Diaphorina citri psyllid: psy3393


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
MEMAEDGSLSEEIDNAAHARMSAISRSVVPALVPIPHDALDLGSNHSSGKDDDNESIKTEGLTVIVAPQDDSRDSEILSPGKISPSGISVSVASIMDSSEFRNLHAEPTYQTLTNVNGRLSPPGYSPSSSYATLTPLQPLPPISTMSDKFAYGHTGNVTGSFTVMQNNIGLGINSHYTYDKIQMSPPQHYSPNNGLSTIVITQENSPLSPQSTYSQNGLNSPQKSLSPNSYDSPYNQRDLVDRSVLGGGSQSPTLSPNEGSLHSSPTTLVTNFQGAATIPTMNGITTITPHTVVVSPQTSPQHSLISNQLQRSDSPGPPKIISQQTATLTLKTVTPTNAVVGAVSLGNSGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAGN
ccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcc
*************DNAAHARMSAISRSVVP*********************************************************************************************************************DKFAYGHTGNVTGSFTVMQNNIGLGINSHYTYDKIQ*************************************************************************************************************************************************************************EEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAG*
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MEMAEDGSLSEEIDNAAHARMSAISRSVVPALVPIPHDALDLGSNHSSGKDDDNESIKTEGLTVIVAPQDDSRDSEILSPGKISPSGISVSVASIMDSSEFRNLHAEPTYQTLTNVNGRLSPPGYSPSSSYATLTPLQPLPPISTMSDKFAYGHTGNVTGSFTVMQNNIGLGINSHYTYDKIQMSPPQHYSPNNGLSTIVITQENSPLSPQSTYSQNGLNSPQKSLSPNSYDSPYNQRDLVDRSVLGGGSQSPTLSPNEGSLHSSPTTLVTNFQGAATIPTMNGITTITPHTVVVSPQTSPQHSLISNQLQRSDSPGPPKIISQQTATLTLKTVTPTNAVVGAVSLGNSGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAGN

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Hepatocyte nuclear factor 6 Transcriptional activator. Binds the consensus sequence 5'-DHWATTGAYTWWD-3' on a variety of gene promoters such as those of HNF3B and TTR. Important for liver genes transcription. The affinity of HNF-6-alpha and HNF-6-beta for DNA differs depending on the target sequence.confidentP70512
Hepatocyte nuclear factor 6 Transcriptional activator. Binds the consensus sequence 5'-DHWATTGAYTWWD-3' on a variety of gene promoters such as those of HNF3B and TTR. Important for liver genes transcription. Stimulates the expression of Onecut3 in the developing endoderm.confidentO08755

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0003705 [MF]RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activityprobableGO:0003700, GO:0003674, GO:0001071, GO:0000981
GO:0031018 [BP]endocrine pancreas developmentprobableGO:0032502, GO:0048856, GO:0044707, GO:0032501, GO:0031016, GO:0044767, GO:0035270, GO:0048513, GO:0008150, GO:0048731, GO:0007275, GO:0044699
GO:0001077 [MF]RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcriptionprobableGO:0003700, GO:0001228, GO:0003674, GO:0001071, GO:0000982, GO:0000981

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1X2L, chain A
Confidence level:very confident
Coverage over the Query: 346-431
View the alignment between query and template
View the model in PyMOL