Psyllid ID: psy3393

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
MEMAEDGSLSEEIDNAAHARMSAISRSVVPALVPIPHDALDLGSNHSSGKDDDNESIKTEGLTVIVAPQDDSRDSEILSPGKISPSGISVSVASIMDSSEFRNLHAEPTYQTLTNVNGRLSPPGYSPSSSYATLTPLQPLPPISTMSDKFAYGHTGNVTGSFTVMQNNIGLGINSHYTYDKIQMSPPQHYSPNNGLSTIVITQENSPLSPQSTYSQNGLNSPQKSLSPNSYDSPYNQRDLVDRSVLGGGSQSPTLSPNEGSLHSSPTTLVTNFQGAATIPTMNGITTITPHTVVVSPQTSPQHSLISNQLQRSDSPGPPKIISQQTATLTLKTVTPTNAVVGAVSLGNSGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAGN
cccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcc
ccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEcccccccHHHccccccccccccEEccccccccHHcHHHccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHcccccHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHcc
memaedgslsEEIDNAAHARMSAISrsvvpalvpiphdaldlgsnhssgkdddnesiktegltvivapqddsrdseilspgkispsgiSVSVASImdssefrnlhaeptyqtltnvngrlsppgyspsssyatltplqplppistmsdkfayghtgnvtGSFTVMQNniglginshytydkiqmsppqhyspnnglSTIVItqensplspqstysqnglnspqkslspnsydspynqrdlvdrsvlgggsqsptlspnegslhsspttlvtnfqgaatiptmngittitphtvvvspqtspqhslisnqlqrsdspgppkiisqQTATLtlktvtptnAVVGAVslgnsgeleeiNTKELAQRISAELKRYSIPQAIFAQRVLCRSqgtlsdllrnpkpwsklksGRETFRRMWKWLQEPEFQRMSALRLAGN
memaedgsLSEEIDNAAHARMSAISRSVVPALVPIPHDALDLGSNHSSGKDDDNESIKTEGLTvivapqddsrdseilspgkispsgiSVSVASIMDSSEFRNLHAEPTYQTLTNVNGRLSPPGYSPSSSYATLTPLQPLPPISTMSDKFAYGHTGNVTGSFTVMQNNIGLGINSHYTYDKIQMSPPQHYSPNNGLSTIVITQENSPLSPQSTYSQNGLNSPQKSLSPNSYDSPYNQRDLVDRSVLGGGSQSPTLSPNEGSLHSSPTTLVTNFQGAATIPTMNGITTITPHTVVVSPQTSPQHSLISNQLQRSDSPGPPKIISQQTATLTLKTVTPTNAVVGAVSlgnsgeleeiNTKELAQRISAELKRYSIPQAIFAQRVLCRSQGtlsdllrnpkpwsklksgrETFRRMWKwlqepefqrmsalrlagn
MEMAEDGSLSEEIDNAAHARMSAISRSVVPALVPIPHDALDLGSNHSSGKDDDNESIKTEGLTVIVAPQDDSRDSEILSPGKISPSGISVSVASIMDSSEFRNLHAEPTYQTLTNVNGRLsppgyspsssyATLTPLQPLPPISTMSDKFAYGHTGNVTGSFTVMQNNIGLGINSHYTYDKIQMSPPQHYSPNNGLSTIVITQENSPLSPQSTYSQNGLNSPQKSLSPNSYDSPYNQRDLVDRSVLGGGSQSPTLSPNEGSLHSSPTTLVTNFQGAATIPTMNGITTITPHTVVVSPQTSPQHSLISNQLQRSDSPGPPKIISQQtatltlktvtptNAVVGAVSLGNSGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAGN
***************************************************************************************************************************************************DKFAYGHTGNVTGSFTVMQNNIGLGINSHYTYDKIQ*************************************************************************************LVTNFQGAATIPTMNGITTITPHTVVV*******************************ATLTLKTVTPTNAVVGAVSLGNSGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRN***WS*L**GRETFRRMWKWLQ***************
