++..+..++.|++.||.|||++|++|||||      
T Consensus        73 ~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~-~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dik------  144 (291)
T 1xbb_A           73 QQLDNPYIVRMIGIC-EAESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLA------  144 (291)
T ss_dssp             HTCCCTTBCCEEEEE-ESSSEEEEEECCTTEEHHHHHH-HCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS------
T ss_pred             HhCCCCCEEEEEEEE-CCCCcEEEEEeCCCCCHHHHHH-hCcCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCC------
Confidence            578999999999999 6677899999999999999997 45679999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc---ccccccccccccccccccCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                 |+||+++.++.++|+|||++.........   .....+++.|+|||.+.+..+
T Consensus       145 ---------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  197 (291)
T 1xbb_A          145 ---------------------------ARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKF  197 (291)
T ss_dssp             ---------------------------GGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEE
T ss_pred             ---------------------------cceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCC
Confidence                                       88999988999999999999765432211   122235678999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++||||||+++|+|++ |..||.+.........+......  ..+..+++++.+++.+||+.||++|||++|+++
T Consensus       198 ~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  272 (291)
T 1xbb_A          198 SSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERM--GCPAGCPREMYDLMNLCWTYDVENRPGFAAVEL  272 (291)
T ss_dssp             EHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             ChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            999999999999999999 99999877666555544443322  235678999999999999999999999999985

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=3.1e-39  Score=273.90  Aligned_cols=204  Identities=25%  Similarity=0.315  Sum_probs=161.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHhC---CccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---KTLSEDEIATILCDTLKGLEYLHLR---RKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---~~l~~~~~~~~~~~i~~~l~~LH~~---~iiH~di   74 (251)
                      |++++||||+++++++.+....++||||+.+|+|.+++....   ..+++..+..++.|++.||.|||++   |++||||
T Consensus        81 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dl  160 (326)
T 3uim_A           81 ISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDV  160 (326)
T ss_dssp             GGTCCCTTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCC
T ss_pred             HHhccCCCccceEEEEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCC
Confidence            457899999999999999999999999999999999997432   3499999999999999999999999   9999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-ccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~  153 (251)
                      |                                 |+||+++.++.++|+|||++........ ......||+.|+|||++
T Consensus       161 k---------------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~  207 (326)
T 3uim_A          161 K---------------------------------AANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYL  207 (326)
T ss_dssp             S---------------------------------GGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHH
T ss_pred             c---------------------------------hhhEEECCCCCEEeccCccccccCcccccccccccCCcCccCHHHh
Confidence            8                                 8899999999999999999976543222 22334589999999999


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhCCCCCCCC-----Ccchhhhhc---CCCCC--------CCCCCCCCCCHHHHHHHHH
Q psy3253         154 QEIGYDCVADMWSLGITALEMAEGKPPYGDI-----HPMRAIFMI---PTKPP--------PSFREPDVWTPEFIDFVSR  217 (251)
Q Consensus       154 ~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~-----~~~~~~~~~---~~~~~--------~~~~~~~~~~~~~~~li~~  217 (251)
                      .+..++.++||||+||++|+|++|..||...     ........+   .....        .....+...+..+.+++.+
T Consensus       208 ~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~  287 (326)
T 3uim_A          208 STGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALL  287 (326)
T ss_dssp             HHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHH
T ss_pred             ccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccccCHHHHHHHHHHHHH
Confidence            8888999999999999999999999999421     111111000   00000        0001112224678999999


Q ss_pred             hhhcCcCccCCHHHHhcChh
Q psy3253         218 CLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       218 ~l~~~p~~Rps~~evl~hp~  237 (251)
                      ||+.||++|||++|+++|-.
T Consensus       288 cl~~dP~~Rps~~ell~~L~  307 (326)
T 3uim_A          288 CTQSSPMERPKMSEVVRMLE  307 (326)
T ss_dssp             HTCSCGGGSCCHHHHHHHHH
T ss_pred             HhCcCCccCCCHHHHHHHhc
Confidence            99999999999999998754

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=100.00  E-value=8.2e-39  Score=269.87  Aligned_cols=199  Identities=21%  Similarity=0.384  Sum_probs=160.5

Q ss_pred             CCCCCCccceeeeeEeeCC-----eEEEEEEccCCCCHHHHHHH-----hCCCCCHHHHHHHHHHHHHHHHHHHhCCccc
Q psy3253           2 QQCDSPYVVKYYGSYFKNT-----DLWIVMEYCGAGSVSDIMRL-----RKKTLSEDEIATILCDTLKGLEYLHLRRKIH   71 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~-----~~~lv~e~~~~gsL~~~~~~-----~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH   71 (251)
                      ++++||||+++++++.+..     ..++||||+.+|+|.+++..     ....+++..++.++.|++.||.|||++|++|
T Consensus        91 ~~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH  170 (313)
T 3brb_A           91 KDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLH  170 (313)
T ss_dssp             HTCCCTTBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             hcCCCCCeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            5789999999999997654     45999999999999999853     2356999999999999999999999999999


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMA  149 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~a  149 (251)
                      ||||                                 |+||+++.++.++|+|||++........  ......+++.|+|
T Consensus       171 ~dik---------------------------------p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a  217 (313)
T 3brb_A          171 RDLA---------------------------------ARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIA  217 (313)
T ss_dssp             CCCS---------------------------------GGGEEECTTSCEEECSCSCC----------------CCGGGSC
T ss_pred             CCCC---------------------------------cceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccC
Confidence            9988                                 8899999999999999999976543211  1223346778999


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC
Q psy3253         150 PEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT  228 (251)
Q Consensus       150 PE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  228 (251)
                      ||.+.+..++.++||||||+++|+|++ |..||.+.........+......  ..+..+++++.+++.+||..||++|||
T Consensus       218 PE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps  295 (313)
T 3brb_A          218 IESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGHRL--KQPEDCLDELYEIMYSCWRTDPLDRPT  295 (313)
T ss_dssp             HHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCC--CCBTTCCHHHHHHHHHTTCSSGGGSCC
T ss_pred             chhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCCCC--CCCccccHHHHHHHHHHcCCChhhCcC
Confidence            999999899999999999999999999 89999877666555444443322  235678999999999999999999999


Q ss_pred             HHHHhcC
Q psy3253         229 ASEMLNH  235 (251)
Q Consensus       229 ~~evl~h  235 (251)
                      ++|++++
T Consensus       296 ~~~l~~~  302 (313)
T 3brb_A          296 FSVLRLQ  302 (313)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999865

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=100.00  E-value=3.5e-39  Score=269.43  Aligned_cols=200  Identities=25%  Similarity=0.489  Sum_probs=153.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||++++++. .....++||||+.+++|.+++......+++..+..++.|++.||.|||++|++|||||     
T Consensus        74 l~~l~h~~iv~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlk-----  147 (289)
T 3og7_A           74 LRKTRHVNILLFMGYS-TAPQLAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLK-----  147 (289)
T ss_dssp             HTTCCCTTBCCEEEEE-CSSSCEEEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HHhCCCCcEEEEEeec-cCCccEEEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCc-----
Confidence            4688999999999965 5567899999999999999997666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc--cccccccccccccccccccc---c
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT--MAKRNTVIGTPFWMAPEVIQ---E  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~~~y~aPE~~~---~  155 (251)
                                                  |+||+++.++.++|+|||++......  ........+|+.|+|||++.   +
T Consensus       148 ----------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  199 (289)
T 3og7_A          148 ----------------------------SNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDS  199 (289)
T ss_dssp             ----------------------------GGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----
T ss_pred             ----------------------------cceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCC
Confidence                                        88999999999999999999754421  11223346799999999986   5


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC-CC--CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP-TK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      ..++.++||||+|+++|++++|..||.+........... ..  ..........+++++.+++.+||+.||++|||++|+
T Consensus       200 ~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~el  279 (289)
T 3og7_A          200 NPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRI  279 (289)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhccccCCHHHHHHHHHHccCChhhCCCHHHH
Confidence            678889999999999999999999997655443332211 11  111112245689999999999999999999999999


Q ss_pred             hc
Q psy3253         233 LN  234 (251)
Q Consensus       233 l~  234 (251)
                      ++
T Consensus       280 l~  281 (289)
T 3og7_A          280 LA  281 (289)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=100.00  E-value=3.5e-39  Score=274.80  Aligned_cols=198  Identities=24%  Similarity=0.468  Sum_probs=166.6

Q ss_pred             CC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHHh
Q psy3253           3 QC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLHL   66 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH~   66 (251)
                      ++ +||||+++++++.+....++||||+.+|+|.+++....               ..+++..++.++.||+.||.|||+
T Consensus        96 ~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~  175 (334)
T 2pvf_A           96 MIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLAS  175 (334)
T ss_dssp             HHCCCTTBCCEEEEECSSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcCCCEeeEEEEEccCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHh
Confidence            45 89999999999999999999999999999999997433               248999999999999999999999


Q ss_pred             CCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccc
Q psy3253          67 RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGT  144 (251)
Q Consensus        67 ~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~  144 (251)
                      +|++|||||                                 |+||+++.++.+||+|||++........  ......++
T Consensus       176 ~~ivH~Dlk---------------------------------p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~  222 (334)
T 2pvf_A          176 QKCIHRDLA---------------------------------ARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLP  222 (334)
T ss_dssp             TTEECSCCS---------------------------------GGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCC
T ss_pred             CCeeCCCCc---------------------------------cceEEEcCCCCEEEccccccccccccccccccCCCCcc
Confidence            999999988                                 8899999999999999999976543221  12233457


Q ss_pred             cccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCc
Q psy3253         145 PFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP  223 (251)
Q Consensus       145 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  223 (251)
                      +.|+|||++.+..++.++||||||+++|+|++ |..||.+.........+.....  ...+..+++++.+++.+||+.||
T Consensus       223 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~dp  300 (334)
T 2pvf_A          223 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHR--MDKPANCTNELYMMMRDCWHAVP  300 (334)
T ss_dssp             GGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCC--CCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             cceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHHHhcCCC--CCCCccCCHHHHHHHHHHccCCh
Confidence            78999999988889999999999999999999 9999987766555444333322  22356789999999999999999


Q ss_pred             CccCCHHHHhcC
Q psy3253         224 EERATASEMLNH  235 (251)
Q Consensus       224 ~~Rps~~evl~h  235 (251)
                      ++|||++|++++
T Consensus       301 ~~Rps~~ell~~  312 (334)
T 2pvf_A          301 SQRPTFKQLVED  312 (334)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hhCcCHHHHHHH
Confidence            999999999875

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=100.00  E-value=3.9e-39  Score=270.24  Aligned_cols=199  Identities=21%  Similarity=0.412  Sum_probs=163.4

Q ss_pred             CCCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++...  ...++||||+++|+|.+++......+++..+..++.|++.||.|||++|++|||||   
T Consensus        77 l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dik---  153 (302)
T 4e5w_A           77 LRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLA---  153 (302)
T ss_dssp             HHTCCCTTBCCEEEEEEC---CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS---
T ss_pred             HHhCCCCCeeeeeeEEecCCCceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCc---
Confidence            3578999999999999866  67899999999999999997777889999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc---cccccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM---AKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                    |+||+++.++.++|+|||++.......   .......+|..|+|||.+.+
T Consensus       154 ------------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  203 (302)
T 4e5w_A          154 ------------------------------ARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQ  203 (302)
T ss_dssp             ------------------------------GGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHH
T ss_pred             ------------------------------hheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecC
Confidence                                          889999889999999999997654332   12334457778999999998


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCC---------------cchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhh
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIH---------------PMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLV  220 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  220 (251)
                      ..++.++||||+|+++|+|++|..|+....               .......+....  ....+..+++++.+++.+||+
T Consensus       204 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~  281 (302)
T 4e5w_A          204 SKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGK--RLPCPPNCPDEVYQLMRKCWE  281 (302)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTC--CCCCCTTCCHHHHHHHHHTTC
T ss_pred             CCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccC--CCCCCCCCCHHHHHHHHHHcC
Confidence            889999999999999999999998763211               011111112221  233466789999999999999


Q ss_pred             cCcCccCCHHHHhc
Q psy3253         221 KNPEERATASEMLN  234 (251)
Q Consensus       221 ~~p~~Rps~~evl~  234 (251)
                      .||++|||++|+++
T Consensus       282 ~dp~~Rps~~~ll~  295 (302)
T 4e5w_A          282 FQPSNRTSFQNLIE  295 (302)
T ss_dssp             SSGGGSCCHHHHHH
T ss_pred             CCCCCCCCHHHHHH
Confidence            99999999999984

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=5.6e-39  Score=274.64  Aligned_cols=222  Identities=19%  Similarity=0.279  Sum_probs=162.9

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .+++++.+++++....+.|+||||+ +++|.+++.... ..+++..++.++.||+.||.|||++|++||||||+|||+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~  158 (355)
T 2eu9_A           80 NKFLCVLMSDWFNFHGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVN  158 (355)
T ss_dssp             SCSCBCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESC
T ss_pred             CceeEEEeeeeeeeCCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEec
Confidence            3455999999999999999999999 567777776443 57999999999999999999999999999999966666642


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchh
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVAD  163 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  163 (251)
                      .........              .....-..+.++.++|+|||++......   .....+|+.|+|||++.+..++.++|
T Consensus       159 ~~~~~~~~~--------------~~~~~~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~D  221 (355)
T 2eu9_A          159 SEFETLYNE--------------HKSCEEKSVKNTSIRVADFGSATFDHEH---HTTIVATRHYRPPEVILELGWAQPCD  221 (355)
T ss_dssp             CCEEEEECC--------------C-CCCEEEESCCCEEECCCTTCEETTSC---CCSSCSCGGGCCHHHHTTCCCCTHHH
T ss_pred             ccccccccc--------------cccccccccCCCcEEEeecCcccccccc---ccCCcCCCcccCCeeeecCCCCCccc
Confidence            110000000              0000111256778999999999754322   23456899999999999989999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCCCCcchhhhhc---CCCCCC--------------------------------------CCC
Q psy3253         164 MWSLGITALEMAEGKPPYGDIHPMRAIFMI---PTKPPP--------------------------------------SFR  202 (251)
Q Consensus       164 vwslG~~l~~l~~g~~p~~~~~~~~~~~~~---~~~~~~--------------------------------------~~~  202 (251)
                      ||||||++|+|++|..||...+.......+   ....+.                                      ...
T Consensus       222 i~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (355)
T 2eu9_A          222 VWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYML  301 (355)
T ss_dssp             HHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCS
T ss_pred             hHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCccccccc
Confidence            999999999999999999766543322111   000000                                      000


Q ss_pred             CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         203 EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       203 ~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      .....+.++.+||.+||+.||++|||++|+++||||+..+++
T Consensus       302 ~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~  343 (355)
T 2eu9_A          302 QDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGLTPE  343 (355)
T ss_dssp             CCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGCCHH
T ss_pred             ccchhHHHHHHHHHHHhcCChhhCcCHHHHhcChhhcCCChh
Confidence            011224578999999999999999999999999999987654

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=3.4e-39  Score=273.76  Aligned_cols=199  Identities=25%  Similarity=0.390  Sum_probs=155.9

Q ss_pred             CCCCCCCccceeeeeEeeCC----eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC---------
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR---------   67 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~----~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~---------   67 (251)
                      |++++||||+++++++....    .+++||||+++|+|.++++.  ..+++..++.++.|++.||.|||+.         
T Consensus        72 l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~  149 (322)
T 3soc_A           72 LPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKA--NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHK  149 (322)
T ss_dssp             STTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEE
T ss_pred             HhcCCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHhhccccccccC
Confidence            56889999999999998743    47999999999999999973  4699999999999999999999999         


Q ss_pred             -CccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccc
Q psy3253          68 -RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGT  144 (251)
Q Consensus        68 -~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~  144 (251)
                       |++|||||                                 |+||+++.++.+||+|||+++.......  ......+|
T Consensus       150 ~~ivH~Dlk---------------------------------p~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt  196 (322)
T 3soc_A          150 PAISHRDIK---------------------------------SKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGT  196 (322)
T ss_dssp             CEEECSCCS---------------------------------GGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCC
T ss_pred             CCEEeCCCC---------------------------------hHhEEECCCCeEEEccCCcccccccccCccccccCccC
Confidence             99999988                                 8899999999999999999976543222  22335689


Q ss_pred             ccccccccccc-----CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcch----------------hhhhcCC-CCCCCCC
Q psy3253         145 PFWMAPEVIQE-----IGYDCVADMWSLGITALEMAEGKPPYGDIHPMR----------------AIFMIPT-KPPPSFR  202 (251)
Q Consensus       145 ~~y~aPE~~~~-----~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~----------------~~~~~~~-~~~~~~~  202 (251)
                      +.|+|||++.+     ..++.++|||||||++|+|++|..||.+.....                ....+.. ...+...
T Consensus       197 ~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (322)
T 3soc_A          197 RRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLR  276 (322)
T ss_dssp             GGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCC
T ss_pred             ccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCcc
Confidence            99999999976     356678999999999999999999996532211                0001111 1111110


Q ss_pred             ---CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         203 ---EPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       203 ---~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                         .....++++.++|.+||+.||++|||++|+++
T Consensus       277 ~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~  311 (322)
T 3soc_A          277 DYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGE  311 (322)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHccCChhhCcCHHHHHH
Confidence               01112355999999999999999999999985

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=100.00  E-value=4.4e-39  Score=285.18  Aligned_cols=198  Identities=26%  Similarity=0.416  Sum_probs=162.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.+ ...++||||+.+|+|.++++.. ...+++..+..++.|++.||.|||++|++|||||    
T Consensus       233 l~~l~hp~iv~~~~~~~~-~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlk----  307 (452)
T 1fmk_A          233 MKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR----  307 (452)
T ss_dssp             HHHCCCTTBCCEEEEECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS----
T ss_pred             HHhCCCCCEeeEEEEEcC-CceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC----
Confidence            357899999999999866 6789999999999999999643 3569999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.+||+|||+++....... ......++..|+|||.+.+..+
T Consensus       308 -----------------------------p~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  358 (452)
T 1fmk_A          308 -----------------------------AANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRF  358 (452)
T ss_dssp             -----------------------------GGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCC
T ss_pred             -----------------------------hhhEEECCCCCEEECCCccceecCCCceecccCCcccccccCHhHHhcCCC
Confidence                                         8899999899999999999976543211 1223345678999999998899


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|||||||++|+|++ |..||.+.........+....  ....+..+++.+.++|.+||+.||++|||++++++
T Consensus       359 ~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~--~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~  433 (452)
T 1fmk_A          359 TIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGY--RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQA  433 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTC--CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC--CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence            999999999999999999 999998877666555544432  22345678999999999999999999999999985

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=2.6e-39  Score=274.10  Aligned_cols=204  Identities=23%  Similarity=0.334  Sum_probs=162.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      |++++||||+++++++.+....++||||+++|+|.+++....   ..+++..++.++.|++.||.|||++|++|||||  
T Consensus        89 l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlk--  166 (321)
T 2qkw_B           89 LSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVK--  166 (321)
T ss_dssp             GGSCCCTTBCCEEEECCCTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC--
T ss_pred             HHhCCCCCEeeEEEEEcCCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCC--
Confidence            467899999999999999999999999999999999885332   358999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--cccccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                     |+||+++.++.+||+|||++.......  .......||+.|+|||++.+
T Consensus       167 -------------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  215 (321)
T 2qkw_B          167 -------------------------------SINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIK  215 (321)
T ss_dssp             -------------------------------STTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHH
T ss_pred             -------------------------------HHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHhcC
Confidence                                           889999999999999999997543221  12233457899999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhh------------cCCCCCCC--CCCCCCCCHHHHHHHHHhhhc
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFM------------IPTKPPPS--FREPDVWTPEFIDFVSRCLVK  221 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~------------~~~~~~~~--~~~~~~~~~~~~~li~~~l~~  221 (251)
                      ..++.++|||||||++|+|++|..||...........            +.....+.  .......+..+.+++.+||+.
T Consensus       216 ~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~  295 (321)
T 2qkw_B          216 GRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLAL  295 (321)
T ss_dssp             CBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCS
T ss_pred             CCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCC
Confidence            8999999999999999999999999965433221100            00000000  111223456789999999999


Q ss_pred             CcCccCCHHHHhcChh
Q psy3253         222 NPEERATASEMLNHEF  237 (251)
Q Consensus       222 ~p~~Rps~~evl~hp~  237 (251)
                      ||++|||++|++++..
T Consensus       296 dP~~Rps~~ell~~L~  311 (321)
T 2qkw_B          296 SSEDRPSMGDVLWKLE  311 (321)
T ss_dssp             SGGGSCCHHHHHHHHH
T ss_pred             CcccCcCHHHHHHHHH
Confidence            9999999999997753

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=100.00  E-value=1.7e-38  Score=267.65  Aligned_cols=200  Identities=30%  Similarity=0.560  Sum_probs=155.0

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      ++++||||+++++++.+....++||||+++++|.+++..   ....+++..+..++.|++.||.|||++|++|||||   
T Consensus        87 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~---  163 (310)
T 2wqm_A           87 KQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIK---  163 (310)
T ss_dssp             HTCCCTTBCCEEEEEEETTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC---
T ss_pred             HhCCCCCEeeEEEEEEcCCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCc---
Confidence            578999999999999999999999999999999999863   35679999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                    |+||+++.++.++|+|||++..............+++.|+|||.+.+..+
T Consensus       164 ------------------------------p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  213 (310)
T 2wqm_A          164 ------------------------------PANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGY  213 (310)
T ss_dssp             ------------------------------GGGEEECTTSCEEECCC------------------CCSSCCHHHHTTCCC
T ss_pred             ------------------------------HHHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCC
Confidence                                          88999999999999999999765543333344567899999999999899


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcc--hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPM--RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      +.++||||||+++|+|++|..||.+....  .....+.....+. .....+++++.+++.+||+.||++|||++|++++
T Consensus       214 ~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~  291 (310)
T 2wqm_A          214 NFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPP-LPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDV  291 (310)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSCC-CCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCCC-CcccccCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence            99999999999999999999999654321  2222222221111 1235679999999999999999999999999853

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=1e-39  Score=277.64  Aligned_cols=198  Identities=19%  Similarity=0.213  Sum_probs=160.5

Q ss_pred             CCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      +++ +||||+++++++.++...++||||+ +++|.+++......+++..++.++.|++.||.|||++|++|||||     
T Consensus        59 ~~l~~h~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlk-----  132 (330)
T 2izr_A           59 KQLGSGDGIPQVYYFGPCGKYNAMVLELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVK-----  132 (330)
T ss_dssp             HHHCSCTTSCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----
T ss_pred             HHhhCCCCCCEEEEEEecCCccEEEEEeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCC-----
Confidence            345 8999999999999999999999999 899999998667889999999999999999999999999999998     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCC-----eEecccccccccCccccc-------ccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH-----AKLADFGVAGQLTDTMAK-------RNTVIGTPFWM  148 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~-----~kl~dfg~~~~~~~~~~~-------~~~~~~~~~y~  148 (251)
                                                  |+||+++.++.     ++|+|||+++........       .....||+.|+
T Consensus       133 ----------------------------p~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~  184 (330)
T 2izr_A          133 ----------------------------PENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYM  184 (330)
T ss_dssp             ----------------------------GGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTC
T ss_pred             ----------------------------HHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCcccc
Confidence                                        77888877766     999999999865433221       23456899999


Q ss_pred             cccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhh---hhcCCCC--CCCCCCCCCCCHHHHHHHHHhhhcCc
Q psy3253         149 APEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAI---FMIPTKP--PPSFREPDVWTPEFIDFVSRCLVKNP  223 (251)
Q Consensus       149 aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p  223 (251)
                      |||++.+..++.++|||||||++|+|++|..||.+.......   ..+....  .+.......++ ++.+++.+||+.||
T Consensus       185 aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~~li~~~l~~~p  263 (330)
T 2izr_A          185 SINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDF  263 (330)
T ss_dssp             CHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTCH-HHHHHHHHHHHCCT
T ss_pred             ChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhccCh-HHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999765433221   1111000  00000122344 99999999999999


Q ss_pred             CccCCHHHHhc
Q psy3253         224 EERATASEMLN  234 (251)
Q Consensus       224 ~~Rps~~evl~  234 (251)
                      .+||+++++++
T Consensus       264 ~~RP~~~~l~~  274 (330)
T 2izr_A          264 FEKPDYDYLRK  274 (330)
T ss_dssp             TCCCCHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence            99999999865

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=100.00  E-value=2.4e-39  Score=275.33  Aligned_cols=198  Identities=24%  Similarity=0.443  Sum_probs=163.1

Q ss_pred             CC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-------------CCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy3253           3 QC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-------------KKTLSEDEIATILCDTLKGLEYLHLRR   68 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-------------~~~l~~~~~~~~~~~i~~~l~~LH~~~   68 (251)
                      ++ +||||+++++++.+....++||||+++|+|.+++...             ...+++..+..++.|++.||.|||++|
T Consensus       105 ~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~  184 (333)
T 2i1m_A          105 HLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKN  184 (333)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhcCCCCeeeEEEEEecCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCC
Confidence            45 8999999999999999999999999999999999743             346899999999999999999999999


Q ss_pred             ccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccc
Q psy3253          69 KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPF  146 (251)
Q Consensus        69 iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~  146 (251)
                      ++|||||                                 |+||+++.++.++|+|||++........  ......+++.
T Consensus       185 ivH~Dlk---------------------------------p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~  231 (333)
T 2i1m_A          185 CIHRDVA---------------------------------ARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVK  231 (333)
T ss_dssp             EECSCCS---------------------------------GGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGG
T ss_pred             cccCCcc---------------------------------cceEEECCCCeEEECccccccccccccceeecCCCCCCcc
Confidence            9999988                                 8888888888999999999976543211  2233456778


Q ss_pred             cccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCc
Q psy3253         147 WMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEE  225 (251)
Q Consensus       147 y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  225 (251)
                      |+|||.+.+..++.++|||||||++|+|++ |..||.+.............. .....+..+++++.+++.+||+.||++
T Consensus       232 y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~  310 (333)
T 2i1m_A          232 WMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLVKDG-YQMAQPAFAPKNIYSIMQACWALEPTH  310 (333)
T ss_dssp             GSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHHHHT-CCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHhccChhh
Confidence            999999988889999999999999999998 999997655443332221111 122235567999999999999999999


Q ss_pred             cCCHHHHhc
Q psy3253         226 RATASEMLN  234 (251)
Q Consensus       226 Rps~~evl~  234 (251)
                      |||++|+++
T Consensus       311 Rps~~~l~~  319 (333)
T 2i1m_A          311 RPTFQQICS  319 (333)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999986

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=6.5e-39  Score=268.29  Aligned_cols=199  Identities=16%  Similarity=0.188  Sum_probs=161.6

Q ss_pred             CC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           3 QC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++ +|||++++++++.++...++||||+ +++|.+++...+..+++..+..++.||+.||.|||++|++|||||      
T Consensus        61 ~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlk------  133 (298)
T 1csn_A           61 LLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIK------  133 (298)
T ss_dssp             HTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC------
T ss_pred             HHhcCCCCCeEEeecCCCceeEEEEEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCC------
Confidence            35 7999999999999999999999999 899999998666779999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCC-----eEecccccccccCcccc-------ccccccccccccc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH-----AKLADFGVAGQLTDTMA-------KRNTVIGTPFWMA  149 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~-----~kl~dfg~~~~~~~~~~-------~~~~~~~~~~y~a  149 (251)
                                                 |+||+++.++.     ++|+|||++........       ......||+.|+|
T Consensus       134 ---------------------------p~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  186 (298)
T 1csn_A          134 ---------------------------PDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMS  186 (298)
T ss_dssp             ---------------------------GGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCC
T ss_pred             ---------------------------HHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCC
Confidence                                       77888866655     99999999976543321       1234568999999


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc---hhhhhcCCC--CCCCCCCCCCCCHHHHHHHHHhhhcCcC
Q psy3253         150 PEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM---RAIFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPE  224 (251)
Q Consensus       150 PE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~  224 (251)
                      ||++.+..++.++|||||||++|+|++|..||.+....   .....+...  ..+.......+++++.+++.+||+.||+
T Consensus       187 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~  266 (298)
T 1csn_A          187 INTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFD  266 (298)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTT
T ss_pred             chhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHhcCCcc
Confidence            99999989999999999999999999999999764322   111111110  0011111346799999999999999999


Q ss_pred             ccCCHHHHhcC
Q psy3253         225 ERATASEMLNH  235 (251)
Q Consensus       225 ~Rps~~evl~h  235 (251)
                      +|||++++++.
T Consensus       267 ~RP~~~~l~~~  277 (298)
T 1csn_A          267 ATPDYDYLQGL  277 (298)
T ss_dssp             CCCCHHHHHHH
T ss_pred             cCCCHHHHHHH
Confidence            99999999743

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=100.00  E-value=1.5e-38  Score=263.98  Aligned_cols=196  Identities=27%  Similarity=0.459  Sum_probs=160.0

Q ss_pred             CCCCCCCccceeeeeEeeC-CeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN-TDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~-~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++.+. ...++||||+++++|.+++.... ..+++..+..++.|++.||.|||++|++|||||   
T Consensus        68 l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk---  144 (278)
T 1byg_A           68 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLA---  144 (278)
T ss_dssp             HTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS---
T ss_pred             HHhCCCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCC---
Confidence            4678999999999987544 57899999999999999997443 248999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                    |+||+++.++.++|+|||++......   .....+++.|+|||.+.+..+
T Consensus       145 ------------------------------p~Nil~~~~~~~~l~Dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~  191 (278)
T 1byg_A          145 ------------------------------ARNVLVSEDNVAKVSDFGLTKEASST---QDTGKLPVKWTAPEALREKKF  191 (278)
T ss_dssp             ------------------------------GGGEEECTTSCEEECCCCC---------------CCTTTSCHHHHHHCCC
T ss_pred             ------------------------------cceEEEeCCCcEEEeecccccccccc---ccCCCccccccCHHHhCCCCC
Confidence                                          88999999999999999998754432   223346788999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++||||+|+++|+|++ |..||...........+.....  ...+..+++++.+++.+||+.||++|||++|+++
T Consensus       192 ~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  266 (278)
T 1byg_A          192 STKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYK--MDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLRE  266 (278)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCC--CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCC--CCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHH
Confidence            999999999999999998 9999987766655554444322  2345678999999999999999999999999984

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=100.00  E-value=6.5e-39  Score=282.70  Aligned_cols=216  Identities=24%  Similarity=0.338  Sum_probs=150.0

Q ss_pred             CCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           4 CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT------LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         4 l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~------l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      .+||||+++++++.++...|+|||||+ |+|.+++......      ..+..+..++.||+.||.|||++||+||||||+
T Consensus        66 ~~HpnIv~~~~~~~~~~~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~  144 (434)
T 2rio_A           66 DDHPNVIRYYCSETTDRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQ  144 (434)
T ss_dssp             TTSTTBCCEEEEEECSSEEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGG
T ss_pred             cCCCCcCeEEEEEecCCeEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChH
Confidence            389999999999999999999999995 5999999733211      123345779999999999999999999999955


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc----ccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA----KRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~  153 (251)
                      |||+..+..                    ..........++.+||+|||+++.......    ......||+.|+|||++
T Consensus       145 NILl~~~~~--------------------~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  204 (434)
T 2rio_A          145 NILVSTSSR--------------------FTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELL  204 (434)
T ss_dssp             GEEEECCHH--------------------HHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHH
T ss_pred             hEEEecCcc--------------------cccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHh
Confidence            544431100                    000000012345799999999986643321    12234689999999999


Q ss_pred             cc-------CCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhh--hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCc
Q psy3253         154 QE-------IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAI--FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP  223 (251)
Q Consensus       154 ~~-------~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  223 (251)
                      .+       ..++.++||||+||++|+|++ |..||.+.......  ................+++++.++|.+||+.||
T Consensus       205 ~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  284 (434)
T 2rio_A          205 EESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDP  284 (434)
T ss_dssp             SCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHHHHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSG
T ss_pred             ccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHHHHhcCCCCcccccccccccchHHHHHHHHHHhhCCh
Confidence            65       568899999999999999999 99999755433211  111111111111122345789999999999999


Q ss_pred             CccCCHHHHhcChhhhh
Q psy3253         224 EERATASEMLNHEFIQR  240 (251)
Q Consensus       224 ~~Rps~~evl~hp~~~~  240 (251)
                      ++|||++|+++||||..
T Consensus       285 ~~Rps~~eil~hp~f~~  301 (434)
T 2rio_A          285 LKRPTAMKVLRHPLFWP  301 (434)
T ss_dssp             GGSCCHHHHHTSGGGSC
T ss_pred             hhCCCHHHHHhCCccCC
Confidence            99999999999999964

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=100.00  E-value=7.3e-39  Score=267.09  Aligned_cols=203  Identities=23%  Similarity=0.436  Sum_probs=167.8

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+.. .++||||+.+++|.+++......+++..+..++.|++.||.|||++|++|||||      
T Consensus        76 ~~l~h~~i~~~~~~~~~~~-~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dik------  148 (291)
T 1u46_A           76 HSLDHRNLIRLYGVVLTPP-MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLA------  148 (291)
T ss_dssp             HHCCCTTBCCEEEEECSSS-CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCC------
T ss_pred             HhCCCCCcccEEEEEccCC-ceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCc------
Confidence            4679999999999997665 899999999999999998766789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---cccccccccccccccccccCCC
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                 |+||+++.++.++|+|||++........   ......++..|+|||.+.+..+
T Consensus       149 ---------------------------p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  201 (291)
T 1u46_A          149 ---------------------------ARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTF  201 (291)
T ss_dssp             ---------------------------GGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEE
T ss_pred             ---------------------------hheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCC
Confidence                                       8899998889999999999976543221   1223346778999999988889


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++||||||+++|+|++ |..||.+.+.......+.... .....+..++.++.+++.+||+.||++|||++|+++  +
T Consensus       202 ~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~--~  278 (291)
T 1u46_A          202 SHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEG-ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRD--F  278 (291)
T ss_dssp             EHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSC-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH--H
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccC-CCCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHH--H
Confidence            999999999999999999 999998776655554443322 123345678999999999999999999999999995  5


Q ss_pred             hhhc
Q psy3253         238 IQRH  241 (251)
Q Consensus       238 ~~~~  241 (251)
                      ++..
T Consensus       279 l~~~  282 (291)
T 1u46_A          279 LLEA  282 (291)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5443

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=100.00  E-value=8.3e-39  Score=293.89  Aligned_cols=197  Identities=25%  Similarity=0.434  Sum_probs=165.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++. ....++||||+.+|+|.++++ ....+++..++.++.||+.||.|||++||+|||||     
T Consensus       424 l~~l~hpnIv~l~~~~~-~~~~~lv~E~~~~g~L~~~l~-~~~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLk-----  496 (635)
T 4fl3_A          424 MQQLDNPYIVRMIGICE-AESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLA-----  496 (635)
T ss_dssp             HHHCCCTTBCCEEEEEE-SSSEEEEEECCTTEEHHHHHH-HCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----
T ss_pred             HHhCCCCCEeeEEEEEe-cCCEEEEEEccCCCCHHHHHh-hCCCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCC-----
Confidence            35689999999999996 456899999999999999997 56789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---cccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.+||+|||+++.......   ......+|+.|+|||++.+..
T Consensus       497 ----------------------------p~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~  548 (635)
T 4fl3_A          497 ----------------------------ARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYK  548 (635)
T ss_dssp             ----------------------------GGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCC
T ss_pred             ----------------------------hHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCC
Confidence                                        8899999999999999999976543221   122234567899999999999


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++.++|||||||++|+|++ |..||.+.+.......+......  ..+..+++++.++|.+||+.||++|||++++++
T Consensus       549 ~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~--~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~  624 (635)
T 4fl3_A          549 FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERM--GCPAGCPREMYDLMNLCWTYDVENRPGFAAVEL  624 (635)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence            9999999999999999998 99999887776666555544332  346678999999999999999999999999974

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=100.00  E-value=7.9e-39  Score=265.85  Aligned_cols=204  Identities=25%  Similarity=0.411  Sum_probs=165.4

Q ss_pred             CCCCCCccceeeeeEee----------------CCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHH
Q psy3253           2 QQCDSPYVVKYYGSYFK----------------NTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYL   64 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~----------------~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~L   64 (251)
                      ++++||||+++++++..                ....++||||+++++|.+++... ...+++..+..++.|++.||.||
T Consensus        59 ~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l  138 (284)
T 2a19_B           59 AKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYI  138 (284)
T ss_dssp             HHCCCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            46899999999998864                44589999999999999999744 36799999999999999999999


Q ss_pred             HhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccc
Q psy3253          65 HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGT  144 (251)
Q Consensus        65 H~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  144 (251)
                      |++|++|||||                                 |+||+++.++.++|+|||++....... ......++
T Consensus       139 H~~~i~H~dlk---------------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~  184 (284)
T 2a19_B          139 HSKKLINRDLK---------------------------------PSNIFLVDTKQVKIGDFGLVTSLKNDG-KRTRSKGT  184 (284)
T ss_dssp             HHTTEECSCCS---------------------------------GGGEEEEETTEEEECCCTTCEESSCCS-CCCCCCSC
T ss_pred             HhCCeeeccCC---------------------------------HHHEEEcCCCCEEECcchhheeccccc-cccccCCc
Confidence            99999999988                                 889999889999999999997655432 23344688


Q ss_pred             cccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcC
Q psy3253         145 PFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE  224 (251)
Q Consensus       145 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  224 (251)
                      +.|+|||.+.+..++.++||||||+++|+|++|..|+.....  ....+...     ..+..+++.+.++|.+||+.||+
T Consensus       185 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~li~~~l~~dp~  257 (284)
T 2a19_B          185 LRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSK--FFTDLRDG-----IISDIFDKKEKTLLQKLLSKKPE  257 (284)
T ss_dssp             CTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHH--HHHHHHTT-----CCCTTSCHHHHHHHHHHTCSSGG
T ss_pred             ccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHH--HHHHhhcc-----cccccCCHHHHHHHHHHccCChh
Confidence            999999999988899999999999999999999988743211  11111111     12355789999999999999999


Q ss_pred             ccCCHHHHhcChhhhhccCCCC
Q psy3253         225 ERATASEMLNHEFIQRHDTDPS  246 (251)
Q Consensus       225 ~Rps~~evl~hp~~~~~~~~~~  246 (251)
                      +|||++|++++.+.-....+..
T Consensus       258 ~Rps~~e~l~~l~~~~~~~~~~  279 (284)
T 2a19_B          258 DRPNTSEILRTLTVWKKSPEKN  279 (284)
T ss_dssp             GSCCHHHHHHHHHHHTC-----
T ss_pred             hCcCHHHHHHHHHHHhhCCCcc
Confidence            9999999999988765544433

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=100.00  E-value=1.2e-37  Score=261.35  Aligned_cols=189  Identities=28%  Similarity=0.430  Sum_probs=150.6

Q ss_pred             CCCCCccceeeeeEee----CCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           3 QCDSPYVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~----~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      ..+||||+++++++.+    ....++||||+++|+|.+++.... ..+++..++.++.|++.||.|||++|++|||||  
T Consensus        67 ~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlk--  144 (299)
T 3m2w_A           67 ASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVK--  144 (299)
T ss_dssp             HTTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCS--
T ss_pred             hccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCC--
Confidence            4589999999999987    677999999999999999997543 469999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCC---CCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~---~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                                                     |+||+++.   ++.++|+|||++....                      
T Consensus       145 -------------------------------p~Nil~~~~~~~~~~kl~Dfg~a~~~~----------------------  171 (299)
T 3m2w_A          145 -------------------------------PENLLYTSKRPNAILKLTDFGFAKETT----------------------  171 (299)
T ss_dssp             -------------------------------GGGEEESSSSTTCCEEECCCTTCEECT----------------------
T ss_pred             -------------------------------HHHEEEecCCCCCcEEEeccccccccc----------------------
Confidence                                           77888876   6789999999985322                      


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCC----CCCCHHHHHHHHHhhhcCcCccCCH
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREP----DVWTPEFIDFVSRCLVKNPEERATA  229 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~li~~~l~~~p~~Rps~  229 (251)
                      +..++.++||||+||++|+|++|..||.+.............. ......+    ..+++++.+++.+||+.||++|||+
T Consensus       172 ~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~  251 (299)
T 3m2w_A          172 GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTI  251 (299)
T ss_dssp             TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCH
T ss_pred             cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCH
Confidence            2346789999999999999999999997654433221111111 1111112    5679999999999999999999999


Q ss_pred             HHHhcChhhhhccCCCC
Q psy3253         230 SEMLNHEFIQRHDTDPS  246 (251)
Q Consensus       230 ~evl~hp~~~~~~~~~~  246 (251)
                      +|+++||||++....+.
T Consensus       252 ~e~l~hp~~~~~~~~~~  268 (299)
T 3m2w_A          252 TEFMNHPWIMQSTKVPQ  268 (299)
T ss_dssp             HHHHTSHHHHTGGGSCC
T ss_pred             HHHhcChhhcccccCCC
Confidence            99999999987665443

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=100.00  E-value=9e-39  Score=271.43  Aligned_cols=200  Identities=27%  Similarity=0.460  Sum_probs=164.0

Q ss_pred             CCCCCCCccceeeeeEe--eCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYF--KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~--~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++.  +....++||||+++++|.+++......+++..++.++.|++.||.|||++|++|||||   
T Consensus        78 l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dik---  154 (327)
T 3lxl_A           78 LKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLA---  154 (327)
T ss_dssp             HHTCCCTTBCCEEEEEECSSSCEEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS---
T ss_pred             HHhcCCCceeEEEEEEecCCCceEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCC---
Confidence            35789999999999886  4567999999999999999998666789999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---ccccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~  155 (251)
                                                    |+||+++.++.++|+|||++........   ......++..|+|||++.+
T Consensus       155 ------------------------------p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  204 (327)
T 3lxl_A          155 ------------------------------ARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSD  204 (327)
T ss_dssp             ------------------------------GGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHH
T ss_pred             ------------------------------hhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhcc
Confidence                                          8899999999999999999976543221   2233456778999999998


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcch---------------hhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhh
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMR---------------AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLV  220 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  220 (251)
                      ..++.++|||||||++|+|++|..||.......               ....+....  ....+..+++++.+++.+||+
T Consensus       205 ~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~  282 (327)
T 3lxl_A          205 NIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQ--RLPAPPACPAEVHELMKLCWA  282 (327)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTC--CCCCCTTCCHHHHHHHHHHTC
T ss_pred             CCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhccc--CCCCCCcccHHHHHHHHHHcC
Confidence            889999999999999999999999985432211               111111111  223466789999999999999