*************DNAAHARMSAISRSVVP***********************************************************************************************************************************************************************************************************************************************************************************************************************************EINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAG*
**********EEIDNAAHARMSAISRSVVPALVPIPHDALDLGS***********SIKTEGLTVIVAPQDDSRDSEILSPGKISPSGISVSVASIMDSSEFRNLHAEPTYQTLTNVNGRLSPPGYSPSSSYATLTPLQPLPPISTMSDKFAYGHTGNVTGSFTVMQNNIGLGINSHYTYDKIQMSPPQHYSPNNGLSTIVITQEN*************************YDSPYNQRDLVDRSVLGGG****************PTTLVTNFQGAATIPTMNGITTITPHTVV**********************GPPKIISQQTATLTLKTVTPTNAVVGAVSLGNSGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAGN
*****************HARMSAISRSVVPALVPIPHD*L*******************EGLTVIVAPQD*****************I*V****IMDSSEFRNLHAEPTYQTLTNVNGRLSPPGYSPSSSYATLTPLQPLPPISTMSDKFAYGHTGNVTGSFTVMQNNIGLGINSHYTYDKIQMSPPQHYSPNNGLSTIVITQENSPLSPQSTYSQNGLNSPQKSLSPNSY*************************************************************************************************************************EEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAG*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEMAEDGSLSEEIDNAAHARMSAISRSVVPALVPIPHDALDLGSNHSSGKDDDNESIKTEGLTVIVAPQDDSRDSEILSPGKISPSGISVSVASIMDSSEFRNLHAEPTYQTLTNVNGRLSPPGYSPSSSYATLTPLQPLPPISTMSDKFAYGHTGNVTGSFTVMQNNIGLGINSHYTYDKIQMSPPQHYSPNNGLSTIVITQENSPLSPQSTYSQNGLNSPQKSLSPNSYDSPYNQRDLVDRSVLGGGSQSPTLSPNEGSLHSSPTTLVTNFQGAATIPTMNGITTITPHTVVVSPQTSPQHSLISNQLQRSDSPGPPKIISQQTATLTLKTVTPTNAVVGAVSLGNSGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAGN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query433 2.2.26 [Sep-21-2011]
O08755465 Hepatocyte nuclear factor yes N/A 0.655 0.610 0.430 3e-54
P70512465 Hepatocyte nuclear factor yes N/A 0.655 0.610 0.430 3e-54
Q9UBC0465 Hepatocyte nuclear factor yes N/A 0.618 0.576 0.438 6e-51
Q9NJB5 1081 Homeobox protein onecut O yes N/A 0.318 0.127 0.645 5e-46
Q6XBJ3505 One cut domain family mem no N/A 0.200 0.172 0.919 3e-43
O95948504 One cut domain family mem no N/A 0.200 0.172 0.919 3e-43
O60422494 One cut domain family mem no N/A 0.182 0.159 0.962 5e-41
Q8K557490 One cut domain family mem no N/A 0.184 0.163 0.95 6e-41
Q19720 641 Homeobox protein ceh-38 O no N/A 0.175 0.118 0.684 3e-27
Q22811 495 Homeobox protein ceh-21 O no N/A 0.173 0.151 0.552 2e-17
>sp|O08755|HNF6_MOUSE Hepatocyte nuclear factor 6 OS=Mus musculus GN=Onecut1 PE=1 SV=1 Back     alignment and function desciption
 Score =  213 bits (542), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 162/376 (43%), Positives = 205/376 (54%), Gaps = 92/376 (24%)

Query: 89  SVSVASIMDS----SEFRNLH-------AEPTYQTLTNVNGRLSPPGYSPSSSYATLTPL 137
           S+ +AS++D     S++ + H       A P + T+T      +PPG S  ++Y TLTPL
Sbjct: 52  SMGMASLLDGGSGGSDYHHHHRAPEHSLAGPLHPTMTMACE--TPPGMSMPTTYTTLTPL 109

Query: 138 QPLPPISTMSDKFAYGH---------------TGNVTGSFTVMQNNIGLG-INSHYT-YD 180
           QPLPPIST+SDKF + H                GNV+GSFT+M++  GL  +N+ YT Y 
Sbjct: 110 QPLPPISTVSDKFPHHHHHHHHHHHPHHHQRLAGNVSGSFTLMRDERGLASMNNLYTPYH 169

Query: 181 KIQMSPPQHYSP--NNGLSTIVITQENSPLSPQSTYSQNGLNSP-QKSLSPNSYDSPYNQ 237
           K      Q  SP   +GL +I  +Q+  P      Y+  G   P  K L+PN +++ +  
Sbjct: 170 KDVAGMGQSLSPLSGSGLGSIHNSQQGLP-----HYAHPGAAMPTDKMLTPNGFEAHH-- 222

Query: 238 RDLVDRSVLGGGSQSPTLSPNEGSLHSSPTTLVTNFQGAATIPTMNGITTITPHTVVVSP 297
                          P +    G  H +PT+       A  +P +NG+    PH      
Sbjct: 223 ---------------PAMLGRHGEQHLTPTS-------AGMVP-INGLPPHHPHA----- 254

Query: 298 QTSPQHSLISNQLQRSDSPGPPKIISQQTATLTLKTVTPTNAVVGA-VSLG-NSGELEEI 355
                                  + +Q    L      P  +V GA VS G NSG++EEI
Sbjct: 255 ----------------------HLNAQGHGQLLGTAREPNPSVTGAQVSNGSNSGQMEEI 292

Query: 356 NTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWK 415
           NTKE+AQRI+ ELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWK
Sbjct: 293 NTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWK 352

Query: 416 WLQEPEFQRMSALRLA 431
           WLQEPEFQRMSALRLA
Sbjct: 353 WLQEPEFQRMSALRLA 368
Transcriptional activator. Binds the consensus sequence 5'-DHWATTGAYTWWD-3' on a variety of gene promoters such as those of HNF3B and TTR. Important for liver genes transcription. Stimulates the expression of Onecut3 in the developing endoderm.
Mus musculus (taxid: 10090)
>sp|P70512|HNF6_RAT Hepatocyte nuclear factor 6 OS=Rattus norvegicus GN=Onecut1 PE=1 SV=1 Back     alignment and function description
>sp|Q9UBC0|HNF6_HUMAN Hepatocyte nuclear factor 6 OS=Homo sapiens GN=ONECUT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9NJB5|ONEC_DROME Homeobox protein onecut OS=Drosophila melanogaster GN=onecut PE=2 SV=2 Back     alignment and function description
>sp|Q6XBJ3|ONEC2_MOUSE One cut domain family member 2 OS=Mus musculus GN=Onecut2 PE=2 SV=2 Back     alignment and function description
>sp|O95948|ONEC2_HUMAN One cut domain family member 2 OS=Homo sapiens GN=ONECUT2 PE=2 SV=2 Back     alignment and function description
>sp|O60422|ONEC3_HUMAN One cut domain family member 3 OS=Homo sapiens GN=ONECUT3 PE=2 SV=2 Back     alignment and function description
>sp|Q8K557|ONEC3_MOUSE One cut domain family member 3 OS=Mus musculus GN=Onecut3 PE=1 SV=2 Back     alignment and function description
>sp|Q19720|HM38_CAEEL Homeobox protein ceh-38 OS=Caenorhabditis elegans GN=ceh-38 PE=2 SV=2 Back     alignment and function description
>sp|Q22811|HM21_CAEEL Homeobox protein ceh-21 OS=Caenorhabditis elegans GN=ceh-21 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
270014519 565 hypothetical protein TcasGA2_TC004129 [T 0.806 0.617 0.597 1e-107
189233657 1151 PREDICTED: similar to GA15133-PA [Tribol 0.806 0.303 0.597 1e-106
340722035 668 PREDICTED: one cut domain family member 0.704 0.456 0.572 6e-98
328787290 672 PREDICTED: one cut domain family member 0.704 0.453 0.565 1e-96
380016009510 PREDICTED: one cut domain family member 0.704 0.598 0.565 2e-96
328710625 811 PREDICTED: hypothetical protein LOC10015 0.732 0.390 0.561 2e-95
328710627 821 PREDICTED: hypothetical protein LOC10015 0.732 0.386 0.561 2e-95
242017908483 conserved hypothetical protein [Pediculu 0.704 0.631 0.551 7e-92
405959224486 One cut domain family member 2 [Crassost 0.655 0.584 0.461 2e-62
301618950439 PREDICTED: hepatocyte nuclear factor 6-l 0.646 0.637 0.448 2e-59
>gi|270014519|gb|EFA10967.1| hypothetical protein TcasGA2_TC004129 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 249/417 (59%), Positives = 287/417 (68%), Gaps = 68/417 (16%)