Q ss_pred             cCcCccCCHHHHhcC
Q psy3253         221 KNPEERATASEMLNH  235 (251)
Q Consensus       221 ~~p~~Rps~~evl~h  235 (251)
                      .||++|||++|++++
T Consensus       283 ~dP~~Rps~~ell~~  297 (327)
T 3lxl_A          283 PSPQDRPSFSALGPQ  297 (327)
T ss_dssp             SSGGGSCCHHHHHHH
T ss_pred             CChhhCcCHHHHHHH
Confidence            999999999999654

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=277.74  Aligned_cols=198  Identities=21%  Similarity=0.251  Sum_probs=158.4

Q ss_pred             CCCCCCccceeeeeEee----CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~----~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      ++++||||+++++++..    ....|+||||+ +++|.+++.. ...+++..++.++.||+.||.|||++|++|||||  
T Consensus       103 ~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~-~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk--  178 (345)
T 2v62_A          103 KQLDYLGIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQKISGQ-NGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIK--  178 (345)
T ss_dssp             HTCSCCCCCCEEEEEEEESSSCEEEEEEEECE-EEEHHHHCBG-GGBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS--
T ss_pred             ccccccCcceeecccccccCCCcEEEEEEecc-CCCHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcC--
Confidence            46799999999999987    67899999999 8999999863 3489999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCC--CeEecccccccccCcccc-------cccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG--HAKLADFGVAGQLTDTMA-------KRNTVIGTPFWM  148 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~--~~kl~dfg~~~~~~~~~~-------~~~~~~~~~~y~  148 (251)
                                                     |+||+++.++  .+||+|||+++.......       ......+|+.|+
T Consensus       179 -------------------------------p~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~  227 (345)
T 2v62_A          179 -------------------------------AANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFT  227 (345)
T ss_dssp             -------------------------------GGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTC
T ss_pred             -------------------------------HHHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCcccc
Confidence                                           8888887776  899999999976543211       113346889999


Q ss_pred             cccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc-hhhhh----cCCCCCC---CCCCCCCCCHHHHHHHHHhhh
Q psy3253         149 APEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM-RAIFM----IPTKPPP---SFREPDVWTPEFIDFVSRCLV  220 (251)
Q Consensus       149 aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~-~~~~~----~~~~~~~---~~~~~~~~~~~~~~li~~~l~  220 (251)
                      |||++.+..++.++|||||||++|+|++|..||.+.... .....    .....+.   .......+++++.++|.+||.
T Consensus       228 aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~  307 (345)
T 2v62_A          228 SLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHS  307 (345)
T ss_dssp             CHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHT
T ss_pred             CHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhh
Confidence            999999988999999999999999999999999542111 11111    0001000   000122679999999999999


Q ss_pred             cCcCccCCHHHHhc
Q psy3253         221 KNPEERATASEMLN  234 (251)
Q Consensus       221 ~~p~~Rps~~evl~  234 (251)
                      .||++|||++|+++
T Consensus       308 ~dp~~Rps~~~l~~  321 (345)
T 2v62_A          308 LAYDEKPNYQALKK  321 (345)
T ss_dssp             CCTTCCCCHHHHHH
T ss_pred             cCcccCCCHHHHHH
Confidence            99999999999974

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=7.2e-39  Score=270.14  Aligned_cols=196  Identities=30%  Similarity=0.521  Sum_probs=161.6

Q ss_pred             CCCccceeeeeEeeCC-eEEEEEEccCCCCHHHHHHHhCCC---------------CCHHHHHHHHHHHHHHHHHHHhCC
Q psy3253           5 DSPYVVKYYGSYFKNT-DLWIVMEYCGAGSVSDIMRLRKKT---------------LSEDEIATILCDTLKGLEYLHLRR   68 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~-~~~lv~e~~~~gsL~~~~~~~~~~---------------l~~~~~~~~~~~i~~~l~~LH~~~   68 (251)
                      +||||+++++++.... ..++||||+++|+|.+++......               +++..+..++.|++.||.|||++|
T Consensus        89 ~hp~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~  168 (316)
T 2xir_A           89 HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK  168 (316)
T ss_dssp             CCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCeeeEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCC
Confidence            6999999999987654 599999999999999999743322               899999999999999999999999


Q ss_pred             ccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--ccccccccccc
Q psy3253          69 KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPF  146 (251)
Q Consensus        69 iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~  146 (251)
                      ++|||||                                 |+||+++.++.++|+|||++.......  .......+++.
T Consensus       169 i~H~dik---------------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~  215 (316)
T 2xir_A          169 CIHRDLA---------------------------------ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLK  215 (316)
T ss_dssp             CCCSCCS---------------------------------GGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGG
T ss_pred             cccccCc---------------------------------cceEEECCCCCEEECCCccccccccCccceeccCCCccee
Confidence            9999988                                 889999888999999999997654321  12334457888


Q ss_pred             cccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhh-hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcC
Q psy3253         147 WMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAI-FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE  224 (251)
Q Consensus       147 y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  224 (251)
                      |+|||++.+..++.++||||+||++|+|++ |..||.+....... ..+....  ....+..+++++.+++.+||+.||+
T Consensus       216 y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~dp~  293 (316)
T 2xir_A          216 WMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT--RMRAPDYTTPEMYQTMLDCWHGEPS  293 (316)
T ss_dssp             GCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTC--CCCCCTTCCHHHHHHHHHHTCSSGG
T ss_pred             ecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHhccCc--cCCCCCCCCHHHHHHHHHHcCCChh
Confidence            999999998899999999999999999998 99999765543322 1222221  2223566899999999999999999


Q ss_pred             ccCCHHHHhcC
Q psy3253         225 ERATASEMLNH  235 (251)
Q Consensus       225 ~Rps~~evl~h  235 (251)
                      +|||++|+++|
T Consensus       294 ~Rps~~ell~~  304 (316)
T 2xir_A          294 QRPTFSELVEH  304 (316)
T ss_dssp             GSCCHHHHHHH
T ss_pred             hCcCHHHHHHH
Confidence            99999999976

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=100.00  E-value=1.5e-38  Score=263.94  Aligned_cols=197  Identities=26%  Similarity=0.453  Sum_probs=164.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      ++++||||+++++++. .+..++||||+.+++|.+++.... ..+++..+..++.|++.||.|||++|++|||||     
T Consensus        63 ~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dik-----  136 (279)
T 1qpc_A           63 KQLQHQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR-----  136 (279)
T ss_dssp             HHCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----
T ss_pred             HhCCCcCcceEEEEEc-CCCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCC-----
Confidence            4689999999999986 456899999999999999986322 379999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.++|+|||.+........ ......++..|+|||.+.+..++
T Consensus       137 ----------------------------p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  188 (279)
T 1qpc_A          137 ----------------------------AANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFT  188 (279)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEEC
T ss_pred             ----------------------------HhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhhhccCCCC
Confidence                                        8899999999999999999976543321 12233457789999999888899


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .++||||||+++|+|++ |..||.+.........+.....  ...+..+++++.+++.+||+.||++|||++++++
T Consensus       189 ~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  262 (279)
T 1qpc_A          189 IKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYR--MVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRS  262 (279)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCC--CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             chhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcccC--CCCcccccHHHHHHHHHHhccChhhCCCHHHHHH
Confidence            99999999999999999 9999987766555544433322  2235678999999999999999999999999986

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=1.2e-38  Score=274.90  Aligned_cols=202  Identities=23%  Similarity=0.348  Sum_probs=155.7

Q ss_pred             CCCccceeeeeEeeCC----eEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCCCC
Q psy3253           5 DSPYVVKYYGSYFKNT----DLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLR-RKIHRDIKAGS   78 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~----~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~-~iiH~dik~~N   78 (251)
                      .||||+++++++....    ..+++|||+ +++|.+++... ...+++..++.++.||+.||.|||++ |++|||||   
T Consensus        84 ~~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dik---  159 (373)
T 1q8y_A           84 GANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIK---  159 (373)
T ss_dssp             HHTTBCCCCEEEEEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCS---
T ss_pred             ccchHHHHHHHhhccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCC---
Confidence            4899999999997654    799999999 88999999753 35699999999999999999999998 99999999   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecC------CCCCeEecccccccccCcccccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN------TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEV  152 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~  152 (251)
                                                    |+||+++      ..+.++|+|||++......   .....+|+.|+|||+
T Consensus       160 ------------------------------p~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE~  206 (373)
T 1q8y_A          160 ------------------------------PENVLMEIVDSPENLIQIKIADLGNACWYDEH---YTNSIQTREYRSPEV  206 (373)
T ss_dssp             ------------------------------GGGEEEEEEETTTTEEEEEECCCTTCEETTBC---CCSCCSCGGGCCHHH
T ss_pred             ------------------------------hHHeEEeccCCCcCcceEEEcccccccccCCC---CCCCCCCccccCcHH
Confidence                                          6666663      3346999999999765432   233467899999999


Q ss_pred             cccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcch------hhhh---cCCCCC-------------------------
Q psy3253         153 IQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMR------AIFM---IPTKPP-------------------------  198 (251)
Q Consensus       153 ~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~------~~~~---~~~~~~-------------------------  198 (251)
                      +.+..++.++|||||||++|+|++|..||.......      ....   .....+                         
T Consensus       207 ~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  286 (373)
T 1q8y_A          207 LLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISK  286 (373)
T ss_dssp             HHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCC
T ss_pred             HhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhccccc
Confidence            999899999999999999999999999996543110      0000   000000                         


Q ss_pred             -----------CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         199 -----------PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       199 -----------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                                 .....+...++++.+||.+||+.||++|||++|+++||||++...
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  342 (373)
T 1q8y_A          287 LKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLG  342 (373)
T ss_dssp             CCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTT
T ss_pred             ccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhChhhhcccC
Confidence                       000112234577899999999999999999999999999997543

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=100.00  E-value=2.7e-38  Score=267.06  Aligned_cols=199  Identities=23%  Similarity=0.373  Sum_probs=161.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.+....++||||+++++|.+++......+++..+..++.|++.||.|||++|++|||||     
T Consensus        83 l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlk-----  157 (319)
T 2y4i_B           83 YRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLK-----  157 (319)
T ss_dssp             GTTCCCTTBCCCCEEEECSSCEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----
T ss_pred             HhcCCCCCEeEEEEEEecCCceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC-----
Confidence            467899999999999999999999999999999999997555679999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc-----ccccccccccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT-----MAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                  |+||+++ ++.++|+|||++......     ........+++.|+|||++.+
T Consensus       158 ----------------------------p~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~  208 (319)
T 2y4i_B          158 ----------------------------SKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQ  208 (319)
T ss_dssp             ----------------------------STTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSC
T ss_pred             ----------------------------hhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhh
Confidence                                        7788887 578999999998654321     112233457889999999864


Q ss_pred             ---------CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         156 ---------IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       156 ---------~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                               ..++.++|||||||++|+|++|..||...........+.....+.. ....++.++.+++.+||..||++|
T Consensus       209 ~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~R  287 (319)
T 2y4i_B          209 LSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNL-SQIGMGKEISDILLFCWAFEQEER  287 (319)
T ss_dssp             BSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCCCC-CCSSCCTTHHHHHHHHHCSSTTTS
T ss_pred             ccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCCCC-CcCCCCHHHHHHHHHHhcCChhhC
Confidence                     4578899999999999999999999987766655544433332222 234578999999999999999999


Q ss_pred             CCHHHHhc
Q psy3253         227 ATASEMLN  234 (251)
Q Consensus       227 ps~~evl~  234 (251)
                      ||++|+++
T Consensus       288 pt~~~l~~  295 (319)
T 2y4i_B          288 PTFTKLMD  295 (319)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence            99999984

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-38  Score=267.78  Aligned_cols=194  Identities=26%  Similarity=0.481  Sum_probs=153.3

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHh---CCccccCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK--TLSEDEIATILCDTLKGLEYLHL---RRKIHRDIKA   76 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~--~l~~~~~~~~~~~i~~~l~~LH~---~~iiH~dik~   76 (251)
                      ++++||||+++++++.+  ..++||||+++|+|.+++.....  .++...++.++.|++.||.|||+   +|++||||| 
T Consensus        56 ~~l~hp~iv~~~~~~~~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlk-  132 (307)
T 2eva_A           56 SRVNHPNIVKLYGACLN--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLK-  132 (307)
T ss_dssp             HHCCCTTBCCEEEBCTT--TTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCS-
T ss_pred             hcCCCCCcCeEEEEEcC--CcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCC-
Confidence            46899999999999874  47999999999999999974332  47899999999999999999999   899999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCC-eEecccccccccCccccccccccccccccccccccc
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH-AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~-~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                      |+||+++.++. +||+|||++......   .....+++.|+|||++.+
T Consensus       133 --------------------------------p~NIll~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~  177 (307)
T 2eva_A          133 --------------------------------PPNLLLVAGGTVLKICDFGTACDIQTH---MTNNKGSAAWMAPEVFEG  177 (307)
T ss_dssp             --------------------------------GGGEEEETTTTEEEECCCCC---------------CCTTSSCHHHHTC
T ss_pred             --------------------------------hhHEEEeCCCCEEEEcccccccccccc---cccCCCCCceEChhhhCC
Confidence                                            88888887776 799999999654322   223457899999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcch--hhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMR--AIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                      ..++.++||||||+++|+|++|..||.......  .........  ....+..+++.+.+++.+||+.||++|||++|++
T Consensus       178 ~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell  255 (307)
T 2eva_A          178 SNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGT--RPPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIV  255 (307)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTC--CCCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCC--CCCcccccCHHHHHHHHHHhcCChhhCcCHHHHH
Confidence            899999999999999999999999997543322  111222222  2223567899999999999999999999999998


Q ss_pred             cC
Q psy3253         234 NH  235 (251)
Q Consensus       234 ~h  235 (251)
                      ++
T Consensus       256 ~~  257 (307)
T 2eva_A          256 KI  257 (307)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=268.41  Aligned_cols=199  Identities=22%  Similarity=0.400  Sum_probs=158.3

Q ss_pred             CCCCCCccceeeeeEee----CCeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           2 QQCDSPYVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~----~~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      ++++||||+++++++..    ....++||||+.+|+|.+++..   .+..+++..++.++.|++.||.|||++|++||||
T Consensus        81 ~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dl  160 (317)
T 2buj_A           81 RLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDL  160 (317)
T ss_dssp             HTCCCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             hhcCCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            57899999999999872    3478999999999999999974   3567999999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---------ccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---------KRNTVIGTP  145 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---------~~~~~~~~~  145 (251)
                      |                                 |+||+++.++.++|+|||.+........         ......+++
T Consensus       161 k---------------------------------p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~  207 (317)
T 2buj_A          161 K---------------------------------PTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTI  207 (317)
T ss_dssp             C---------------------------------GGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCG
T ss_pred             C---------------------------------HHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCc
Confidence            8                                 8899999999999999999865432111         112234688


Q ss_pred             ccccccccccCC---CCcchhHHHHHHHHHHHHhCCCCCCCCCc--chhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhh
Q psy3253         146 FWMAPEVIQEIG---YDCVADMWSLGITALEMAEGKPPYGDIHP--MRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLV  220 (251)
Q Consensus       146 ~y~aPE~~~~~~---~~~~~DvwslG~~l~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~  220 (251)
                      .|+|||.+.+..   ++.++||||||+++|+|++|..||.....  ......+...  ........+++++.++|.+||+
T Consensus       208 ~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~li~~~l~  285 (317)
T 2buj_A          208 SYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQ--LSIPQSPRHSSALWQLLNSMMT  285 (317)
T ss_dssp             GGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHCC----CCCCTTSCHHHHHHHHHHTC
T ss_pred             ccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhhcc--CCCCccccCCHHHHHHHHHHhh
Confidence            999999987543   68899999999999999999999943111  1111111111  1222345679999999999999


Q ss_pred             cCcCccCCHHHHhcC
Q psy3253         221 KNPEERATASEMLNH  235 (251)
Q Consensus       221 ~~p~~Rps~~evl~h  235 (251)
                      .||++|||++|++++
T Consensus       286 ~dp~~Rps~~~ll~~  300 (317)
T 2buj_A          286 VDPHQRPHIPLLLSQ  300 (317)
T ss_dssp             SSGGGSCCHHHHHHH
T ss_pred             cChhhCCCHHHHHHH
Confidence            999999999999975

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=8.1e-38  Score=265.95  Aligned_cols=198  Identities=28%  Similarity=0.462  Sum_probs=154.3

Q ss_pred             CCCCCccceeeeeEeeC----CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC--------Ccc
Q psy3253           3 QCDSPYVVKYYGSYFKN----TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR--------RKI   70 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~----~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~--------~ii   70 (251)
                      .++||||+++++++...    ...++||||+++|+|.++++.  ..+++..+..++.|++.||.|||++        |++
T Consensus        87 ~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~iv  164 (337)
T 3mdy_A           87 LMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKS--TTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIA  164 (337)
T ss_dssp             TCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEE
T ss_pred             hhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEE
Confidence            45999999999999877    789999999999999999963  4799999999999999999999998        999


Q ss_pred             ccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc----ccccccccc
Q psy3253          71 HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK----RNTVIGTPF  146 (251)
Q Consensus        71 H~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~----~~~~~~~~~  146 (251)
                      |||||                                 |+||+++.++.+||+|||++.........    .....||+.
T Consensus       165 H~Dik---------------------------------p~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~  211 (337)
T 3mdy_A          165 HRDLK---------------------------------SKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKR  211 (337)
T ss_dssp             CSCCC---------------------------------GGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGG
T ss_pred             ecccc---------------------------------hHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcc
Confidence            99988                                 88999999999999999999765432221    124468999


Q ss_pred             cccccccccCCCCcc------hhHHHHHHHHHHHHhC----------CCCCCCCCcch----hhhh-c-CCCCCCCCC--
Q psy3253         147 WMAPEVIQEIGYDCV------ADMWSLGITALEMAEG----------KPPYGDIHPMR----AIFM-I-PTKPPPSFR--  202 (251)
Q Consensus       147 y~aPE~~~~~~~~~~------~DvwslG~~l~~l~~g----------~~p~~~~~~~~----~~~~-~-~~~~~~~~~--  202 (251)
                      |+|||++.+...+..      +|||||||++|+|++|          ..||.......    .... + .....+...  
T Consensus       212 y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (337)
T 3mdy_A          212 YMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNR  291 (337)
T ss_dssp             GCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG
T ss_pred             eeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCcccccc
Confidence            999999977665554      9999999999999999          66664332111    1111 1 111111111  


Q ss_pred             -CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         203 -EPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       203 -~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                       ....+++++.+++.+||+.||++|||++|++++
T Consensus       292 ~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  325 (337)
T 3mdy_A          292 WSSDECLRQMGKLMTECWAHNPASRLTALRVKKT  325 (337)
T ss_dssp             GGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHH
Confidence             112456779999999999999999999999965

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=100.00  E-value=1.8e-38  Score=286.70  Aligned_cols=198  Identities=26%  Similarity=0.416  Sum_probs=167.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++||||+++++++.+ ...|+||||+.+|+|.++++.. ...+++.+++.++.||+.||.|||++|++|||||    
T Consensus       316 l~~l~hpniv~~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlk----  390 (535)
T 2h8h_A          316 MKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR----  390 (535)
T ss_dssp             HHHCCCTTBCCEEEEECS-SSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS----
T ss_pred             HHhCCCCCEeeEEEEEee-ccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCC----
Confidence            357899999999999866 6789999999999999999643 3569999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.+||+|||+++....... ......++..|+|||++.+..+
T Consensus       391 -----------------------------p~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  441 (535)
T 2h8h_A          391 -----------------------------AANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRF  441 (535)
T ss_dssp             -----------------------------GGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCCC
T ss_pred             -----------------------------HhhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCHHHhccCCC
Confidence                                         8899998889999999999976543211 1223345678999999998899


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +.++|||||||++|+|++ |..||.+.........+....  ....+..++.++.+||.+||+.||++|||++++++
T Consensus       442 ~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~--~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~  516 (535)
T 2h8h_A          442 TIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGY--RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQA  516 (535)
T ss_dssp             CHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC--CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence            999999999999999999 999998877666555544432  22345678999999999999999999999999985

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.6e-38  Score=266.20  Aligned_cols=197  Identities=27%  Similarity=0.466  Sum_probs=154.2

Q ss_pred             CCCCCccceeeeeEee----CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH--------hCCcc
Q psy3253           3 QCDSPYVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH--------LRRKI   70 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~----~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH--------~~~ii   70 (251)
                      +++||||+++++++..    ....++||||+++|+|.++++  ...+++..+..++.|++.||.|||        +.|++
T Consensus        58 ~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~--~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~iv  135 (301)
T 3q4u_A           58 MLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQ--LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIA  135 (301)
T ss_dssp             CCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHT--TCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEE
T ss_pred             hccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHHHh--hcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCee
Confidence            4799999999998754    346899999999999999995  568999999999999999999999        99999


Q ss_pred             ccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc----ccccccccc
Q psy3253          71 HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK----RNTVIGTPF  146 (251)
Q Consensus        71 H~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~----~~~~~~~~~  146 (251)
                      |||||                                 |+||+++.++.+||+|||+++........    .....||+.
T Consensus       136 H~Dlk---------------------------------p~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~  182 (301)
T 3q4u_A          136 HRDLK---------------------------------SKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKR  182 (301)
T ss_dssp             CSCCC---------------------------------GGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGG
T ss_pred             cCCCC---------------------------------hHhEEEcCCCCEEEeeCCCeeecccccccccccccccccccc
Confidence            99988                                 88999999999999999999654432221    223468999


Q ss_pred             cccccccccC------CCCcchhHHHHHHHHHHHHhC----------CCCCCCCCcc----hhhhh-cC-CCCCCCCC--
Q psy3253         147 WMAPEVIQEI------GYDCVADMWSLGITALEMAEG----------KPPYGDIHPM----RAIFM-IP-TKPPPSFR--  202 (251)
Q Consensus       147 y~aPE~~~~~------~~~~~~DvwslG~~l~~l~~g----------~~p~~~~~~~----~~~~~-~~-~~~~~~~~--  202 (251)
                      |+|||++.+.      .++.++|||||||++|+|++|          ..||......    ..... .. ....+...  
T Consensus       183 y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (301)
T 3q4u_A          183 YMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNR  262 (301)
T ss_dssp             GCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG
T ss_pred             eeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCcchhhhhHHHhccCCCCCCChh
Confidence            9999999775      455789999999999999999          8888543221    11111 11 11111111  


Q ss_pred             -CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         203 -EPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       203 -~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                       .....++++.+++.+||+.||++|||++|+++
T Consensus       263 ~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~  295 (301)
T 3q4u_A          263 WFSDPTLTSLAKLMKECWYQNPSARLTALRIKK  295 (301)
T ss_dssp             GGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             hccCccHHHHHHHHHHHhhcChhhCCCHHHHHH
Confidence             01224577999999999999999999999985

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=100.00  E-value=1.6e-38  Score=265.45  Aligned_cols=198  Identities=19%  Similarity=0.257  Sum_probs=157.2

Q ss_pred             CCCCCccceeeeeE-eeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           3 QCDSPYVVKYYGSY-FKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         3 ~l~hpniv~l~~~~-~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +++|++++..+..+ ..+...++||||+ +++|.+++......+++..+..++.||+.||.|||++|++|||||      
T Consensus        60 ~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlk------  132 (296)
T 4hgt_A           60 MMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVK------  132 (296)
T ss_dssp             HHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS------
T ss_pred             HhcCCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCC------
Confidence            45677766665554 6778899999999 889999998667789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceec---CCCCCeEecccccccccCcccc-------ccccccccccccccc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL---NTEGHAKLADFGVAGQLTDTMA-------KRNTVIGTPFWMAPE  151 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~---~~~~~~kl~dfg~~~~~~~~~~-------~~~~~~~~~~y~aPE  151 (251)
                                                 |+||++   +.++.+||+|||++........       ......+|+.|+|||
T Consensus       133 ---------------------------p~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  185 (296)
T 4hgt_A          133 ---------------------------PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASIN  185 (296)
T ss_dssp             ---------------------------GGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHH
T ss_pred             ---------------------------HHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchH
Confidence                                       778887   6778899999999976543321       123456889999999


Q ss_pred             ccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh---hhhcCCC--CCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         152 VIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA---IFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       152 ~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      .+.+..++.++||||+||++|++++|..||.+......   ...+...  ..+.......+++++.+++.+||+.||++|
T Consensus       186 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~R  265 (296)
T 4hgt_A          186 THLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDK  265 (296)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCC
T ss_pred             HhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999975433211   1111000  000001125578999999999999999999


Q ss_pred             CCHHHHhc
Q psy3253         227 ATASEMLN  234 (251)
Q Consensus       227 ps~~evl~  234 (251)
                      ||++|+++
T Consensus       266 pt~~~l~~  273 (296)
T 4hgt_A          266 PDYSYLRQ  273 (296)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence            99999975

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=100.00  E-value=4.6e-38  Score=266.29  Aligned_cols=196  Identities=24%  Similarity=0.438  Sum_probs=160.6

Q ss_pred             CCCCCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      ++++||||+++++++.+  ....++||||+++|+|.+++.  ...+++..+..++.|++.||.|||++|++|||||    
T Consensus        88 ~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~--~~~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dik----  161 (318)
T 3lxp_A           88 RTLYHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLP--RHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLA----  161 (318)
T ss_dssp             HHCCCTTBCCEEEEEEETTTTEEEEEECCCTTCBHHHHGG--GSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS----
T ss_pred             HhCCCcchhhEEEEEecCCCceEEEEEecccCCcHHHHHh--hCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCc----
Confidence            46899999999999987  467899999999999999986  3459999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---cccccccccccccccccccC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQEI  156 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~  156 (251)
                                                   |+||+++.++.++|+|||++........   ......++..|+|||++.+.
T Consensus       162 -----------------------------p~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  212 (318)
T 3lxp_A          162 -----------------------------ARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEY  212 (318)
T ss_dssp             -----------------------------GGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHC
T ss_pred             -----------------------------hheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCC
Confidence                                         8899999999999999999976543321   12334567789999999988


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCCCCCCCCcc---------------hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhc
Q psy3253         157 GYDCVADMWSLGITALEMAEGKPPYGDIHPM---------------RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVK  221 (251)
Q Consensus       157 ~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~  221 (251)
                      .++.++||||+||++|+|++|..||......               .....+....  ....+..+++++.++|.+||+.
T Consensus       213 ~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~  290 (318)
T 3lxp_A          213 KFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGE--RLPRPDKCPAEVYHLMKNCWET  290 (318)
T ss_dssp             EEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTC--CCCCCTTCCHHHHHHHHHHTCS
T ss_pred             CCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhccc--CCCCCccccHHHHHHHHHHcCC
Confidence            8999999999999999999999998643211               0111111111  2334667899999999999999


Q ss_pred             CcCccCCHHHHhc
Q psy3253         222 NPEERATASEMLN  234 (251)
Q Consensus       222 ~p~~Rps~~evl~  234 (251)
                      ||++|||++|+++
T Consensus       291 dP~~Rps~~ell~  303 (318)
T 3lxp_A          291 EASFRPTFENLIP  303 (318)
T ss_dssp             SGGGSCCHHHHHH
T ss_pred             CcccCcCHHHHHH
Confidence            9999999999984

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=100.00  E-value=6.1e-38  Score=289.10  Aligned_cols=198  Identities=27%  Similarity=0.487  Sum_probs=165.1

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++. ++..|+||||+++|+|.++++.....+++..+..++.|++.||.|||++|++|||||      
T Consensus       446 ~~l~HpnIv~l~~~~~-~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDik------  518 (656)
T 2j0j_A          446 RQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIA------  518 (656)
T ss_dssp             HHCCCTTBCCEEEEEC-SSSCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS------
T ss_pred             HhCCCCCCCeEEEEEe-cCceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccccccc------
Confidence            4689999999999984 556899999999999999998666689999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCCCc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                 |+||+++.++.+||+|||+++....... ......+++.|+|||++.+..++.
T Consensus       519 ---------------------------p~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~  571 (656)
T 2j0j_A          519 ---------------------------ARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTS  571 (656)
T ss_dssp             ---------------------------GGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCH
T ss_pred             ---------------------------hHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCc
Confidence                                       8899999999999999999976543321 122334567899999998889999


Q ss_pred             chhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         161 VADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ++|||||||++|+|++ |..||.+.........+......  ..+..+++.+.++|.+||..||++|||++|+++.
T Consensus       572 ~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~~~--~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~  645 (656)
T 2j0j_A          572 ASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERL--PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  645 (656)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCCC--CCCccccHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            9999999999999997 99999877666655444333222  2356789999999999999999999999999853

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=100.00  E-value=2.4e-38  Score=289.49  Aligned_cols=207  Identities=27%  Similarity=0.361  Sum_probs=160.6

Q ss_pred             CCCCCCccceeeeeEee------CCeEEEEEEccCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCccccC
Q psy3253           2 QQCDSPYVVKYYGSYFK------NTDLWIVMEYCGAGSVSDIMRLRK--KTLSEDEIATILCDTLKGLEYLHLRRKIHRD   73 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~------~~~~~lv~e~~~~gsL~~~~~~~~--~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~d   73 (251)
                      ++++||||+++++++..      +...++||||+++|+|.+++....  ..+++..++.++.|++.||.|||+.|++|||
T Consensus        67 ~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrD  146 (676)
T 3qa8_A           67 KKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRD  146 (676)
T ss_dssp             HHCCBTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCC
T ss_pred             HhCCCCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCC
Confidence            46899999999999765      667899999999999999997433  2689999999999999999999999999999


Q ss_pred             CCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCC---eEecccccccccCcccccccccccccccccc
Q psy3253          74 IKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH---AKLADFGVAGQLTDTMAKRNTVIGTPFWMAP  150 (251)
Q Consensus        74 ik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~---~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  150 (251)
                      ||                                 |+||+++.++.   ++|+|||.+...... .......+++.|+||
T Consensus       147 LK---------------------------------P~NILl~~~g~~~~vKL~DFG~a~~~~~~-~~~~~~~gt~~Y~AP  192 (676)
T 3qa8_A          147 LK---------------------------------PENIVLQPGPQRLIHKIIDLGYAKELDQG-ELCTEFVGTLQYLAP  192 (676)
T ss_dssp             CC---------------------------------STTEEEECCSSSCEEEECSCCCCCBTTSC-CCCCCCCSCCTTCSS
T ss_pred             CC---------------------------------HHHeEeecCCCceeEEEcccccccccccc-cccccccCCcccCCh
Confidence            99                                 66777765553   899999999765543 223445689999999


Q ss_pred             cccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhh--------------hcCCC-------CCCCCCCCCCCCH
Q psy3253         151 EVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIF--------------MIPTK-------PPPSFREPDVWTP  209 (251)
Q Consensus       151 E~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~--------------~~~~~-------~~~~~~~~~~~~~  209 (251)
                      |.+.+..++.++||||+||++|++++|..||..........              ....+       .+........+++
T Consensus       193 E~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~  272 (676)
T 3qa8_A          193 ELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAG  272 (676)
T ss_dssp             CSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHH
T ss_pred             HHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhH
Confidence            99999999999999999999999999999996432111100              00000       0001111233568


Q ss_pred             HHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         210 EFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       210 ~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                      .+.++|.+||.+||++|||++|+++||||+..+
T Consensus       273 ~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~  305 (676)
T 3qa8_A          273 KLERWLQCMLMWHQRQRGTDPQNPNVGCFQALD  305 (676)
T ss_dssp             HHHHHHHHHSCSSCC---CCTTCCCCTTHHHHH
T ss_pred             HHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHH
Confidence            899999999999999999999999999998754

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=100.00  E-value=2e-38  Score=269.84  Aligned_cols=198  Identities=23%  Similarity=0.346  Sum_probs=149.2

Q ss_pred             CCCCCCccceeeeeEee-----CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC---------
Q psy3253           2 QQCDSPYVVKYYGSYFK-----NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR---------   67 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~-----~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~---------   67 (251)
                      +.++||||+++++.+..     ....++||||+++|+|.+++..  ...++..+..++.||+.||.|||+.         
T Consensus        62 ~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~  139 (336)
T 3g2f_A           62 PLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSL--HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKP  139 (336)
T ss_dssp             TTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBC
T ss_pred             HhccCcchhhheecccccccCCCceEEEEEecCCCCcHHHHHhh--cccchhHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence            46899999999986542     3367999999999999999963  4558999999999999999999999         


Q ss_pred             CccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--------cccc
Q psy3253          68 RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--------AKRN  139 (251)
Q Consensus        68 ~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--------~~~~  139 (251)
                      |++|||||                                 |+||+++.++.+||+|||+++......        ....
T Consensus       140 ~ivH~Dik---------------------------------p~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~  186 (336)
T 3g2f_A          140 AISHRDLN---------------------------------SRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAI  186 (336)
T ss_dssp             CEECSSCS---------------------------------GGGEEECTTSCEEECCCTTCEECSSSSCC---------C
T ss_pred             ceeecccc---------------------------------cceEEEcCCCcEEEeeccceeecccccccCccccccccc
Confidence            99999988                                 889999999999999999997654321        1122


Q ss_pred             cccccccccccccccc-------CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhh-----------------hh-c-
Q psy3253         140 TVIGTPFWMAPEVIQE-------IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAI-----------------FM-I-  193 (251)
Q Consensus       140 ~~~~~~~y~aPE~~~~-------~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~-----------------~~-~-  193 (251)
                      ...||+.|+|||++.+       ..++.++|||||||++|+|++|..||.........                 .. + 
T Consensus       187 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (336)
T 3g2f_A          187 SEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVS  266 (336)
T ss_dssp             CTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHT
T ss_pred             cCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhc
Confidence            3458999999999976       45677899999999999999997665322111000                 00 0 


Q ss_pred             CCCCCCCC----CCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         194 PTKPPPSF----REPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       194 ~~~~~~~~----~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .....+.+    .....+++++.++|.+||+.||++|||++|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~  311 (336)
T 3g2f_A          267 REKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEE  311 (336)
T ss_dssp             TSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHH
Confidence            01111111    111123457999999999999999999999953

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=6.5e-38  Score=263.53  Aligned_cols=200  Identities=25%  Similarity=0.388  Sum_probs=159.6

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR--KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~--~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      ++++||||+++++++.+....++||||+++++|.+++...  ...+++..+..++.|++.||.|||++|++|||||    
T Consensus        85 ~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlk----  160 (307)
T 2nru_A           85 AKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIK----  160 (307)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC----
T ss_pred             HhcCCCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCC----
Confidence            4679999999999999999999999999999999999633  3569999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--cccccccccccccccccccCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                   |+||+++.++.++|+|||++........  ......+++.|+|||.+.+ .
T Consensus       161 -----------------------------p~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~  210 (307)
T 2nru_A          161 -----------------------------SANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-E  210 (307)
T ss_dssp             -----------------------------GGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-E
T ss_pred             -----------------------------HHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-C
Confidence                                         8899999999999999999875543211  1233467899999998865 4


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc----CCCC--------CCCCCCCCCCCHHHHHHHHHhhhcCcCc
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI----PTKP--------PPSFREPDVWTPEFIDFVSRCLVKNPEE  225 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~----~~~~--------~~~~~~~~~~~~~~~~li~~~l~~~p~~  225 (251)
                      ++.++||||||+++|+|++|..||...........+    ....        ......+...+..+.+++.+||+.||++
T Consensus       211 ~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~  290 (307)
T 2nru_A          211 ITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNK  290 (307)
T ss_dssp             ECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTT
T ss_pred             CCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCccc
Confidence            789999999999999999999999654432211110    0000        0001112334567899999999999999


Q ss_pred             cCCHHHHhcC
Q psy3253         226 RATASEMLNH  235 (251)
Q Consensus       226 Rps~~evl~h  235 (251)
                      |||++|++++
T Consensus       291 Rps~~~l~~~  300 (307)
T 2nru_A          291 RPDIKKVQQL  300 (307)
T ss_dssp             SCCHHHHHHH
T ss_pred             CcCHHHHHHH
Confidence            9999999853

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=100.00  E-value=5.3e-38  Score=262.51  Aligned_cols=198  Identities=19%  Similarity=0.260  Sum_probs=156.3

Q ss_pred             CCCCCccceeeeeE-eeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           3 QCDSPYVVKYYGSY-FKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         3 ~l~hpniv~l~~~~-~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      +++|++++..+..+ ..+...++||||+ +++|.+++......+++..+..++.|++.||.|||++|++|||||      
T Consensus        60 ~l~~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlk------  132 (296)
T 3uzp_A           60 MMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVK------  132 (296)
T ss_dssp             HHTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC------
T ss_pred             HhhcCCCCCccccccCCCCceEEEEEec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCC------
Confidence            46677766665544 6677889999999 889999998667789999999999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceec---CCCCCeEecccccccccCcccc-------ccccccccccccccc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL---NTEGHAKLADFGVAGQLTDTMA-------KRNTVIGTPFWMAPE  151 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~---~~~~~~kl~dfg~~~~~~~~~~-------~~~~~~~~~~y~aPE  151 (251)
                                                 |+||++   +.++.+||+|||++........       ......+++.|+|||
T Consensus       133 ---------------------------p~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  185 (296)
T 3uzp_A          133 ---------------------------PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASIN  185 (296)
T ss_dssp             ---------------------------GGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHH
T ss_pred             ---------------------------HHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChh
Confidence                                       777777   4678899999999976544322       123456889999999


Q ss_pred             ccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc---hhhhhcCCC--CCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         152 VIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPM---RAIFMIPTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       152 ~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      .+.+..++.++|||||||++|+|++|..||.+....   .....+...  ..+.......+++++.+++.+||+.||++|
T Consensus       186 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R  265 (296)
T 3uzp_A          186 THLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDK  265 (296)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCC
T ss_pred             hhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcC
Confidence            999989999999999999999999999999754321   111111110  000001125679999999999999999999


Q ss_pred             CCHHHHhc
Q psy3253         227 ATASEMLN  234 (251)
Q Consensus       227 ps~~evl~  234 (251)
                      ||++|+++
T Consensus       266 ps~~~l~~  273 (296)
T 3uzp_A          266 PDYSYLRQ  273 (296)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence            99999975

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=263.38  Aligned_cols=199  Identities=25%  Similarity=0.443  Sum_probs=160.8

Q ss_pred             CCCCCCCccceeeeeEeeC--CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN--TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~--~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++...  ...++||||+++++|.+++......+++..+..++.|++.||.|||++|++|||||   
T Consensus        96 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dik---  172 (326)
T 2w1i_A           96 LKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLA---  172 (326)
T ss_dssp             HHTCCCTTBCCEEEEECC----CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCC---
T ss_pred             HHhCCCCCeeeEEEEEEecCCCceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCC---
Confidence            3578999999999998654  37899999999999999998666779999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc---cccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK---RNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~  155 (251)
                                                    |+||+++.++.++|+|||++.........   .....++..|+|||.+.+
T Consensus       173 ------------------------------p~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  222 (326)
T 2w1i_A          173 ------------------------------TRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTE  222 (326)
T ss_dssp             ------------------------------GGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHH
T ss_pred             ------------------------------cceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcC
Confidence                                          88999988899999999999765433211   122345677999999988


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcc----------------hhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhh
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPM----------------RAIFMIPTKPPPSFREPDVWTPEFIDFVSRCL  219 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l  219 (251)
                      ..++.++||||||+++|+|++|..||......                .....+....  ....+..+++++.++|.+||
T Consensus       223 ~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl  300 (326)
T 2w1i_A          223 SKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNG--RLPRPDGCPDEIYMIMTECW  300 (326)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTC--CCCCCTTCCHHHHHHHHHHS
T ss_pred             CCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCC--CCCCCCcccHHHHHHHHHHc
Confidence            88999999999999999999999888532110                0011111111  22335678999999999999


Q ss_pred             hcCcCccCCHHHHhc
Q psy3253         220 VKNPEERATASEMLN  234 (251)
Q Consensus       220 ~~~p~~Rps~~evl~  234 (251)
                      +.||++|||++|+++
T Consensus       301 ~~dP~~Rps~~el~~  315 (326)
T 2w1i_A          301 NNNVNQRPSFRDLAL  315 (326)
T ss_dssp             CSSGGGSCCHHHHHH
T ss_pred             CCChhhCcCHHHHHH
Confidence            999999999999984

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=266.86  Aligned_cols=199  Identities=20%  Similarity=0.281  Sum_probs=157.7

Q ss_pred             CCCCCccce---------------eeeeEee-CCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHH
Q psy3253           3 QCDSPYVVK---------------YYGSYFK-NTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLH   65 (251)
Q Consensus         3 ~l~hpniv~---------------l~~~~~~-~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH   65 (251)
                      +++||||++               +++++.. +...|+||||+ +++|.+++... ...+++..++.++.||+.||.|||
T Consensus        98 ~l~h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH  176 (352)
T 2jii_A           98 RAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH  176 (352)
T ss_dssp             HHCCHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            457777776               6777766 67899999999 89999999743 368999999999999999999999


Q ss_pred             hCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCC--CeEecccccccccCcccc-------
Q psy3253          66 LRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG--HAKLADFGVAGQLTDTMA-------  136 (251)
Q Consensus        66 ~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~--~~kl~dfg~~~~~~~~~~-------  136 (251)
                      ++|++|||||                                 |+||+++.++  .++|+|||+++.......       
T Consensus       177 ~~~ivH~Dik---------------------------------p~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~  223 (352)
T 2jii_A          177 ENEYVHGNVT---------------------------------AENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEG  223 (352)
T ss_dssp             HTTCBCSCCC---------------------------------GGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTT
T ss_pred             hCCccCCCCC---------------------------------HHHEEEcCCCCceEEEecCcceeeccCCCcccccccc
Confidence            9999999988                                 8888888887  899999999976543221       


Q ss_pred             cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCC-cchhhhh-c---CCCCC---CCCCCCCCCC
Q psy3253         137 KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIH-PMRAIFM-I---PTKPP---PSFREPDVWT  208 (251)
Q Consensus       137 ~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~-~~~~~~~-~---~~~~~---~~~~~~~~~~  208 (251)
                      ......+|+.|+|||++.+..++.++|||||||++|+|++|..||.... ....... .   .....   ........++
T Consensus       224 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (352)
T 2jii_A          224 SRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPS  303 (352)
T ss_dssp             SSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCEECCC
T ss_pred             ccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhhhhhccccCCCc
Confidence            1133468899999999999899999999999999999999999996543 1111111 1   11111   0111123568


Q ss_pred             HHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         209 PEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       209 ~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      +++.+++.+||+.||++|||++|+++.
T Consensus       304 ~~l~~li~~~l~~dp~~Rps~~~l~~~  330 (352)
T 2jii_A          304 ETLQKYLKVVMALTYEEKPPYAMLRNN  330 (352)
T ss_dssp             HHHHHHHHHHHTCCTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCChhhCCCHHHHHHH
Confidence            999999999999999999999999753