Query: 58  KTEG-LTVIVAPQDDSRDSEILSPGKISPSGISVSVASIMDSSEFRNLHAEPTYQTLTNV 116
           + EG L+VIV PQDDSRDSE+LSPGK+SP+  SVSVA+++D+++FR +  EPTYQTLT+V
Sbjct: 56  EAEGPLSVIVQPQDDSRDSELLSPGKLSPT--SVSVANMIDAADFR-MQPEPTYQTLTSV 112

Query: 117 NGRLSPPGYSPSSSYATLTPLQPLPPISTMSDKFAYGHTGNVTGSFTVMQNN---IGLG- 172
           NGRLSPPGYSPSSSYATLTPLQPLPPISTMSDKFAYGH GNVTGSFTVMQNN   IGLG 
Sbjct: 113 NGRLSPPGYSPSSSYATLTPLQPLPPISTMSDKFAYGHAGNVTGSFTVMQNNSLGIGLGL 172

Query: 173 ---INSHYTYDKIQMSPPQHYS-PNNGLSTIVITQENSPLSPQSTYSQNGLNSPQKSLSP 228
              +N+ Y+   + M+PP +YS P  GL      Q+ SP+SPQS YSQNGL SPQKS+SP
Sbjct: 173 GVNVNAAYSMPTMGMTPPHNYSSPGMGLQ-----QQPSPISPQSAYSQNGLPSPQKSMSP 227

Query: 229 NSYDSPY--NQRDLVDRSVLGGGSQSPTLSPNEGSLHSSPTTLVTNFQGAATIPTMNGIT 286
             YDSPY   QRDLV RS+     QSP LSP   SL+S   TLV  F G+    T+NG+ 
Sbjct: 228 PGYDSPYGAQQRDLVARSL-----QSPQLSPPSASLNSPDGTLVAGFGGS----TLNGLG 278

Query: 287 TITPHTVVVSPQTSPQHSLISNQLQRSDSPGPPKI------------------------- 321
            +  H   +    +PQ        QR  SP PP +                         
Sbjct: 279 -LQHHPPTLVQIAAPQ--------QRDCSPSPPVLSLQPQQQTQQQQQQPQPQQQQQQQQ 329

Query: 322 -----ISQQTATLTLKTVTPTNAVVGAVSL-GNSGELEEINTKELAQRISAELKRYSIPQ 375
                  QQ        ++  NA  GA+S+   + ++EEINTKELAQRISAELKRYSIPQ
Sbjct: 330 QPQQQQQQQPQPAVAMQISSKNASSGALSVPAIAADVEEINTKELAQRISAELKRYSIPQ 389

Query: 376 AIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAG 432
           AIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAG
Sbjct: 390 AIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAG 446

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189233657|ref|XP_001807372.1| PREDICTED: similar to GA15133-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|340722035|ref|XP_003399417.1| PREDICTED: one cut domain family member 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328787290|ref|XP_624996.3| PREDICTED: one cut domain family member 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|380016009|ref|XP_003691986.1| PREDICTED: one cut domain family member 2-like [Apis florea] Back     alignment and taxonomy information
>gi|328710625|ref|XP_001946230.2| PREDICTED: hypothetical protein LOC100158731 isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328710627|ref|XP_003244317.1| PREDICTED: hypothetical protein LOC100158731 isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242017908|ref|XP_002429426.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514352|gb|EEB16688.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|405959224|gb|EKC25281.1| One cut domain family member 2 [Crassostrea gigas] Back     alignment and taxonomy information
>gi|301618950|ref|XP_002938867.1| PREDICTED: hepatocyte nuclear factor 6-like [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query433
ZFIN|ZDB-GENE-050208-744451 onecut3 "one cut homeobox 3" [ 0.196 0.188 0.929 6.2e-55
FB|FBgn0028996 1081 onecut "onecut" [Drosophila me 0.316 0.126 0.642 2.4e-54
RGD|2811465 Onecut1 "one cut homeobox 1" [ 0.459 0.427 0.516 1.8e-52
UNIPROTKB|P70512465 Onecut1 "Hepatocyte nuclear fa 0.459 0.427 0.516 1.8e-52
UNIPROTKB|J3KR63485 ONECUT2 "One cut domain family 0.198 0.177 0.930 1.6e-51
UNIPROTKB|O95948504 ONECUT2 "One cut domain family 0.198 0.170 0.930 1.6e-51
UNIPROTKB|F1S1X5352 ONECUT2 "Uncharacterized prote 0.200 0.247 0.931 2e-51
MGI|MGI:1891408505 Onecut2 "one cut domain, famil 0.198 0.170 0.930 1.8e-50
RGD|1564677431 Onecut2 "one cut homeobox 2" [ 0.198 0.199 0.930 1.8e-50
MGI|MGI:1891409490 Onecut3 "one cut domain, famil 0.207 0.183 0.866 3.3e-47
ZFIN|ZDB-GENE-050208-744 onecut3 "one cut homeobox 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 419 (152.6 bits), Expect = 6.2e-55, Sum P(3) = 6.2e-55
 Identities = 79/85 (92%), Positives = 84/85 (98%)