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=2.7e-37  Score=266.25  Aligned_cols=193  Identities=16%  Similarity=0.141  Sum_probs=153.7

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH----hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL----RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~----~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      ...|+||+++++++...+..|+||||+++|+|.+++..    ....+++..++.++.||+.||.|||++||+|||||   
T Consensus       123 ~~~~~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiK---  199 (365)
T 3e7e_A          123 PSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIK---  199 (365)
T ss_dssp             GGGGGGBCCEEEEEECSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCS---
T ss_pred             hhhhhhhhhhheeeecCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCC---
Confidence            34599999999999999999999999999999999974    34679999999999999999999999999999999   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCC-----------CCCeEecccccccccC--ccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-----------EGHAKLADFGVAGQLT--DTMAKRNTVIGTP  145 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~-----------~~~~kl~dfg~~~~~~--~~~~~~~~~~~~~  145 (251)
                                                    |+||+++.           ++.+||+|||+++...  ..........||+
T Consensus       200 ------------------------------p~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~  249 (365)
T 3e7e_A          200 ------------------------------PDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETS  249 (365)
T ss_dssp             ------------------------------GGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTT
T ss_pred             ------------------------------HHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCC
Confidence                                          66666655           7889999999996543  1222334456899


Q ss_pred             ccccccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCc
Q psy3253         146 FWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEE  225 (251)
Q Consensus       146 ~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  225 (251)
                      .|+|||++.+..++.++|||||||++|+|++|+.||.........  +...    + .....++.+.+++.+||+.+|.+
T Consensus       250 ~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~--~~~~----~-~~~~~~~~~~~~~~~~l~~~p~~  322 (365)
T 3e7e_A          250 GFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECK--PEGL----F-RRLPHLDMWNEFFHVMLNIPDCH  322 (365)
T ss_dssp             SCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTEEE--ECSC----C-TTCSSHHHHHHHHHHHHCCCCTT
T ss_pred             CCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCCcee--echh----c-cccCcHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999999999999999543222111  1111    1 01124678899999999999999


Q ss_pred             cCCHHHHhcC
Q psy3253         226 RATASEMLNH  235 (251)
Q Consensus       226 Rps~~evl~h  235 (251)
                      |++..+.+.+
T Consensus       323 r~~~~~~l~~  332 (365)
T 3e7e_A          323 HLPSLDLLRQ  332 (365)
T ss_dssp             CCCCHHHHHH
T ss_pred             cchHHHHHHH
Confidence            9655444443

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.7e-37  Score=261.55  Aligned_cols=196  Identities=25%  Similarity=0.426  Sum_probs=142.3

Q ss_pred             CC-CCCccceeeeeEe--------eCCeEEEEEEccCCCCHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHHHhCC--c
Q psy3253           3 QC-DSPYVVKYYGSYF--------KNTDLWIVMEYCGAGSVSDIMRL--RKKTLSEDEIATILCDTLKGLEYLHLRR--K   69 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~--------~~~~~~lv~e~~~~gsL~~~~~~--~~~~l~~~~~~~~~~~i~~~l~~LH~~~--i   69 (251)
                      ++ +||||+++++++.        ....++++|||+. |+|.+++..  ....+++..++.++.||+.||.|||++|  +
T Consensus        81 ~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~i  159 (337)
T 3ll6_A           81 KLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPI  159 (337)
T ss_dssp             HHTTSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCC
T ss_pred             HhccCCChhhccccccccccccccCCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            44 5999999999994        3445899999995 699998863  3467999999999999999999999999  9


Q ss_pred             cccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc------------
Q psy3253          70 IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK------------  137 (251)
Q Consensus        70 iH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~------------  137 (251)
                      +|||||                                 |+||+++.++.++|+|||++.........            
T Consensus       160 vH~Dik---------------------------------p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~  206 (337)
T 3ll6_A          160 IHRDLK---------------------------------VENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEE  206 (337)
T ss_dssp             BCCCCC---------------------------------GGGCEECTTSCEEBCCCTTCBCCSSCC--------------
T ss_pred             EEccCC---------------------------------cccEEECCCCCEEEecCccceeccccCcccccccccccchh
Confidence            999988                                 88999999999999999999765432111            


Q ss_pred             cccccccccccccccc---ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHH
Q psy3253         138 RNTVIGTPFWMAPEVI---QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDF  214 (251)
Q Consensus       138 ~~~~~~~~~y~aPE~~---~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  214 (251)
                      .....+|+.|+|||++   .+..++.++|||||||++|+|++|..||.+..........     .........+..+.++
T Consensus       207 ~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l  281 (337)
T 3ll6_A          207 EITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIVNGK-----YSIPPHDTQYTVFHSL  281 (337)
T ss_dssp             -----------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-----------------CCCCTTCCSSGGGHHH
T ss_pred             hccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhhcCc-----ccCCcccccchHHHHH
Confidence            1134578899999998   5677899999999999999999999999765443322211     1222345668889999


Q ss_pred             HHHhhhcCcCccCCHHHHhcChh
Q psy3253         215 VSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       215 i~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.+||+.||++|||++|++++-.
T Consensus       282 i~~~l~~~p~~Rps~~e~l~~l~  304 (337)
T 3ll6_A          282 IRAMLQVNPEERLSIAEVVHQLQ  304 (337)
T ss_dssp             HHHHSCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHccCChhhCcCHHHHHHHHH
Confidence            99999999999999999998753

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.3e-38  Score=275.01  Aligned_cols=200  Identities=24%  Similarity=0.408  Sum_probs=155.1

Q ss_pred             CCCCCCccceeeeeEeeCC--eEEEEEEccCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           2 QQCDSPYVVKYYGSYFKNT--DLWIVMEYCGAGSVSDIMRLRK--KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~--~~~lv~e~~~~gsL~~~~~~~~--~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      ++++||||+++++++....  ..++||||+++|+|.+++....  ..+++..++.++.||+.||.|||++|++|||||  
T Consensus        62 ~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlk--  139 (396)
T 4eut_A           62 KKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIK--  139 (396)
T ss_dssp             HHCCCTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC--
T ss_pred             HhcCCCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcC--
Confidence            4689999999999998654  7899999999999999996332  339999999999999999999999999999999  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceec----CCCCCeEecccccccccCccccccccccccccccccccc
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL----NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~----~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  153 (251)
                                                     |+||++    +.++.+||+|||+++...... ......||+.|+|||++
T Consensus       140 -------------------------------p~NIll~~~~~~~~~~kL~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~  187 (396)
T 4eut_A          140 -------------------------------PGNIMRVIGEDGQSVYKLTDFGAARELEDDE-QFVSLYGTEEYLHPDMY  187 (396)
T ss_dssp             -------------------------------GGGEEEEECTTSCEEEEECCGGGCEECCCGG-GSSCSSSCCTTCCHHHH
T ss_pred             -------------------------------HHHEEEeecCCCceeEEEecCCCceEccCCC-ccccccCCccccCHHHh
Confidence                                           667766    566679999999997655432 23345689999999998


Q ss_pred             cc--------CCCCcchhHHHHHHHHHHHHhCCCCCCCCCc----chhhhhcCCCCCC------------------CC--
Q psy3253         154 QE--------IGYDCVADMWSLGITALEMAEGKPPYGDIHP----MRAIFMIPTKPPP------------------SF--  201 (251)
Q Consensus       154 ~~--------~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~----~~~~~~~~~~~~~------------------~~--  201 (251)
                      .+        ..++.++|||||||++|+|++|..||.....    ......+....+.                  ..  
T Consensus       188 ~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  267 (396)
T 4eut_A          188 ERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPV  267 (396)
T ss_dssp             HHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCT
T ss_pred             hccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCc
Confidence            64        5678899999999999999999999953221    1222222111111                  00  


Q ss_pred             --CCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         202 --REPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       202 --~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                        .....+++.+.+++.+||+.||++|||++|++++
T Consensus       268 ~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~  303 (396)
T 4eut_A          268 SCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAE  303 (396)
T ss_dssp             TCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHH
T ss_pred             ccccchHHHhhchHHHHHhhccChhhhccHHHHHHH
Confidence              1112235678999999999999999999998654

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=100.00  E-value=9.6e-37  Score=259.96  Aligned_cols=198  Identities=25%  Similarity=0.379  Sum_probs=155.5

Q ss_pred             CCCCCccceeeeeEeeCC----eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH--------hCCcc
Q psy3253           3 QCDSPYVVKYYGSYFKNT----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH--------LRRKI   70 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~----~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH--------~~~ii   70 (251)
                      +++||||+++++++....    ..++||||+.+|+|.+++..  ..+++..+..++.|++.||.|||        +.|++
T Consensus        92 ~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~iv  169 (342)
T 1b6c_B           92 MLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIA  169 (342)
T ss_dssp             CCCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEE
T ss_pred             hcCCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCee
Confidence            379999999999998765    79999999999999999963  57999999999999999999999        89999


Q ss_pred             ccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc----cccccccccc
Q psy3253          71 HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA----KRNTVIGTPF  146 (251)
Q Consensus        71 H~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~~~  146 (251)
                      |||||                                 |+||+++.++.++|+|||++........    ......+|+.
T Consensus       170 H~Dlk---------------------------------p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~  216 (342)
T 1b6c_B          170 HRDLK---------------------------------SKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKR  216 (342)
T ss_dssp             CSCCS---------------------------------GGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGG
T ss_pred             eCCCC---------------------------------HHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcc
Confidence            99988                                 8899999999999999999976543221    1234468899


Q ss_pred             cccccccccC------CCCcchhHHHHHHHHHHHHhC----------CCCCCCCCcc-----hhhhhcCCC-CCCCCC--
Q psy3253         147 WMAPEVIQEI------GYDCVADMWSLGITALEMAEG----------KPPYGDIHPM-----RAIFMIPTK-PPPSFR--  202 (251)
Q Consensus       147 y~aPE~~~~~------~~~~~~DvwslG~~l~~l~~g----------~~p~~~~~~~-----~~~~~~~~~-~~~~~~--  202 (251)
                      |+|||++.+.      .++.++|||||||++|+|++|          ..||......     .....+... ..+...  
T Consensus       217 y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (342)
T 1b6c_B          217 YMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNR  296 (342)
T ss_dssp             GCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG
T ss_pred             cCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHHhCCCCccc
Confidence            9999999764      234689999999999999999          7788554221     111111111 111111  


Q ss_pred             -CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         203 -EPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       203 -~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                       .....+..+.+++.+||+.||++|||++|++++
T Consensus       297 ~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~  330 (342)
T 1b6c_B          297 WQSCEALRVMAKIMRECWYANGAARLTALRIKKT  330 (342)
T ss_dssp             GGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHhccChhhCCCHHHHHHH
Confidence             011234678999999999999999999999965

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=100.00  E-value=6.9e-37  Score=272.67  Aligned_cols=198  Identities=18%  Similarity=0.240  Sum_probs=157.7

Q ss_pred             CCCC-CccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           3 QCDS-PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         3 ~l~h-pniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      .++| +++..+..++......++||||+ +++|.+++......+++..++.++.||+.||.|||++||+|||||      
T Consensus        58 ~L~~~~~i~~i~~~~~~~~~~~lvme~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIK------  130 (483)
T 3sv0_A           58 ILQGGTGIPNVRWFGVEGDYNVLVMDLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIK------  130 (483)
T ss_dssp             HTTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC------
T ss_pred             HhcCCCCCCeEEEEEeeCCEEEEEEECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccC------
Confidence            4555 56666677777888999999999 889999998667889999999999999999999999999999998      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceec---CCCCCeEecccccccccCccccc-------cccccccccccccc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL---NTEGHAKLADFGVAGQLTDTMAK-------RNTVIGTPFWMAPE  151 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~---~~~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~~y~aPE  151 (251)
                                                 |+||++   +.++.+||+|||+++........       .....||+.|+|||
T Consensus       131 ---------------------------P~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE  183 (483)
T 3sv0_A          131 ---------------------------PDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVN  183 (483)
T ss_dssp             ---------------------------GGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHH
T ss_pred             ---------------------------cceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHH
Confidence                                       778887   57788999999999865533221       22456899999999


Q ss_pred             ccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh---hhhcCCCC--CCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         152 VIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA---IFMIPTKP--PPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       152 ~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      ++.+..++.++|||||||++|+|++|..||.+......   ...+....  ......+..++.++.+++.+||+.+|++|
T Consensus       184 ~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP~~R  263 (483)
T 3sv0_A          184 THLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRFDDK  263 (483)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCTTCC
T ss_pred             HhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCChhhC
Confidence            99999999999999999999999999999976543211   11111000  00001125678999999999999999999


Q ss_pred             CCHHHHhc
Q psy3253         227 ATASEMLN  234 (251)
Q Consensus       227 ps~~evl~  234 (251)
                      |+++++++
T Consensus       264 Ps~~el~~  271 (483)
T 3sv0_A          264 PDYSYLKR  271 (483)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence            99998864

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=4.2e-36  Score=263.15  Aligned_cols=176  Identities=14%  Similarity=0.143  Sum_probs=146.3

Q ss_pred             eEEEEEEccCCCCHHHHHHH------hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcccccccccccccc
Q psy3253          21 DLWIVMEYCGAGSVSDIMRL------RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCN   94 (251)
Q Consensus        21 ~~~lv~e~~~~gsL~~~~~~------~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~   94 (251)
                      ..+++|+++ +++|.++++.      .+..+++..++.++.|++.||.|||++||+|||||                   
T Consensus       179 ~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrDiK-------------------  238 (413)
T 3dzo_A          179 SRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLR-------------------  238 (413)
T ss_dssp             SEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCC-------------------
T ss_pred             ceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcc-------------------
Confidence            478888887 5799999842      13457788999999999999999999999999988                   


Q ss_pred             ccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccc----------ccCCCCcchhH
Q psy3253          95 VITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI----------QEIGYDCVADM  164 (251)
Q Consensus        95 ~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~----------~~~~~~~~~Dv  164 (251)
                                    |+||+++.++.+||+|||+++.....   .....| +.|+|||++          .+..++.++||
T Consensus       239 --------------p~NILl~~~~~~kL~DFG~a~~~~~~---~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~Dv  300 (413)
T 3dzo_A          239 --------------PVDIVLDQRGGVFLTGFEHLVRDGAS---AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDT  300 (413)
T ss_dssp             --------------GGGEEECTTCCEEECCGGGCEETTEE---ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHH
T ss_pred             --------------cceEEEecCCeEEEEeccceeecCCc---cccCCC-CceeCchhhhccccccccccCcCCCchhhH
Confidence                          89999999999999999998765433   233456 889999999          55568889999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         165 WSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       165 wslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      |||||++|+|++|+.||...+.......+..       ....+++++.+||.+||+.||++|||++|+++||||+..
T Consensus       301 wSlGvil~elltg~~Pf~~~~~~~~~~~~~~-------~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~~~~~~~  370 (413)
T 3dzo_A          301 WTLGLAIYWIWCADLPNTDDAALGGSEWIFR-------SCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQL  370 (413)
T ss_dssp             HHHHHHHHHHHHSSCCCCTTGGGSCSGGGGS-------SCCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCcchhhhHHHHHh-------hcccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHHHH
Confidence            9999999999999999977655443333322       234578999999999999999999999999999999874

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.4e-35  Score=273.32  Aligned_cols=189  Identities=23%  Similarity=0.333  Sum_probs=153.1

Q ss_pred             CCCCCCCccceeeeeEeeCCe-----EEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTD-----LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~-----~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      |++++||||+++++++.....     .|+||||++|++|.+++.   ..+++.+++.++.||+.||.|||++||+|||||
T Consensus       133 l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~---~~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlk  209 (681)
T 2pzi_A          133 LAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKG---QKLPVAEAIAYLLEILPALSYLHSIGLVYNDLK  209 (681)
T ss_dssp             GGGCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS
T ss_pred             HHhcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHCCCeecccC
Confidence            467899999999999987655     799999999999998875   379999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.+ .+||+|||+++.....    ....||+.|+|||++.+
T Consensus       210 ---------------------------------p~NIll~~~-~~kl~DFG~a~~~~~~----~~~~gt~~y~aPE~~~~  251 (681)
T 2pzi_A          210 ---------------------------------PENIMLTEE-QLKLIDLGAVSRINSF----GYLYGTPGFQAPEIVRT  251 (681)
T ss_dssp             ---------------------------------GGGEEECSS-CEEECCCTTCEETTCC----SCCCCCTTTSCTTHHHH
T ss_pred             ---------------------------------hHHeEEeCC-cEEEEecccchhcccC----CccCCCccccCHHHHcC
Confidence                                             778888765 7999999999765432    34568999999999876


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      . ++.++|||||||++|+|++|.+||.+.....    +    + ........++.+.++|.+||+.||++||+..+.+.|
T Consensus       252 ~-~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~----~----~-~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~  321 (681)
T 2pzi_A          252 G-PTVATDIYTVGRTLAALTLDLPTRNGRYVDG----L----P-EDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSA  321 (681)
T ss_dssp             C-SCHHHHHHHHHHHHHHHHSCCCEETTEECSS----C----C-TTCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHH
T ss_pred             C-CCCceehhhhHHHHHHHHhCCCCCccccccc----c----c-ccccccccCHHHHHHHhhhccCChhhCCCHHHHHHH
Confidence            5 4889999999999999999998886422111    0    0 100111246789999999999999999999999999


Q ss_pred             hhhhh
Q psy3253         236 EFIQR  240 (251)
Q Consensus       236 p~~~~  240 (251)
                      +|+.-
T Consensus       322 ~l~~~  326 (681)
T 2pzi_A          322 QLTGV  326 (681)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98853

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=100.00  E-value=1.8e-36  Score=258.28  Aligned_cols=207  Identities=19%  Similarity=0.218  Sum_probs=140.4

Q ss_pred             CCccceeeeeEee-------------CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH-hCCccc
Q psy3253           6 SPYVVKYYGSYFK-------------NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH-LRRKIH   71 (251)
Q Consensus         6 hpniv~l~~~~~~-------------~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH-~~~iiH   71 (251)
                      ||||++++++|.+             ....|+||||+.+|++.+.+.  +..+++..++.++.||+.||.||| ++||+|
T Consensus       108 hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~--~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH  185 (336)
T 2vuw_A          108 PPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMR--TKLSSLATAKSILHQLTASLAVAEASLRFEH  185 (336)
T ss_dssp             CHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGT--TTCCCHHHHHHHHHHHHHHHHHHHHHHCCBC
T ss_pred             cHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHhCCEeE
Confidence            5555555555543             678999999999997665553  367899999999999999999999 999999


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceec-CCCCCeEecccccccccCcccccccccccccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL-NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAP  150 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~-~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  150 (251)
                      |||||+|||+..+........              ........ .....+||+|||+++....     ....||+.|+||
T Consensus       186 rDlKp~NILl~~~~~~~~~~~--------------~~~~~~~~~~~~~~vkL~DFG~a~~~~~-----~~~~gt~~y~aP  246 (336)
T 2vuw_A          186 RDLHWGNVLLKKTSLKKLHYT--------------LNGKSSTIPSCGLQVSIIDYTLSRLERD-----GIVVFCDVSMDE  246 (336)
T ss_dssp             SCCCGGGEEEEECSCSEEEEE--------------ETTEEEEEECTTEEEEECCCTTCBEEET-----TEEECCCCTTCS
T ss_pred             CCCCHHHEEEeccCCcceeee--------------ccCccccccCCCceEEEeeccccEecCC-----CcEEEeecccCh
Confidence            999955555542210000000              00000000 1112799999999976543     234789999999


Q ss_pred             cccccCCCCcchhHHHHHHH-HHHHHhCCCCCCCCC----cchhhh-hcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcC
Q psy3253         151 EVIQEIGYDCVADMWSLGIT-ALEMAEGKPPYGDIH----PMRAIF-MIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE  224 (251)
Q Consensus       151 E~~~~~~~~~~~DvwslG~~-l~~l~~g~~p~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~  224 (251)
                      |++.+.. +.++||||++++ .+++++|..||.+..    ...... ............+..+++++.+||.+||+.|  
T Consensus       247 E~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d--  323 (336)
T 2vuw_A          247 DLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS--  323 (336)
T ss_dssp             GGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS--
T ss_pred             hhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC--
Confidence            9998766 889999998777 777888999985421    001111 1111111111112346788999999999976  


Q ss_pred             ccCCHHHHh-cChhhh
Q psy3253         225 ERATASEML-NHEFIQ  239 (251)
Q Consensus       225 ~Rps~~evl-~hp~~~  239 (251)
                         |++|+| +||||+
T Consensus       324 ---sa~e~l~~Hp~f~  336 (336)
T 2vuw_A          324 ---SATDLLCQHSLFK  336 (336)
T ss_dssp             ---SHHHHHHHCGGGC
T ss_pred             ---CHHHHHhcCCCcC
Confidence               999999 999995

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=100.00  E-value=5.3e-34  Score=238.18  Aligned_cols=169  Identities=14%  Similarity=0.103  Sum_probs=138.2

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++++++.+++..|+||||++|++|.++++  . .....++..++.|++.||.|||++|++|||||      
T Consensus        86 ~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g~~L~~~l~--~-~~~~~~~~~i~~ql~~aL~~lH~~givH~Dik------  156 (286)
T 3uqc_A           86 SRIDKPGVARVLDVVHTRAGGLVVAEWIRGGSLQEVAD--T-SPSPVGAIRAMQSLAAAADAAHRAGVALSIDH------  156 (286)
T ss_dssp             HTCCCTTBCCEEEEEEETTEEEEEEECCCEEEHHHHHT--T-CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCS------
T ss_pred             hcCCCCCcceeeEEEEECCcEEEEEEecCCCCHHHHHh--c-CCChHHHHHHHHHHHHHHHHHHHCCCccCCCC------
Confidence            47899999999999999999999999999999999985  2 34666788999999999999999999999988      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCV  161 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  161 (251)
                                                 |+||+++.++.++|++++                    |++       +++.+
T Consensus       157 ---------------------------p~NIll~~~g~~kl~~~~--------------------~~~-------~~~~~  182 (286)
T 3uqc_A          157 ---------------------------PSRVRVSIDGDVVLAYPA--------------------TMP-------DANPQ  182 (286)
T ss_dssp             ---------------------------GGGEEEETTSCEEECSCC--------------------CCT-------TCCHH
T ss_pred             ---------------------------cccEEEcCCCCEEEEecc--------------------ccC-------CCCch
Confidence                                       889999999999988543                    222       36889


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhh---hcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIF---MIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      +|||||||++|+|++|+.||.+.+......   ..... ..........+++++.++|.+||+.||++| |++|+++
T Consensus       183 ~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~  258 (286)
T 3uqc_A          183 DDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLN  258 (286)
T ss_dssp             HHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHH
Confidence            999999999999999999998765543221   11111 111111235689999999999999999999 9999985

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.97  E-value=1.7e-31  Score=242.34  Aligned_cols=141  Identities=18%  Similarity=0.225  Sum_probs=106.3

Q ss_pred             CCCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |+++ .|+||++++++++++...||||||++|++|.+++. .++.+++.   .++.||+.||.|+|++||||||||    
T Consensus       295 l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~-~~~~l~~~---~I~~QIl~AL~ylH~~GIIHRDIK----  366 (569)
T 4azs_A          295 LTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLA-AGEEIDRE---KILGSLLRSLAALEKQGFWHDDVR----  366 (569)
T ss_dssp             HHSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHH-TTCCCCHH---HHHHHHHHHHHHHHHTTCEESCCC----
T ss_pred             HHhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHH-hCCCCCHH---HHHHHHHHHHHHHHHCCceeccCc----
Confidence            3466 79999999999999999999999999999999997 56677765   478899999999999999999998    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.+||+|||+++.............||+.|+|||++.+ .+.
T Consensus       367 -----------------------------PeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g-~~~  416 (569)
T 4azs_A          367 -----------------------------PWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAE-NKS  416 (569)
T ss_dssp             -----------------------------GGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC------
T ss_pred             -----------------------------hHhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHHHhCC-CCC
Confidence                                         99999999999999999999876655455556779999999999976 456


Q ss_pred             cchhHHHHHHHHHHHHhCCC
Q psy3253         160 CVADMWSLGITALEMAEGKP  179 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~  179 (251)
                      .++|+||+|++++++.++..
T Consensus       417 ~~~d~~s~g~~~~~l~~~~~  436 (569)
T 4azs_A          417 WNGFWRSAPVHPFNLPQPWS  436 (569)
T ss_dssp             ------------CCCCTTHH
T ss_pred             Ccccccccccchhhhccccc
Confidence            78999999999887765543

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.87  E-value=9.8e-24  Score=190.38  Aligned_cols=136  Identities=19%  Similarity=0.240  Sum_probs=112.9

Q ss_pred             CCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           2 QQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         2 ~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      ++++||||+++..++......|+||||+++++|.+++..         ++.++.|++.||.|||++||+|||||      
T Consensus       394 ~~l~h~nIv~~~~~~~~~~~~~lVmE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH~~gIiHrDiK------  458 (540)
T 3en9_A          394 ALVKDFGIPAPYIFDVDLDNKRIMMSYINGKLAKDVIED---------NLDIAYKIGEIVGKLHKNDVIHNDLT------  458 (540)
T ss_dssp             HHGGGGTCCCCCEEEEETTTTEEEEECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHHHTTEECTTCC------
T ss_pred             HhcCCCCcCceEEEEEeCCccEEEEECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHHHCcCccCCCC------
Confidence            467999999666666677778999999999999999862         66899999999999999999999999      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-------ccccccccccccccccc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-------RNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-------~~~~~~~~~y~aPE~~~  154 (251)
                                                 |+||+++.  .+||+|||+++........       .....||+.|+|||++.
T Consensus       459 ---------------------------p~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~  509 (540)
T 3en9_A          459 ---------------------------TSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWE  509 (540)
T ss_dssp             ---------------------------TTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ---------------------------HHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHH
Confidence                                       77888877  8999999999876543221       13456899999999997


Q ss_pred             c--CCCCcchhHHHHHHHHHHHHhCCCCC
Q psy3253         155 E--IGYDCVADMWSLGITALEMAEGKPPY  181 (251)
Q Consensus       155 ~--~~~~~~~DvwslG~~l~~l~~g~~p~  181 (251)
                      .  ..|+..+|+|+..+-..+.+.++.+|
T Consensus       510 ~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          510 RFLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence            6  66888899999999888877766555

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.64  E-value=2.7e-17  Score=136.68  Aligned_cols=89  Identities=18%  Similarity=0.144  Sum_probs=71.1

Q ss_pred             ceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccc
Q psy3253          10 VKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYC   89 (251)
Q Consensus        10 v~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~   89 (251)
                      +++.+++.. +..|+||||++|++|.+ +.       ......++.|++.||.|||++|++|||||              
T Consensus       164 ~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~-------~~~~~~i~~qi~~~l~~lH~~giiHrDlk--------------  220 (282)
T 1zar_A          164 LAVPKVYAW-EGNAVLMELIDAKELYR-VR-------VENPDEVLDMILEEVAKFYHRGIVHGDLS--------------  220 (282)
T ss_dssp             SSSCCEEEE-ETTEEEEECCCCEEGGG-CC-------CSCHHHHHHHHHHHHHHHHHTTEECSCCS--------------
T ss_pred             CCcCeEEec-cceEEEEEecCCCcHHH-cc-------hhhHHHHHHHHHHHHHHHHHCCCEeCCCC--------------
Confidence            666665544 45699999999999977 32       12345799999999999999999999988              


Q ss_pred             cccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          90 SIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                                         |+||+++ ++.++|+|||+++.             +..+.|||.+.
T Consensus       221 -------------------p~NILl~-~~~vkl~DFG~a~~-------------~~~~~a~e~l~  252 (282)
T 1zar_A          221 -------------------QYNVLVS-EEGIWIIDFPQSVE-------------VGEEGWREILE  252 (282)
T ss_dssp             -------------------TTSEEEE-TTEEEECCCTTCEE-------------TTSTTHHHHHH
T ss_pred             -------------------HHHEEEE-CCcEEEEECCCCeE-------------CCCCCHHHHHH
Confidence                               8899998 88999999999853             23356787764

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.34  E-value=8.6e-14  Score=113.94  Aligned_cols=72  Identities=24%  Similarity=0.367  Sum_probs=58.1

Q ss_pred             eEEEEEEccCC-C----CHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH-hCCccccCCCCCCCCcccccccccccccc
Q psy3253          21 DLWIVMEYCGA-G----SVSDIMRLRKKTLSEDEIATILCDTLKGLEYLH-LRRKIHRDIKAGSGTLVYDRLDYCSIKCN   94 (251)
Q Consensus        21 ~~~lv~e~~~~-g----sL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH-~~~iiH~dik~~Ni~~~~~~~~~~~~~~~   94 (251)
                      ..++||||+.+ |    +|.++..    ..++..+..++.|++.||.+|| +.|++|||||                   
T Consensus       142 ~~~lVmE~~g~~g~~~~~L~~~~~----~~~~~~~~~i~~qi~~~l~~lH~~~givHrDlk-------------------  198 (258)
T 1zth_A          142 KNVLLMEFIGEDELPAPTLVELGR----ELKELDVEGIFNDVVENVKRLYQEAELVHADLS-------------------  198 (258)
T ss_dssp             TTEEEEECCEETTEECCBHHHHGG----GGGGSCHHHHHHHHHHHHHHHHHTSCEECSSCS-------------------
T ss_pred             CCEEEEEecCCCCCccccHHHHhh----ccChHHHHHHHHHHHHHHHHHHHHCCEEeCCCC-------------------
Confidence            46899999942 3    7776543    1235577889999999999999 9999999988                   


Q ss_pred             ccchhhhhhhhhcccCceecCCCCCeEeccccccccc
Q psy3253          95 VITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL  131 (251)
Q Consensus        95 ~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~  131 (251)
                                    |+||+++.  .++|+|||++...
T Consensus       199 --------------p~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          199 --------------EYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             --------------TTSEEESS--SEEECCCTTCEET
T ss_pred             --------------HHHEEEcC--cEEEEECcccccC
Confidence                          77888877  7999999999654

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.12  E-value=6.3e-12  Score=108.10  Aligned_cols=71  Identities=18%  Similarity=0.154  Sum_probs=49.6

Q ss_pred             CCCccceeeeeEeeCC------eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           5 DSPYVVKYYGSYFKNT------DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~------~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      +|+|+++++.......      ..++||||++|++|.++.       .......++.|++.+|.+||+.|+|||||||.|
T Consensus       163 E~~nL~rL~~~gv~vp~p~~~~~~~LVME~i~G~~L~~l~-------~~~~~~~l~~qll~~l~~lH~~gIVHrDLKp~N  235 (397)
T 4gyi_A          163 EFAFMKALYEEGFPVPEPIAQSRHTIVMSLVDALPMRQVS-------SVPDPASLYADLIALILRLAKHGLIHGDFNEFN  235 (397)
T ss_dssp             HHHHHHHHHHTTCSCCCEEEEETTEEEEECCSCEEGGGCC-------CCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTS
T ss_pred             HHHHHHHHHhcCCCCCeeeeccCceEEEEecCCccHhhhc-------ccHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHH
Confidence            3677777655432211      236999999998886542       122346788999999999999999999999444


Q ss_pred             CCcc
Q psy3253          79 GTLV   82 (251)
Q Consensus        79 i~~~   82 (251)
                      ||+.
T Consensus       236 ILl~  239 (397)
T 4gyi_A          236 ILIR  239 (397)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4433

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.54  E-value=1.2e-07  Score=76.96  Aligned_cols=55  Identities=13%  Similarity=-0.050  Sum_probs=43.2

Q ss_pred             CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy3253           6 SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL   66 (251)
Q Consensus         6 hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~   66 (251)
                      +..+.++++++.+.+..|+||||++|.+|.+...      +......++.+++.+|..||+
T Consensus        69 ~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~~~~~------~~~~~~~~~~~l~~~l~~LH~  123 (263)
T 3tm0_A           69 KLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYE------DEQSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             TSCCCCEEEEEEETTEEEEEEECCSSEEHHHHCC------TTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEecCCceEEEEEecCCeehhhccC------CcccHHHHHHHHHHHHHHHhC
Confidence            5667888888888889999999999999876521      122334678899999999998

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.28  E-value=7.3e-07  Score=71.86  Aligned_cols=51  Identities=10%  Similarity=0.081  Sum_probs=35.5

Q ss_pred             cceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy3253           9 VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR   68 (251)
Q Consensus         9 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~   68 (251)
                      +.++++++..++..++||||++|.+|.  .    ...+   ...++.+++..|..||+..
T Consensus        77 vP~~~~~~~~~~~~~~v~e~i~G~~l~--~----~~~~---~~~~~~~l~~~l~~lh~~~  127 (264)
T 1nd4_A           77 CAAVLDVVTEAGRDWLLLGEVPGQDLL--S----SHLA---PAEKVSIMADAMRRLHTLD  127 (264)
T ss_dssp             BCCEEEEEECSSCEEEEEECCSSEETT--T----SCCC---HHHHHHHHHHHHHHHTTSC
T ss_pred             CCeEEEeccCCCCCEEEEEecCCcccC--c----CcCC---HhHHHHHHHHHHHHHhCCC
Confidence            566888888777899999999998884  1    1112   2245667777777777643

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.26  E-value=1.9e-06  Score=73.31  Aligned_cols=58  Identities=17%  Similarity=0.185  Sum_probs=44.6

Q ss_pred             CCccceeeeeEeeC---CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy3253           6 SPYVVKYYGSYFKN---TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL   66 (251)
Q Consensus         6 hpniv~l~~~~~~~---~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~   66 (251)
                      +..+.+++.++.+.   +..++||||++|.++.+.   .-..++..+...++.+++..|..||+
T Consensus        97 ~vpvP~~~~~~~~~~~~g~~~~vme~v~G~~l~~~---~~~~l~~~~~~~~~~~l~~~La~LH~  157 (359)
T 3dxp_A           97 DVPVAKMYALCEDESVIGRAFYIMEFVSGRVLWDQ---SLPGMSPAERTAIYDEMNRVIAAMHT  157 (359)
T ss_dssp             SSCCCCEEEEECCTTTTSSCEEEEECCCCBCCCCT---TCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCccCCeEEEEEecCCeecCCC---ccccCCHHHHHHHHHHHHHHHHHHhC
Confidence            34577888887665   347999999998777431   12357788888999999999999997

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.04  E-value=2.1e-06  Score=71.33  Aligned_cols=42  Identities=12%  Similarity=0.068  Sum_probs=33.9

Q ss_pred             EEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy3253          22 LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL   66 (251)
Q Consensus        22 ~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~   66 (251)
                      .|+||++++|.+|.+...   ..++..+...++.+++..+..||+
T Consensus        91 ~~~vm~~i~G~~l~~~~~---~~l~~~~~~~~~~~l~~~la~LH~  132 (304)
T 3sg8_A           91 SFAGFTKIKGVPLTPLLL---NNLPKQSQNQAAKDLARFLSELHS  132 (304)
T ss_dssp             SCEEEECCCCEECCHHHH---HTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcccCCeECCcccc---ccCCHHHHHHHHHHHHHHHHHHHc
Confidence            488999999988875432   357788888888999999999987

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=98.00  E-value=0.00016  Score=56.76  Aligned_cols=135  Identities=17%  Similarity=0.193  Sum_probs=90.2

Q ss_pred             CHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCce
Q psy3253          33 SVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI  112 (251)
Q Consensus        33 sL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni  112 (251)
                      ||.+.++..+.++++.+++.++.|.+.+|+-+-.+.--|..|                                ..|..|
T Consensus        34 SL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~~~~~~i--------------------------------~~~~~i   81 (229)
T 2yle_A           34 SLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRRQPRHRV--------------------------------RSAAQI   81 (229)
T ss_dssp             EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCC--------------------------------CSGGGE
T ss_pred             cHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccCCcee--------------------------------cCCcce
Confidence            899999989999999999999999999987763211112221                                227788


Q ss_pred             ecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhh
Q psy3253         113 LLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIF  191 (251)
Q Consensus       113 l~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~  191 (251)
                      ++..+|++...+ +.+.            .....+.|||... ...+.+.=|+|||+++|..+- |-+            
T Consensus        82 ~l~~dG~V~f~~-~~s~------------~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~------------  135 (229)
T 2yle_A           82 RVWRDGAVTLAP-AADD------------AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK------------  135 (229)
T ss_dssp             EEETTSCEEECC-C------------------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC------------
T ss_pred             EEecCCceeccc-cccc------------ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC------------
Confidence            899999877664 1110            1122366888764 345677889999999998754 211            


Q ss_pred             hcCCCCCCCCCCCCCCCHHHHHHHHHhhhc-------------------------CcCccCCHHHHhc
Q psy3253         192 MIPTKPPPSFREPDVWTPEFIDFVSRCLVK-------------------------NPEERATASEMLN  234 (251)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~li~~~l~~-------------------------~p~~Rps~~evl~  234 (251)
                               ......+++.+.+||..|..-                         .+..|.++++|++
T Consensus       136 ---------e~eE~eLS~~LE~LL~~Mt~~~~d~~~~DeG~~~~~eg~~d~~~~~~~~~~~sl~~Vi~  194 (229)
T 2yle_A          136 ---------ENEERELSPPLEQLIDHMANTVEADGSNDEGYEAAEEGLGDEDEKRKISAIRSYRDVMK  194 (229)
T ss_dssp             ---------TTEEECCCHHHHHHHHHHTTCCC--------------------CCSCCCCCCSHHHHHH
T ss_pred             ---------cccchhhCHHHHHHHHHHHhcccccccccccccccccccccccccccccCcCCHHHHHH
Confidence                     112456799999999999866                         2467888888874

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.17  E-value=0.0015  Score=54.08  Aligned_cols=57  Identities=7%  Similarity=-0.030  Sum_probs=38.4

Q ss_pred             cceeeeeEe-eCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy3253           9 VVKYYGSYF-KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR   68 (251)
Q Consensus         9 iv~l~~~~~-~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~   68 (251)
                      |.+++.+.. ..+..++|||+++|.+|.+..-   ..++..+...++.++...|..||+..
T Consensus        74 VP~~~~~~~~~~g~~~~v~e~i~G~~l~~~~~---~~l~~~~~~~~~~~lg~~La~LH~~~  131 (306)
T 3tdw_A           74 IPQYVYIGKRSDGNPFVGYRKVQGQILGEDGM---AVLPDDAKDRLALQLAEFMNELSAFP  131 (306)
T ss_dssp             CCCEEEEEECTTSCEEEEEECCCSEECHHHHH---TTSCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCeEeecccCCCceEEEEeccCCeECchhhh---hhCCHHHHHHHHHHHHHHHHHHhcCC
Confidence            344455553 3455789999999988876322   34566677777777777777777654

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.11  E-value=0.0012  Score=53.34  Aligned_cols=54  Identities=13%  Similarity=0.047  Sum_probs=38.3

Q ss_pred             cceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy3253           9 VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR   67 (251)
Q Consensus         9 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~   67 (251)
                      |-++++++.+.+..++|||+++|.++.+....     .......+..++...|..||..
T Consensus        82 VP~v~~~~~~~~~~~lvme~l~G~~~~~~~~~-----~~~~~~~~~~~l~~~L~~Lh~~  135 (272)
T 4gkh_A           82 LPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEE-----YPDSGENIVDALAVFLRRLHSI  135 (272)
T ss_dssp             CCCEEEEEEETTEEEEEEECCCSEEHHHHHHH-----CGGGHHHHHHHHHHHHHHHHTS
T ss_pred             cCeEEEEEEECCeEEEEEEeeCCccccccccC-----CHHHHHHHHHHHHHHHHHhcCC
Confidence            55677888888899999999999888776542     1122334566777777777754

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=96.36  E-value=0.0028  Score=53.36  Aligned_cols=24  Identities=17%  Similarity=0.304  Sum_probs=17.7

Q ss_pred             cccCceecCCCCCeEecccccccc
Q psy3253         107 LKAGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus       107 ~~~~nil~~~~~~~kl~dfg~~~~  130 (251)
                      +.+.||+++....+.|+||+.+..
T Consensus       229 l~~~Nil~~~~~~~~vIDwe~a~~  252 (357)
T 3ats_A          229 ARVGNVLYRDFQPVAVLDWEMVAL  252 (357)
T ss_dssp             CSGGGEEEETTEEEEECCGGGCEE
T ss_pred             CCCCeEEEeCCcEEEEEccccccc
Confidence            448899888544468999998853

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=94.32  E-value=0.056  Score=44.70  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=16.9

Q ss_pred             cCceecCCCCCeEeccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAG  129 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~  129 (251)
                      +.||+++.++.+.++||+.+.
T Consensus       231 ~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          231 TGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             TTSEEECGGGCEEECCCTTCE
T ss_pred             cccEEEeCCCcEEEEehhhcc
Confidence            777777666779999999874

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=93.35  E-value=0.18  Score=41.09  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=16.3

Q ss_pred             cCceecCCCCCeEecccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~~  130 (251)
                      +.|++ ..++.+.++||..+..
T Consensus       182 ~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          182 CENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             GGGEE-ECSSCEEECCCTTCEE
T ss_pred             cCCEE-ECCCCEEEEecccccC
Confidence            78888 5556789999988753

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=91.54  E-value=0.16  Score=43.60  Aligned_cols=22  Identities=9%  Similarity=0.191  Sum_probs=17.4

Q ss_pred             cCceecCCCCCeEeccccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAGQL  131 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~~~  131 (251)
                      +.||+++.++ +.++||+.+...
T Consensus       241 ~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          241 TGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             GGGEEECSSC-EEECCCTTCEEE
T ss_pred             CCcEEEeCCC-CEEEeCcccccC
Confidence            7788887666 899999988643

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=85.73  E-value=0.83  Score=37.39  Aligned_cols=20  Identities=35%  Similarity=0.479  Sum_probs=16.0

Q ss_pred             cCceecCCCCCeEecccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~~  130 (251)
                      +.||+++ + .+.++||+.+..
T Consensus       204 ~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          204 AGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             GGGEEES-S-SEEECCCTTCCE
T ss_pred             cccEeEc-C-CCEEEECCCCCc
Confidence            8888887 4 789999988743

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=85.02  E-value=0.46  Score=39.20  Aligned_cols=23  Identities=30%  Similarity=0.237  Sum_probs=16.3

Q ss_pred             cCceecCCC----CCeEeccccccccc
Q psy3253         109 AGNILLNTE----GHAKLADFGVAGQL  131 (251)
Q Consensus       109 ~~nil~~~~----~~~kl~dfg~~~~~  131 (251)
                      +.||+++.+    +.+.++||+.+...
T Consensus       192 ~~Nil~~~~~~~~~~~~lIDf~~a~~G  218 (333)
T 3csv_A          192 AQNLLWLPEREGLARVGVIDFQDAKLG  218 (333)
T ss_dssp             GGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred             cccEEeccCcCCCCCeEEEeCCCcCcC
Confidence            667776553    56889999988543

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=83.88  E-value=0.3  Score=40.05  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=16.2

Q ss_pred             cCceecCCCCCeEecccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~~  130 (251)
                      +.||+++.+..+.++||+.+..
T Consensus       196 ~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          196 QDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             GGGEEEETTEEEEECCCTTCEE
T ss_pred             ccCEEEeCCceEEEecchhccC
Confidence            7788877665457999988743

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=80.51  E-value=1.1  Score=37.18  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=17.9

Q ss_pred             cCceecCCCCCeEecccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~~  130 (251)
                      +.|++++.++.+.++||+.+..
T Consensus       215 ~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          215 AGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             GGGEEECGGGCEEECCCSSCEE
T ss_pred             cCCEEEeCCCeEEEEECCCCee
Confidence            8888888777789999987753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	9e-70
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	1e-64
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-62
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-59
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	8e-59
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	3e-58
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-57
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	6e-57
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	8e-56
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-55
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-55
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	5e-54
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-53
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-52
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-52
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-49
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-49
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	4e-49
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	9e-49
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	3e-46
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	5e-46
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	6e-46
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	7e-46
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	1e-45
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	6e-44
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	8e-44
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	9e-44
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-43
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-43
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	3e-43
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	8e-43
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	8e-43
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	1e-42
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-42
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-42
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	4e-42
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	8e-41
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-40
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-40
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-40
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	6e-40
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	3e-39
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	6e-39
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	7e-39
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	8e-39
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-38
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	5e-38
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-37
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-36
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	3e-36
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	4e-36
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	4e-36
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	7e-36
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	2e-35
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	5e-35
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-34
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-32
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-32
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	3e-32
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-31
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	2e-29
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	7e-25
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	4e-07

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  214 bits (545), Expect = 9e-70
 Identities = 91/250 (36%), Positives = 136/250 (54%), Gaps = 38/250 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +  CD P +VK   +++   +LWI++E+C  G+V  +M   ++ L+E +I  +   TL  
Sbjct: 63  LASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA 122

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH  + IHRD+KAG                                 NIL   +G  
Sbjct: 123 LNYLHDNKIIHRDLKAG---------------------------------NILFTLDGDI 149

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----EIGYDCVADMWSLGITALEMA 175
           KLADFGV+ + T T+ +R++ IGTP+WMAPEV+      +  YD  AD+WSLGIT +EMA
Sbjct: 150 KLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMA 209

Query: 176 EGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           E +PP+ +++PMR +  I    PP+  +P  W+  F DF+ +CL KN + R T S++L H
Sbjct: 210 EIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQH 269

Query: 236 EFIQRHDTDP 245
            F+      P
Sbjct: 270 PFVTVDSNKP 279

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  200 bits (511), Expect = 1e-64
 Identities = 89/246 (36%), Positives = 137/246 (55%), Gaps = 35/246 (14%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M++  +P +V Y  SY    +LW+VMEY   GS++D++   +  + E +IA +  + L+ 
Sbjct: 71  MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT--ETCMDEGQIAAVCRECLQA 128

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LE+LH  + IHRDIK+                                  NILL  +G  
Sbjct: 129 LEFLHSNQVIHRDIKSD---------------------------------NILLGMDGSV 155

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           KL DFG   Q+T   +KR+T++GTP+WMAPEV+    Y    D+WSLGI A+EM EG+PP
Sbjct: 156 KLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 215

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           Y + +P+RA+++I T   P  + P+  +  F DF++RCL  + E+R +A E+L H+F++ 
Sbjct: 216 YLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKI 275

Query: 241 HDTDPS 246
                S
Sbjct: 276 AKPLSS 281

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  195 bits (498), Expect = 2e-62
 Identities = 90/244 (36%), Positives = 125/244 (51%), Gaps = 42/244 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q+   P  ++Y G Y +    W+VMEYC  GS SD++ + KK L E EIA +    L+G
Sbjct: 69  LQKLRHPNTIQYRGCYLREHTAWLVMEYC-LGSASDLLEVHKKPLQEVEIAAVTHGALQG 127

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YLH    IHRD+KAG                                 NILL+  G  
Sbjct: 128 LAYLHSHNMIHRDVKAG---------------------------------NILLSEPGLV 154

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG---YDCVADMWSLGITALEMAEG 177
           KL DFG A  +       N+ +GTP+WMAPEVI  +    YD   D+WSLGIT +E+AE 
Sbjct: 155 KLGDFGSASIMAPA----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAER 210

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           KPP  +++ M A++ I     P+ +    W+  F +FV  CL K P++R T+  +L H F
Sbjct: 211 KPPLFNMNAMSALYHIAQNESPALQSGH-WSEYFRNFVDSCLQKIPQDRPTSEVLLKHRF 269

Query: 238 IQRH 241
           + R 
Sbjct: 270 VLRE 273

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  185 bits (472), Expect = 5e-59
 Identities = 63/241 (26%), Positives = 99/241 (41%), Gaps = 39/241 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
                 P +++ YG +   T +++++EY   G+V   ++ +     E   AT + +    
Sbjct: 60  QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ-KLSKFDEQRTATYITELANA 118

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L Y H +R IHRDIK                                   N+LL + G  
Sbjct: 119 LSYCHSKRVIHRDIKPE---------------------------------NLLLGSAGEL 145

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ADFG +     +  +R T+ GT  ++ PE+I+   +D   D+WSLG+   E   GKPP
Sbjct: 146 KIADFGWSVHAPSS--RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPP 203

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR 240
           +           I          PD  T    D +SR L  NP +R    E+L H +I  
Sbjct: 204 FEANTYQETYKRISRVEFTF---PDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITA 260

Query: 241 H 241
           +
Sbjct: 261 N 261

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  187 bits (475), Expect = 8e-59
 Identities = 84/287 (29%), Positives = 134/287 (46%), Gaps = 78/287 (27%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +C+SPY+V +YG+++ + ++ I ME+   GS+  +++ +   + E  +  +    +KG
Sbjct: 58  LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPEQILGKVSIAVIKG 116

Query: 61  LEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           L YL  + KI HRD+K                                   NIL+N+ G 
Sbjct: 117 LTYLREKHKIMHRDVKPS---------------------------------NILVNSRGE 143

Query: 120 AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
            KL DFGV+GQL D+MA  N+ +GT  +M+PE +Q   Y   +D+WS+G++ +EMA G+ 
Sbjct: 144 IKLCDFGVSGQLIDSMA--NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRY 201

Query: 180 PY--------------------------------------GDIHPMRAIFMIP---TKPP 198
           P                                        D  P  AIF +       P
Sbjct: 202 PIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEP 261

Query: 199 PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
           P      V++ EF DFV++CL+KNP ERA   +++ H FI+R D + 
Sbjct: 262 PPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAEE 308

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  184 bits (467), Expect = 3e-58
 Identities = 64/246 (26%), Positives = 105/246 (42%), Gaps = 44/246 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD----LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCD 56
           ++    P +V++Y S+         + +V E   +G++   ++ R K +    + +    
Sbjct: 62  LKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK-RFKVMKIKVLRSWCRQ 120

Query: 57  TLKGLEYLHLRRK--IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
            LKGL++LH R    IHRD+K                                   NI +
Sbjct: 121 ILKGLQFLHTRTPPIIHRDLKCD---------------------------------NIFI 147

Query: 115 NTE-GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALE 173
               G  K+ D G+A     + AK   VIGTP +MAPE+ +E  YD   D+++ G+  LE
Sbjct: 148 TGPTGSVKIGDLGLATLKRASFAK--AVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLE 204

Query: 174 MAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
           MA  + PY +      I+   T          V  PE  + +  C+ +N +ER +  ++L
Sbjct: 205 MATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLL 264

Query: 234 NHEFIQ 239
           NH F Q
Sbjct: 265 NHAFFQ 270

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  181 bits (461), Expect = 2e-57
 Identities = 56/248 (22%), Positives = 99/248 (39%), Gaps = 45/248 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKK---TLSEDEIATILC 55
           +++   P +V+YY      T+  L+IVMEYC  G ++ ++    K    L E+ +  ++ 
Sbjct: 57  LRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMT 116

Query: 56  DTLKGLEYLHLRRK-----IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAG 110
                L+  H R       +HRD+K                                   
Sbjct: 117 QLTLALKECHRRSDGGHTVLHRDLKPA--------------------------------- 143

Query: 111 NILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGIT 170
           N+ L+ + + KL DFG+A  L    +     +GTP++M+PE +  + Y+  +D+WSLG  
Sbjct: 144 NVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCL 203

Query: 171 ALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS 230
             E+    PP+           I          P  ++ E  + ++R L      R +  
Sbjct: 204 LYELCALMPPFTAFSQKELAGKIREGKFRRI--PYRYSDELNEIITRMLNLKDYHRPSVE 261

Query: 231 EMLNHEFI 238
           E+L +  I
Sbjct: 262 EILENPLI 269

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  183 bits (465), Expect = 6e-57
 Identities = 49/251 (19%), Positives = 93/251 (37%), Gaps = 38/251 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M     P +V  + ++  + ++ ++ E+   G + + +      +SEDE    +    KG
Sbjct: 77  MSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKG 136

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE--G 118
           L ++H    +H D                                 LK  NI+  T+   
Sbjct: 137 LCHMHENNYVHLD---------------------------------LKPENIMFTTKRSN 163

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
             KL DFG+   L           GT  + APEV +        DMWS+G+ +  +  G 
Sbjct: 164 ELKLIDFGLTAHLDPKQ-SVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGL 222

Query: 179 PPYGDIHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
            P+G  +    +  + +             + +  DF+ + L+ +P  R T  + L H +
Sbjct: 223 SPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPW 282

Query: 238 IQRHDTDPSQN 248
           +   +  P ++
Sbjct: 283 LTPGN-APGRD 292

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  177 bits (451), Expect = 8e-56
 Identities = 49/244 (20%), Positives = 89/244 (36%), Gaps = 37/244 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
            +  +   VVK+YG   +    ++ +EYC  G + D +      + E +        + G
Sbjct: 57  NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE-PDIGMPEPDAQRFFHQLMAG 115

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YLH     HRDIK                                   N+LL+   + 
Sbjct: 116 VVYLHGIGITHRDIKPE---------------------------------NLLLDERDNL 142

Query: 121 KLADFGVAGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEG 177
           K++DFG+A        +R  N + GT  ++APE+++   +     D+WS GI    M  G
Sbjct: 143 KISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAG 202

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
           + P+         +    +               +  + + LV+NP  R T  ++    +
Sbjct: 203 ELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRW 262

Query: 238 IQRH 241
             + 
Sbjct: 263 YNKP 266

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  177 bits (450), Expect = 2e-55
 Identities = 54/250 (21%), Positives = 100/250 (40%), Gaps = 43/250 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++     ++ + G Y     L IV ++C   S+   + + +      ++  I   T +G
Sbjct: 58  LRKTRHVNILLFMG-YSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQG 116

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YLH +  IHRD                                 LK+ NI L+ +   
Sbjct: 117 MDYLHAKSIIHRD---------------------------------LKSNNIFLHEDLTV 143

Query: 121 KLADFGVAGQLTDTMA--KRNTVIGTPFWMAPEVIQ---EIGYDCVADMWSLGITALEMA 175
           K+ DFG+A   +      +   + G+  WMAPEVI+   +  Y   +D+++ GI   E+ 
Sbjct: 144 KIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELM 203

Query: 176 EGKPPYGDIHPMRAIFMIPTK---PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM 232
            G+ PY +I+    I  +  +    P   +            ++ CL K  +ER    ++
Sbjct: 204 TGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQI 263

Query: 233 LNH-EFIQRH 241
           L   E + R 
Sbjct: 264 LASIELLARS 273

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score =  178 bits (453), Expect = 3e-55
 Identities = 45/250 (18%), Positives = 92/250 (36%), Gaps = 37/250 (14%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q   P ++  + ++    ++ +++E+   G + D +      +SE E+   +    +G
Sbjct: 80  MNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEG 139

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT--EG 118
           L+++H    +H D                                 +K  NI+  T    
Sbjct: 140 LKHMHEHSIVHLD---------------------------------IKPENIMCETKKAS 166

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
             K+ DFG+A +L            T  + APE++         DMW++G+    +  G 
Sbjct: 167 SVKIIDFGLATKLNPDE-IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGL 225

Query: 179 PPYGDIHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
            P+     +  +  +               +PE  DF+   L K P +R T  + L H +
Sbjct: 226 SPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPW 285

Query: 238 IQRHDTDPSQ 247
           ++   ++ + 
Sbjct: 286 LKGDHSNLTS 295

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  173 bits (439), Expect = 5e-54
 Identities = 71/248 (28%), Positives = 105/248 (42%), Gaps = 42/248 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
            +    P +++   +Y  NT  ++V +    G + D +   K TLSE E   I+   L+ 
Sbjct: 64  RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT-EKVTLSEKETRKIMRALLEV 122

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +  LH    +HRD+K                                   NILL+ + + 
Sbjct: 123 ICALHKLNIVHRDLKPE---------------------------------NILLDDDMNI 149

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ------EIGYDCVADMWSLGITALEM 174
           KL DFG + QL     K   V GTP ++APE+I+        GY    DMWS G+    +
Sbjct: 150 KLTDFGFSCQLDPGE-KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTL 208

Query: 175 AEGKPPYGDIHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             G PP+     M  + MI +        E D ++    D VSR LV  P++R TA E L
Sbjct: 209 LAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEAL 268

Query: 234 NHEFIQRH 241
            H F Q++
Sbjct: 269 AHPFFQQY 276

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  172 bits (437), Expect = 2e-53
 Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 39/243 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M + D P+ VK Y ++  +  L+  + Y   G +   +R +  +  E        + +  
Sbjct: 62  MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIR-KIGSFDETCTRFYTAEIVSA 120

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH +  IHRD+K                                   NILLN + H 
Sbjct: 121 LEYLHGKGIIHRDLKPE---------------------------------NILLNEDMHI 147

Query: 121 KLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
           ++ DFG A  L+     A+ N+ +GT  +++PE++ E      +D+W+LG    ++  G 
Sbjct: 148 QITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL 207

Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFI 238
           PP+   +       I          P+ + P+  D V + LV +  +R    EM  +  +
Sbjct: 208 PPFRAGNEYLIFQKIIKLEYDF---PEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPL 264

Query: 239 QRH 241
           + H
Sbjct: 265 KAH 267

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (433), Expect = 1e-52
 Identities = 53/244 (21%), Positives = 88/244 (36%), Gaps = 37/244 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +       ++  + S+    +L ++ E+     + + +      L+E EI + +    + 
Sbjct: 55  LNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEA 114

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT--EG 118
           L++LH     H DI+                                   NI+  T    
Sbjct: 115 LQFLHSHNIGHFDIRPE---------------------------------NIIYQTRRSS 141

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK 178
             K+ +FG A QL         +   P + APEV Q        DMWSLG     +  G 
Sbjct: 142 TIKIIEFGQARQLKPGD-NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGI 200

Query: 179 PPYGDIHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF 237
            P+      + I  I   +           + E +DFV R LVK  + R TASE L H +
Sbjct: 201 NPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPW 260

Query: 238 IQRH 241
           +++ 
Sbjct: 261 LKQK 264

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  170 bits (432), Expect = 2e-52
 Identities = 53/243 (21%), Positives = 101/243 (41%), Gaps = 33/243 (13%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           + +   P +V     Y     L+++M+    G + D +   K   +E + + ++   L  
Sbjct: 61  LHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIV-EKGFYTERDASRLIFQVLDA 119

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YLH    +HRD+K                  N++                 L+ +   
Sbjct: 120 VKYLHDLGIVHRDLKP----------------ENLL--------------YYSLDEDSKI 149

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
            ++DFG++ ++ D  +  +T  GTP ++APEV+ +  Y    D WS+G+ A  +  G PP
Sbjct: 150 MISDFGLS-KMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 208

Query: 181 YGDIHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
           + D +  +    I   +        D  +    DF+   + K+PE+R T  + L H +I 
Sbjct: 209 FYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIA 268

Query: 240 RHD 242
              
Sbjct: 269 GDT 271

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (409), Expect = 1e-49
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 42/246 (17%)

Query: 1   MQQCDSPYVVKYYGSYFK-NTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTL 58
           M Q     +V+  G   +    L+IV EY   GS+ D +R R ++ L  D +     D  
Sbjct: 54  MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVC 113

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           + +EYL     +HRD                                 L A N+L++ + 
Sbjct: 114 EAMEYLEGNNFVHRD---------------------------------LAARNVLVSEDN 140

Query: 119 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-G 177
            AK++DFG+  + + T    +T      W APE ++E  +   +D+WS GI   E+   G
Sbjct: 141 VAKVSDFGLTKEASSTQ---DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFG 197

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH-E 236
           + PY  I     +  +          PD   P   + +  C   +   R +  ++    E
Sbjct: 198 RVPYPRIPLKDVVPRVEKGYKMDA--PDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLE 255

Query: 237 FIQRHD 242
            I+ H+
Sbjct: 256 HIKTHE 261

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (413), Expect = 2e-49
 Identities = 60/258 (23%), Positives = 95/258 (36%), Gaps = 47/258 (18%)

Query: 1   MQQCDSPYVVKYYGSY----FKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILC 55
            +    P++V+    Y         L IVME    G +   ++ R  +  +E E + I+ 
Sbjct: 59  WRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMK 118

Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
              + ++YLH     HRD+K                                   N+L  
Sbjct: 119 SIGEAIQYLHSINIAHRDVKPE---------------------------------NLLYT 145

Query: 116 T---EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITAL 172
           +       KL DFG A + T       T   TP+++APEV+    YD   DMWSLG+   
Sbjct: 146 SKRPNAILKLTDFGFAKETTSHN-SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 204

Query: 173 EMAEGKPPYGDIHPMRAIFMIPTK-----PPPSFREPDVWTPEFIDFVSRCLVKNPEERA 227
            +  G PP+   H +     + T+           E    + E    +   L   P +R 
Sbjct: 205 ILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRM 264

Query: 228 TASEMLNHEFIQRHDTDP 245
           T +E +NH +I +    P
Sbjct: 265 TITEFMNHPWIMQSTKVP 282

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  162 bits (410), Expect = 4e-49
 Identities = 54/245 (22%), Positives = 95/245 (38%), Gaps = 38/245 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
               + P++   + ++    +L+ VMEY   G +   ++                + + G
Sbjct: 57  SLAWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQ-SCHKFDLSRATFYAAEIILG 115

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L++LH +  ++RD+K                                   NILL+ +GH 
Sbjct: 116 LQFLHSKGIVYRDLKLD---------------------------------NILLDKDGHI 142

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ADFG+  +     AK NT  GTP ++APE++    Y+   D WS G+   EM  G+ P
Sbjct: 143 KIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSP 202

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATA-SEMLNHEFIQ 239
           +           I    P     P     E  D + +  V+ PE+R     ++  H   +
Sbjct: 203 FHGQDEEELFHSIRMDNPFY---PRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFR 259

Query: 240 RHDTD 244
             + +
Sbjct: 260 EINWE 264

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  160 bits (405), Expect = 9e-49
 Identities = 55/246 (22%), Positives = 92/246 (37%), Gaps = 43/246 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D+PY+V+  G   +   L +VME  G G +   +  +++ +    +A +L     G
Sbjct: 63  MHQLDNPYIVRLIG-VCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMG 121

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL  +  +HRD                                 L A N+LL    +A
Sbjct: 122 MKYLEEKNFVHRD---------------------------------LAARNVLLVNRHYA 148

Query: 121 KLADFGVAGQLTD---TMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG++  L         R+       W APE I    +   +D+WS G+T  E  + 
Sbjct: 149 KISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSY 208

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE---ML 233
           G+ PY  +     +  I          P    PE    +S C +   E+R         +
Sbjct: 209 GQKPYKKMKGPEVMAFIEQGKRMEC--PPECPPELYALMSDCWIYKWEDRPDFLTVEQRM 266

Query: 234 NHEFIQ 239
              +  
Sbjct: 267 RACYYS 272

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  155 bits (393), Expect = 3e-46
 Identities = 52/250 (20%), Positives = 97/250 (38%), Gaps = 42/250 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +   D P++V    ++     L  +++    G +   +  +    SE ++     + + G
Sbjct: 61  VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS-QHGVFSEADMRFYAAEIILG 119

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LE++H R  ++RD+K                                   NILL+  GH 
Sbjct: 120 LEHMHNRFVVYRDLKPA---------------------------------NILLDEHGHV 146

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYDCVADMWSLGITALEMAEGKP 179
           +++D G+A   +    K +  +GT  +MAPEV+Q+ + YD  AD +SLG    ++  G  
Sbjct: 147 RISDLGLACDFSKK--KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHS 204

Query: 180 PYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEMLN 234
           P+          +       +   PD ++PE    +   L ++   R       A E+  
Sbjct: 205 PFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 264

Query: 235 HEFIQRHDTD 244
             F +  D  
Sbjct: 265 SPFFRSLDWQ 274

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 5e-46
 Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 37/237 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M       +V+ YG   K   ++I+ EY   G + + +R  +      ++  +  D  + 
Sbjct: 53  MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEA 112

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +EYL  ++ +HRD                                 L A N L+N +G  
Sbjct: 113 MEYLESKQFLHRD---------------------------------LAARNCLVNDQGVV 139

Query: 121 KLADFGVAGQLTDTMAKRNT-VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AEGK 178
           K++DFG++  + D     +        W  PEV+    +   +D+W+ G+   E+ + GK
Sbjct: 140 KVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGK 199

Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
            PY           I          P + + +    +  C  +  +ER T   +L++
Sbjct: 200 MPYERFTNSETAEHIAQGLRLYR--PHLASEKVYTIMYSCWHEKADERPTFKILLSN 254

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 6e-46
 Identities = 52/246 (21%), Positives = 93/246 (37%), Gaps = 44/246 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           MQQ D+PY+V+  G   +     +VME    G ++  ++ + + + +  I  ++     G
Sbjct: 62  MQQLDNPYIVRMIG-ICEAESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSMG 119

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A N+LL T+ +A
Sbjct: 120 MKYLEESNFVHRD---------------------------------LAARNVLLVTQHYA 146

Query: 121 KLADFGVAGQLT---DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG++  L    +    +        W APE I    +   +D+WS G+   E  + 
Sbjct: 147 KISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSY 206

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE---ML 233
           G+ PY  +       M+          P     E  D ++ C   + E R   +     L
Sbjct: 207 GQKPYRGMKGSEVTAMLEKGERMGC--PAGCPREMYDLMNLCWTYDVENRPGFAAVELRL 264

Query: 234 NHEFIQ 239
            + +  
Sbjct: 265 RNYYYD 270

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (386), Expect = 7e-46
 Identities = 59/251 (23%), Positives = 102/251 (40%), Gaps = 40/251 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++   P V+  +  Y   TD+ +++E    G + D +   K++L+E+E    L   L G
Sbjct: 67  LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLA-EKESLTEEEATEFLKQILNG 125

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-- 118
           + YLH  +  H D                                 LK  NI+L      
Sbjct: 126 VYYLHSLQIAHFD---------------------------------LKPENIMLLDRNVP 152

Query: 119 --HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE 176
               K+ DFG+A ++ D   +   + GTP ++APE++        ADMWS+G+    +  
Sbjct: 153 KPRIKIIDFGLAHKI-DFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS 211

Query: 177 GKPPYGDIHPMRAIFMIPT-KPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           G  P+        +  +               +    DF+ R LVK+P++R T  + L H
Sbjct: 212 GASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH 271

Query: 236 EFIQRHDTDPS 246
            +I+  DT  +
Sbjct: 272 PWIKPKDTQQA 282

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (382), Expect = 1e-45
 Identities = 52/237 (21%), Positives = 90/237 (37%), Gaps = 37/237 (15%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M +   P +V+ YG   +   + +V E+   G +SD +R ++   + + +  +  D  +G
Sbjct: 54  MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG 113

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL     IHRD                                 L A N L+      
Sbjct: 114 MAYLEEACVIHRD---------------------------------LAARNCLVGENQVI 140

Query: 121 KLADFGVAGQLTDTMAKRN-TVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AEGK 178
           K++DFG+   + D     +        W +PEV     Y   +D+WS G+   E+ +EGK
Sbjct: 141 KVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGK 200

Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
            PY +      +  I T        P + +      ++ C  + PE+R   S +L  
Sbjct: 201 IPYENRSNSEVVEDISTGFRLYK--PRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ 255

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  148 bits (375), Expect = 6e-44
 Identities = 54/249 (21%), Positives = 97/249 (38%), Gaps = 45/249 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +     P++++ +G++     ++++M+Y   G     +  + +            +    
Sbjct: 58  LSIVTHPFIIRMWGTFQDAQQIFMIMDYI-EGGELFSLLRKSQRFPNPVAKFYAAEVCLA 116

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH +  I+RD+                                 K  NILL+  GH 
Sbjct: 117 LEYLHSKDIIYRDL---------------------------------KPENILLDKNGHI 143

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG A  + D      T+ GTP ++APEV+    Y+   D WS GI   EM  G  P
Sbjct: 144 KITDFGFAKYVPDVT---YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTP 200

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + D + M+    I          P  +  +  D +SR + ++  +R         ++ NH
Sbjct: 201 FYDSNTMKTYEKILNAELR---FPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH 257

Query: 236 EFIQRHDTD 244
            + +    +
Sbjct: 258 PWFKEVVWE 266

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  147 bits (371), Expect = 8e-44
 Identities = 49/239 (20%), Positives = 85/239 (35%), Gaps = 39/239 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D   +++ YG       + +V E    GS+ D +R  +       ++       +G
Sbjct: 65  MHSLDHRNLIRLYG-VVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEG 123

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  +R IHR                                  L A N+LL T    
Sbjct: 124 MGYLESKRFIHR---------------------------------DLAARNLLLATRDLV 150

Query: 121 KLADFGVAGQLT---DTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K+ DFG+   L    D    +        W APE ++   +   +D W  G+T  EM   
Sbjct: 151 KIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTY 210

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           G+ P+  ++  + +  I  K       P+    +  + + +C    PE+R T   + + 
Sbjct: 211 GQEPWIGLNGSQILHKI-DKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDF 268

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (370), Expect = 9e-44
 Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 38/237 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M+Q D P++VK  G       +WI+ME C  G +   +++RK +L    +          
Sbjct: 62  MRQFDHPHIVKLIG-VITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTA 120

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L YL  +R +HRDI A                                  N+L+++    
Sbjct: 121 LAYLESKRFVHRDIAAR---------------------------------NVLVSSNDCV 147

Query: 121 KLADFGVAGQLTDTMAKRNT-VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AEGK 178
           KL DFG++  + D+   + +       WMAPE I    +   +D+W  G+   E+   G 
Sbjct: 148 KLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGV 207

Query: 179 PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
            P+  +     I  I          P    P     +++C   +P  R   +E+   
Sbjct: 208 KPFQGVKNNDVIGRIENGERLPM--PPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ 262

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  147 bits (371), Expect = 1e-43
 Identities = 56/248 (22%), Positives = 92/248 (37%), Gaps = 42/248 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q D P V+   G   K+T + I+ E+   GS+   +R      +  ++  +L     G
Sbjct: 81  MGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAG 140

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 141 MKYLADMNYVHRD---------------------------------LAARNILVNSNLVC 167

Query: 121 KLADFGVAGQLTDTMAKRNTV-----IGTPFWMAPEVIQEIGYDCVADMWSLGITALEM- 174
           K++DFG++  L D  +               W APE IQ   +   +D+WS GI   E+ 
Sbjct: 168 KVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVM 227

Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           + G+ PY D+     I  I          P          +  C  K+   R    +++N
Sbjct: 228 SYGERPYWDMTNQDVINAIEQDYRLPP--PMDCPSALHQLMLDCWQKDRNHRPKFGQIVN 285

Query: 235 H-EFIQRH 241
             + + R+
Sbjct: 286 TLDKMIRN 293

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (370), Expect = 2e-43
 Identities = 54/275 (19%), Positives = 95/275 (34%), Gaps = 62/275 (22%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q+   P ++    ++   +++ +V ++     +  I++     L+   I   +  TL+G
Sbjct: 54  LQELSHPNIIGLLDAFGHKSNISLVFDFME-TDLEVIIKDNSLVLTPSHIKAYMLMTLQG 112

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH    +HRD+K                                   N+LL+  G  
Sbjct: 113 LEYLHQHWILHRDLKPN---------------------------------NLLLDENGVL 139

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVADMWSLGITALEMAEGKP 179
           KLADFG+A             + T ++ APE++     Y    DMW++G    E+    P
Sbjct: 140 KLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVP 199

Query: 180 PY---GDIHPMRAIFMIPTKPP----------------------PSFREPDVWTPEFIDF 214
                 D+  +  IF     P                       P          + +D 
Sbjct: 200 FLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDL 259

Query: 215 VSRCLVKNPEERATASEMLNHEFIQRH--DTDPSQ 247
           +    + NP  R TA++ L  ++       T   Q
Sbjct: 260 IQGLFLFNPCARITATQALKMKYFSNRPGPTPGCQ 294

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  145 bits (367), Expect = 3e-43
 Identities = 56/251 (22%), Positives = 103/251 (41%), Gaps = 44/251 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD----LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCD 56
               + P +V  Y +    T      +IVMEY    ++ DI+   +  ++      ++ D
Sbjct: 61  AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH-TEGPMTPKRAIEVIAD 119

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
             + L + H    IHRD+K                                   NI+++ 
Sbjct: 120 ACQALNFSHQNGIIHRDVKPA---------------------------------NIMISA 146

Query: 117 EGHAKLADFGVAGQL---TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALE 173
               K+ DFG+A  +    +++ +   VIGT  +++PE  +    D  +D++SLG    E
Sbjct: 147 TNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYE 206

Query: 174 MAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEER-ATASE 231
           +  G+PP+    P+   +    + P P     +  + +    V + L KNPE R  TA+E
Sbjct: 207 VLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAE 266

Query: 232 MLNHEFIQRHD 242
           M   + ++ H+
Sbjct: 267 MR-ADLVRVHN 276

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (364), Expect = 8e-43
 Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 41/242 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-LSEDEIATILCDTLK 59
           M+Q     +V+ Y        ++I+ EY   GS+ D ++      L+ +++  +     +
Sbjct: 62  MKQLQHQRLVRLYA-VVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAE 120

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ ++  R  IHRD                                 L+A NIL++    
Sbjct: 121 GMAFIEERNYIHRD---------------------------------LRAANILVSDTLS 147

Query: 120 AKLADFGVAGQLTDT-MAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D     R        W APE I    +   +D+WS GI   E+   G
Sbjct: 148 CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHG 207

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN--H 235
           + PY  +     I  +          PD    E    +  C  + PE+R T   + +   
Sbjct: 208 RIPYPGMTNPEVIQNLERGYRMVR--PDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLE 265

Query: 236 EF 237
           +F
Sbjct: 266 DF 267

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (368), Expect = 8e-43
 Identities = 48/260 (18%), Positives = 88/260 (33%), Gaps = 59/260 (22%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK----------------- 43
            Q      +V   G+   +  ++++ EYC  G + + +R +++                 
Sbjct: 95  TQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEE 154

Query: 44  -----TLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITN 98
                 L+ +++        KG+E+L  +  +HRD                         
Sbjct: 155 EEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRD------------------------- 189

Query: 99  QIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEI 156
                   L A N+L+      K+ DFG+A  +        R        WMAPE + E 
Sbjct: 190 --------LAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEG 241

Query: 157 GYDCVADMWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFV 215
            Y   +D+WS GI   E+ + G  PY  I      + +         +P   T E    +
Sbjct: 242 IYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFK-MDQPFYATEEIYIIM 300

Query: 216 SRCLVKNPEERATASEMLNH 235
             C   +  +R +   + + 
Sbjct: 301 QSCWAFDSRKRPSFPNLTSF 320

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (367), Expect = 1e-42
 Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 42/249 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q    P++     ++  +  L  VMEY   G +   +  R++  +E+       + +  
Sbjct: 59  LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-RERVFTEERARFYGAEIVSA 117

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           LEYLH R  ++RDIK                                   N++L+ +GH 
Sbjct: 118 LEYLHSRDVVYRDIKLE---------------------------------NLMLDKDGHI 144

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           K+ DFG+  +     A   T  GTP ++APEV+++  Y    D W LG+   EM  G+ P
Sbjct: 145 KITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP 204

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           + +    R   +I  +       P   +PE    ++  L K+P++R     + A E++ H
Sbjct: 205 FYNQDHERLFELILMEEIRF---PRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH 261

Query: 236 EFIQRHDTD 244
            F    +  
Sbjct: 262 RFFLSINWQ 270

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 2e-42
 Identities = 50/244 (20%), Positives = 85/244 (34%), Gaps = 50/244 (20%)

Query: 1   MQQCDSPY--VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL 58
           +++  S +  V++    + +     +++E              +  L E+   +     L
Sbjct: 61  LKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVL 120

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE- 117
           + + + H    +HRD                                 +K  NIL++   
Sbjct: 121 EAVRHCHNCGVLHRD---------------------------------IKDENILIDLNR 147

Query: 118 GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY-DCVADMWSLGITALEMAE 176
           G  KL DFG    L DT+       GT  +  PE I+   Y    A +WSLGI   +M  
Sbjct: 148 GELKLIDFGSGALLKDTV--YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVC 205

Query: 177 GKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH 235
           G  P+  D   +R       +           + E    +  CL   P +R T  E+ NH
Sbjct: 206 GDIPFEHDEEIIRGQVFFRQR----------VSSECQHLIRWCLALRPSDRPTFEEIQNH 255

Query: 236 EFIQ 239
            ++Q
Sbjct: 256 PWMQ 259

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (364), Expect = 2e-42
 Identities = 50/245 (20%), Positives = 86/245 (35%), Gaps = 40/245 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M   D+P+V +        + + ++ +    G + D +R  K  +    +        KG
Sbjct: 65  MASVDNPHVCRLL-GICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG 123

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + YL  RR +HRD+ A                                  N+L+ T  H 
Sbjct: 124 MNYLEDRRLVHRDLAAR---------------------------------NVLVKTPQHV 150

Query: 121 KLADFGVAGQL--TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AEG 177
           K+ DFG+A  L   +             WMA E I    Y   +D+WS G+T  E+   G
Sbjct: 151 KITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFG 210

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH-E 236
             PY  I       ++          P + T +    + +C + + + R    E++    
Sbjct: 211 SKPYDGIPASEISSILEKGERLPQ--PPICTIDVYMIMVKCWMIDADSRPKFRELIIEFS 268

Query: 237 FIQRH 241
            + R 
Sbjct: 269 KMARD 273

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (360), Expect = 4e-42
 Identities = 54/255 (21%), Positives = 90/255 (35%), Gaps = 43/255 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLK 59
           M++     +V+ Y        ++IV EY   GS+ D ++    K L   ++  +      
Sbjct: 66  MKKLRHEKLVQLYA-VVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS 124

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+ Y+     +HRD                                 L+A NIL+     
Sbjct: 125 GMAYVERMNYVHRD---------------------------------LRAANILVGENLV 151

Query: 120 AKLADFGVAGQLTDT-MAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG+A  + D     R        W APE      +   +D+WS GI   E+  +G
Sbjct: 152 CKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKG 211

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN--H 235
           + PY  +     +  +          P        D + +C  K PEER T   +     
Sbjct: 212 RVPYPGMVNREVLDQVERGYRMPC--PPECPESLHDLMCQCWRKEPEERPTFEYLQAFLE 269

Query: 236 EFIQRHDTD--PSQN 248
           ++    +    P +N
Sbjct: 270 DYFTSTEPQYQPGEN 284

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 8e-41
 Identities = 56/268 (20%), Positives = 101/268 (37%), Gaps = 63/268 (23%)

Query: 1   MQQCDSPYVVKYYGSYF-----KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILC 55
           ++  + P VV+ +         + T L +V E+      + + ++ +  +  + I  ++ 
Sbjct: 64  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMF 123

Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
             L+GL++LH  R +HRD+K                                   NIL+ 
Sbjct: 124 QLLRGLDFLHSHRVVHRDLKPQ---------------------------------NILVT 150

Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA 175
           + G  KLADFG+A ++        +V+ T ++ APEV+ +  Y    D+WS+G    EM 
Sbjct: 151 SSGQIKLADFGLA-RIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMF 209

Query: 176 EGKPPYGDIHPMRAIFMI------------------------PTKPPPSFREPDVWTPEF 211
             KP +     +  +  I                             P  +         
Sbjct: 210 RRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELG 269

Query: 212 IDFVSRCLVKNPEERATASEMLNHEFIQ 239
            D + +CL  NP +R +A   L+H + Q
Sbjct: 270 KDLLLKCLTFNPAKRISAYSALSHPYFQ 297

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  139 bits (351), Expect = 1e-40
 Identities = 53/266 (19%), Positives = 87/266 (32%), Gaps = 63/266 (23%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR------------------- 41
           M + D+P +VK  G       + ++ EY   G +++ +R                     
Sbjct: 70  MAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARV 129

Query: 42  ----KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVIT 97
                  LS  E   I      G+ YL  R+ +HRD                        
Sbjct: 130 SSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRD------------------------ 165

Query: 98  NQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQL--TDTMAKRNTVIGTPFWMAPEVIQE 155
                    L   N L+      K+ADFG++  +   D             WM PE I  
Sbjct: 166 ---------LATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFY 216

Query: 156 IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDF 214
             Y   +D+W+ G+   E+   G  PY  +     I+ +      +   P+    E  + 
Sbjct: 217 NRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILAC--PENCPLELYNL 274

Query: 215 VSRCLVKNPEERATASEMLNHEFIQR 240
           +  C  K P +R +   +  H  +QR
Sbjct: 275 MRLCWSKLPADRPSFCSI--HRILQR 298

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (352), Expect = 1e-40
 Identities = 46/241 (19%), Positives = 87/241 (36%), Gaps = 41/241 (17%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD-LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
           M+    P V+   G   ++     +V+ Y   G + + +R      +  ++        K
Sbjct: 82  MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAK 141

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
           G+++L  ++ +HRD                                 L A N +L+ +  
Sbjct: 142 GMKFLASKKFVHRD---------------------------------LAARNCMLDEKFT 168

Query: 120 AKLADFGVAGQLTDTMAKRNT----VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM- 174
            K+ADFG+A  + D                 WMA E +Q   +   +D+WS G+   E+ 
Sbjct: 169 VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELM 228

Query: 175 AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
             G PPY D++       +          P+       + + +C     E R + SE+++
Sbjct: 229 TRGAPPYPDVNTFDITVYLLQGRRLLQ--PEYCPDPLYEVMLKCWHPKAEMRPSFSELVS 286

Query: 235 H 235
            
Sbjct: 287 R 287

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (349), Expect = 2e-40
 Identities = 56/266 (21%), Positives = 92/266 (34%), Gaps = 60/266 (22%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++ + P +VK          L++V E+        +       +    I + L   L+G
Sbjct: 55  LKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQG 114

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L + H  R +HRD+                                 K  N+L+NTEG  
Sbjct: 115 LAFCHSHRVLHRDL---------------------------------KPQNLLINTEGAI 141

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA-DMWSLGITALEMAEGKP 179
           KLADFG+A      +      + T ++ APE++    Y   A D+WSLG    EM   + 
Sbjct: 142 KLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRA 201

Query: 180 PYGDIHPMRAIFMI-------------------------PTKPPPSFRE-PDVWTPEFID 213
            +     +  +F I                         P      F +       +   
Sbjct: 202 LFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRS 261

Query: 214 FVSRCLVKNPEERATASEMLNHEFIQ 239
            +S+ L  +P +R +A   L H F Q
Sbjct: 262 LLSQMLHYDPNKRISAKAALAHPFFQ 287

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 6e-40
 Identities = 49/273 (17%), Positives = 77/273 (28%), Gaps = 66/273 (24%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD------LWIVMEYCGAGSVSDIMRL--RKKTLSEDEIAT 52
           M++ D   +V+    ++ + +      L +V++Y               K+TL    +  
Sbjct: 67  MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKL 126

Query: 53  ILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
            +    + L Y+H     HRDIK  +  L  D                            
Sbjct: 127 YMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDT--------------------------- 159

Query: 113 LLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITAL 172
                   KL DFG A QL       + +    +     +     Y    D+WS G    
Sbjct: 160 -----AVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLA 214

Query: 173 EMAEGKPPYGDIHPMRAIFMI--------------------------PTKPPPSFREPDV 206
           E+  G+P +     +  +  I                              P +      
Sbjct: 215 ELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPR 274

Query: 207 WTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
             PE I   SR L   P  R T  E   H F  
Sbjct: 275 TPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 307

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score =  135 bits (341), Expect = 3e-39
 Identities = 57/266 (21%), Positives = 94/266 (35%), Gaps = 61/266 (22%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++     +VK Y        L +V E+     +  ++ + +  L      + L   L G
Sbjct: 54  LKELKHSNIVKLYDVIHTKKRLVLVFEHLD-QDLKKLLDVCEGGLESVTAKSFLLQLLNG 112

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           + Y H RR +HRD+K                                   N+L+N EG  
Sbjct: 113 IAYCHDRRVLHRDLKPQ---------------------------------NLLINREGEL 139

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCVADMWSLGITALEMAEGKP 179
           K+ADFG+A      + K    I T ++ AP+V+     Y    D+WS+G    EM  G P
Sbjct: 140 KIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTP 199

Query: 180 PYGDIHPMRAIFMI--------------------------PTKPPPSFREPDVWTPEFID 213
            +  +     +  I                            +P P            ID
Sbjct: 200 LFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGID 259

Query: 214 FVSRCLVKNPEERATASEMLNHEFIQ 239
            +S+ L  +P +R TA + L H + +
Sbjct: 260 LLSKMLKLDPNQRITAKQALEHAYFK 285

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  136 bits (343), Expect = 6e-39
 Identities = 60/249 (24%), Positives = 103/249 (41%), Gaps = 45/249 (18%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q  + P++VK   S+  N++L++VMEY   G +   +R R    SE          +  
Sbjct: 95  LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLT 153

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
            EYLH    I+RD+K                                   N+L++ +G+ 
Sbjct: 154 FEYLHSLDLIYRDLKPE---------------------------------NLLIDQQGYI 180

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKPP 180
           ++ DFG A        +  T+ GTP  +APE+I   GY+   D W+LG+   EMA G PP
Sbjct: 181 QVTDFGFA---KRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237

Query: 181 YGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEMLNH 235
           +    P++    I +        P  ++ +  D +   L  +  +R        +++ NH
Sbjct: 238 FFADQPIQIYEKIVSGKVR---FPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH 294

Query: 236 EFIQRHDTD 244
           ++    D  
Sbjct: 295 KWFATTDWI 303

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 7e-39
 Identities = 48/238 (20%), Positives = 85/238 (35%), Gaps = 39/238 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           M Q     +++  G   K   + I+ EY   G++   +R +    S  ++  +L     G
Sbjct: 63  MGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAG 122

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           ++YL     +HRD                                 L A NIL+N+    
Sbjct: 123 MKYLANMNYVHRD---------------------------------LAARNILVNSNLVC 149

Query: 121 KLADFGVAGQLTDTMAKRNT---VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM-AE 176
           K++DFG++  L D      T         W APE I    +   +D+WS GI   E+   
Sbjct: 150 KVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTY 209

Query: 177 GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN 234
           G+ PY ++     +  I          P          + +C  +    R   +++++
Sbjct: 210 GERPYWELSNHEVMKAINDGFRLPT--PMDCPSAIYQLMMQCWQQERARRPKFADIVS 265

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (342), Expect = 8e-39
 Identities = 53/284 (18%), Positives = 95/284 (33%), Gaps = 72/284 (25%)

Query: 1   MQQCDSPYVVKYYGSY----FKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCD 56
           + +     ++           +      ++ +     +  +  L+ + LS D I   L  
Sbjct: 60  LLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKL--LKTQHLSNDHICYFLYQ 117

Query: 57  TLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT 116
            L+GL+Y+H    +HRD+                                 K  N+LLNT
Sbjct: 118 ILRGLKYIHSANVLHRDL---------------------------------KPSNLLLNT 144

Query: 117 EGHAKLADFGVAGQLT---DTMAKRNTVIGTPFWMAPEVI-QEIGYDCVADMWSLGITAL 172
               K+ DFG+A       D        + T ++ APE++    GY    D+WS+G    
Sbjct: 145 TCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILA 204

Query: 173 EMAEGKPPYGDIHPMRAIFMI----------------------------PTKPPPSFREP 204
           EM   +P +   H +  +  I                                 P  R  
Sbjct: 205 EMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLF 264

Query: 205 DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQN 248
                + +D + + L  NP +R    + L H +++++  DPS  
Sbjct: 265 PNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQY-YDPSDE 307

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (339), Expect = 1e-38
 Identities = 53/251 (21%), Positives = 92/251 (36%), Gaps = 52/251 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---------------KKTL 45
            +    P ++   G+      L++ +EY   G++ D +R                   TL
Sbjct: 65  CKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTL 124

Query: 46  SEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLF 105
           S  ++     D  +G++YL  ++ IHRD                                
Sbjct: 125 SSQQLLHFAADVARGMDYLSQKQFIHRD-------------------------------- 152

Query: 106 RLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMW 165
            L A NIL+     AK+ADFG++ +  +   K+        WMA E +    Y   +D+W
Sbjct: 153 -LAARNILVGENYVAKIADFGLS-RGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVW 210

Query: 166 SLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE 224
           S G+   E+ + G  PY  +        +P         P     E  D + +C  + P 
Sbjct: 211 SYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEK--PLNCDDEVYDLMRQCWREKPY 268

Query: 225 ERATASEMLNH 235
           ER + +++L  
Sbjct: 269 ERPSFAQILVS 279

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  132 bits (333), Expect = 5e-38
 Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 38/236 (16%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSD-IMRLRKKTLSEDEIATILCDTLK 59
           M++   P +V+  G   +    +I+ E+   G++ D +    ++ +S   +  +      
Sbjct: 67  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 126

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EYL  +  IHRD                                 L A N L+     
Sbjct: 127 AMEYLEKKNFIHRD---------------------------------LAARNCLVGENHL 153

Query: 120 AKLADFGVAGQLTDTMAKRNT-VIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMA-EG 177
            K+ADFG++  +T      +        W APE +    +   +D+W+ G+   E+A  G
Sbjct: 154 VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG 213

Query: 178 KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML 233
             PY  I   +   ++          P+    +  + +  C   NP +R + +E+ 
Sbjct: 214 MSPYPGIDLSQVYELLEKDYRMER--PEGCPEKVYELMRACWQWNPSDRPSFAEIH 267

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 1e-37
 Identities = 49/262 (18%), Positives = 91/262 (34%), Gaps = 54/262 (20%)

Query: 4   CDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKT-----------------LS 46
            +   +V   G+        ++ EYC  G + + +R ++ +                 L 
Sbjct: 84  GNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALD 143

Query: 47  EDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFR 106
            +++ +      KG+ +L  +  IHRD+ A                              
Sbjct: 144 LEDLLSFSYQVAKGMAFLASKNCIHRDLAAR----------------------------- 174

Query: 107 LKAGNILLNTEGHAKLADFGVAGQLTD--TMAKRNTVIGTPFWMAPEVIQEIGYDCVADM 164
               NILL      K+ DFG+A  + +      +        WMAPE I    Y   +D+
Sbjct: 175 ----NILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDV 230

Query: 165 WSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPE 224
           WS GI   E+           P+ + F    K       P+    E  D +  C   +P 
Sbjct: 231 WSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPL 290

Query: 225 ERATASEMLNHEFIQRHDTDPS 246
           +R T  +++  + I++  ++ +
Sbjct: 291 KRPTFKQIV--QLIEKQISEST 310

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 1e-36
 Identities = 61/262 (23%), Positives = 96/262 (36%), Gaps = 55/262 (20%)

Query: 1   MQQCDSPYVVKYYGSYFK-NTDLWIVMEYCGAGSVSDIMR---------------LRKKT 44
           +       VV   G+  K    L +++E+C  G++S  +R               L K  
Sbjct: 71  IHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDF 130

Query: 45  LSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTL 104
           L+ + +        KG+E+L  R+ IHRD                               
Sbjct: 131 LTLEHLICYSFQVAKGMEFLASRKCIHRD------------------------------- 159

Query: 105 FRLKAGNILLNTEGHAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYDCVA 162
             L A NILL+ +   K+ DFG+A  +       ++        WMAPE I +  Y   +
Sbjct: 160 --LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQS 217

Query: 163 DMWSLGITALEMAEG-KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVK 221
           D+WS G+   E+      PY  +           +     R PD  TPE    +  C   
Sbjct: 218 DVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTR-MRAPDYTTPEMYQTMLDCWHG 276

Query: 222 NPEERATASEMLNH--EFIQRH 241
            P +R T SE++ H    +Q +
Sbjct: 277 EPSQRPTFSELVEHLGNLLQAN 298

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 3e-36
 Identities = 54/288 (18%), Positives = 92/288 (31%), Gaps = 77/288 (26%)

Query: 1   MQQCDSPYVVKYYGSYF--------KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIAT 52
           +Q      VV                   +++V ++C       +  +  K  +  EI  
Sbjct: 63  LQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK-FTLSEIKR 121

Query: 53  ILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNI 112
           ++   L GL Y+H  + +HRD                                 +KA N+
Sbjct: 122 VMQMLLNGLYYIHRNKILHRD---------------------------------MKAANV 148

Query: 113 LLNTEGHAKLADFGVAGQL----TDTMAKRNTVIGTPFWMAPEVIQ-EIGYDCVADMWSL 167
           L+  +G  KLADFG+A            +    + T ++  PE++  E  Y    D+W  
Sbjct: 149 LITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGA 208

Query: 168 GITALEMAEGKPPYGDIHPMRAIFMI-----------------------------PTKPP 198
           G    EM    P          + +I                               +  
Sbjct: 209 GCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKV 268

Query: 199 PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPS 246
               +  V  P  +D + + LV +P +R  + + LNH+F    D  PS
Sbjct: 269 KDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFW-SDPMPS 315

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  128 bits (321), Expect = 4e-36
 Identities = 39/259 (15%), Positives = 75/259 (28%), Gaps = 53/259 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD-LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLK 59
            +       +          D   +VME  G  S+ D+     +  S   +  +    + 
Sbjct: 56  YKMMQGGVGIPTIRWCGAEGDYNVMVMELLG-PSLEDLFNFCSRKFSLKTVLLLADQMIS 114

Query: 60  GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGH 119
            +EY+H +  IHRD+                                 K  N L+     
Sbjct: 115 RIEYIHSKNFIHRDV---------------------------------KPDNFLMGLGKK 141

Query: 120 AKLA---DFGVAGQLTDT-------MAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGI 169
             L    DFG+A +  D          +   + GT  + +      I      D+ SLG 
Sbjct: 142 GNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGY 201

Query: 170 TALEMAEGKPPYGDIHPMRAIFMI-----PTKPPPSFREPDVWTPEFIDFVSRCLVKNPE 224
             +    G  P+  +                   P       +  EF  +++ C     +
Sbjct: 202 VLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFD 261

Query: 225 ERATAS---EMLNHEFIQR 240
           ++   S   ++  + F ++
Sbjct: 262 DKPDYSYLRQLFRNLFHRQ 280

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 4e-36
 Identities = 44/247 (17%), Positives = 91/247 (36%), Gaps = 47/247 (19%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKK---------TLSEDEIA 51
           M++ +  +VV+  G   +     ++ME    G +   +R  +            S  ++ 
Sbjct: 77  MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMI 136

Query: 52  TILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGN 111
            +  +   G+ YL+  + +HRD                                 L A N
Sbjct: 137 QMAGEIADGMAYLNANKFVHRD---------------------------------LAARN 163

Query: 112 ILLNTEGHAKLADFGVAGQL--TDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGI 169
            ++  +   K+ DFG+   +  TD   K    +    WM+PE +++  +   +D+WS G+
Sbjct: 164 CMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGV 223

Query: 170 TALEMAEG-KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT 228
              E+A   + PY  +   + +  +          PD       + +  C   NP+ R +
Sbjct: 224 VLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDK--PDNCPDMLFELMRMCWQYNPKMRPS 281

Query: 229 ASEMLNH 235
             E+++ 
Sbjct: 282 FLEIISS 288

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (320), Expect = 7e-36
 Identities = 61/251 (24%), Positives = 110/251 (43%), Gaps = 47/251 (18%)

Query: 5   DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYL 64
            SP++V  + ++   T L ++++Y   G +   +  +++  +E E+   + + +  LE+L
Sbjct: 87  QSPFLVTLHYAFQTETKLHLILDYINGGELFTHLS-QRERFTEHEVQIYVGEIVLALEHL 145

Query: 65  HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLAD 124
           H    I+RDIK                                   NILL++ GH  L D
Sbjct: 146 HKLGIIYRDIKLE---------------------------------NILLDSNGHVVLTD 172

Query: 125 FGVAGQLTDTMAKR-NTVIGTPFWMAPEVIQ--EIGYDCVADMWSLGITALEMAEGKPPY 181
           FG++ +      +R     GT  +MAP++++  + G+D   D WSLG+   E+  G  P+
Sbjct: 173 FGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPF 232

Query: 182 ---GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER-----ATASEML 233
              G+ +    I     K  P +  P   +    D + R L+K+P++R       A E+ 
Sbjct: 233 TVDGEKNSQAEISRRILKSEPPY--PQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIK 290

Query: 234 NHEFIQRHDTD 244
            H F Q+ + D
Sbjct: 291 EHLFFQKINWD 301

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 2e-35
 Identities = 47/253 (18%), Positives = 92/253 (36%), Gaps = 53/253 (20%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTL 45
                   ++   G+  ++  L++++EY   G++ + ++ R+               + L
Sbjct: 73  KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 132

Query: 46  SEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLF 105
           S  ++ +      +G+EYL  ++ IHRD+ A                             
Sbjct: 133 SSKDLVSCAYQVARGMEYLASKKCIHRDLAAR---------------------------- 164

Query: 106 RLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNT--VIGTPFWMAPEVIQEIGYDCVAD 163
                N+L+  +   K+ADFG+A  +      + T        WMAPE + +  Y   +D
Sbjct: 165 -----NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSD 219

Query: 164 MWSLGITALEM-AEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKN 222
           +WS G+   E+   G  PY  +       ++          P   T E    +  C    
Sbjct: 220 VWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDK--PSNCTNELYMMMRDCWHAV 277

Query: 223 PEERATASEMLNH 235
           P +R T  +++  
Sbjct: 278 PSQRPTFKQLVED 290

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 5e-35
 Identities = 62/274 (22%), Positives = 101/274 (36%), Gaps = 74/274 (27%)

Query: 1   MQQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL 54
           ++      V+     +  +      TD ++VM + G   +  +M+   + L ED I  ++
Sbjct: 71  LKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMG-TDLGKLMK--HEKLGEDRIQFLV 127

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
              LKGL Y+H    IHRD                                 LK GN+ +
Sbjct: 128 YQMLKGLRYIHAAGIIHRD---------------------------------LKPGNLAV 154

Query: 115 NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCVADMWSLGITALE 173
           N +   K+ DFG+A Q    M      + T ++ APEVI     Y    D+WS+G    E
Sbjct: 155 NEDCELKILDFGLARQADSEM---TGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAE 211

Query: 174 MAEGKPPYGDIHPM---RAIFMIPTKPPPSFREPDVW----------------------- 207
           M  GK  +     +   + I  +   PP  F +                           
Sbjct: 212 MITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILT 271

Query: 208 --TPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
             +P  ++ + + LV + E+R TA E L H + +
Sbjct: 272 NASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFE 305

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 3e-34
 Identities = 52/274 (18%), Positives = 89/274 (32%), Gaps = 76/274 (27%)

Query: 1   MQQCDSPYVVKYYGSYFKN----TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCD 56
                   ++ +  +  K+    T LW+V +Y   GS+ D   L + T++ + +  +   
Sbjct: 51  TVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDY--LNRYTVTVEGMIKLALS 108

Query: 57  TLKGLEYLHL--------RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLK 108
           T  GL +LH+            HRD+K+                                
Sbjct: 109 TASGLAHLHMEIVGTQGKPAIAHRDLKSK------------------------------- 137

Query: 109 AGNILLNTEGHAKLADFGVAGQLTD----TMAKRNTVIGTPFWMAPEVIQE------IGY 158
             NIL+   G   +AD G+A +            N  +GT  +MAPEV+ +         
Sbjct: 138 --NILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFES 195

Query: 159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFRE--------------P 204
              AD++++G+   E+A      G     +  +       PS  E              P
Sbjct: 196 FKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIP 255

Query: 205 DVWTP-----EFIDFVSRCLVKNPEERATASEML 233
           + W            +  C   N   R TA  + 
Sbjct: 256 NRWQSCEALRVMAKIMRECWYANGAARLTALRIK 289

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 2e-32
 Identities = 51/273 (18%), Positives = 85/273 (31%), Gaps = 63/273 (23%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +++     +V+ +     +  L +V E+C                  + + + L   LKG
Sbjct: 55  LKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDL-DPEIVKSFLFQLLKG 113

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           L + H R  +HRD+K                                   N+L+N  G  
Sbjct: 114 LGFCHSRNVLHRDLKPQ---------------------------------NLLINRNGEL 140

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCVADMWSLGITALEMAEGKP 179
           KLA+FG+A      +   +  + T ++  P+V+     Y    DMWS G    E+A    
Sbjct: 141 KLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGR 200

Query: 180 PY----GDIHPMRAIFMIPTKPPPS-----------------------FREPDVWTPEFI 212
           P          ++ IF +   P                                      
Sbjct: 201 PLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGR 260

Query: 213 DFVSRCLVKNPEERATASEMLNHEFIQRHDTDP 245
           D +   L  NP +R +A E L H +       P
Sbjct: 261 DLLQNLLKCNPVQRISAEEALQHPYFSDF-CPP 292

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  117 bits (295), Expect = 2e-32
 Identities = 35/253 (13%), Positives = 73/253 (28%), Gaps = 44/253 (17%)

Query: 7   PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL 66
             +   Y    +     +V++  G  S+ D++ L  +  S   +A      L  ++ +H 
Sbjct: 61  TGIPNVYYFGQEGLHNVLVIDLLG-PSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHE 119

Query: 67  RRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFG 126
           +  ++RDIK                  N +             G           + DFG
Sbjct: 120 KSLVYRDIKP----------------DNFLI------------GRPNSKNANMIYVVDFG 151

Query: 127 VAGQLTDTMAK-------RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGKP 179
           +     D + K       +  + GT  +M+             D+ +LG   +    G  
Sbjct: 152 MVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSL 211

Query: 180 PYGDIHPMRAIFMI----PTKPPPSFRE-PDVWTPEFIDFVSRCLVKNPEERATAS---E 231
           P+  +               K     RE    +  EF  ++        +          
Sbjct: 212 PWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQG 271

Query: 232 MLNHEFIQRHDTD 244
           + +    + + T+
Sbjct: 272 LFSKVLERLNTTE 284

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 3e-32
 Identities = 53/292 (18%), Positives = 99/292 (33%), Gaps = 84/292 (28%)

Query: 1   MQQCDSPYVVKYYGSYFKN------TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATIL 54
           M+  +   ++     +          D+++VME   A     + ++ +  L  + ++ +L
Sbjct: 70  MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDAN----LCQVIQMELDHERMSYLL 125

Query: 55  CDTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILL 114
              L G+++LH    IHRD+K                                   NI++
Sbjct: 126 YQMLCGIKHLHSAGIIHRDLKPS---------------------------------NIVV 152

Query: 115 NTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEM 174
            ++   K+ DFG+A     +       + T ++ APEVI  +GY    D+WS+G    EM
Sbjct: 153 KSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 211

Query: 175 AEGKPPYGDIHP---MRAIFMIPTKPPPSF------------------------------ 201
              K  +           +      P P F                              
Sbjct: 212 VRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDS 271

Query: 202 ------REPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPSQ 247
                     +   +  D +S+ LV +P +R +  + L H +I     DP++
Sbjct: 272 LFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVW-YDPAE 322

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score =  115 bits (289), Expect = 2e-31
 Identities = 49/278 (17%), Positives = 91/278 (32%), Gaps = 77/278 (27%)

Query: 1   MQQCDSPYVVKYYGSYFKNTD--LWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTL 58
                 P ++               +V E+        +     +TL++ +I   + + L
Sbjct: 84  ENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLY----QTLTDYDIRFYMYEIL 139

Query: 59  KGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG 118
           K L+Y H    +HRD+K                                   N++++ E 
Sbjct: 140 KALDYCHSMGIMHRDVKPH---------------------------------NVMIDHEH 166

Query: 119 -HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-GYDCVADMWSLGITALEMAE 176
              +L D+G+A +      + N  + + ++  PE++ +   YD   DMWSLG     M  
Sbjct: 167 RKLRLIDWGLA-EFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIF 225

Query: 177 GKPPY-----------------GDIHPMRAIFMIPTKPPPSFRE---------------- 203
            K P+                 G       I     +  P F +                
Sbjct: 226 RKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHS 285

Query: 204 --PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
               + +PE +DF+ + L  + + R TA E + H +  
Sbjct: 286 ENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFY 323

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 2e-29
 Identities = 49/275 (17%), Positives = 103/275 (37%), Gaps = 72/275 (26%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLW-----IVMEYCGAGSVSDIMRLRKKTLSEDEIATILC 55
           ++      V+     +     L       ++ +     +++I++   + L++D +  ++ 
Sbjct: 71  LKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVK--CQKLTDDHVQFLIY 128

Query: 56  DTLKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
             L+GL+Y+H    IHRD+                                 K  N+ +N
Sbjct: 129 QILRGLKYIHSADIIHRDL---------------------------------KPSNLAVN 155

Query: 116 TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YDCVADMWSLGITALEM 174
            +   K+ DFG+A    D M      + T ++ APE++     Y+   D+WS+G    E+
Sbjct: 156 EDCELKILDFGLARHTDDEM---TGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAEL 212

Query: 175 AEGKPPY---GDIHPMRAIFMIPTKPP----------------------PSFREPDVW-- 207
             G+  +     I  ++ I  +   P                       P     +V+  
Sbjct: 213 LTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIG 272

Query: 208 -TPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH 241
             P  +D + + LV + ++R TA++ L H +  ++
Sbjct: 273 ANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQY 307

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.0 bits (245), Expect = 7e-25
 Identities = 48/292 (16%), Positives = 86/292 (29%), Gaps = 86/292 (29%)

Query: 1   MQQCDSPYVVKYYGSYF----KNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCD 56
                + +++K    +         + +V E  G   ++ I +   + +    +  I   
Sbjct: 74  EDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQ 133

Query: 57  TLKGLEYLHLRRKI-HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN 115
            L GL+Y+H R  I H DIK                                   N+L+ 
Sbjct: 134 LLLGLDYMHRRCGIIHTDIKPE---------------------------------NVLME 160

Query: 116 TEGH-AKLADFGVA--GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITAL 172
                  L    +A  G            I T  + +PEV+    + C AD+WS      
Sbjct: 161 IVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIF 220

Query: 173 EMAEGKPPY---------GDIHPMRAIFMIPTKPPP------------------------ 199
           E+  G   +          D   +  I  +  + P                         
Sbjct: 221 ELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISK 280

Query: 200 ------------SFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQ 239
                        ++       E  DF+S  L  +P +RA A  ++NH +++
Sbjct: 281 LKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLK 332

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 46.7 bits (110), Expect = 4e-07
 Identities = 21/176 (11%), Positives = 44/176 (25%), Gaps = 55/176 (31%)

Query: 1   MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKG 60
           +Q+     V K Y          ++ME   A  +  +          +    +L   L+ 
Sbjct: 68  LQKLQGLAVPKVYAWE----GNAVLMELIDAKELYRVR--------VENPDEVLDMILEE 115

Query: 61  LEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHA 120
           +   + R  +H D+                                      +L +E   
Sbjct: 116 VAKFYHRGIVHGDLSQY----------------------------------NVLVSEEGI 141

Query: 121 KLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI---GYDCVADMWSLGITALE 173
            + DF  + ++ +   +               I       Y    D+ S     L+
Sbjct: 142 WIIDFPQSVEVGEEGWREI------LERDVRNIITYFSRTYRTEKDINSAIDRILQ 191

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.59
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	96.49
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	95.2
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	91.81
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	91.07

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-54  Score=357.77  Aligned_cols=206  Identities=43%  Similarity=0.841  Sum_probs=182.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.+++..|+|||||+||+|.+++..  ..+++.+++.++.||+.||+|||++||+|||||     
T Consensus        71 l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~~~~--~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiK-----  143 (293)
T d1yhwa1          71 MRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTE--TCMDEGQIAAVCRECLQALEFLHSNQVIHRDIK-----  143 (293)
T ss_dssp             HHHCCCTTBCCEEEEEEETTEEEEEEECCTTCBHHHHHHH--SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HHhCCCCCEeeEeEEEEECCEEEEEEEecCCCcHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCc-----
Confidence            3578999999999999999999999999999999998763  579999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.+||+|||+++.............||+.|+|||++.+.+++.
T Consensus       144 ----------------------------p~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~  195 (293)
T d1yhwa1         144 ----------------------------SDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGP  195 (293)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSSSCBCT
T ss_pred             ----------------------------HHHeEECCCCcEeeccchhheeeccccccccccccCCCccChhhhcCCCCCc
Confidence                                        8899999999999999999987655444555667999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++||||+||++|+|++|.+||.+.+.......+.....+....+..+++++.+||.+||+.||++|||++|+++||||+.
T Consensus       196 ~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~Hp~~~~  275 (293)
T d1yhwa1         196 KVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKI  275 (293)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTTCGGGGG
T ss_pred             hhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhCC
Confidence            99999999999999999999988776665554444444444556778999999999999999999999999999999985


Q ss_pred             c
Q psy3253         241 H  241 (251)
Q Consensus       241 ~  241 (251)
                      .
T Consensus       276 ~  276 (293)
T d1yhwa1         276 A  276 (293)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-54  Score=358.00  Aligned_cols=207  Identities=43%  Similarity=0.873  Sum_probs=183.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++.+++.+|+|||||++|+|.+++......+++.+++.++.||+.||.|||++||+|||||     
T Consensus        63 l~~l~HpnIv~l~~~~~~~~~~~lvmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiK-----  137 (288)
T d2jfla1          63 LASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLK-----  137 (288)
T ss_dssp             HHHCCCTTBCCEEEEEEETTEEEEEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HHhCCCCCCCeEEEEEeeCCeEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecC-----
Confidence            357899999999999999999999999999999999987677889999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc-----c
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ-----E  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~  155 (251)
                                                  |+||+++.++.+||+|||+|+.............||+.|+|||++.     +
T Consensus       138 ----------------------------p~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~  189 (288)
T d2jfla1         138 ----------------------------AGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKD  189 (288)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCSTTT
T ss_pred             ----------------------------hhheeECCCCCEEEEechhhhccCCCcccccccccccccCCHHHHhhcccCC
Confidence                                        8899999999999999999976554433445567899999999983     4


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      ..++.++||||+||++|+|++|.+||.+.+.......+.....+....+..+++++.+||.+||+.||++|||++|+++|
T Consensus       190 ~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~h  269 (288)
T d2jfla1         190 RPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQH  269 (288)
T ss_dssp             SSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred             CCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            56889999999999999999999999888777766665555555555667889999999999999999999999999999


Q ss_pred             hhhhh
Q psy3253         236 EFIQR  240 (251)
Q Consensus       236 p~~~~  240 (251)
                      |||+.
T Consensus       270 p~~~~  274 (288)
T d2jfla1         270 PFVTV  274 (288)
T ss_dssp             GGGCC
T ss_pred             cccCC
Confidence            99974

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-53  Score=349.96  Aligned_cols=203  Identities=32%  Similarity=0.544  Sum_probs=179.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++.+++..|+|||||++|+|.+++. ....+++..++.++.||+.||+|||++||+|||||     
T Consensus        60 l~~l~hpnIv~~~~~~~~~~~~~ivmEy~~~g~L~~~l~-~~~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiK-----  133 (263)
T d2j4za1          60 QSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ-KLSKFDEQRTATYITELANALSYCHSKRVIHRDIK-----  133 (263)
T ss_dssp             HHTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----
T ss_pred             HHhcCCCCCCeEEEEEEECCEEEEEEeecCCCcHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeec-----
Confidence            357899999999999999999999999999999999997 45689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.+||+|||+++.....  ......||+.|+|||++.+..++.
T Consensus       134 ----------------------------p~Nill~~~~~~kl~DFG~a~~~~~~--~~~~~~Gt~~Y~APE~~~~~~~~~  183 (263)
T d2j4za1         134 ----------------------------PENLLLGSAGELKIADFGWSVHAPSS--RRTTLCGTLDYLPPEMIEGRMHDE  183 (263)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCCSCSCCCCC--CCEETTEEGGGCCHHHHTTCCCCT
T ss_pred             ----------------------------cccceecCCCCEeecccceeeecCCC--cccccCCCCcccCHHHHcCCCCCc
Confidence                                        88999999999999999999765433  234457899999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ++||||+||++|+|++|+.||.+.+.......+....   ...+..+++++.+||.+||+.||++|||++|+++||||+.
T Consensus       184 ~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~---~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~hp~~~~  260 (263)
T d2j4za1         184 KVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVE---FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITA  260 (263)
T ss_dssp             THHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTC---CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTCHHHHH
T ss_pred             hhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHcCC---CCCCccCCHHHHHHHHHHccCCHhHCcCHHHHHcCcCcCC
Confidence            9999999999999999999998877666655544432   2345678999999999999999999999999999999986


Q ss_pred             cc
Q psy3253         241 HD  242 (251)
Q Consensus       241 ~~  242 (251)
                      ..
T Consensus       261 ~s  262 (263)
T d2j4za1         261 NS  262 (263)
T ss_dssp             HC
T ss_pred             cC
Confidence            43

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-53  Score=351.96  Aligned_cols=206  Identities=23%  Similarity=0.393  Sum_probs=173.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++.+++..|+|||||++|+|.+++. ....+++.+++.++.||+.||+|||++||+|||||     
T Consensus        57 l~~l~HpnIv~~~~~~~~~~~~~ivmEy~~gg~L~~~l~-~~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiK-----  130 (271)
T d1nvra_          57 NKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIE-PDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIK-----  130 (271)
T ss_dssp             HHTCCCTTBCCEEEEEEETTEEEEEEECCTTEEGGGGSB-TTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----
T ss_pred             HHhCCCCCEeeEeeeeccCceeEEEEeccCCCcHHHHHh-cCCCCCHHHHHHHHHHHHHHHHHHHHcCCccCccc-----
Confidence            467899999999999999999999999999999999986 56789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--ccccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.+||+|||+|+......  .......||+.|+|||++.+.++
T Consensus       131 ----------------------------p~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~  182 (271)
T d1nvra_         131 ----------------------------PENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREF  182 (271)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSB
T ss_pred             ----------------------------HHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCC
Confidence                                        889999999999999999998654321  22344578999999999988776


Q ss_pred             -CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 -DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 -~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                       +.++||||+||++|+|++|++||......................+..+++++.+||.+||+.||++|||++|+++|||
T Consensus       183 ~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~hpw  262 (271)
T d1nvra_         183 HAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRW  262 (271)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTT
T ss_pred             CCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHh
Confidence             5689999999999999999999965543332222222222233334668999999999999999999999999999999


Q ss_pred             hhh
Q psy3253         238 IQR  240 (251)
Q Consensus       238 ~~~  240 (251)
                      |++
T Consensus       263 f~~  265 (271)
T d1nvra_         263 YNK  265 (271)
T ss_dssp             TTC
T ss_pred             hCc
Confidence            974

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-52  Score=348.24  Aligned_cols=208  Identities=27%  Similarity=0.489  Sum_probs=180.0

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||++++++|.+++.+|+|||||+||+|.+++. ..+.+++..++.++.|++.||+|||++||+|||||     
T Consensus        62 l~~l~HpnIv~l~~~~~~~~~~~ivmEy~~gg~L~~~~~-~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiK-----  135 (288)
T d1uu3a_          62 MSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIR-KIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLK-----  135 (288)
T ss_dssp             HHHCCSTTBCCEEEEEECSSEEEEEECCCTTEEHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----
T ss_pred             HHHcCCCCeeEEEEEEEECCEEEEEEEccCCCCHHHhhh-ccCCCCHHHHHHHHHHHHHHHHhhccccEEcCcCC-----
Confidence            357899999999999999999999999999999999987 45789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--ccccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.+||+|||+|+......  .......||+.|+|||++.+..+
T Consensus       136 ----------------------------p~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~  187 (288)
T d1uu3a_         136 ----------------------------PENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSA  187 (288)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCC
T ss_pred             ----------------------------ccccccCCCceEEecccccceecccCCcccccccccCCccccCceeeccCCC
Confidence                                        889999999999999999998664322  22334568999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHH------H
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASE------M  232 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e------v  232 (251)
                      +.++||||+||++|+|++|..||.+.+.......+....   ...+..+++++.+||.+||+.||++|||++|      +
T Consensus       188 ~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~---~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i  264 (288)
T d1uu3a_         188 CKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLE---YDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPL  264 (288)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTC---CCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGTCHHHH
T ss_pred             CcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHHcCC---CCCCccCCHHHHHHHHHHccCCHhHCcCHHHHcCCHHH
Confidence            999999999999999999999998877766665554442   2335678999999999999999999999998      5


Q ss_pred             hcChhhhhccCCC
Q psy3253         233 LNHEFIQRHDTDP  245 (251)
Q Consensus       233 l~hp~~~~~~~~~  245 (251)
                      ++||||+..+|+.
T Consensus       265 ~~Hpff~~i~w~~  277 (288)
T d1uu3a_         265 KAHPFFESVTWEN  277 (288)
T ss_dssp             HTSGGGTTCCCTT
T ss_pred             HcCCccCCCCHHH
Confidence            8899999998863

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-51  Score=340.32  Aligned_cols=201  Identities=30%  Similarity=0.541  Sum_probs=168.9

Q ss_pred             CCCCCCCccceeeeeEee----CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC--ccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR--KIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~----~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~--iiH~di   74 (251)
                      |++++|||||+++++|.+    +..+|+|||||++|+|.+++. +...+++.+++.++.||+.||.|||++|  |+||||
T Consensus        62 l~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l~-~~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDi  140 (270)
T d1t4ha_          62 LKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK-RFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDL  140 (270)
T ss_dssp             HTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCC
T ss_pred             HHhCCCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHHh-ccccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCc
Confidence            578999999999999975    356899999999999999997 4568999999999999999999999998  999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecC-CCCCeEecccccccccCccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN-TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~-~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  153 (251)
                      |                                 |+||+++ .++.+||+|||+++.....  ......||+.|+|||++
T Consensus       141 K---------------------------------p~NILl~~~~~~~Kl~DFGla~~~~~~--~~~~~~GT~~Y~aPE~~  185 (270)
T d1t4ha_         141 K---------------------------------CDNIFITGPTGSVKIGDLGLATLKRAS--FAKAVIGTPEFMAPEMY  185 (270)
T ss_dssp             C---------------------------------GGGEEESSTTSCEEECCTTGGGGCCTT--SBEESCSSCCCCCGGGG
T ss_pred             C---------------------------------hhhceeeCCCCCEEEeecCcceeccCC--ccCCcccCccccCHHHh
Confidence            8                                 8898886 4789999999999754332  23345789999999998


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhh-hhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         154 QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAI-FMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       154 ~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      .+ +++.++||||+||++|+|++|+.||.+....... ..+..... ....+...++++.++|.+||+.||++|||++|+
T Consensus       186 ~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~el  263 (270)
T d1t4ha_         186 EE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVK-PASFDKVAIPEVKEIIEGCIRQNKDERYSIKDL  263 (270)
T ss_dssp             GT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCC-CGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHH
T ss_pred             CC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcCCC-CcccCccCCHHHHHHHHHHccCCHhHCcCHHHH
Confidence            65 6999999999999999999999999765544333 33333322 222345678999999999999999999999999


Q ss_pred             hcChhhh
Q psy3253         233 LNHEFIQ  239 (251)
Q Consensus       233 l~hp~~~  239 (251)
                      ++||||+
T Consensus       264 l~Hp~fk  270 (270)
T d1t4ha_         264 LNHAFFQ  270 (270)
T ss_dssp             HTSGGGC
T ss_pred             hCCcccC
Confidence            9999996

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-51  Score=349.57  Aligned_cols=206  Identities=29%  Similarity=0.511  Sum_probs=183.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||++++++|+++..+|+|||||+||+|.+++. ....+++..++.++.||+.||.|||++||+|||||     
T Consensus        59 l~~l~hp~Iv~l~~~~~~~~~~~iv~ey~~gg~L~~~~~-~~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlK-----  132 (337)
T d1o6la_          59 LQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLS-RERVFTEERARFYGAEIVSALEYLHSRDVVYRDIK-----  132 (337)
T ss_dssp             HHSCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHH-HHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-----
T ss_pred             HHhCCCCCEEEEEeeeccccccccceeccCCCchhhhhh-cccCCcHHHHHHHHHHHhhhhhhhhhcCccccccC-----
Confidence            457899999999999999999999999999999999987 45789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.+|.+||+|||+|+.............||+.|+|||++.+.+++.
T Consensus       133 ----------------------------P~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~  184 (337)
T d1o6la_         133 ----------------------------LENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGR  184 (337)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCT
T ss_pred             ----------------------------HHHeEecCCCCEEEeecccccccccCCcccccceeCHHHhhhhhccCCCCCh
Confidence                                        9999999999999999999987655444555677999999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl~h  235 (251)
                      ++|+||+||++|+|++|++||.+.+.......+....   ...+..+++++.+||.+||+.||++|++     ++|+++|
T Consensus       185 ~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~---~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~H  261 (337)
T d1o6la_         185 AVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEE---IRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEH  261 (337)
T ss_dssp             THHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC---CCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTS
T ss_pred             hhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCC---CCCCccCCHHHHHHHHhhccCCchhhcccccccHHHHHcC
Confidence            9999999999999999999998887766665554442   2346778999999999999999999994     9999999


Q ss_pred             hhhhhccC
Q psy3253         236 EFIQRHDT  243 (251)
Q Consensus       236 p~~~~~~~  243 (251)
                      |||++.+|
T Consensus       262 p~f~~i~~  269 (337)
T d1o6la_         262 RFFLSINW  269 (337)
T ss_dssp             GGGTTCCH
T ss_pred             cccccCCH
Confidence            99988765

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.7e-51  Score=345.28  Aligned_cols=206  Identities=25%  Similarity=0.418  Sum_probs=166.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.+++.+|+|||||+||+|.+++. ....+++.++..++.||+.||.|||++||+|||||     
T Consensus        61 l~~l~HpnIv~l~~~~~~~~~~~lvmE~~~gg~L~~~l~-~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiK-----  134 (307)
T d1a06a_          61 LHKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIV-EKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLK-----  134 (307)
T ss_dssp             HHTCCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-TCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEeccCCCcHHHhhh-cccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEec-----
Confidence            457899999999999999999999999999999999997 56789999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecC---CCCCeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN---TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~---~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||++.   .++.+||+|||+++..... .......||+.|+|||++.+..
T Consensus       135 ----------------------------p~Nil~~~~~~~~~vkl~DFG~a~~~~~~-~~~~~~~GT~~y~APE~~~~~~  185 (307)
T d1a06a_         135 ----------------------------PENLLYYSLDEDSKIMISDFGLSKMEDPG-SVLSTACGTPGYVAPEVLAQKP  185 (307)
T ss_dssp             ----------------------------GGGEEESSSSTTCCEEECCC-------------------CTTSCHHHHTTCC
T ss_pred             ----------------------------ccceeecccCCCceEEEeccceeEEccCC-CeeeeeeeCccccCcHHHcCCC
Confidence                                        6677763   4678999999999765433 2334457899999999999999


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      ++.++||||+||++|+|++|.+||.+.........+.... ......+..+|+++.+||.+||+.||++|||++|+++||
T Consensus       186 ~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp  265 (307)
T d1a06a_         186 YSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHP  265 (307)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHST
T ss_pred             CCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhHCcCHHHHhcCH
Confidence            9999999999999999999999998877666555444332 222334567899999999999999999999999999999


Q ss_pred             hhhhc
Q psy3253         237 FIQRH  241 (251)
Q Consensus       237 ~~~~~  241 (251)
                      ||+..
T Consensus       266 ~~~~~  270 (307)
T d1a06a_         266 WIAGD  270 (307)
T ss_dssp             TTTSS
T ss_pred             hhCCC
Confidence            99854

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-52  Score=341.72  Aligned_cols=203  Identities=28%  Similarity=0.539  Sum_probs=165.4

Q ss_pred             CCCCCCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhCC-----cc
Q psy3253           1 MQQCDSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRL---RKKTLSEDEIATILCDTLKGLEYLHLRR-----KI   70 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~---~~~~l~~~~~~~~~~~i~~~l~~LH~~~-----ii   70 (251)
                      |++++|||||++++++.+  ...+|+|||||++|+|.+++..   .+..+++..++.++.||+.||+|||++|     |+
T Consensus        57 l~~l~HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~Ii  136 (269)
T d2java1          57 LRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVL  136 (269)
T ss_dssp             TTSCCCTTBCCEEEEEEC----CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHCCCCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence            678999999999999864  4568999999999999999863   3568999999999999999999999976     99


Q ss_pred             ccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccc
Q psy3253          71 HRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAP  150 (251)
Q Consensus        71 H~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aP  150 (251)
                      |||||                                 |+||+++.++.+||+|||+++.............||+.|+||
T Consensus       137 HrDiK---------------------------------p~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~AP  183 (269)
T d2java1         137 HRDLK---------------------------------PANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSP  183 (269)
T ss_dssp             ---CC---------------------------------GGGEEECTTSCEEECCHHHHHHC-----------CCCSCCCH
T ss_pred             eCcCc---------------------------------hhhcCcCCCCcEEEeeccceeecccCCCccccCCCCcccCCH
Confidence            99988                                 899999999999999999998766544444556789999999


Q ss_pred             cccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         151 EVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       151 E~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      |++.+.+++.++|||||||++|+|++|+.||.+.+.......+.......  .+..+++++.+||.+||+.||++|||++
T Consensus       184 E~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~~~~~--~~~~~s~~l~~li~~~L~~dp~~Rps~~  261 (269)
T d2java1         184 EQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRR--IPYRYSDELNEIITRMLNLKDYHRPSVE  261 (269)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCC--CCTTSCHHHHHHHHHHTCSSGGGSCCHH
T ss_pred             HHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCC--CCcccCHHHHHHHHHHcCCChhHCcCHH
Confidence            99999999999999999999999999999998877766655554443322  3567899999999999999999999999


Q ss_pred             HHhcChhh
Q psy3253         231 EMLNHEFI  238 (251)
Q Consensus       231 evl~hp~~  238 (251)
                      |+++|||+
T Consensus       262 ell~hp~i  269 (269)
T d2java1         262 EILENPLI  269 (269)
T ss_dssp             HHHTSTTC
T ss_pred             HHHhCCcC
Confidence            99999995

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-52  Score=349.54  Aligned_cols=209  Identities=37%  Similarity=0.758  Sum_probs=173.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC-CccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLR-RKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~-~iiH~dik~~Ni   79 (251)
                      |++++|||||+++++|.++.++|+|||||+||+|.+++. +.+.+++..++.++.|++.||.|||++ ||+|||||    
T Consensus        58 l~~l~HpnIv~l~~~~~~~~~~~iVmEy~~gg~L~~~l~-~~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiK----  132 (322)
T d1s9ja_          58 LHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK-KAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVK----  132 (322)
T ss_dssp             GGGCCCTTBCCEEEEEECSSEEEEEEECCTTEEHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCS----
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCcHHHHHh-hcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccC----
Confidence            568999999999999999999999999999999999997 446799999999999999999999974 99999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                   |+||+++.++.+||+|||+|+.....  ......||+.|+|||++.+.+++
T Consensus       133 -----------------------------P~NILl~~~~~vkl~DFGla~~~~~~--~~~~~~GT~~Y~APEvl~~~~y~  181 (322)
T d1s9ja_         133 -----------------------------PSNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPERLQGTHYS  181 (322)
T ss_dssp             -----------------------------GGGEEECTTCCEEECCCCCCHHHHHH--TC---CCSSCCCCHHHHHCSCCC
T ss_pred             -----------------------------HHHeeECCCCCEEEeeCCCccccCCC--ccccccCCccccCchHHcCCCCC
Confidence                                         88999999999999999999765432  23456799999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc------------------------------------------CCCC
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI------------------------------------------PTKP  197 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~------------------------------------------~~~~  197 (251)
                      .++||||+||++|+|++|+.||.+.+........                                          ....
T Consensus       182 ~~~DiWSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (322)
T d1s9ja_         182 VQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEP  261 (322)
T ss_dssp             TTHHHHHHHHHHHHHHHSSCCSSCCCTTHHHHHC------------------------------CCCCHHHHHHHHHTSC
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHhhhhccC
Confidence            9999999999999999999999654432211100                                          0000


Q ss_pred             CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCCCC
Q psy3253         198 PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTDPS  246 (251)
Q Consensus       198 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~~~  246 (251)
                      ++. .....+++++.+||.+||+.||++|||++|+|+||||++.+++..
T Consensus       262 ~~~-~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~~~~~~~  309 (322)
T d1s9ja_         262 PPK-LPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKRSDAEEV  309 (322)
T ss_dssp             CCC-CCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHHHHSCC
T ss_pred             Ccc-CccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCcCCcccc
Confidence            001 112346889999999999999999999999999999998887653

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=6.1e-51  Score=347.73  Aligned_cols=208  Identities=22%  Similarity=0.399  Sum_probs=179.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.++..+|+|||||+||+|.+++......+++.+++.++.||+.||+|||++||+|||||     
T Consensus        80 l~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiK-----  154 (352)
T d1koba_          80 MNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIK-----  154 (352)
T ss_dssp             HTTCCSTTBCCEEEEEECSSEEEEEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccc-----
Confidence            578999999999999999999999999999999999887556689999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecC--CCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN--TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~--~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++  .++.+||+|||+|...... .......+|+.|+|||++.+..+
T Consensus       155 ----------------------------p~NILl~~~~~~~vkL~DFGla~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~  205 (352)
T d1koba_         155 ----------------------------PENIMCETKKASSVKIIDFGLATKLNPD-EIVKVTTATAEFAAPEIVDREPV  205 (352)
T ss_dssp             ----------------------------GGGEEESSTTCCCEEECCCTTCEECCTT-SCEEEECSSGGGCCHHHHTTCCB
T ss_pred             ----------------------------cccccccccCCCeEEEeecccceecCCC-CceeeccCcccccCHHHHcCCCC
Confidence                                        8888876  5678999999999876543 23344568999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++||||+||++|+|++|.+||.+.+.......+.... ......+..+++++.+||.+||+.||++|||++|+|+|||
T Consensus       206 ~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~Hp~  285 (352)
T d1koba_         206 GFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPW  285 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTT
T ss_pred             CCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHh
Confidence            999999999999999999999998877766655443322 2222345678999999999999999999999999999999


Q ss_pred             hhhcc
Q psy3253         238 IQRHD  242 (251)
Q Consensus       238 ~~~~~  242 (251)
                      |+...
T Consensus       286 ~~~~~  290 (352)
T d1koba_         286 LKGDH  290 (352)
T ss_dssp             TSSCC
T ss_pred             hCCCc
Confidence            98643

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-50  Score=340.39  Aligned_cols=203  Identities=42%  Similarity=0.796  Sum_probs=175.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++.++..+|+|||||.+|+|..++. .+..+++.+++.++.||+.||.|||++||+|||||     
T Consensus        69 l~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~~~-~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiK-----  142 (309)
T d1u5ra_          69 LQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEV-HKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVK-----  142 (309)
T ss_dssp             HTTCCCTTBCCEEEEEEETTEEEEEEECCSEEHHHHHHH-HTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCS-----
T ss_pred             HHHCCCCCEeeEEEEEEECCEEEEEEEecCCCchHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCC-----
Confidence            578999999999999999999999999999999876654 56789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc---CC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE---IG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---~~  157 (251)
                                                  |+||+++.++.+||+|||++......    ....||+.|+|||++.+   ..
T Consensus       143 ----------------------------p~NILl~~~~~~Kl~DFG~a~~~~~~----~~~~GT~~Y~APE~~~~~~~~~  190 (309)
T d1u5ra_         143 ----------------------------AGNILLSEPGLVKLGDFGSASIMAPA----NSFVGTPYWMAPEVILAMDEGQ  190 (309)
T ss_dssp             ----------------------------GGGEEEETTTEEEECCCTTCBSSSSB----CCCCSCGGGCCHHHHTTTTSCC
T ss_pred             ----------------------------cceEEECCCCCEEEeecccccccCCC----CccccCccccCHHHHhccCCCC
Confidence                                        88999999999999999999765432    34568999999999854   45


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      ++.++||||+||++|+|++|..||.+.........+.....+.. .+..+++++.+||.+||+.||++|||++|+|+|||
T Consensus       191 y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~-~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~Hp~  269 (309)
T d1u5ra_         191 YDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPAL-QSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRF  269 (309)
T ss_dssp             BCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC-SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHH
T ss_pred             cCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCC-CCCCCCHHHHHHHHHHCcCChhHCcCHHHHHhCHH
Confidence            88999999999999999999999987776665554444433232 24568999999999999999999999999999999


Q ss_pred             hhhcc
Q psy3253         238 IQRHD  242 (251)
Q Consensus       238 ~~~~~  242 (251)
                      |++..
T Consensus       270 ~~~~~  274 (309)
T d1u5ra_         270 VLRER  274 (309)
T ss_dssp             HHSCC
T ss_pred             hcCCC
Confidence            98643

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-50  Score=347.13  Aligned_cols=208  Identities=25%  Similarity=0.449  Sum_probs=177.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |+.++|||||+++++|.+++.+|+|||||+||+|.+++. +...+++..++.++.||+.||.|||++|++|||||     
T Consensus        61 l~~~~hpnIv~l~~~~~~~~~~~ivmE~~~gg~L~~~l~-~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlK-----  134 (364)
T d1omwa3          61 VSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS-QHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLK-----  134 (364)
T ss_dssp             HSSSCCTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HhcCCCCcEEEEEEEEEECCEEEEEEEecCCCcHHHHHH-hcccccHHHHHHHHHHHHHHHHHHHHCCccceeec-----
Confidence            356799999999999999999999999999999999997 45789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.+||+|||+|+.....  ......||+.|+|||++.+ ..++
T Consensus       135 ----------------------------P~NILl~~~g~iKl~DFGla~~~~~~--~~~~~~GT~~y~APE~~~~~~~~~  184 (364)
T d1omwa3         135 ----------------------------PANILLDEHGHVRISDLGLACDFSKK--KPHASVGTHGYMAPEVLQKGVAYD  184 (364)
T ss_dssp             ----------------------------GGGEEECSSSCEEECCCTTCEECSSS--CCCSCCSCGGGCCHHHHSTTCCCC
T ss_pred             ----------------------------cceeEEcCCCcEEEeeeceeeecCCC--cccccccccccchhHHhhcCCCCC
Confidence                                        99999999999999999999866543  3344578999999999964 5689


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC-----HHHHhc
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT-----ASEMLN  234 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps-----~~evl~  234 (251)
                      .++||||+||++|+|++|+.||.+....................+..+++++.+||.+||+.||++|||     ++|+++
T Consensus       185 ~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         185 SSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred             cccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence            999999999999999999999976544332221111122233346678999999999999999999999     799999


Q ss_pred             ChhhhhccCC
Q psy3253         235 HEFIQRHDTD  244 (251)
Q Consensus       235 hp~~~~~~~~  244 (251)
                      ||||+..+|.
T Consensus       265 Hp~f~~i~~~  274 (364)
T d1omwa3         265 SPFFRSLDWQ  274 (364)
T ss_dssp             SGGGTTCCHH
T ss_pred             CccccCCCHH
Confidence            9999988764

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-51  Score=341.42  Aligned_cols=211  Identities=27%  Similarity=0.438  Sum_probs=175.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.++..+|+|||||+||+|.+++.. .+.+++..++.++.|++.||+|||++||+|||||     
T Consensus        67 l~~l~HpnIv~~~~~~~~~~~~~iv~E~~~gg~L~~~i~~-~~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiK-----  140 (293)
T d1jksa_          67 LKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE-KESLTEEEATEFLKQILNGVYYLHSLQIAHFDLK-----  140 (293)
T ss_dssp             HHHCCCTTBCCEEEEEECSSEEEEEEECCCSCBHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEEcCCCccccchhcc-ccccchhHHHHHHHHHHHHHHhhhhcceeecccc-----
Confidence            3578999999999999999999999999999999999974 4689999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCC----CeEecccccccccCcccccccccccccccccccccccC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG----HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI  156 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~----~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  156 (251)
                                                  |+||+++.++    .+|++|||++...... .......+|+.|+|||++.+.
T Consensus       141 ----------------------------p~Nill~~~~~~~~~vkl~DfG~a~~~~~~-~~~~~~~~t~~y~APE~~~~~  191 (293)
T d1jksa_         141 ----------------------------PENIMLLDRNVPKPRIKIIDFGLAHKIDFG-NEFKNIFGTPEFVAPEIVNYE  191 (293)
T ss_dssp             ----------------------------GGGEEESCSSSSSCCEEECCCTTCEECTTS-CBCSCCCCCGGGCCHHHHTTC
T ss_pred             ----------------------------cceEEEecCCCcccceEecchhhhhhcCCC-ccccccCCCCcccCHHHHcCC
Confidence                                        7777776555    4999999999766433 233445689999999999998


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC-CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         157 GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP-PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       157 ~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++.++||||+||++|+|++|+.||.+.+.......+..... .....+..+|+++.+||.+||+.||++|||++|+++|
T Consensus       192 ~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~h  271 (293)
T d1jksa_         192 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQH  271 (293)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred             CCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcCCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence            999999999999999999999999988776666555444322 1112235689999999999999999999999999999


Q ss_pred             hhhhhccCCCC
Q psy3253         236 EFIQRHDTDPS  246 (251)
Q Consensus       236 p~~~~~~~~~~  246 (251)
                      |||+..+|...
T Consensus       272 p~~~~~~~~~~  282 (293)
T d1jksa_         272 PWIKPKDTQQA  282 (293)
T ss_dssp             TTTCC------
T ss_pred             cccCCCChhHh
Confidence            99998877653

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=4e-51  Score=348.60  Aligned_cols=210  Identities=22%  Similarity=0.376  Sum_probs=179.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.+++.+|+|||||+||+|.+++....+.+++..++.++.||+.||+|||++|++|||||     
T Consensus        77 l~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiK-----  151 (350)
T d1koaa2          77 MSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLK-----  151 (350)
T ss_dssp             HHHTCCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----
T ss_pred             HHhCCCCCCCcEEEEEEECCEEEEEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeec-----
Confidence            357899999999999999999999999999999999996556789999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecC--CCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN--TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~--~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++  .++.+||+|||+++..... .......||+.|+|||++.+.++
T Consensus       152 ----------------------------p~NIll~~~~~~~vkL~DFG~a~~~~~~-~~~~~~~gT~~Y~aPEv~~~~~~  202 (350)
T d1koaa2         152 ----------------------------PENIMFTTKRSNELKLIDFGLTAHLDPK-QSVKVTTGTAEFAAPEVAEGKPV  202 (350)
T ss_dssp             ----------------------------GGGEEESSTTSCCEEECCCTTCEECCTT-SCEEEECSCTTTCCHHHHHTCCB
T ss_pred             ----------------------------hhHeeeccCCCCeEEEeecchheecccc-cccceecCcccccCHHHHcCCCC
Confidence                                        7788774  3578999999999876543 23344678999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++||||+||++|+|++|..||.+.+.......+.... .........+++++.+||.+||..||++|||++|+++|||
T Consensus       203 ~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~hp~  282 (350)
T d1koaa2         203 GYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPW  282 (350)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHHSTT
T ss_pred             ChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhcCcc
Confidence            999999999999999999999998877666555443322 1122233568999999999999999999999999999999


Q ss_pred             hhhccCC
Q psy3253         238 IQRHDTD  244 (251)
Q Consensus       238 ~~~~~~~  244 (251)
                      |+...+.
T Consensus       283 ~~~~~~~  289 (350)
T d1koaa2         283 LTPGNAP  289 (350)
T ss_dssp             TSCTTCC
T ss_pred             cCCCCCC
Confidence            9987654

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-50  Score=340.78  Aligned_cols=204  Identities=27%  Similarity=0.544  Sum_probs=181.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++.++..+|+|||||.||+|..++. ....+++..++.++.||+.||.|||++||+|||||     
T Consensus        58 l~~l~HpnIv~~~~~~~~~~~~~ivmE~~~gg~l~~~~~-~~~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiK-----  131 (316)
T d1fota_          58 LSIVTHPFIIRMWGTFQDAQQIFMIMDYIEGGELFSLLR-KSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLK-----  131 (316)
T ss_dssp             HHSCCBTTBCCEEEEEECSSEEEEEECCCCSCBHHHHHH-HTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC-----
T ss_pred             HHhccCcChhheeeeEeeCCeeeeEeeecCCcccccccc-ccccccccHHHHHHHHHHHhhhhhccCcEEccccC-----
Confidence            457899999999999999999999999999999999887 56789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.+||+|||+++.....   .....||+.|+|||++.+.+++.
T Consensus       132 ----------------------------p~NILl~~~g~vkL~DFG~a~~~~~~---~~~~~Gt~~Y~APE~l~~~~y~~  180 (316)
T d1fota_         132 ----------------------------PENILLDKNGHIKITDFGFAKYVPDV---TYTLCGTPDYIAPEVVSTKPYNK  180 (316)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCSSCEECSSC---BCCCCSCTTTCCHHHHTTCCBCT
T ss_pred             ----------------------------chheeEcCCCCEEEecCccceEeccc---cccccCcccccCHHHHcCCCCCc
Confidence                                        99999999999999999999775533   23467899999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~h  235 (251)
                      ++||||+||++|+|++|+.||.+.+.......+....   ...+..+++++.+++.+||..||++|+     |++|+++|
T Consensus       181 ~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~---~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~H  257 (316)
T d1fota_         181 SIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAE---LRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNH  257 (316)
T ss_dssp             THHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCC---CCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTS
T ss_pred             hhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHcCC---CCCCCCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHcC
Confidence            9999999999999999999998877766665554432   233567899999999999999999996     99999999


Q ss_pred             hhhhhccCC
Q psy3253         236 EFIQRHDTD  244 (251)
Q Consensus       236 p~~~~~~~~  244 (251)
                      |||++.+|+
T Consensus       258 p~f~~i~~~  266 (316)
T d1fota_         258 PWFKEVVWE  266 (316)
T ss_dssp             GGGSSCCHH
T ss_pred             cccccCCHH
Confidence            999988765

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-50  Score=340.37  Aligned_cols=205  Identities=26%  Similarity=0.487  Sum_probs=182.5

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcc
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV   82 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~   82 (251)
                      .++|||||++++++.+++.+|+|||||++|+|.++++ ....+++.+++.++.||+.||+|||++|++|||||       
T Consensus        59 ~~~hp~Iv~~~~~~~~~~~~yivmEy~~~g~L~~~i~-~~~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDik-------  130 (320)
T d1xjda_          59 AWEHPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQ-SCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLK-------  130 (320)
T ss_dssp             HTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCC-------
T ss_pred             hCCCCcEEEEEEEEccCCceeEEEeecCCCcHHHHhh-ccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCc-------
Confidence            5799999999999999999999999999999999997 45689999999999999999999999999999988       


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCcch
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDCVA  162 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  162 (251)
                                                |+||+++.++.+||+|||+++.............||+.|+|||++.+.+++.++
T Consensus       131 --------------------------p~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  184 (320)
T d1xjda_         131 --------------------------LDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSV  184 (320)
T ss_dssp             --------------------------GGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHH
T ss_pred             --------------------------ccceeecCCCceeccccchhhhcccccccccccCCCCCcCCHHHHcCCCCCchh
Confidence                                      999999999999999999998765544455556789999999999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHH-HHhcChhhhhc
Q psy3253         163 DMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATAS-EMLNHEFIQRH  241 (251)
Q Consensus       163 DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~-evl~hp~~~~~  241 (251)
                      ||||+||++|+|++|+.||.+.+.......+....+   ..+..+++++.+||.+||+.||++|||++ |+++||||++.
T Consensus       185 DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~---~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~hpff~~~  261 (320)
T d1xjda_         185 DWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNP---FYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREI  261 (320)
T ss_dssp             HHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC---CCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTC
T ss_pred             hhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHcCCC---CCCccCCHHHHHHHHHhcccCCCCCcCHHHHHHhCchhccC
Confidence            999999999999999999988777666655544322   33567899999999999999999999995 89999999987


Q ss_pred             cCC
Q psy3253         242 DTD  244 (251)
Q Consensus       242 ~~~  244 (251)
                      +|+
T Consensus       262 ~~~  264 (320)
T d1xjda_         262 NWE  264 (320)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            654

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.2e-49  Score=339.55  Aligned_cols=204  Identities=30%  Similarity=0.499  Sum_probs=181.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.+....++||||+.+|+|.+++. ..+.+++..++.++.||+.||.|||++||+|||||     
T Consensus        95 l~~l~hpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~l~-~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIK-----  168 (350)
T d1rdqe_          95 LQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLR-RIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLK-----  168 (350)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HHHcCCCcEeecccccccccccccccccccccchhhhHh-hcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCC-----
Confidence            478999999999999999999999999999999999997 44689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCCCc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYDC  160 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  160 (251)
                                                  |+||+++.++.+||+|||+++.....   .....||+.|+|||++.+..++.
T Consensus       169 ----------------------------P~NILl~~~g~ikL~DFG~a~~~~~~---~~~~~Gt~~Y~APE~~~~~~~~~  217 (350)
T d1rdqe_         169 ----------------------------PENLLIDQQGYIQVTDFGFAKRVKGR---TWTLCGTPEALAPEIILSKGYNK  217 (350)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCCTTCEECSSC---BCCCEECGGGCCHHHHTTCCBCT
T ss_pred             ----------------------------HHHcccCCCCCEEeeeceeeeecccc---cccccCccccCCHHHHcCCCCCc
Confidence                                        99999999999999999999876532   33467899999999999999999


Q ss_pred             chhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHHHhcC
Q psy3253         161 VADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASEMLNH  235 (251)
Q Consensus       161 ~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~evl~h  235 (251)
                      ++||||+||++|+|++|..||.+.+.......+....   ...+..+++++.++|.+||..||++|+     |++|+++|
T Consensus       218 ~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~---~~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~H  294 (350)
T d1rdqe_         218 AVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGK---VRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNH  294 (350)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC---CCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTS
T ss_pred             cccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCC---CCCCccCCHHHHHHHHHHhhhCHHhccccccccHHHHHcC
Confidence            9999999999999999999998877666655554442   233567899999999999999999994     99999999


Q ss_pred             hhhhhccCC
Q psy3253         236 EFIQRHDTD  244 (251)
Q Consensus       236 p~~~~~~~~  244 (251)
                      |||+..+|+
T Consensus       295 p~f~~~~~~  303 (350)
T d1rdqe_         295 KWFATTDWI  303 (350)
T ss_dssp             GGGTTCCHH
T ss_pred             ccccCCCHH
Confidence            999988774

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=8.1e-50  Score=330.39  Aligned_cols=205  Identities=35%  Similarity=0.511  Sum_probs=175.8

Q ss_pred             CCCC-CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCD-SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~-hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      ++++ ||||++++++|.+++++|+|||||++|+|.++++ .++.+++.+++.++.||+.||+|||++||+|||||     
T Consensus        64 ~~l~~hpnIv~~~~~~~~~~~~~ivmE~~~~g~L~~~l~-~~~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlk-----  137 (277)
T d1phka_          64 RKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT-EKVTLSEKETRKIMRALLEVICALHKLNIVHRDLK-----  137 (277)
T ss_dssp             HHHTTCTTBCCEEEEEECSSEEEEEEECCTTCBHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----
T ss_pred             HHhcCCCCeEEEEeecccCcceEEEEEcCCCchHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHcCCcccccc-----
Confidence            3454 9999999999999999999999999999999997 45689999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-----
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-----  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----  155 (251)
                                                  |+||+++.++.+||+|||+++...... ......||+.|+|||.+.+     
T Consensus       138 ----------------------------p~Nill~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~~PE~~~~~~~~~  188 (277)
T d1phka_         138 ----------------------------PENILLDDDMNIKLTDFGFSCQLDPGE-KLREVCGTPSYLAPEIIECSMNDN  188 (277)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCCTTCEECCTTC-CBCCCCSCGGGCCHHHHHHHHCTT
T ss_pred             ----------------------------cceEEEcCCCCeEEccchheeEccCCC-ceeeeeccCCCCCHHHhhcccccc
Confidence                                        899999999999999999998765432 3344568999999999853     


Q ss_pred             -CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCC-CCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHh
Q psy3253         156 -IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKP-PPSFREPDVWTPEFIDFVSRCLVKNPEERATASEML  233 (251)
Q Consensus       156 -~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl  233 (251)
                       ..++.++||||+||++|+|++|+.||.+.+.......+.... .........+|+++.+|+.+||+.||++|||++|++
T Consensus       189 ~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil  268 (277)
T d1phka_         189 HPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEAL  268 (277)
T ss_dssp             SCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHT
T ss_pred             CCCCCchheEcccchhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHH
Confidence             346889999999999999999999998887666554443332 222223457899999999999999999999999999


Q ss_pred             cChhhhhc
Q psy3253         234 NHEFIQRH  241 (251)
Q Consensus       234 ~hp~~~~~  241 (251)
                      +||||+++
T Consensus       269 ~h~~~~~~  276 (277)
T d1phka_         269 AHPFFQQY  276 (277)
T ss_dssp             TSGGGCTT
T ss_pred             cCHHHHHh
Confidence            99999874

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-49  Score=331.54  Aligned_cols=210  Identities=24%  Similarity=0.382  Sum_probs=172.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.++++.|+||||+.++++..+. ..+..+++..++.++.||+.||+|||++|++|||||     
T Consensus        54 l~~l~hpnIv~~~~~~~~~~~~~ivmE~~~~~~~~~~~-~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiK-----  127 (299)
T d1ua2a_          54 LQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIK-DNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLK-----  127 (299)
T ss_dssp             HHHCCCTTBCCEEEEECCTTCCEEEEECCSEEHHHHHT-TCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCC-----
T ss_pred             HHhCCCCCEeEEEeeeccCCceeehhhhhcchHHhhhh-hcccCCCHHHHHHHHHHHHHHHHHhhccceecccCC-----
Confidence            35689999999999999999999999999887665554 356789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.+||+|||+++.............+|+.|+|||++.. ..++
T Consensus       128 ----------------------------p~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  179 (299)
T d1ua2a_         128 ----------------------------PNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYG  179 (299)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCC
T ss_pred             ----------------------------cceEEecCCCccccccCccccccCCCcccccceecChhhccHHHHccCCCCC
Confidence                                        88999999999999999999876655444455678999999999865 4579


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CCC-------------CCCC---------CCCCCCHHHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KPP-------------PSFR---------EPDVWTPEFIDF  214 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~~-------------~~~~---------~~~~~~~~~~~l  214 (251)
                      .++||||+||++|+|++|.+||.+.+.......+..   ...             ....         .....++++.+|
T Consensus       180 ~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dl  259 (299)
T d1ua2a_         180 VGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDL  259 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHH
T ss_pred             hhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHH
Confidence            999999999999999999999977655443322110   000             0000         013467899999


Q ss_pred             HHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         215 VSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       215 i~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      |.+||+.||++|||++|+|+||||++...+
T Consensus       260 l~~~L~~dP~~R~sa~e~L~Hp~f~~~p~p  289 (299)
T d1ua2a_         260 IQGLFLFNPCARITATQALKMKYFSNRPGP  289 (299)
T ss_dssp             HHHHHCSSTTTSCCHHHHHTSGGGTSSSCC
T ss_pred             HHHHccCChhhCcCHHHHhCCHhhCCCCCC
Confidence            999999999999999999999999976543

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-49  Score=335.02  Aligned_cols=207  Identities=26%  Similarity=0.339  Sum_probs=176.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.++..+|+|||||+||+|.+++...+..+++.+++.++.||+.||+|||++||+|||||     
T Consensus        55 l~~l~HpnIv~~~~~~~~~~~~~lvmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlK-----  129 (321)
T d1tkia_          55 LNIARHRNILHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIR-----  129 (321)
T ss_dssp             HHHSCCTTBCCEEEEEEETTEEEEEECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC-----
T ss_pred             HHhCCCCCCCeEEEEEEECCEEEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccc-----
Confidence            357899999999999999999999999999999999997555689999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCC--CCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT--EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~--~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.  ...++|+|||++...... .......+++.|+|||.+.+..+
T Consensus       130 ----------------------------p~NIll~~~~~~~ikl~DFG~~~~~~~~-~~~~~~~~t~~y~ape~~~~~~~  180 (321)
T d1tkia_         130 ----------------------------PENIIYQTRRSSTIKIIEFGQARQLKPG-DNFRLLFTAPEYYAPEVHQHDVV  180 (321)
T ss_dssp             ----------------------------GGGEEESSSSCCCEEECCCTTCEECCTT-CEEEEEESCGGGSCHHHHTTCEE
T ss_pred             ----------------------------ccceeecCCCceEEEEcccchhhccccC-CcccccccccccccchhccCCCC
Confidence                                        77887764  347999999999765433 23344568899999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCC-CCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPP-PSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++||||+||++|+|++|..||.+.+.......+..... .....+..+++++.+||.+||+.||++|||++|+++|||
T Consensus       181 ~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~  260 (321)
T d1tkia_         181 STATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPW  260 (321)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHH
T ss_pred             CchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHh
Confidence            9999999999999999999999988777666555443321 111123468999999999999999999999999999999


Q ss_pred             hhhc
Q psy3253         238 IQRH  241 (251)
Q Consensus       238 ~~~~  241 (251)
                      |++.
T Consensus       261 ~~~~  264 (321)
T d1tkia_         261 LKQK  264 (321)
T ss_dssp             HHSC
T ss_pred             hccC
Confidence            9753

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-48  Score=331.01  Aligned_cols=207  Identities=29%  Similarity=0.424  Sum_probs=167.0

Q ss_pred             CCCCccceeeeeEee----CCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           4 CDSPYVVKYYGSYFK----NTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         4 l~hpniv~l~~~~~~----~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      .+|||||+++++|.+    +..+|+|||||+||+|.+++..++ ..+++.+++.++.||+.||+|||++||+|||||   
T Consensus        62 ~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiK---  138 (335)
T d2ozaa1          62 SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVK---  138 (335)
T ss_dssp             TTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCS---
T ss_pred             cCCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCcccccc---
Confidence            589999999999975    467999999999999999997443 479999999999999999999999999999999   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCC---CCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT---EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~---~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                    |+||+++.   .+.+||+|||+++..... .......||+.|+|||++.+
T Consensus       139 ------------------------------p~NIll~~~~~~~~~Kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~  187 (335)
T d2ozaa1         139 ------------------------------PENLLYTSKRPNAILKLTDFGFAKETTSH-NSLTTPCYTPYYVAPEVLGP  187 (335)
T ss_dssp             ------------------------------GGGEEESCSSTTCCEEECCCTTCEECCCC-CCCCCCSCCCSSCCCCCCCG
T ss_pred             ------------------------------ccccccccccccccccccccceeeeccCC-CccccccCCcccCCcHHHcC
Confidence                                          77887764   457999999999766543 23345678999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC---CCCCCCC--CCCCCCHHHHHHHHHhhhcCcCccCCHH
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT---KPPPSFR--EPDVWTPEFIDFVSRCLVKNPEERATAS  230 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~li~~~l~~~p~~Rps~~  230 (251)
                      ..++.++||||+||++|+|++|.+||.+.+.......+..   .....++  .+..+++++.+||.+||+.||++|||++
T Consensus       188 ~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~  267 (335)
T d2ozaa1         188 EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTIT  267 (335)
T ss_dssp             GGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CCCSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             CCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHH
Confidence            9999999999999999999999999965544332222111   1111111  1235789999999999999999999999


Q ss_pred             HHhcChhhhhccCC
Q psy3253         231 EMLNHEFIQRHDTD  244 (251)
Q Consensus       231 evl~hp~~~~~~~~  244 (251)
                      |+++||||++....
T Consensus       268 eil~hp~~~~~~~~  281 (335)
T d2ozaa1         268 EFMNHPWIMQSTKV  281 (335)
T ss_dssp             HHHHSHHHHTTTSS
T ss_pred             HHHcCHHhhCCCCC
Confidence            99999999865443

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-49  Score=326.02  Aligned_cols=211  Identities=26%  Similarity=0.446  Sum_probs=178.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++.+ +..|+|||||++|+|.+++...+..+++..++.++.||+.||.|||++|++|||||     
T Consensus        63 l~~l~HpnIv~l~g~~~~-~~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlK-----  136 (285)
T d1u59a_          63 MHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLA-----  136 (285)
T ss_dssp             HHHCCCTTBCCEEEEEES-SSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HHhCCCCCEeeEeeeecc-CeEEEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCc-----
Confidence            357899999999999965 46899999999999999987566789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---cccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.+||+|||+++.......   ......+|+.|+|||++.+..
T Consensus       137 ----------------------------p~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  188 (285)
T d1u59a_         137 ----------------------------ARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRK  188 (285)
T ss_dssp             ----------------------------GGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCE
T ss_pred             ----------------------------hhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhCCC
Confidence                                        8899999999999999999986643221   223345788999999999889


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH---h
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM---L  233 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev---l  233 (251)
                      ++.++|||||||++|+|+| |..||.+.........+..+..+  ..+..+++++.+||.+||+.||++|||++++   |
T Consensus       189 ~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~~~~--~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L  266 (285)
T d1u59a_         189 FSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRM--ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM  266 (285)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCC--CCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHH
T ss_pred             CCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC--CCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHH
Confidence            9999999999999999998 99999887766666555554333  3467789999999999999999999999988   7


Q ss_pred             cChhhhhccCCCCC
Q psy3253         234 NHEFIQRHDTDPSQ  247 (251)
Q Consensus       234 ~hp~~~~~~~~~~~  247 (251)
                      +|+|+.-.....++
T Consensus       267 ~~~~~~~~~~~~~~  280 (285)
T d1u59a_         267 RACYYSLASKVEGH  280 (285)
T ss_dssp             HHHHHHHHTTCSSC
T ss_pred             HHHHHHhhhccchh
Confidence            78888755544443

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-48  Score=323.82  Aligned_cols=203  Identities=25%  Similarity=0.440  Sum_probs=171.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++.+ +..++|||||++|+|.++++ ....+++..++.++.||+.||.|||++||+|||||     
T Consensus        62 l~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~g~L~~~l~-~~~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlK-----  134 (277)
T d1xbba_          62 MQQLDNPYIVRMIGICEA-ESWMLVMEMAELGPLNKYLQ-QNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLA-----  134 (277)
T ss_dssp             HHTCCCTTBCCEEEEEES-SSEEEEEECCTTEEHHHHHH-HCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS-----
T ss_pred             HHhCCCCCCceEEEEecc-CCEEEEEEcCCCCcHHHHHh-hccCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCc-----
Confidence            457899999999999965 45799999999999999997 56789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---cccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.+||+|||+++.......   ......||+.|+|||++.+..
T Consensus       135 ----------------------------p~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~  186 (277)
T d1xbba_         135 ----------------------------ARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYK  186 (277)
T ss_dssp             ----------------------------GGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCE
T ss_pred             ----------------------------chhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCC
Confidence                                        8899999999999999999976543221   123345788999999999999


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH---h
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM---L  233 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev---l  233 (251)
                      ++.++|||||||++|+|++ |++||.+.+.......+..+..+  ..+..+|+++.+||.+||+.||++|||++|+   |
T Consensus       187 ~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~~~--~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L  264 (277)
T d1xbba_         187 FSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERM--GCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRL  264 (277)
T ss_dssp             EEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHH
T ss_pred             CCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCCCC--CCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHh
Confidence            9999999999999999998 89999887776666555544333  3467789999999999999999999999998   5


Q ss_pred             cChhhhh
Q psy3253         234 NHEFIQR  240 (251)
Q Consensus       234 ~hp~~~~  240 (251)
                      +|+|++-
T Consensus       265 ~~~~~~~  271 (277)
T d1xbba_         265 RNYYYDV  271 (277)
T ss_dssp             HHHHHHH
T ss_pred             hCHHhhc
Confidence            6777653

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-48  Score=325.69  Aligned_cols=200  Identities=27%  Similarity=0.423  Sum_probs=165.4

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++.+++.+++|||||++|+|.+++....+.+++.+++.++.||+.||.|||++|++|||||     
T Consensus        81 l~~l~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlK-----  155 (299)
T d1jpaa_          81 MGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLA-----  155 (299)
T ss_dssp             HTTCCCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HHhCCCCCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccc-----
Confidence            578999999999999999999999999999999999998666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc-----cccccccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK-----RNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~-----~~~~~~~~~y~aPE~~~~  155 (251)
                                                  |+||+++.++++||+|||+++........     .....+|+.|+|||.+.+
T Consensus       156 ----------------------------p~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~  207 (299)
T d1jpaa_         156 ----------------------------ARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQY  207 (299)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCC-----------------------CGGGSCHHHHHS
T ss_pred             ----------------------------cceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhc
Confidence                                        99999999999999999999765432211     122346889999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         156 IGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ..++.++|||||||++|+|+| |.+||.+.........+.....  ...+..+++++.+|+.+||+.||++|||++|+++
T Consensus       208 ~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~~~~~--~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~  285 (299)
T d1jpaa_         208 RKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYR--LPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVN  285 (299)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCC--CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC--CCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence            999999999999999999998 8999988877666655544432  2346678999999999999999999999999987


Q ss_pred             C
Q psy3253         235 H  235 (251)
Q Consensus       235 h  235 (251)
                      +
T Consensus       286 ~  286 (299)
T d1jpaa_         286 T  286 (299)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-48  Score=322.64  Aligned_cols=210  Identities=27%  Similarity=0.436  Sum_probs=171.3

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHH-HHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIM-RLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~-~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++|||||+++++|.++.++|+||||+.+ ++.+++ ......+++..++.++.||+.||+|||++||+|||||    
T Consensus        55 l~~l~Hp~Iv~~~~~~~~~~~~~iv~e~~~~-~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiK----  129 (298)
T d1gz8a_          55 LKELNHPNIVKLLDVIHTENKLYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLK----  129 (298)
T ss_dssp             HTTCCCTTBCCEEEEEEETTEEEEEEECCSE-EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC----
T ss_pred             HHhCCCCcEEEeccccccccceeEEEeecCC-chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccC----
Confidence            5789999999999999999999999999976 444444 4445679999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC-C
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-Y  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~  158 (251)
                                                   |+||+++.++.+||+|||.++.............||+.|+|||.+.... +
T Consensus       130 -----------------------------peNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~  180 (298)
T d1gz8a_         130 -----------------------------PQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY  180 (298)
T ss_dssp             -----------------------------GGGEEECTTSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSC
T ss_pred             -----------------------------chheeecccCcceeccCCcceeccCCcccceeecccceeeehhhhccccCC
Confidence                                         8899999999999999999987665545555567899999999987655 5


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC-----------------CCCCCC---C------CCCCCCHHHH
Q psy3253         159 DCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT-----------------KPPPSF---R------EPDVWTPEFI  212 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~-----------------~~~~~~---~------~~~~~~~~~~  212 (251)
                      +.++|+||+||++|+|++|+.||.+.+.......+..                 ......   .      ....+++++.
T Consensus       181 ~~~~DiwSlGvily~m~~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  260 (298)
T d1gz8a_         181 STAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGR  260 (298)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHH
T ss_pred             CccccccccchhhhHHhhCCCCCCCCCHHHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccCCCHHHH
Confidence            7899999999999999999999976654333222100                 000000   0      0135678999


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      +|+.+||+.||++|||++|+++||||++...+
T Consensus       261 dll~~mL~~dP~~R~t~~ell~H~ff~~~~~p  292 (298)
T d1gz8a_         261 SLLSQMLHYDPNKRISAKAALAHPFFQDVTKP  292 (298)
T ss_dssp             HHHHHHTCSSTTTSCCHHHHHTSGGGTTCCCC
T ss_pred             HHHHHHccCChhHCcCHHHHhCCHhhccCCCC
Confidence            99999999999999999999999999987654

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-47  Score=322.03  Aligned_cols=208  Identities=27%  Similarity=0.425  Sum_probs=171.1

Q ss_pred             CCCCCccceeeeeEee-----CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCC
Q psy3253           3 QCDSPYVVKYYGSYFK-----NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAG   77 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~-----~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~   77 (251)
                      .++||||++++++|..     ....+++|||++++++..........+++..++.++.|++.||+|||++||+|||||  
T Consensus        66 ~~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiK--  143 (305)
T d1blxa_          66 TFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLK--  143 (305)
T ss_dssp             HTCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC--
T ss_pred             hcCCCCcceeeeeecccccccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCC--
Confidence            3589999999999863     346899999998877766655556789999999999999999999999999999988  


Q ss_pred             CCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC
Q psy3253          78 SGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        78 Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                     |+||+++.++.+||+|||+++..... .......||+.|+|||++.+.+
T Consensus       144 -------------------------------p~NILi~~~~~~kl~dfg~~~~~~~~-~~~~~~~gT~~Y~APE~~~~~~  191 (305)
T d1blxa_         144 -------------------------------PQNILVTSSGQIKLADFGLARIYSFQ-MALTSVVVTLWYRAPEVLLQSS  191 (305)
T ss_dssp             -------------------------------GGGEEECTTCCEEECSCCSCCCCCGG-GGGCCCCCCCTTCCHHHHTTCC
T ss_pred             -------------------------------ccEEEEcCCCCeeecchhhhhhhccc-ccCCCcccChhhcCcchhcCCC
Confidence                                           88999999999999999998765433 3345567899999999999999


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC------------------------CCCCCCCCCCCCCCHHHHH
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP------------------------TKPPPSFREPDVWTPEFID  213 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~  213 (251)
                      ++.++||||+||++|+|++|++||.+.+.......+.                        ....+.......+++.+.+
T Consensus       192 y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~d  271 (305)
T d1blxa_         192 YATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKD  271 (305)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHH
T ss_pred             CChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHH
Confidence            9999999999999999999999997765443322210                        0000111123557899999


Q ss_pred             HHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         214 FVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       214 li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      ||.+||++||++|||++|+|+||||++.++.
T Consensus       272 li~~mL~~dP~~R~sa~e~L~Hpff~~i~~~  302 (305)
T d1blxa_         272 LLLKCLTFNPAKRISAYSALSHPYFQDLERC  302 (305)
T ss_dssp             HHHHHSCSSTTTSCCHHHHHTSGGGTTCCCC
T ss_pred             HHHHHCcCChhHCcCHHHHhcChhhcCchhh
Confidence            9999999999999999999999999987654

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-48  Score=328.36  Aligned_cols=199  Identities=24%  Similarity=0.432  Sum_probs=168.4

Q ss_pred             CC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC----------------------CCCCHHHHHHHHHHHHH
Q psy3253           3 QC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK----------------------KTLSEDEIATILCDTLK   59 (251)
Q Consensus         3 ~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~----------------------~~l~~~~~~~~~~~i~~   59 (251)
                      ++ +|||||++++++.+.+.+|+|||||++|+|.++++.+.                      ..+++..++.++.||+.
T Consensus        96 ~l~~HpnIv~l~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~  175 (325)
T d1rjba_          96 QLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAK  175 (325)
T ss_dssp             HHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHH
T ss_pred             HhcCCCcEeEEEEEEeeCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHH
Confidence            45 89999999999999999999999999999999997443                      24889999999999999


Q ss_pred             HHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--c
Q psy3253          60 GLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--K  137 (251)
Q Consensus        60 ~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~  137 (251)
                      ||+|||++||+|||||                                 |+||+++.++.+||+|||+|+.......  .
T Consensus       176 gl~yLH~~~IiHRDlK---------------------------------p~Nill~~~~~~Kl~DFGla~~~~~~~~~~~  222 (325)
T d1rjba_         176 GMEFLEFKSCVHRDLA---------------------------------ARNVLVTHGKVVKICDFGLARDIMSDSNYVV  222 (325)
T ss_dssp             HHHHHHHTTEEETTCS---------------------------------GGGEEEETTTEEEECCCGGGSCGGGCTTSEE
T ss_pred             HHHHHHhCCeeeccCc---------------------------------hhccccccCCeEEEeeccccccccCCCceee
Confidence            9999999999999988                                 8899999999999999999976543322  2


Q ss_pred             ccccccccccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHH
Q psy3253         138 RNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVS  216 (251)
Q Consensus       138 ~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  216 (251)
                      .....+|+.|+|||++.+..++.++|||||||++|+|++ |.+||.+.+.......+.... .....+..+++++.+||.
T Consensus       223 ~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~~~~~~~~~-~~~~~p~~~~~~l~~li~  301 (325)
T d1rjba_         223 RGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNG-FKMDQPFYATEEIYIIMQ  301 (325)
T ss_dssp             ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTT-CCCCCCTTCCHHHHHHHH
T ss_pred             eccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHHHHHHHHhcC-CCCCCCCcCCHHHHHHHH
Confidence            234567999999999999999999999999999999997 899998766554443332221 233446778999999999


Q ss_pred             HhhhcCcCccCCHHHHhcC
Q psy3253         217 RCLVKNPEERATASEMLNH  235 (251)
Q Consensus       217 ~~l~~~p~~Rps~~evl~h  235 (251)
                      +||+.||++|||++||++|
T Consensus       302 ~cl~~dP~~RPt~~ei~~~  320 (325)
T d1rjba_         302 SCWAFDSRKRPSFPNLTSF  320 (325)
T ss_dssp             HHTCSSGGGSCCHHHHHHH
T ss_pred             HHcCCChhHCcCHHHHHHH
Confidence            9999999999999999976

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-48  Score=319.61  Aligned_cols=201  Identities=25%  Similarity=0.463  Sum_probs=163.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++. .+.+++|||||++|+|.+++...+..+++..++.++.||+.||+|||++||+|||||     
T Consensus        58 l~~l~HpnIv~~~~~~~-~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlK-----  131 (276)
T d1uwha_          58 LRKTRHVNILLFMGYST-APQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLK-----  131 (276)
T ss_dssp             HTTCCCTTBCCEEEEEC-SSSCEEEEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HHhCCCCCEeeeeEEEe-ccEEEEEEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccC-----
Confidence            46899999999999875 456899999999999999998666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--cccccccccccccccccccc---
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTPFWMAPEVIQE---  155 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~---  155 (251)
                                                  |+||+++.++.+||+|||+|+......  .......||+.|+|||++.+   
T Consensus       132 ----------------------------p~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  183 (276)
T d1uwha_         132 ----------------------------SNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDK  183 (276)
T ss_dssp             ----------------------------GGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSS
T ss_pred             ----------------------------HHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccC
Confidence                                        899999999999999999997654321  12334568999999999964   


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc-CCC--CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI-PTK--PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      .+++.++|||||||++|+|+||+.||.+.+........ ...  .+.....+..+++++.+||.+||+.||++|||++|+
T Consensus       184 ~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i  263 (276)
T d1uwha_         184 NPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQI  263 (276)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             CCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHHcCCCHhHCcCHHHH
Confidence            35789999999999999999999999876554433222 111  111122356789999999999999999999999999


Q ss_pred             hcC
Q psy3253         233 LNH  235 (251)
Q Consensus       233 l~h  235 (251)
                      +++
T Consensus       264 l~~  266 (276)
T d1uwha_         264 LAS  266 (276)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            987

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-48  Score=317.81  Aligned_cols=200  Identities=25%  Similarity=0.454  Sum_probs=162.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++..++..++|||||++|+|.+++......+++..++.++.||+.||+|||+++|+|||||     
T Consensus        54 l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlK-----  128 (263)
T d1sm2a_          54 MMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLA-----  128 (263)
T ss_dssp             HHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCS-----
T ss_pred             HHhcCCCCcccccceeccCCceEEEEEecCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccc-----
Confidence            357899999999999999999999999999999999998666789999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.+||+|||+++....... ......||+.|+|||++.+..++
T Consensus       129 ----------------------------p~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~  180 (263)
T d1sm2a_         129 ----------------------------ARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYS  180 (263)
T ss_dssp             ----------------------------GGGEEECGGGCEEECSCC------------------CTTSCCHHHHTTCCCC
T ss_pred             ----------------------------hhheeecCCCCeEecccchheeccCCCceeecceecCcccCChHHhcCCCCC
Confidence                                        8899999999999999999976543322 22334678999999999999999


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++|||||||++|+|+| |.+||...........+.....  ...+..+++++.+++.+||+.||++|||++|+++|
T Consensus       181 ~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~--~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~  255 (263)
T d1sm2a_         181 SKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFR--LYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ  255 (263)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTCC--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             chhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcCC--CCCccccCHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence            99999999999999999 5677766655555544444322  23466789999999999999999999999999976

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-47  Score=311.20  Aligned_cols=200  Identities=23%  Similarity=0.421  Sum_probs=175.8

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||+++++++.++..+++||||+++|+|.+++......+++..+..++.|++.||+|||+.||+|||||     
T Consensus        53 ~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk-----  127 (258)
T d1k2pa_          53 MMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLA-----  127 (258)
T ss_dssp             HHTCCCTTBCCEEEEECCSSSEEEEEECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCS-----
T ss_pred             HHhcCCCceeeEEEEEeeCCceEEEEEccCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCccccccc-----
Confidence            357899999999999999999999999999999999988677889999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.+||+|||+++....... ......+|+.|+|||.+.+..++
T Consensus       128 ----------------------------~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~  179 (258)
T d1k2pa_         128 ----------------------------ARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFS  179 (258)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHHCCCC
T ss_pred             ----------------------------ceeEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcCCcHHhcCCCCC
Confidence                                        8899999999999999999975543322 22335678899999999999999


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++|||||||++|+|+| |+.||.+.+.......+.....  ...+..+++++.+||.+||+.||++|||++|+++|
T Consensus       180 ~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~~--~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  254 (258)
T d1k2pa_         180 SKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLR--LYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN  254 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCC--CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             cceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCCC--CCCcccccHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence            99999999999999998 8999988877776665655433  33467889999999999999999999999999987

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-47  Score=315.36  Aligned_cols=193  Identities=26%  Similarity=0.380  Sum_probs=163.1

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCccc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGA-GSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLVY   83 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~-gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~~   83 (251)
                      .|||||+++++|.+++..|+||||+.+ +++.+++. .+..+++.+++.++.||+.||.|||++||+|||||        
T Consensus        67 ~h~nIv~~~~~~~~~~~~~lv~e~~~~~~~l~~~~~-~~~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiK--------  137 (273)
T d1xwsa_          67 GFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFIT-ERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIK--------  137 (273)
T ss_dssp             SSCSBCCEEEEEECSSEEEEEEECCSSEEEHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS--------
T ss_pred             CCCCccEEEEEEeeCCeEEEEEEeccCcchHHHHHh-ccCCCCHHHHHHHHHHHHHHHHHHHHCCCccccCc--------
Confidence            499999999999999999999999975 58888886 45789999999999999999999999999999988        


Q ss_pred             cccccccccccccchhhhhhhhhcccCceecCCC-CCeEecccccccccCcccccccccccccccccccccccCCC-Ccc
Q psy3253          84 DRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTE-GHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY-DCV  161 (251)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~  161 (251)
                                               |+||+++.+ +.+||+|||+++.....  ......||+.|+|||++.+..+ +.+
T Consensus       138 -------------------------p~NIll~~~~~~vkl~DFG~a~~~~~~--~~~~~~GT~~y~aPE~~~~~~~~~~~  190 (273)
T d1xwsa_         138 -------------------------DENILIDLNRGELKLIDFGSGALLKDT--VYTDFDGTRVYSPPEWIRYHRYHGRS  190 (273)
T ss_dssp             -------------------------GGGEEEETTTTEEEECCCTTCEECCSS--CBCCCCSCGGGSCHHHHHHSCBCHHH
T ss_pred             -------------------------ccceEEecCCCeEEECccccceecccc--cccccccCCCcCCHHHHcCCCCCCcc
Confidence                                     888888754 68999999999765432  2344578999999999987665 567


Q ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         162 ADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       162 ~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +||||+||++|+|++|+.||.+.+.  ...    .   ....+..+|+++.+||.+||+.||++|||++|+++||||++.
T Consensus       191 ~DiwSlGvilyell~g~~Pf~~~~~--i~~----~---~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~  261 (273)
T d1xwsa_         191 AAVWSLGILLYDMVCGDIPFEHDEE--IIR----G---QVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDV  261 (273)
T ss_dssp             HHHHHHHHHHHHHHHSSCSCCSHHH--HHH----C---CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSC
T ss_pred             cccccceeeehhHhhCCCCCCCchH--Hhh----c---ccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCC
Confidence            9999999999999999999975432  111    1   122345689999999999999999999999999999999875


Q ss_pred             c
Q psy3253         242 D  242 (251)
Q Consensus       242 ~  242 (251)
                      .
T Consensus       262 ~  262 (273)
T d1xwsa_         262 L  262 (273)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-46  Score=313.17  Aligned_cols=205  Identities=20%  Similarity=0.344  Sum_probs=170.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++|||||+++++|.+++..++|||||++|+|.+++... ...+++..++.++.||+.||+|||++||+|||||    
T Consensus        67 l~~l~HpnIv~~~~~~~~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlK----  142 (287)
T d1opja_          67 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLA----  142 (287)
T ss_dssp             HHHCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS----
T ss_pred             HHhCCCCCEecCCccEeeCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccc----
Confidence            45789999999999999999999999999999999999743 4678999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.+||+|||+++....... ......+++.|+|||++.+..+
T Consensus       143 -----------------------------p~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~  193 (287)
T d1opja_         143 -----------------------------ARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKF  193 (287)
T ss_dssp             -----------------------------GGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCC
T ss_pred             -----------------------------cCeEEECCCCcEEEccccceeecCCCCceeeccccccccccChHHHcCCCC
Confidence                                         8899999999999999999986644322 2233457889999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCCCCC-CCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChh
Q psy3253         159 DCVADMWSLGITALEMAEGKPPY-GDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEF  237 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~  237 (251)
                      +.++|||||||++|+|++|..|| .+.+.......+....  ....+..+++++.+||.+||+.||++|||++|+++  +
T Consensus       194 ~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~--~  269 (287)
T d1opja_         194 SIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDY--RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ--A  269 (287)
T ss_dssp             SHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH--H
T ss_pred             CchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCC--CCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHH--H
Confidence            99999999999999999966554 5544444443333332  23346778999999999999999999999999974  5


Q ss_pred             hhhcc
Q psy3253         238 IQRHD  242 (251)
Q Consensus       238 ~~~~~  242 (251)
                      |+...
T Consensus       270 L~~~~  274 (287)
T d1opja_         270 FETMF  274 (287)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            65543

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-47  Score=313.75  Aligned_cols=204  Identities=25%  Similarity=0.448  Sum_probs=170.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR-KKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~-~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++|||||++++++.+ +..++|||||++|+|.+++... ...+++..++.++.||+.||.|||++||+|||||    
T Consensus        62 l~~l~HpnIv~~~g~~~~-~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiK----  136 (272)
T d1qpca_          62 MKQLQHQRLVRLYAVVTQ-EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLR----  136 (272)
T ss_dssp             HHHCCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCS----
T ss_pred             HHhCCCCCEeEEEeeecc-CCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccc----
Confidence            357899999999998854 5679999999999999987522 3469999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++.+||+|||+|+....... ......+|+.|+|||++.+..+
T Consensus       137 -----------------------------p~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~  187 (272)
T d1qpca_         137 -----------------------------AANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTF  187 (272)
T ss_dssp             -----------------------------GGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEE
T ss_pred             -----------------------------hhheeeecccceeeccccceEEccCCccccccccCCcccccChHHHhCCCC
Confidence                                         9999999999999999999987653322 2334567889999999998899


Q ss_pred             CcchhHHHHHHHHHHHHhC-CCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc--C
Q psy3253         159 DCVADMWSLGITALEMAEG-KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN--H  235 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~--h  235 (251)
                      +.++|||||||++|+|+|| .+|+...........+.....  ...+..+++++.+|+.+||+.||++|||++|+++  |
T Consensus       188 ~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~~~--~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~  265 (272)
T d1qpca_         188 TIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYR--MVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLE  265 (272)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCC--CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCC--CCCcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhh
Confidence            9999999999999999995 556666555555544444332  2346778999999999999999999999999998  7


Q ss_pred             hhhhh
Q psy3253         236 EFIQR  240 (251)
Q Consensus       236 p~~~~  240 (251)
                      +||..
T Consensus       266 ~~fts  270 (272)
T d1qpca_         266 DFFTA  270 (272)
T ss_dssp             HHHHH
T ss_pred             hhhhc
Confidence            88864

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.4e-46  Score=312.41  Aligned_cols=206  Identities=28%  Similarity=0.428  Sum_probs=165.2

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||+++++|.++...+++|||+.++++..+. .....+++..++.++.||+.||+|||++||+|||||     
T Consensus        54 l~~l~hpnIv~~~~~~~~~~~~~i~~e~~~~~~~~~~~-~~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiK-----  127 (286)
T d1ob3a_          54 LKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLD-VCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLK-----  127 (286)
T ss_dssp             GGGCCCTTBCCEEEEEECSSCEEEEEECCSEEHHHHHH-TSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HHhCCCCcEEeeeeecccCCceeEEEEeehhhhHHHHH-hhcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCC-----
Confidence            56899999999999999999999999999776555554 467889999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc-CCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE-IGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~  159 (251)
                                                  |+||+++.++.+|++|||.+..............+++.|+|||.+.+ ..++
T Consensus       128 ----------------------------p~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~  179 (286)
T d1ob3a_         128 ----------------------------PQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYS  179 (286)
T ss_dssp             ----------------------------GGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCC
T ss_pred             ----------------------------CceeeEcCCCCEEecccccceecccCccccceecccchhhhHHHHhCCCCCC
Confidence                                        88999999999999999999876554444455568899999999965 4568


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---C-----------------------CCCCCCCCCCCCCHHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---T-----------------------KPPPSFREPDVWTPEFID  213 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~-----------------------~~~~~~~~~~~~~~~~~~  213 (251)
                      .++|+||+||++|+|++|++||.+.+.......+.   .                       ...+.......+++++.+
T Consensus       180 ~~~DiwslGv~l~el~~G~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~d  259 (286)
T d1ob3a_         180 TTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGID  259 (286)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHH
T ss_pred             cceeehhcCcHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHHH
Confidence            99999999999999999999997654433222110   0                       000001123557899999


Q ss_pred             HHHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         214 FVSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       214 li~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      ||.+||+.||++|||++|+++||||++
T Consensus       260 li~~~L~~dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         260 LLSKMLKLDPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             HHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             HHHHHccCChhHCcCHHHHhcCcccCc
Confidence            999999999999999999999999985

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-46  Score=311.28  Aligned_cols=199  Identities=27%  Similarity=0.494  Sum_probs=162.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++. .+.+|+||||+.+|+|.+++......+++..++.++.||+.||.|||++|++|||||     
T Consensus        62 l~~l~HpnIv~l~~~~~-~~~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlK-----  135 (273)
T d1mp8a_          62 MRQFDHPHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIA-----  135 (273)
T ss_dssp             HHTCCCTTBCCEEEEEC-SSSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS-----
T ss_pred             HHhCCCCCEeeEEEEEe-cCeEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccCeeccccc-----
Confidence            45789999999999995 567899999999999999988777889999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGYD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~  159 (251)
                                                  |+||+++.++.+||+|||+++....... ......+|+.|+|||++.+..++
T Consensus       136 ----------------------------p~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~  187 (273)
T d1mp8a_         136 ----------------------------ARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFT  187 (273)
T ss_dssp             ----------------------------GGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCS
T ss_pred             ----------------------------hhheeecCCCcEEEccchhheeccCCcceeccceecCcccchhhHhccCCCC
Confidence                                        8899999999999999999976543222 23344578899999999999999


Q ss_pred             cchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         160 CVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      .++|||||||++|+|++ |.+||.+.........+......  +.+..+|+++.+||.+||+.||++|||++|+++|
T Consensus       188 ~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~  262 (273)
T d1mp8a_         188 SASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERL--PMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  262 (273)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence            99999999999999987 89999887777666555544332  3467889999999999999999999999999976

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-46  Score=307.16  Aligned_cols=199  Identities=23%  Similarity=0.380  Sum_probs=163.5

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++.+....++|||||.+|+|.+++......+++.++..++.||+.||.|||++||+|||||     
T Consensus        63 l~~l~H~nIv~~~g~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlK-----  137 (283)
T d1mqba_          63 MGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLA-----  137 (283)
T ss_dssp             HHTCCCTTBCCEEEEECSSSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HHhcCCCCEeeeeEEEecCCceEEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccccccCccc-----
Confidence            457899999999999999999999999999999999988777889999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---cccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.+||+|||+++.......   ......||+.|+|||++.+..
T Consensus       138 ----------------------------p~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~  189 (283)
T d1mqba_         138 ----------------------------ARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRK  189 (283)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCC
T ss_pred             ----------------------------cceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCC
Confidence                                        9999999999999999999976543221   122345788999999999999


Q ss_pred             CCcchhHHHHHHHHHHHHhC-CCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         158 YDCVADMWSLGITALEMAEG-KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ++.++|||||||++|+|++| .+|+...........+..+..  ...+..+++++.+||.+||+.||++|||++|+++
T Consensus       190 ~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~  265 (283)
T d1mqba_         190 FTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFR--LPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS  265 (283)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCC--CCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             CCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCC--CCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHH
Confidence            99999999999999999995 455555555555444444432  2346678999999999999999999999999986

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-45  Score=306.03  Aligned_cols=206  Identities=24%  Similarity=0.398  Sum_probs=165.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHH-hCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRL-RKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~-~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++|||||++++++.+ +..++|||||.+|+|.+++.. ....+++.+++.++.||+.||+|||++|++|||||    
T Consensus        66 l~~l~h~nIv~~~g~~~~-~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlK----  140 (285)
T d1fmka3          66 MKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR----  140 (285)
T ss_dssp             HHHCCCTTBCCEEEEECS-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS----
T ss_pred             HHhcccCCEeEEEEEEec-CCeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheeccccc----
Confidence            357899999999999854 568999999999999988853 34679999999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-cccccccccccccccccccCCC
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-KRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                   |+||+++.++++||+|||+++....... ......+|+.|+|||.+....+
T Consensus       141 -----------------------------p~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  191 (285)
T d1fmka3         141 -----------------------------AANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRF  191 (285)
T ss_dssp             -----------------------------GGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCC
T ss_pred             -----------------------------ceEEEECCCCcEEEcccchhhhccCCCceeeccccccccccChHHHhCCCC
Confidence                                         9999999999999999999976543322 2233567899999999999999


Q ss_pred             CcchhHHHHHHHHHHHHhCC-CCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc--C
Q psy3253         159 DCVADMWSLGITALEMAEGK-PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN--H  235 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~--h  235 (251)
                      +.++|||||||++|+|++|. +|+.+.........+.....  ...+..+++++.++|.+||+.||++|||+++|++  +
T Consensus       192 ~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~  269 (285)
T d1fmka3         192 TIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYR--MPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLE  269 (285)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCC--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCC--CCCCcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHh
Confidence            99999999999999999955 55555555545544444332  2346778999999999999999999999999987  7


Q ss_pred             hhhhhcc
Q psy3253         236 EFIQRHD  242 (251)
Q Consensus       236 p~~~~~~  242 (251)
                      +||+...
T Consensus       270 ~~~~~~~  276 (285)
T d1fmka3         270 DYFTSTE  276 (285)
T ss_dssp             TTTSCSC
T ss_pred             hhhcCCC
Confidence            8886543

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-45  Score=309.69  Aligned_cols=210  Identities=26%  Similarity=0.341  Sum_probs=164.1

Q ss_pred             CCCCCCCccceeeeeEee------CCeEEEEEEccCCCCHHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy3253           1 MQQCDSPYVVKYYGSYFK------NTDLWIVMEYCGAGSVSDIMR--LRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR   72 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~------~~~~~lv~e~~~~gsL~~~~~--~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~   72 (251)
                      |++++||||++++++|..      ..++|+|||||+++.+..+..  .....+++.+++.++.||+.||+|||++||+||
T Consensus        67 l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHr  146 (350)
T d1q5ka_          67 MRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHR  146 (350)
T ss_dssp             HHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECC
T ss_pred             HHhcCCCCCCcEEEEEEecCccCCceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            357899999999999853      345899999997654433332  245679999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCC-CeEecccccccccCccccccccccccccccccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPE  151 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  151 (251)
                      |||                                 |+||+++.++ .+||+|||++...... .......|++.|+|||
T Consensus       147 DiK---------------------------------p~NILl~~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE  192 (350)
T d1q5ka_         147 DIK---------------------------------PQNLLLDPDTAVLKLCDFGSAKQLVRG-EPNVSYICSRYYRAPE  192 (350)
T ss_dssp             CCC---------------------------------GGGEEECTTTCCEEECCCTTCEECCTT-SCCCSCCSCTTSCCHH
T ss_pred             CCC---------------------------------cceEEEecCCCceeEecccchhhccCC-cccccccccccccChH
Confidence            998                                 8888988765 7999999999765443 2334456899999999


Q ss_pred             cccc-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCC-------------------CCCCC-------CCCC
Q psy3253         152 VIQE-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPT-------------------KPPPS-------FREP  204 (251)
Q Consensus       152 ~~~~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~-------------------~~~~~-------~~~~  204 (251)
                      .+.+ ..++.++||||+||++|+|++|.+||...+.......+..                   ...+.       ....
T Consensus       193 ~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (350)
T d1q5ka_         193 LIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFR  272 (350)
T ss_dssp             HHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSC
T ss_pred             HhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcc
Confidence            8764 5789999999999999999999999976654333222100                   00000       0112


Q ss_pred             CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         205 DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       205 ~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      ...++++.+||.+||++||++|||++|+|+||||++....
T Consensus       273 ~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~  312 (350)
T d1q5ka_         273 PRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDP  312 (350)
T ss_dssp             TTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGGCT
T ss_pred             cCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccccCC
Confidence            4468999999999999999999999999999999976543

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-45  Score=308.62  Aligned_cols=200  Identities=25%  Similarity=0.422  Sum_probs=169.1

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++.++ ..++++||+.+|+|.+++......+++..++.++.||+.||.|||++||+|||||     
T Consensus        65 l~~l~HpnIv~l~g~~~~~-~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlK-----  138 (317)
T d1xkka_          65 MASVDNPHVCRLLGICLTS-TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLA-----  138 (317)
T ss_dssp             HHHCCCTTBCCEEEEEESS-SEEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCC-----
T ss_pred             HHhCCCCCEeeEEEEEecC-CeeEEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcch-----
Confidence            3578999999999999765 5788899999999999998778899999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccc--ccccccccccccccccccCCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAK--RNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                  |+||+++.++.+||+|||+++........  .....||+.|+|||++.+..+
T Consensus       139 ----------------------------p~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~  190 (317)
T d1xkka_         139 ----------------------------ARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIY  190 (317)
T ss_dssp             ----------------------------GGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCC
T ss_pred             ----------------------------hhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhcCCC
Confidence                                        88999999999999999999865433222  223457899999999999999


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      +.++|||||||++|+|+| |.+||.+.+.......+..+..  ...+..+++++.+|+.+||+.||++|||++|+++|.
T Consensus       191 ~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~~~--~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l  267 (317)
T d1xkka_         191 THQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGER--LPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEF  267 (317)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHTCC--CCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             ChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCC--CCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHH
Confidence            999999999999999998 8999987766655544444332  234677899999999999999999999999999873

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-45  Score=299.81  Aligned_cols=197  Identities=27%  Similarity=0.451  Sum_probs=163.5

Q ss_pred             CCCCCCCccceeeeeEee-CCeEEEEEEccCCCCHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK-NTDLWIVMEYCGAGSVSDIMRLRK-KTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~-~~~~~lv~e~~~~gsL~~~~~~~~-~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      |++++||||+++++++.+ .+.+|+||||+++|+|.+++..+. ..+++..++.++.||+.||.|||+.+++|||||   
T Consensus        54 l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlk---  130 (262)
T d1byga_          54 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLA---  130 (262)
T ss_dssp             HTTCCCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS---
T ss_pred             HHhCCCCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccc---
Confidence            468999999999999854 466899999999999999996443 468999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCCC
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGY  158 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  158 (251)
                                                    |+||+++.++.++++|||+++.....   .....++..|+|||.+.+..+
T Consensus       131 ------------------------------p~Nil~~~~~~~kl~dfg~s~~~~~~---~~~~~~~~~y~aPE~l~~~~~  177 (262)
T d1byga_         131 ------------------------------ARNVLVSEDNVAKVSDFGLTKEASST---QDTGKLPVKWTAPEALREKKF  177 (262)
T ss_dssp             ------------------------------GGGEEECTTSCEEECCCCC---------------CCTTTSCHHHHHHCCC
T ss_pred             ------------------------------hHhheecCCCCEeecccccceecCCC---CccccccccCCChHHHhCCCC
Confidence                                          89999999999999999999765432   233456889999999998999


Q ss_pred             CcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcC
Q psy3253         159 DCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNH  235 (251)
Q Consensus       159 ~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~h  235 (251)
                      +.++|||||||++|+|+| |.+||...+.......+.....+  +.+..+++++.+||.+||+.||++|||++|++++
T Consensus       178 t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~  253 (262)
T d1byga_         178 STKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKM--DAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQ  253 (262)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCC--CCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence            999999999999999998 78999887777777666554433  3467789999999999999999999999999863

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-45  Score=309.16  Aligned_cols=209  Identities=27%  Similarity=0.457  Sum_probs=171.8

Q ss_pred             CCCCC-CccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDS-PYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~h-pniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      ++++| |||+++++++.+....+++|||+.+|+|.+++. ....+.+..++.++.||+.||+|||++|++|||||     
T Consensus        83 ~~l~h~pnIv~~~~~~~~~~~~~~v~e~~~~~~L~~~i~-~~~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiK-----  156 (322)
T d1vzoa_          83 EHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLS-QRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIK-----  156 (322)
T ss_dssp             HHHHTCTTBCCEEEEEEETTEEEEEECCCCSCBHHHHHH-HHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----
T ss_pred             HhccCCCeEEEeeeeeccCCceeeeeecccccHHHHHHH-hcccccHHHHHHHHHHHHHHHHHhhcCCEEeccCC-----
Confidence            45655 899999999999999999999999999999997 45678899999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcc-cccccccccccccccccccccC--C
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDT-MAKRNTVIGTPFWMAPEVIQEI--G  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~~~~~y~aPE~~~~~--~  157 (251)
                                                  |+||+++.++.++|+|||+++..... ........+++.|+|||.+.+.  .
T Consensus       157 ----------------------------p~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~  208 (322)
T d1vzoa_         157 ----------------------------LENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSG  208 (322)
T ss_dssp             ----------------------------GGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC--
T ss_pred             ----------------------------ccceeecCCCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcC
Confidence                                        88999999999999999999765432 2234456789999999999653  4


Q ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccC-----CHHH
Q psy3253         158 YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERA-----TASE  231 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp-----s~~e  231 (251)
                      ++.++||||+||++|+|++|+.||.+.........+... .......+..+++++.+||.+||++||++||     |++|
T Consensus       209 ~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~e  288 (322)
T d1vzoa_         209 HDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADE  288 (322)
T ss_dssp             -CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHH
T ss_pred             CCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcccCCCCCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHH
Confidence            678999999999999999999999765444332222111 1112233567899999999999999999999     5899


Q ss_pred             HhcChhhhhccCC
Q psy3253         232 MLNHEFIQRHDTD  244 (251)
Q Consensus       232 vl~hp~~~~~~~~  244 (251)
                      +++||||++.+|+
T Consensus       289 il~Hpff~~i~~~  301 (322)
T d1vzoa_         289 IKEHLFFQKINWD  301 (322)
T ss_dssp             HHTSGGGTTCCHH
T ss_pred             HHcCHhhcCCCHH
Confidence            9999999987754

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-44  Score=298.29  Aligned_cols=207  Identities=24%  Similarity=0.350  Sum_probs=169.9

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++||||++++++|.+....+++++++.+++|..++. ..+.+++..++.++.|++.||+|||++||+|||||     
T Consensus        55 l~~l~h~niv~~~~~~~~~~~~~iv~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiK-----  128 (292)
T d1unla_          55 LKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDS-CNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLK-----  128 (292)
T ss_dssp             HTTCCCTTBCCEEEEEECSSEEEEEEECCSEEHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-----
T ss_pred             HHhcCcCCEEeeccccccccceeEEeeeccccccccccc-cccccchhHHHHHHHHHHHHHHHhhcCCEeeeccc-----
Confidence            468999999999999999999999999999988887775 67889999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccccCC-CC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIG-YD  159 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~  159 (251)
                                                  |+||+++.++.+||+|||.++.............+++.|.|||.+.... ++
T Consensus       129 ----------------------------P~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~  180 (292)
T d1unla_         129 ----------------------------PQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYS  180 (292)
T ss_dssp             ----------------------------GGGEEECTTCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCC
T ss_pred             ----------------------------CcccccccCCceeeeecchhhcccCCCccceeeccccchhhhhHhccCCCCC
Confidence                                        8899999999999999999987765544445556778899999987655 68


Q ss_pred             cchhHHHHHHHHHHHHhCCCCCCCC-Ccchhhhhc---C-----------------------CCCCCCCCCCCCCCHHHH
Q psy3253         160 CVADMWSLGITALEMAEGKPPYGDI-HPMRAIFMI---P-----------------------TKPPPSFREPDVWTPEFI  212 (251)
Q Consensus       160 ~~~DvwslG~~l~~l~~g~~p~~~~-~~~~~~~~~---~-----------------------~~~~~~~~~~~~~~~~~~  212 (251)
                      .++||||+||++|+|++|..||... +.......+   .                       ............+++++.
T Consensus       181 ~~~DiwSlG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  260 (292)
T d1unla_         181 TSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGR  260 (292)
T ss_dssp             THHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHH
T ss_pred             chhhccccchHHHHHhhCCCCCCCCCCHHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHHHH
Confidence            8999999999999999999886432 222111110   0                       000111122455689999


Q ss_pred             HHHHHhhhcCcCccCCHHHHhcChhhhhc
Q psy3253         213 DFVSRCLVKNPEERATASEMLNHEFIQRH  241 (251)
Q Consensus       213 ~li~~~l~~~p~~Rps~~evl~hp~~~~~  241 (251)
                      +||.+||+.||++|||++|+|+||||++.
T Consensus       261 dll~~mL~~dP~~R~sa~e~L~Hp~f~~~  289 (292)
T d1unla_         261 DLLQNLLKCNPVQRISAEEALQHPYFSDF  289 (292)
T ss_dssp             HHHHHHSCSSGGGSCCHHHHTTSGGGSSC
T ss_pred             HHHHHHccCChhHCcCHHHHhcChhhcCC
Confidence            99999999999999999999999999864

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-45  Score=301.50  Aligned_cols=203  Identities=24%  Similarity=0.445  Sum_probs=170.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      |++++|||||++++++.+ ...++|||||++|+|.+++..+...+++..++.++.||+.||.|||++||+|||||     
T Consensus        65 l~~l~H~nIv~~~g~~~~-~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDik-----  138 (273)
T d1u46a_          65 MHSLDHRNLIRLYGVVLT-PPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLA-----  138 (273)
T ss_dssp             HHHCCCTTBCCEEEEECS-SSCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----
T ss_pred             HHhCCCCCEEEEEEEEee-cchheeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeec-----
Confidence            357899999999999965 46799999999999999988777889999999999999999999999999999988     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---cccccccccccccccccccCC
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEVIQEIG  157 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~  157 (251)
                                                  |+||+++.++.+||+|||+++.......   ......++..|+|||.+.+..
T Consensus       139 ----------------------------p~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~  190 (273)
T d1u46a_         139 ----------------------------ARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRT  190 (273)
T ss_dssp             ----------------------------GGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCE
T ss_pred             ----------------------------HHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCC
Confidence                                        8899999999999999999987643322   122334677899999999999


Q ss_pred             CCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcCh
Q psy3253         158 YDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHE  236 (251)
Q Consensus       158 ~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp  236 (251)
                      ++.++|||||||++|+|+| |..||.+.+.......+.... ...+.+..+|+++.+||.+||+.||++|||++|++  +
T Consensus       191 ~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~-~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~--~  267 (273)
T d1u46a_         191 FSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEG-ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALR--D  267 (273)
T ss_dssp             EEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSC-CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH--H
T ss_pred             CCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCC-CCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHH--H
Confidence            9999999999999999998 899998877776665554332 23345677899999999999999999999999997  5


Q ss_pred             hhhh
Q psy3253         237 FIQR  240 (251)
Q Consensus       237 ~~~~  240 (251)
                      ++++
T Consensus       268 ~L~~  271 (273)
T d1u46a_         268 FLLE  271 (273)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-45  Score=304.63  Aligned_cols=204  Identities=25%  Similarity=0.426  Sum_probs=172.5

Q ss_pred             CCCC-CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHh---------------CCCCCHHHHHHHHHHHHHHHHHH
Q psy3253           1 MQQC-DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLR---------------KKTLSEDEIATILCDTLKGLEYL   64 (251)
Q Consensus         1 l~~l-~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~---------------~~~l~~~~~~~~~~~i~~~l~~L   64 (251)
                      |+++ +|||||++++++.+++.+++||||+++|+|.++++..               ...+++..+..++.||+.||.||
T Consensus        64 l~~l~~HpnIv~~~~~~~~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~l  143 (309)
T d1fvra_          64 LCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL  143 (309)
T ss_dssp             HTTCCCCTTBCCEEEEEEETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCCEeeEEEEEecCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence            4566 7999999999999999999999999999999999632               25799999999999999999999


Q ss_pred             HhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccc
Q psy3253          65 HLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGT  144 (251)
Q Consensus        65 H~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  144 (251)
                      |++|++|||||                                 |+||+++.++.+||+|||+++..... .......+|
T Consensus       144 H~~~iiHrDlk---------------------------------p~NIL~~~~~~~kl~DfG~a~~~~~~-~~~~~~~gt  189 (309)
T d1fvra_         144 SQKQFIHRDLA---------------------------------ARNILVGENYVAKIADFGLSRGQEVY-VKKTMGRLP  189 (309)
T ss_dssp             HHTTEECSCCS---------------------------------GGGEEECGGGCEEECCTTCEESSCEE-CCC----CC
T ss_pred             hcCCccccccc---------------------------------cceEEEcCCCceEEcccccccccccc-ccccceecC
Confidence            99999999988                                 88999999999999999999765433 222344678


Q ss_pred             cccccccccccCCCCcchhHHHHHHHHHHHHhCC-CCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCc
Q psy3253         145 PFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK-PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNP  223 (251)
Q Consensus       145 ~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  223 (251)
                      ..|+|||.+.+..++.++|||||||++|+|++|. +||.+.+.......+..+..  ...+..+++++.+||.+||+.||
T Consensus       190 ~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~li~~cl~~dP  267 (309)
T d1fvra_         190 VRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYR--LEKPLNCDDEVYDLMRQCWREKP  267 (309)
T ss_dssp             TTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCC--CCCCTTBCHHHHHHHHHHTCSSG
T ss_pred             CcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCC--CCCCccCCHHHHHHHHHHcCCCh
Confidence            8999999999999999999999999999999964 67877777776666655433  33467789999999999999999


Q ss_pred             CccCCHHHHhcC--hhhhh
Q psy3253         224 EERATASEMLNH--EFIQR  240 (251)
Q Consensus       224 ~~Rps~~evl~h--p~~~~  240 (251)
                      ++|||++||+++  .+++.
T Consensus       268 ~~RPs~~eil~~L~~i~~~  286 (309)
T d1fvra_         268 YERPSFAQILVSLNRMLEE  286 (309)
T ss_dssp             GGSCCHHHHHHHHHHHHHS
T ss_pred             hHCcCHHHHHHHHHHHHhc
Confidence            999999999987  44443

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.8e-45  Score=302.45  Aligned_cols=206  Identities=25%  Similarity=0.464  Sum_probs=163.8

Q ss_pred             CCCCCCCccceeeeeEeeCC----eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKA   76 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~----~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~   76 (251)
                      |++++|||||++++++....    ..|+|||||+|++|.+++. ..+.+++.+++.++.||+.||.|||++|++||||| 
T Consensus        61 l~~~~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~~-~~~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiK-  138 (277)
T d1o6ya_          61 AAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVH-TEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVK-  138 (277)
T ss_dssp             HHTCCCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHHH-HHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS-
T ss_pred             HHhcCCCCCCcccceeeeccCCCceEEEEEECCCCCEehhhhc-ccCCCCHHHHHHHHHHHHHHHHHHHhCCccCcccc-
Confidence            35789999999999997643    3899999999999999886 45689999999999999999999999999999988 


Q ss_pred             CCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc---cccccccccccccccccc
Q psy3253          77 GSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM---AKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        77 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~~~~y~aPE~~  153 (251)
                                                      |+||+++.++..+++|||.+.......   .......||+.|+|||++
T Consensus       139 --------------------------------P~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~  186 (277)
T d1o6ya_         139 --------------------------------PANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQA  186 (277)
T ss_dssp             --------------------------------GGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHH
T ss_pred             --------------------------------CcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHH
Confidence                                            889999999999999999886543221   223445689999999999


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC-CCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHH
Q psy3253         154 QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK-PPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEM  232 (251)
Q Consensus       154 ~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ev  232 (251)
                      .+..++.++||||+||++|+|+||.+||.+.+........... ..+.......+|+++.++|.+||+.||++||+..+.
T Consensus       187 ~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~  266 (277)
T d1o6ya_         187 RGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAE  266 (277)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHH
T ss_pred             cCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCCHhHCHhHHHH
Confidence            9999999999999999999999999999887766555443322 222223456789999999999999999999954444


Q ss_pred             hcChhhhh
Q psy3253         233 LNHEFIQR  240 (251)
Q Consensus       233 l~hp~~~~  240 (251)
                      +.|+|.+-
T Consensus       267 l~~~l~r~  274 (277)
T d1o6ya_         267 MRADLVRV  274 (277)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55788764

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-44  Score=308.34  Aligned_cols=204  Identities=27%  Similarity=0.482  Sum_probs=166.6

Q ss_pred             CCCCCCCccceeeeeEeeCC------eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT------DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~------~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |++++|||||+++++|....      ++|+||||| +.+|..+++  ...+++..++.++.||+.||.|||++||+||||
T Consensus        71 l~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDi  147 (346)
T d1cm8a_          71 LKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMK--HEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDL  147 (346)
T ss_dssp             HHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCC
T ss_pred             HHhcCCCCeeEEEEEeccCccccccceEEEEEecc-cccHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence            45789999999999997654      579999999 668888775  467999999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                      |                                 |+||+++.++.+|++|||+++.....   .....+|+.|+|||++.
T Consensus       148 K---------------------------------p~NIL~~~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE~~~  191 (346)
T d1cm8a_         148 K---------------------------------PGNLAVNEDCELKILDFGLARQADSE---MTGYVVTRWYRAPEVIL  191 (346)
T ss_dssp             C---------------------------------GGGEEECTTCCEEECCCTTCEECCSS---CCSSCSCGGGCCTHHHH
T ss_pred             C---------------------------------cchhhcccccccccccccceeccCCc---cccccccccccCHHHHc
Confidence            8                                 89999999999999999999766533   23456899999999987


Q ss_pred             c-CCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---------------------------CCCCC-CCCCCCC
Q psy3253         155 E-IGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---------------------------PTKPP-PSFREPD  205 (251)
Q Consensus       155 ~-~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---------------------------~~~~~-~~~~~~~  205 (251)
                      + ..++.++||||+||++|+|++|.+||.+.+........                           ..... .......
T Consensus       192 ~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (346)
T d1cm8a_         192 NWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILT  271 (346)
T ss_dssp             TTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCT
T ss_pred             CCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhcc
Confidence            6 45688999999999999999999999776543322111                           00000 0111235


Q ss_pred             CCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccC
Q psy3253         206 VWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDT  243 (251)
Q Consensus       206 ~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~  243 (251)
                      ..++++.+||.+||..||++|||++|+|+||||+....
T Consensus       272 ~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~~  309 (346)
T d1cm8a_         272 NASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHD  309 (346)
T ss_dssp             TCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC-
T ss_pred             CCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCCC
Confidence            57899999999999999999999999999999987654

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-44  Score=297.07  Aligned_cols=195  Identities=24%  Similarity=0.483  Sum_probs=169.6

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHHhCCc
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLHLRRK   69 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH~~~i   69 (251)
                      +|||||+++++|.++...++|||||++|+|.+++..+.               ..+++.+++.++.||+.||+|||+.|+
T Consensus        77 ~HpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~i  156 (299)
T d1fgka_          77 KHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKC  156 (299)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEecccccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCE
Confidence            79999999999999999999999999999999997443               358999999999999999999999999


Q ss_pred             cccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccc
Q psy3253          70 IHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFW  147 (251)
Q Consensus        70 iH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y  147 (251)
                      +|||||                                 |+||+++.++.+||+|||+++.......  ......+++.|
T Consensus       157 vHrDiK---------------------------------p~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y  203 (299)
T d1fgka_         157 IHRDLA---------------------------------ARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKW  203 (299)
T ss_dssp             CCSCCS---------------------------------GGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGG
T ss_pred             Eeeeec---------------------------------ccceeecCCCCeEeccchhhccccccccccccccCCCChhh
Confidence            999988                                 9999999999999999999986654322  22334578899


Q ss_pred             ccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCcc
Q psy3253         148 MAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEER  226 (251)
Q Consensus       148 ~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R  226 (251)
                      +|||.+.+..++.++|||||||++|+|++ |.+||.+.+.......+..+..  ...+..+++++.+||.+||+.||++|
T Consensus       204 ~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~~~i~~~~~--~~~p~~~~~~l~~li~~cl~~dP~~R  281 (299)
T d1fgka_         204 MAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHR--MDKPSNCTNELYMMMRDCWHAVPSQR  281 (299)
T ss_dssp             SCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCC--CCCCSSCCHHHHHHHHHHTCSSGGGS
T ss_pred             hhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHHHHHHcCCC--CCCCccchHHHHHHHHHHccCCHhHC
Confidence            99999999999999999999999999998 7899987777666555544433  33467789999999999999999999


Q ss_pred             CCHHHHhc
Q psy3253         227 ATASEMLN  234 (251)
Q Consensus       227 ps~~evl~  234 (251)
                      ||++||++
T Consensus       282 ps~~eil~  289 (299)
T d1fgka_         282 PTFKQLVE  289 (299)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence            99999985

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-43  Score=297.39  Aligned_cols=200  Identities=21%  Similarity=0.388  Sum_probs=165.7

Q ss_pred             CCCCCCCccceeeeeEee-CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK-NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSG   79 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~-~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni   79 (251)
                      |++++|||||++++++.. +...++|||||++|+|.+++......+++..++.++.|++.||.|||+.||+|||||    
T Consensus        82 l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK----  157 (311)
T d1r0pa_          82 MKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLA----  157 (311)
T ss_dssp             HHTCCCTTBCCCCEEEEETTTEEEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCS----
T ss_pred             HHhCCCCCEeEEeEEEEecCCceEEEEEEeecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccCcccCCcc----
Confidence            468899999999999875 457999999999999999998666788899999999999999999999999999988    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc----ccccccccccccccccccc
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA----KRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~  155 (251)
                                                   |+||+++.++.+||+|||+++.......    ......||+.|+|||.+..
T Consensus       158 -----------------------------~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  208 (311)
T d1r0pa_         158 -----------------------------ARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQT  208 (311)
T ss_dssp             -----------------------------GGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHH
T ss_pred             -----------------------------HHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHhc
Confidence                                         9999999999999999999986543221    2223457889999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHHhCCCCCCC-CCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         156 IGYDCVADMWSLGITALEMAEGKPPYGD-IHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       156 ~~~~~~~DvwslG~~l~~l~~g~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      ..++.++||||||+++|+|++|..||.. .+.......+..+..  ...+..+++++.+||.+||+.||++|||++||++
T Consensus       209 ~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g~~--~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~  286 (311)
T d1r0pa_         209 QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRR--LLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS  286 (311)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTTCC--CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCC--CCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence            9999999999999999999997766643 333333333333322  2346678999999999999999999999999998


Q ss_pred             C
Q psy3253         235 H  235 (251)
Q Consensus       235 h  235 (251)
                      |
T Consensus       287 ~  287 (311)
T d1r0pa_         287 R  287 (311)
T ss_dssp             H
T ss_pred             H
Confidence            8

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=6.9e-44  Score=298.23  Aligned_cols=203  Identities=24%  Similarity=0.400  Sum_probs=171.7

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-----------------------CCCCHHHHHHHHHHH
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-----------------------KTLSEDEIATILCDT   57 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-----------------------~~l~~~~~~~~~~~i   57 (251)
                      |++++||||+++++++.+....+++|||+.+|+|.+++....                       ..+++..++.++.|+
T Consensus        70 l~~l~h~niv~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi  149 (301)
T d1lufa_          70 MAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQV  149 (301)
T ss_dssp             HHTCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHH
T ss_pred             HHhcCCCCcccceeeeccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHH
Confidence            457899999999999999999999999999999999996432                       248899999999999


Q ss_pred             HHHHHHHHhCCccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc-
Q psy3253          58 LKGLEYLHLRRKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA-  136 (251)
Q Consensus        58 ~~~l~~LH~~~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~-  136 (251)
                      +.||+|||++|++|||||                                 |+||+++.++.+||+|||+++....... 
T Consensus       150 ~~gl~ylH~~~ivHrDlK---------------------------------p~NILld~~~~~Kl~DFGls~~~~~~~~~  196 (301)
T d1lufa_         150 AAGMAYLSERKFVHRDLA---------------------------------TRNCLVGENMVVKIADFGLSRNIYSADYY  196 (301)
T ss_dssp             HHHHHHHHHTTCCCSCCS---------------------------------GGGEEECGGGCEEECCCSCHHHHTGGGCB
T ss_pred             HHHhhhcccCCeEeeEEc---------------------------------ccceEECCCCcEEEccchhheeccCCccc
Confidence            999999999999999988                                 8899999999999999999975533221 


Q ss_pred             -cccccccccccccccccccCCCCcchhHHHHHHHHHHHHhCC-CCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHH
Q psy3253         137 -KRNTVIGTPFWMAPEVIQEIGYDCVADMWSLGITALEMAEGK-PPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDF  214 (251)
Q Consensus       137 -~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  214 (251)
                       ......+++.|+|||.+.+..++.++|||||||++|+|++|. +||.+.+..+....+.....+  ..+..+++++.+|
T Consensus       197 ~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~~~~~~--~~p~~~~~~~~~l  274 (301)
T d1lufa_         197 KADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNIL--ACPENCPLELYNL  274 (301)
T ss_dssp             C----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCC--CCCTTCCHHHHHH
T ss_pred             cccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHHHHHHHHcCCCC--CCCccchHHHHHH
Confidence             223456788999999999999999999999999999999985 788888777776666555433  3467789999999


Q ss_pred             HHHhhhcCcCccCCHHHHhcChhhhh
Q psy3253         215 VSRCLVKNPEERATASEMLNHEFIQR  240 (251)
Q Consensus       215 i~~~l~~~p~~Rps~~evl~hp~~~~  240 (251)
                      |.+||+.||++|||+.||+  .++++
T Consensus       275 i~~cl~~~P~~RPt~~ev~--~~L~~  298 (301)
T d1lufa_         275 MRLCWSKLPADRPSFCSIH--RILQR  298 (301)
T ss_dssp             HHHHTCSSGGGSCCHHHHH--HHHHH
T ss_pred             HHHHcCCChhHCcCHHHHH--HHHHH
Confidence            9999999999999999996  45554

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-43  Score=296.11  Aligned_cols=207  Identities=20%  Similarity=0.384  Sum_probs=176.6

Q ss_pred             CCCCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC---------CCCCHHHHHHHHHHHHHHHHHHHhCCccc
Q psy3253           1 MQQCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK---------KTLSEDEIATILCDTLKGLEYLHLRRKIH   71 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~---------~~l~~~~~~~~~~~i~~~l~~LH~~~iiH   71 (251)
                      |++++|||||++++++..+...++|||||.+|+|.+++....         ..+++..+..++.|++.||.|||+++|+|
T Consensus        77 l~~l~h~nIv~~~~~~~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivH  156 (308)
T d1p4oa_          77 MKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVH  156 (308)
T ss_dssp             GGGCCCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBC
T ss_pred             HHHcCCCCEeeeeeEEecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeee
Confidence            568999999999999999999999999999999999986332         34789999999999999999999999999


Q ss_pred             cCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc--ccccccccccccc
Q psy3253          72 RDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRNTVIGTPFWMA  149 (251)
Q Consensus        72 ~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~a  149 (251)
                      ||||                                 |+||+++.++++||+|||+++.......  ......+|+.|+|
T Consensus       157 rDlk---------------------------------~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~a  203 (308)
T d1p4oa_         157 RDLA---------------------------------ARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMS  203 (308)
T ss_dssp             SCCS---------------------------------GGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCC
T ss_pred             ceEc---------------------------------CCceeecCCceEEEeecccceeccCCcceeeccceecccccCC
Confidence            9988                                 9999999999999999999976543322  2233467899999


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHhC-CCCCCCCCcchhhhhcCCCCCCCCCCCCCCCHHHHHHHHHhhhcCcCccCC
Q psy3253         150 PEVIQEIGYDCVADMWSLGITALEMAEG-KPPYGDIHPMRAIFMIPTKPPPSFREPDVWTPEFIDFVSRCLVKNPEERAT  228 (251)
Q Consensus       150 PE~~~~~~~~~~~DvwslG~~l~~l~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  228 (251)
                      ||.+.+..++.++|||||||++|+|+|| .+||.+.+.......+.....  ...+..+++.+.++|.+||+.||++|||
T Consensus       204 Pe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~~--~~~p~~~~~~l~~li~~cl~~~P~~RPs  281 (308)
T d1p4oa_         204 PESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGL--LDKPDNCPDMLFELMRMCWQYNPKMRPS  281 (308)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCC--CCCCTTCCHHHHHHHHHHTCSSGGGSCC
T ss_pred             HHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhCCC--CCCcccchHHHHHHHHHHcCCChhHCcC
Confidence            9999999999999999999999999997 588888777666655544432  3346778999999999999999999999


Q ss_pred             HHHHhc------Chhhhhcc
Q psy3253         229 ASEMLN------HEFIQRHD  242 (251)
Q Consensus       229 ~~evl~------hp~~~~~~  242 (251)
                      ++||++      +|+|++.+
T Consensus       282 ~~~il~~L~~~~~~~~~~~~  301 (308)
T d1p4oa_         282 FLEIISSIKEEMEPGFREVS  301 (308)
T ss_dssp             HHHHHHHHGGGSCTTHHHHC
T ss_pred             HHHHHHHHHHhcCCCCcCCC
Confidence            999987      78887643

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-44  Score=301.63  Aligned_cols=208  Identities=24%  Similarity=0.401  Sum_probs=161.9

Q ss_pred             CCCCCCCccceeeeeEee--------CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy3253           1 MQQCDSPYVVKYYGSYFK--------NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHR   72 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~--------~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~   72 (251)
                      |++++||||+++++++..        +.+.|+||||+.++++.. .......+++..++.++.|++.||.|||++||+||
T Consensus        63 l~~l~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~~-~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHr  141 (318)
T d3blha1          63 LQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGL-LSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHR  141 (318)
T ss_dssp             HHHCCCTTBCCEEEEEEC----------CEEEEEECCCEEHHHH-HTCTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECC
T ss_pred             HHHhcCCCccceEeeeecccccccccCceEEEEEeccCCCccch-hhhcccccccHHHHHHHHHHHHHHHHhccCCEEec
Confidence            457899999999999854        356899999997765544 43456789999999999999999999999999999


Q ss_pred             CCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc----ccccccccccccc
Q psy3253          73 DIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM----AKRNTVIGTPFWM  148 (251)
Q Consensus        73 dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~~~y~  148 (251)
                      |||                                 |+||+++.++.+|++|||++.......    .......||+.|+
T Consensus       142 DlK---------------------------------p~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~  188 (318)
T d3blha1         142 DMK---------------------------------AANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYR  188 (318)
T ss_dssp             CCC---------------------------------GGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGC
T ss_pred             CcC---------------------------------chheeecCCCcEEeeecceeeecccccccccccccceecCHHHh
Confidence            988                                 889999999999999999997654321    1223346899999


Q ss_pred             cccccccC-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---CCCCCCCC-CC----------------C---
Q psy3253         149 APEVIQEI-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---PTKPPPSF-RE----------------P---  204 (251)
Q Consensus       149 aPE~~~~~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---~~~~~~~~-~~----------------~---  204 (251)
                      |||++.+. .++.++||||+||++|+|++|++||.+.+.......+   ........ ..                .   
T Consensus       189 aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (318)
T d3blha1         189 PPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKV  268 (318)
T ss_dssp             CHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCH
T ss_pred             hHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCCHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccc
Confidence            99998754 6899999999999999999999999766554433221   11100000 00                0   


Q ss_pred             ------CCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         205 ------DVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       205 ------~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                            ...++++.+||.+||++||++|||++|+|+||||+...
T Consensus       269 ~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~~p  312 (318)
T d3blha1         269 KDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDP  312 (318)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSSSS
T ss_pred             hhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcChhhccCC
Confidence                  01267789999999999999999999999999998643

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=4.2e-44  Score=302.89  Aligned_cols=205  Identities=23%  Similarity=0.376  Sum_probs=162.7

Q ss_pred             CCC-CCCccceeeeeEee--CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCC
Q psy3253           2 QQC-DSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGS   78 (251)
Q Consensus         2 ~~l-~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~N   78 (251)
                      +++ .||||++++++|..  ...+++|||||.+++|.++.    ..+++..++.++.||+.||.|||++||+|||||   
T Consensus        84 ~~l~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~----~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiK---  156 (328)
T d3bqca1          84 ENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLY----QTLTDYDIRFYMYEILKALDYCHSMGIMHRDVK---  156 (328)
T ss_dssp             HHHTTSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGTT----TSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCS---
T ss_pred             HhccCCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHHh----cCCCHHHHHHHHHHHHHHHHHHhhccccccccc---
Confidence            455 49999999999974  45699999999999997653    579999999999999999999999999999988   


Q ss_pred             CCccccccccccccccccchhhhhhhhhcccCceecCCCC-CeEecccccccccCcccccccccccccccccccccccC-
Q psy3253          79 GTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG-HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEI-  156 (251)
Q Consensus        79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  156 (251)
                                                    |+||+++.++ .++|+|||++...... .......+|+.|+|||.+.+. 
T Consensus       157 ------------------------------p~NILi~~~~~~vkl~DFG~a~~~~~~-~~~~~~~~t~~y~aPE~~~~~~  205 (328)
T d3bqca1         157 ------------------------------PHNVMIDHEHRKLRLIDWGLAEFYHPG-QEYNVRVASRYFKGPELLVDYQ  205 (328)
T ss_dssp             ------------------------------GGGEEEETTTTEEEECCGGGCEECCTT-CCCCSCCSCGGGCCHHHHTTCC
T ss_pred             ------------------------------ccceEEcCCCCeeeecccccceeccCC-CcccccccCccccCcccccCCC
Confidence                                          8888887655 5899999999765543 234455689999999998764 


Q ss_pred             CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhh-h---------------------------hcCCCC-C------CCC
Q psy3253         157 GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAI-F---------------------------MIPTKP-P------PSF  201 (251)
Q Consensus       157 ~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~-~---------------------------~~~~~~-~------~~~  201 (251)
                      .++.++||||+||++|++++|..||......... .                           ...... .      ...
T Consensus       206 ~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (328)
T d3bqca1         206 MYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHS  285 (328)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCT
T ss_pred             CCCcccchhhhhhhhHHhccCCCCCCCCchhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhcccc
Confidence            4799999999999999999999999544321100 0                           000000 0      011


Q ss_pred             CCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         202 REPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       202 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      .....+++++.+||.+||++||++|||++|+|+||||+...|+
T Consensus       286 ~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~Hp~F~~v~~~  328 (328)
T d3bqca1         286 ENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKD  328 (328)
T ss_dssp             TTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTSCCC
T ss_pred             cccccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCCCC
Confidence            1123468999999999999999999999999999999998875

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-44  Score=298.61  Aligned_cols=197  Identities=29%  Similarity=0.497  Sum_probs=157.9

Q ss_pred             CCCCccceeeeeEeeC-CeEEEEEEccCCCCHHHHHHHhC---------------CCCCHHHHHHHHHHHHHHHHHHHhC
Q psy3253           4 CDSPYVVKYYGSYFKN-TDLWIVMEYCGAGSVSDIMRLRK---------------KTLSEDEIATILCDTLKGLEYLHLR   67 (251)
Q Consensus         4 l~hpniv~l~~~~~~~-~~~~lv~e~~~~gsL~~~~~~~~---------------~~l~~~~~~~~~~~i~~~l~~LH~~   67 (251)
                      .+||||+++++++... ..+++|||||++|+|.++++...               ..+++.+++.++.||+.||.|||++
T Consensus        74 ~~h~~iv~~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~  153 (299)
T d1ywna1          74 GHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR  153 (299)
T ss_dssp             CCCTTBCCEEEEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCeEEEeeeeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC
Confidence            3799999999988654 56899999999999999997432               3588999999999999999999999


Q ss_pred             CccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--cccccccccc
Q psy3253          68 RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTP  145 (251)
Q Consensus        68 ~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~  145 (251)
                      ||+|||||                                 |+||+++.++.+||+|||+|+......  .......||+
T Consensus       154 ~ivHrDlK---------------------------------p~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~  200 (299)
T d1ywna1         154 KCIHRDLA---------------------------------ARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPL  200 (299)
T ss_dssp             TCCCSCCC---------------------------------GGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGG
T ss_pred             CCcCCcCC---------------------------------ccceeECCCCcEEEccCcchhhccccccccccCceeeCc
Confidence            99999988                                 889999999999999999997654322  2234456899


Q ss_pred             ccccccccccCCCCcchhHHHHHHHHHHHHhC-CCCCCCCCcchhhhh-cCCCCCCCCCCCCCCCHHHHHHHHHhhhcCc
Q psy3253         146 FWMAPEVIQEIGYDCVADMWSLGITALEMAEG-KPPYGDIHPMRAIFM-IPTKPPPSFREPDVWTPEFIDFVSRCLVKNP  223 (251)
Q Consensus       146 ~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g-~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p  223 (251)
                      .|+|||++.+..++.++|||||||++|+|++| .+||.+......... +..+.  ....+..+++++.++|.+||+.||
T Consensus       201 ~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~dP  278 (299)
T d1ywna1         201 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGT--RMRAPDYTTPEMYQTMLDCWHGEP  278 (299)
T ss_dssp             GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTC--CCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             cccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCC--CCCCCccCCHHHHHHHHHHcCCCh
Confidence            99999999999999999999999999999986 567866554433322 22222  233467789999999999999999


Q ss_pred             CccCCHHHHhcC
Q psy3253         224 EERATASEMLNH  235 (251)
Q Consensus       224 ~~Rps~~evl~h  235 (251)
                      ++|||++|+++|
T Consensus       279 ~~Rpt~~eil~~  290 (299)
T d1ywna1         279 SQRPTFSELVEH  290 (299)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hHCcCHHHHHHH
Confidence            999999999987

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-43  Score=302.21  Aligned_cols=208  Identities=25%  Similarity=0.416  Sum_probs=163.6

Q ss_pred             CCCCCCCccceeeeeEeeCC-----eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT-----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~-----~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      |++++||||+++++++....     ..|++ +|+.+|+|.+++..  ..+++..++.++.|++.||+|||++||+|||||
T Consensus        60 l~~l~hp~iv~~~~~~~~~~~~~~~~~~l~-~~~~~g~L~~~l~~--~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIK  136 (345)
T d1pmea_          60 LLRFRHENIIGINDIIRAPTIEQMKDVYLV-THLMGADLYKLLKT--QHLSNDHICYFLYQILRGLKYIHSANVLHRDLK  136 (345)
T ss_dssp             HHHCCCTTBCCCCEEECCSSTTTCCCEEEE-EECCCEEHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCC
T ss_pred             HHHcCCCCCCcEEEEEeeccccccceEEEE-EeecCCchhhhhhc--CCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCC
Confidence            45789999999999997543     34555 45558899999963  479999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc---cccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA---KRNTVIGTPFWMAPEV  152 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~~y~aPE~  152 (251)
                                                       |+||+++.++.+||+|||++........   ......||+.|+|||+
T Consensus       137 ---------------------------------p~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~  183 (345)
T d1pmea_         137 ---------------------------------PSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEI  183 (345)
T ss_dssp             ---------------------------------GGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGG
T ss_pred             ---------------------------------cceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHH
Confidence                                             8999999999999999999976543322   2344568899999999


Q ss_pred             cc-cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhc---------------------------CCCCCCC-CCC
Q psy3253         153 IQ-EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMI---------------------------PTKPPPS-FRE  203 (251)
Q Consensus       153 ~~-~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~---------------------------~~~~~~~-~~~  203 (251)
                      +. ...++.++||||+||++|+|++|.+||.+.+........                           ....... ...
T Consensus       184 l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (345)
T d1pmea_         184 MLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRL  263 (345)
T ss_dssp             TTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHH
T ss_pred             hhcCCCCCchhhhhccCceehHHhhCCCCCCCCCHHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHh
Confidence            84 456788999999999999999999999765432222111                           0000000 011


Q ss_pred             CCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         204 PDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       204 ~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      ...+++++.+|+.+||+.||++|||++|+|+||||+.....
T Consensus       264 ~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~hpf~~~~~~~  304 (345)
T d1pmea_         264 FPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDP  304 (345)
T ss_dssp             CTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTTCCG
T ss_pred             CCCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccCCCC
Confidence            34568899999999999999999999999999999965543

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-43  Score=299.41  Aligned_cols=206  Identities=21%  Similarity=0.408  Sum_probs=160.9

Q ss_pred             CCCCCCCccceeeeeEeeC-----CeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCC
Q psy3253           1 MQQCDSPYVVKYYGSYFKN-----TDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIK   75 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~-----~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik   75 (251)
                      |++++|||||++++++...     ...+++|+|+.+|+|.++++  ...+++.+++.++.||+.||+|||++||+|||||
T Consensus        71 l~~l~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~--~~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiK  148 (348)
T d2gfsa1          71 LKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVK--CQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLK  148 (348)
T ss_dssp             HHHCCCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHhcCCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhhcc--cccccHHHHHHHHHHHHHHHHHHHhCCCcccccC
Confidence            3578999999999999643     23456667777999999985  4679999999999999999999999999999988


Q ss_pred             CCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccccccc
Q psy3253          76 AGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE  155 (251)
Q Consensus        76 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  155 (251)
                                                       |+||+++.++.++++|||.+.....   ......|++.|+|||.+.+
T Consensus       149 ---------------------------------p~NILi~~~~~~kl~dfg~a~~~~~---~~~~~~g~~~y~apE~~~~  192 (348)
T d2gfsa1         149 ---------------------------------PSNLAVNEDCELKILDFGLARHTDD---EMTGYVATRWYRAPEIMLN  192 (348)
T ss_dssp             ---------------------------------GGGEEECTTCCEEECCC----CCTG---GGSSSCHHHHTSCHHHHTT
T ss_pred             ---------------------------------CccccccccccccccccchhcccCc---ccccccccccccCchhhcC
Confidence                                             8899999999999999999965442   3344568889999998766


Q ss_pred             C-CCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcCCC---C-------------------CCCCC------CCCC
Q psy3253         156 I-GYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIPTK---P-------------------PPSFR------EPDV  206 (251)
Q Consensus       156 ~-~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~~~---~-------------------~~~~~------~~~~  206 (251)
                      . .++.++||||+||++|+|++|.+||.+.+.......+...   .                   .....      ....
T Consensus       193 ~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (348)
T d2gfsa1         193 WMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIG  272 (348)
T ss_dssp             CSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTT
T ss_pred             CccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCC
Confidence            5 4688999999999999999999999765543332221100   0                   00000      1245


Q ss_pred             CCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhccCC
Q psy3253         207 WTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHDTD  244 (251)
Q Consensus       207 ~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~~~  244 (251)
                      .++++.+||.+||..||++|||++|+|+||||++....
T Consensus       273 ~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~~~~  310 (348)
T d2gfsa1         273 ANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDP  310 (348)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCT
T ss_pred             CCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCCCCC
Confidence            78999999999999999999999999999999976543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-43  Score=300.44  Aligned_cols=204  Identities=24%  Similarity=0.413  Sum_probs=154.3

Q ss_pred             CCCCCCCccceeeeeEee------CCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCC
Q psy3253           1 MQQCDSPYVVKYYGSYFK------NTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDI   74 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~------~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~di   74 (251)
                      |++++|||||+++++|..      ..++|+|||||.+ ++.+.+   ...+++..++.++.||+.||.|||++||+||||
T Consensus        70 l~~l~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~-~l~~~~---~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDl  145 (355)
T d2b1pa1          70 MKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDA-NLCQVI---QMELDHERMSYLLYQMLCGIKHLHSAGIIHRDL  145 (355)
T ss_dssp             HHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSE-EHHHHH---TSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCC
T ss_pred             HHhcCCCCeeEEEEEEecccccccCceeEEEEeccch-HHHHhh---hcCCCHHHHHHHHHHHHHHHHHhhhcccccccC
Confidence            357899999999999963      4689999999976 454444   357999999999999999999999999999998


Q ss_pred             CCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccccccccccccccccccccc
Q psy3253          75 KAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQ  154 (251)
Q Consensus        75 k~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  154 (251)
                      |                                 |+||+++.++.++++|||+++..... .......+|+.|+|||++.
T Consensus       146 K---------------------------------P~Nil~~~~~~~kl~df~~~~~~~~~-~~~~~~~~t~~y~aPE~l~  191 (355)
T d2b1pa1         146 K---------------------------------PSNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVIL  191 (355)
T ss_dssp             C---------------------------------GGGEEECTTCCEEECCCCC----------------CCTTCCHHHHT
T ss_pred             C---------------------------------ccccccccccceeeechhhhhccccc-cccccccccccccChhhhc
Confidence            8                                 88999999999999999998765543 3334456899999999999


Q ss_pred             cCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC----------------------CCCCCC--CC--------
Q psy3253         155 EIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP----------------------TKPPPS--FR--------  202 (251)
Q Consensus       155 ~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~----------------------~~~~~~--~~--------  202 (251)
                      +..+++++||||+||++|+|++|++||.+.+.......+.                      ......  ..        
T Consensus       192 ~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (355)
T d2b1pa1         192 GMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDS  271 (355)
T ss_dssp             TCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGG
T ss_pred             CCCCCCCcccccccchHHHHhhCCCCCCCCCHHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccccccccccccc
Confidence            9999999999999999999999999997654332221110                      000000  00        


Q ss_pred             -------CCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         203 -------EPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       203 -------~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                             .....++++.+||.+||.+||++|||++|+|+||||+...
T Consensus       272 ~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~  318 (355)
T d2b1pa1         272 LFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWY  318 (355)
T ss_dssp             GSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGC
T ss_pred             cccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCCC
Confidence                   0011356789999999999999999999999999998743

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-42  Score=290.26  Aligned_cols=195  Identities=25%  Similarity=0.452  Sum_probs=164.4

Q ss_pred             CCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhC-----------------CCCCHHHHHHHHHHHHHHHHHHHhC
Q psy3253           5 DSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRK-----------------KTLSEDEIATILCDTLKGLEYLHLR   67 (251)
Q Consensus         5 ~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~-----------------~~l~~~~~~~~~~~i~~~l~~LH~~   67 (251)
                      +|||||++++++.++...++|||||++|+|.++++...                 ..+++..++.++.||+.||+|||++
T Consensus        85 ~HpnIv~~~g~~~~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~  164 (311)
T d1t46a_          85 NHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK  164 (311)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEEEEeeCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            79999999999999999999999999999999997432                 2589999999999999999999999


Q ss_pred             CccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccc--cccccccccc
Q psy3253          68 RKIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTM--AKRNTVIGTP  145 (251)
Q Consensus        68 ~iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~  145 (251)
                      |++|||||                                 |+||+++.++.++++|||.++......  .......+|+
T Consensus       165 ~ivHrDLK---------------------------------p~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~  211 (311)
T d1t46a_         165 NCIHRDLA---------------------------------ARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPV  211 (311)
T ss_dssp             TCCCSCCS---------------------------------GGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECG
T ss_pred             Ceeecccc---------------------------------cccccccccCcccccccchheeccCCCcceEeeecccCh
Confidence            99999988                                 889999999999999999998664322  2234456899


Q ss_pred             ccccccccccCCCCcchhHHHHHHHHHHHHh-CCCCCCCCCcchhhhhcC-CCCCCCCCCCCCCCHHHHHHHHHhhhcCc
Q psy3253         146 FWMAPEVIQEIGYDCVADMWSLGITALEMAE-GKPPYGDIHPMRAIFMIP-TKPPPSFREPDVWTPEFIDFVSRCLVKNP  223 (251)
Q Consensus       146 ~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~-g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~l~~~p  223 (251)
                      .|+|||.+.+..++.++|||||||++|+|+| |.+||...........+. .+.  ....+..+++++.+||.+||+.||
T Consensus       212 ~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~l~~Li~~cl~~dP  289 (311)
T d1t46a_         212 KWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGF--RMLSPEHAPAEMYDIMKTCWDADP  289 (311)
T ss_dssp             GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTC--CCCCCTTSCHHHHHHHHHHTCSSG
T ss_pred             HHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCC--CCCCcccccHHHHHHHHHHcCCCh
Confidence            9999999999999999999999999999998 667776655544433222 222  223356689999999999999999


Q ss_pred             CccCCHHHHhc
Q psy3253         224 EERATASEMLN  234 (251)
Q Consensus       224 ~~Rps~~evl~  234 (251)
                      ++|||++|+++
T Consensus       290 ~~RPs~~~il~  300 (311)
T d1t46a_         290 LKRPTFKQIVQ  300 (311)
T ss_dssp             GGSCCHHHHHH
T ss_pred             hHCcCHHHHHH
Confidence            99999999985

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-41  Score=283.61  Aligned_cols=199  Identities=24%  Similarity=0.340  Sum_probs=152.0

Q ss_pred             CCCCCCCccceeeeeEeeCC----eEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh--------CC
Q psy3253           1 MQQCDSPYVVKYYGSYFKNT----DLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHL--------RR   68 (251)
Q Consensus         1 l~~l~hpniv~l~~~~~~~~----~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~--------~~   68 (251)
                      +++++|||||++++++.+..    .+|+|||||++|+|.++++.  ..+++..+..++.|++.||.|+|+        +|
T Consensus        51 ~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~--~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~  128 (303)
T d1vjya_          51 TVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNR--YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPA  128 (303)
T ss_dssp             STTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHH--CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCE
T ss_pred             HhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence            45789999999999997643    68999999999999999973  479999999999999999999996        59


Q ss_pred             ccccCCCCCCCCccccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCcccc----cccccccc
Q psy3253          69 KIHRDIKAGSGTLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMA----KRNTVIGT  144 (251)
Q Consensus        69 iiH~dik~~Ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~  144 (251)
                      |+|||||                                 |+||+++.++.+||+|||+++.......    ......||
T Consensus       129 IvHrDlK---------------------------------p~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt  175 (303)
T d1vjya_         129 IAHRDLK---------------------------------SKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGT  175 (303)
T ss_dssp             EECSCCC---------------------------------GGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSC
T ss_pred             eeccccC---------------------------------ccceEEcCCCCeEEEecCccccccCCCcceeccccceecc
Confidence            9999988                                 9999999999999999999976543221    22345689


Q ss_pred             cccccccccccCC------CCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhh---------------hcCC-CCCCCCC
Q psy3253         145 PFWMAPEVIQEIG------YDCVADMWSLGITALEMAEGKPPYGDIHPMRAIF---------------MIPT-KPPPSFR  202 (251)
Q Consensus       145 ~~y~aPE~~~~~~------~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~---------------~~~~-~~~~~~~  202 (251)
                      +.|+|||++.+..      ++.++|||||||++|+|+||.+||..........               .... ...+...
T Consensus       176 ~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  255 (303)
T d1vjya_         176 KRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIP  255 (303)
T ss_dssp             GGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCC
T ss_pred             cCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhccccCCCCC
Confidence            9999999986542      5678999999999999999988874322111110               0111 1111110


Q ss_pred             C---CCCCCHHHHHHHHHhhhcCcCccCCHHHHhc
Q psy3253         203 E---PDVWTPEFIDFVSRCLVKNPEERATASEMLN  234 (251)
Q Consensus       203 ~---~~~~~~~~~~li~~~l~~~p~~Rps~~evl~  234 (251)
                      .   .......+.+|+.+||+.||++|||++||++
T Consensus       256 ~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~  290 (303)
T d1vjya_         256 NRWQSCEALRVMAKIMRECWYANGAARLTALRIKK  290 (303)
T ss_dssp             GGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHH
T ss_pred             cccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHH
Confidence            0   0112245889999999999999999999986

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.5e-39  Score=269.18  Aligned_cols=205  Identities=18%  Similarity=0.245  Sum_probs=156.2

Q ss_pred             CCCCCCcc-ceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCC
Q psy3253           2 QQCDSPYV-VKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGT   80 (251)
Q Consensus         2 ~~l~hpni-v~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~   80 (251)
                      ++++|+|+ +.+.+++.++...++||||+ +++|.+.+......+++..++.++.|++.||+|||++||+|||||     
T Consensus        57 ~~l~~~~~i~~~~~~~~~~~~~~ivme~~-~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiK-----  130 (299)
T d1ckia_          57 KMMQGGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVK-----  130 (299)
T ss_dssp             HHSTTSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCC-----
T ss_pred             HHccCCCcccEEEEEEecCCEEEEEEEEc-CCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCC-----
Confidence            45666665 55566667888999999999 568888777677889999999999999999999999999999999     


Q ss_pred             ccccccccccccccccchhhhhhhhhcccCceecC---CCCCeEecccccccccCcccc-------cccccccccccccc
Q psy3253          81 LVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLN---TEGHAKLADFGVAGQLTDTMA-------KRNTVIGTPFWMAP  150 (251)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~---~~~~~kl~dfg~~~~~~~~~~-------~~~~~~~~~~y~aP  150 (251)
                                                  |+||+++   .+..++++|||+|+.......       ......||+.|+||
T Consensus       131 ----------------------------p~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP  182 (299)
T d1ckia_         131 ----------------------------PDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASI  182 (299)
T ss_dssp             ----------------------------GGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCH
T ss_pred             ----------------------------HhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCH
Confidence                                        5566543   345699999999986543221       22345689999999


Q ss_pred             cccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhhhhcC---CC--CCCCCCCCCCCCHHHHHHHHHhhhcCcCc
Q psy3253         151 EVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAIFMIP---TK--PPPSFREPDVWTPEFIDFVSRCLVKNPEE  225 (251)
Q Consensus       151 E~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~li~~~l~~~p~~  225 (251)
                      |++.+.+++.++|||||||++|+|++|..||.............   ..  ..+.......+|+++.+++.+||+.||++
T Consensus       183 E~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~  262 (299)
T d1ckia_         183 NTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDD  262 (299)
T ss_dssp             HHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCTTC
T ss_pred             HHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHHHHHHHHccCChhH
Confidence            99999999999999999999999999999997654332221110   00  00111124568999999999999999999


Q ss_pred             cCCHHH---HhcChhhhh
Q psy3253         226 RATASE---MLNHEFIQR  240 (251)
Q Consensus       226 Rps~~e---vl~hp~~~~  240 (251)
                      ||++++   +|+|+|.+.
T Consensus       263 RP~~~~i~~~l~~~~~~~  280 (299)
T d1ckia_         263 KPDYSYLRQLFRNLFHRQ  280 (299)
T ss_dssp             CCCHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHc
Confidence            999875   578887654

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=4.1e-39  Score=268.06  Aligned_cols=198  Identities=16%  Similarity=0.180  Sum_probs=158.4

Q ss_pred             CCC-CCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCc
Q psy3253           3 QCD-SPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTL   81 (251)
Q Consensus         3 ~l~-hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~   81 (251)
                      .+. |+|++.+++++.++...++||||+ +++|.++++..+..++..++..++.|++.||+|||++||+|||||      
T Consensus        56 ~l~~~~~i~~~~~~~~~~~~~~~vme~~-~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiK------  128 (293)
T d1csna_          56 LLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIK------  128 (293)
T ss_dssp             HTTTCTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCC------
T ss_pred             HhcCCCCCCEEEEEeecCCccEEEEEec-CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCceeccCC------
Confidence            454 489999999999999999999999 689999998777789999999999999999999999999999999      


Q ss_pred             cccccccccccccccchhhhhhhhhcccCceecCC-----CCCeEecccccccccCccc-------cccccccccccccc
Q psy3253          82 VYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNT-----EGHAKLADFGVAGQLTDTM-------AKRNTVIGTPFWMA  149 (251)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~-----~~~~kl~dfg~~~~~~~~~-------~~~~~~~~~~~y~a  149 (251)
                                                 |+||+++.     .+.++|+|||+|+......       .......||+.|+|
T Consensus       129 ---------------------------p~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~a  181 (293)
T d1csna_         129 ---------------------------PDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMS  181 (293)
T ss_dssp             ---------------------------GGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCC
T ss_pred             ---------------------------ccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcC
Confidence                                       66666643     4679999999998654321       12234568999999


Q ss_pred             ccccccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchhh---hhcCC--CCCCCCCCCCCCCHHHHHHHHHhhhcCcC
Q psy3253         150 PEVIQEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRAI---FMIPT--KPPPSFREPDVWTPEFIDFVSRCLVKNPE  224 (251)
Q Consensus       150 PE~~~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~li~~~l~~~p~  224 (251)
                      ||++.+..++.++||||+||++|+|++|..||.+.......   ..+..  ...+.......+|+++.+++..|+..+|+
T Consensus       182 PE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~~~~~~  261 (293)
T d1csna_         182 INTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFD  261 (293)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTT
T ss_pred             HHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHhcCCcc
Confidence            99999999999999999999999999999999754433221   11110  00011112356789999999999999999


Q ss_pred             ccCCHHHHhc
Q psy3253         225 ERATASEMLN  234 (251)
Q Consensus       225 ~Rps~~evl~  234 (251)
                      +||+.+.+.+
T Consensus       262 ~rP~y~~l~~  271 (293)
T d1csna_         262 ATPDYDYLQG  271 (293)
T ss_dssp             CCCCHHHHHH
T ss_pred             cCcCHHHHHH
Confidence            9999887754

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-36  Score=256.82  Aligned_cols=202  Identities=23%  Similarity=0.345  Sum_probs=146.8

Q ss_pred             CCCccceeeeeEee--CCeEEEEEEccCCCCHH-HHH-HHhCCCCCHHHHHHHHHHHHHHHHHHHh-CCccccCCCCCCC
Q psy3253           5 DSPYVVKYYGSYFK--NTDLWIVMEYCGAGSVS-DIM-RLRKKTLSEDEIATILCDTLKGLEYLHL-RRKIHRDIKAGSG   79 (251)
Q Consensus         5 ~hpniv~l~~~~~~--~~~~~lv~e~~~~gsL~-~~~-~~~~~~l~~~~~~~~~~~i~~~l~~LH~-~~iiH~dik~~Ni   79 (251)
                      .||||+++++++..  ....+++++++..+... ... ......+++..++.++.||+.||.|||+ .||+|||||    
T Consensus        78 ~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlK----  153 (362)
T d1q8ya_          78 GANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIK----  153 (362)
T ss_dssp             HHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCS----
T ss_pred             CcCceEEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCC----
Confidence            58999999998864  34567777776544332 322 2334688999999999999999999998 899999999    


Q ss_pred             CccccccccccccccccchhhhhhhhhcccCceecCCCC------CeEecccccccccCccccccccccccccccccccc
Q psy3253          80 TLVYDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEG------HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI  153 (251)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~------~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~  153 (251)
                                                   |+||+++.++      .++++|||.+.....   ......+|+.|+|||++
T Consensus       154 -----------------------------p~NIll~~~~~~~~~~~~kl~dfg~s~~~~~---~~~~~~gt~~y~aPE~~  201 (362)
T d1q8ya_         154 -----------------------------PENVLMEIVDSPENLIQIKIADLGNACWYDE---HYTNSIQTREYRSPEVL  201 (362)
T ss_dssp             -----------------------------GGGEEEEEEETTTTEEEEEECCCTTCEETTB---CCCSCCSCGGGCCHHHH
T ss_pred             -----------------------------hhHeeeeccCcccccceeeEeeccccccccc---ccccccccccccChhhc
Confidence                                         5555554433      389999999965442   33456789999999999


Q ss_pred             ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCcchh------h---hhcCC------------------------CCCC-
Q psy3253         154 QEIGYDCVADMWSLGITALEMAEGKPPYGDIHPMRA------I---FMIPT------------------------KPPP-  199 (251)
Q Consensus       154 ~~~~~~~~~DvwslG~~l~~l~~g~~p~~~~~~~~~------~---~~~~~------------------------~~~~-  199 (251)
                      ....++.++|+||+||++++|++|+.||........      .   .....                        .... 
T Consensus       202 ~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (362)
T d1q8ya_         202 LGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKL  281 (362)
T ss_dssp             HTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCC
T ss_pred             cccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccc
Confidence            999999999999999999999999999953321100      0   00000                        0000 


Q ss_pred             -----------CCCCCCCCCHHHHHHHHHhhhcCcCccCCHHHHhcChhhhhcc
Q psy3253         200 -----------SFREPDVWTPEFIDFVSRCLVKNPEERATASEMLNHEFIQRHD  242 (251)
Q Consensus       200 -----------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~hp~~~~~~  242 (251)
                                 ........++++.+||.+||.+||++|||++|+|+||||++..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~  335 (362)
T d1q8ya_         282 KFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTL  335 (362)
T ss_dssp             CBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCT
T ss_pred             cCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCC
Confidence                       0001122357799999999999999999999999999999653

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.59  E-value=5.3e-17  Score=125.32  Aligned_cols=113  Identities=18%  Similarity=0.137  Sum_probs=79.9

Q ss_pred             CCCCCccceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCcc
Q psy3253           3 QCDSPYVVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRRKIHRDIKAGSGTLV   82 (251)
Q Consensus         3 ~l~hpniv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~iiH~dik~~Ni~~~   82 (251)
                      ++.|++++..+++..    .+++|||+++..+.        .++...+..++.|++.||.|||++|++|||||       
T Consensus        70 ~l~~~~v~~~~~~~~----~~lvme~~~~~~~~--------~l~~~~~~~i~~ql~~~l~~lH~~giiHrDiK-------  130 (191)
T d1zara2          70 KLQGLAVPKVYAWEG----NAVLMELIDAKELY--------RVRVENPDEVLDMILEEVAKFYHRGIVHGDLS-------  130 (191)
T ss_dssp             HTTTSSSCCEEEEET----TEEEEECCCCEEGG--------GCCCSCHHHHHHHHHHHHHHHHHTTEECSCCS-------
T ss_pred             HccCCCcceEEEecC----CEEEEEeecccccc--------chhhHHHHHHHHHHHHHHHHHhhCCEEEccCC-------
Confidence            467888888776532    37999999876542        24555567899999999999999999999999       


Q ss_pred             ccccccccccccccchhhhhhhhhcccCceecCCCCCeEecccccccccCccccccccccccccccccc-----ccccCC
Q psy3253          83 YDRLDYCSIKCNVITNQIYKTLFRLKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPE-----VIQEIG  157 (251)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE-----~~~~~~  157 (251)
                                                |+||+++.++ ++|+|||.+.....+....        |....     .+....
T Consensus       131 --------------------------P~NILv~~~~-~~liDFG~a~~~~~~~~~~--------~l~rd~~~~~~~f~r~  175 (191)
T d1zara2         131 --------------------------QYNVLVSEEG-IWIIDFPQSVEVGEEGWRE--------ILERDVRNIITYFSRT  175 (191)
T ss_dssp             --------------------------TTSEEEETTE-EEECCCTTCEETTSTTHHH--------HHHHHHHHHHHHHHHH
T ss_pred             --------------------------hhheeeeCCC-EEEEECCCcccCCCCCcHH--------HHHHHHHHHHHHHcCC
Confidence                                      7777777554 8999999997654332211        11100     012356


Q ss_pred             CCcchhHHHHHH
Q psy3253         158 YDCVADMWSLGI  169 (251)
Q Consensus       158 ~~~~~DvwslG~  169 (251)
                      |+.++|+||+.-
T Consensus       176 y~~~~d~~s~~~  187 (191)
T d1zara2         176 YRTEKDINSAID  187 (191)
T ss_dssp             HCCCCCHHHHHH
T ss_pred             CCCcccHHHHHH
Confidence            788899999753

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.49  E-value=0.0015  Score=50.40  Aligned_cols=54  Identities=13%  Similarity=-0.035  Sum_probs=36.7

Q ss_pred             cceeeeeEeeCCeEEEEEEccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy3253           9 VVKYYGSYFKNTDLWIVMEYCGAGSVSDIMRLRKKTLSEDEIATILCDTLKGLEYLHLRR   68 (251)
Q Consensus         9 iv~l~~~~~~~~~~~lv~e~~~~gsL~~~~~~~~~~l~~~~~~~~~~~i~~~l~~LH~~~   68 (251)
                      +.+++.+..+++..++||++++|.++.+...      +......++.++...+..||+..
T Consensus        72 vP~vl~~~~~~~~~~lv~~~l~G~~~~~~~~------~~~~~~~~~~~l~~~l~~lH~~~  125 (263)
T d1j7la_          72 VPKVLHFERHDGWSNLLMSEADGVLCSEEYE------DEQSPEKIIELYAECIRLFHSID  125 (263)
T ss_dssp             CCCEEEEEEETTEEEEEEECCSSEEHHHHTT------TCSCHHHHHHHHHHHHHHHHTSC
T ss_pred             CCcEEEEEecCCceEEEEEeccccccccccc------ccccHHHHHHHHHHHHHHHhccC
Confidence            4566777778888999999999988865432      11223335666777778888654

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=95.20  E-value=0.014  Score=44.45  Aligned_cols=26  Identities=4%  Similarity=0.107  Sum_probs=20.8

Q ss_pred             cceeeeeEeeCCeEEEEEEccCCCCH
Q psy3253           9 VVKYYGSYFKNTDLWIVMEYCGAGSV   34 (251)
Q Consensus         9 iv~l~~~~~~~~~~~lv~e~~~~gsL   34 (251)
                      +.+++.+..+++..++||++++|-++
T Consensus        68 vP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          68 CAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             BCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             CCceeeecccccceEEEEEeeecccc
Confidence            55667777777889999999988665

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=91.81  E-value=0.11  Score=42.45  Aligned_cols=21  Identities=24%  Similarity=0.221  Sum_probs=16.0

Q ss_pred             cCceecCCCCCeEecccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAGQ  130 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~~  130 (251)
                      +.||+++.++ ++++||..+..
T Consensus       232 ~gNIlv~~~~-~~vID~E~a~~  252 (392)
T d2pula1         232 TGSIFASEHE-TKVIDPEFAFY  252 (392)
T ss_dssp             GGGEEECSSC-EEECCCTTCEE
T ss_pred             CCceeEcCCc-eEEechhhccc
Confidence            7788877655 79999988743

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.07  E-value=0.027  Score=44.45  Aligned_cols=21  Identities=24%  Similarity=0.289  Sum_probs=17.8

Q ss_pred             cCceecCCCCCeEeccccccc
Q psy3253         109 AGNILLNTEGHAKLADFGVAG  129 (251)
Q Consensus       109 ~~nil~~~~~~~kl~dfg~~~  129 (251)
                      ++|++++.+...-++||+.+.
T Consensus       192 ~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         192 QDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             GGGEEEETTEEEEECCCTTCE
T ss_pred             hhhhhcccccceeEecccccc
Confidence            889998887767899999885