Query:   347 GNSGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSG 406
             G SG++EEINTKE+AQRI+AELKRYSIPQAIFAQR+LCRSQGTLSDLLRNPKPWSKLKSG
Sbjct:   266 GGSGQVEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLLRNPKPWSKLKSG 325

Query:   407 RETFRRMWKWLQEPEFQRMSALRLA 431
             RETFRRMWKWLQEPEFQRMSALRLA
Sbjct:   326 RETFRRMWKWLQEPEFQRMSALRLA 350
GO:0003677 "DNA binding" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA
GO:0001889 "liver development" evidence=IMP
GO:0005634 "nucleus" evidence=IEA
FB|FBgn0028996 onecut "onecut" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|2811 Onecut1 "one cut homeobox 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P70512 Onecut1 "Hepatocyte nuclear factor 6" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J3KR63 ONECUT2 "One cut domain family member 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O95948 ONECUT2 "One cut domain family member 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1X5 ONECUT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1891408 Onecut2 "one cut domain, family member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1564677 Onecut2 "one cut homeobox 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1891409 Onecut3 "one cut domain, family member 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O08755HNF6_MOUSENo assigned EC number0.43080.65580.6107yesN/A
P70512HNF6_RATNo assigned EC number0.43080.65580.6107yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
pfam0237687 pfam02376, CUT, CUT domain 4e-37
>gnl|CDD|202226 pfam02376, CUT, CUT domain Back     alignment and domain information 
 Score =  130 bits (328), Expect = 4e-37
 Identities = 46/82 (56%), Positives = 57/82 (69%), Gaps = 1/82 (1%)

Query: 350 GELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLK-SGRE 408
           G  EE++T E+A+RI  ELKR +I QA+FA+ VL RSQG+LSDLLR PKPW+KL   GRE
Sbjct: 4   GMSEELDTAEIARRIKEELKRANISQALFAEVVLGRSQGSLSDLLRRPKPWNKLLLKGRE 63

Query: 409 TFRRMWKWLQEPEFQRMSALRL 430
            FRRM  +L  PE  R    + 
Sbjct: 64  PFRRMQNFLSLPEAVRDLIYQQ 85

The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein . Length = 87

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 433
KOG2252|consensus 558 100.0
PF0237687 CUT: CUT domain; InterPro: IPR003350 A class, also 99.97
KOG3755|consensus 769 95.98
PF04814180 HNF-1_N: Hepatocyte nuclear factor 1 (HNF-1), N te 92.75
PRK0972688 antitoxin HipB; Provisional 92.65
smart0053056 HTH_XRE Helix-turn-helix XRE-family like proteins. 91.89
PF1344363 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3 90.72
TIGR0307058 couple_hipB transcriptional regulator, y4mF family 90.27
PRK09706135 transcriptional repressor DicA; Reviewed 89.73
PF0138155 HTH_3: Helix-turn-helix; InterPro: IPR001387 This 89.02
PF1284464 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_ 88.87
cd0009358 HTH_XRE Helix-turn-helix XRE-family like proteins. 87.65
PHA0197667 helix-turn-helix protein 87.33
PF1356064 HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_ 85.95
smart0035275 POU Found in Pit-Oct-Unc transcription factors. 84.75
PF1374480 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_ 83.43
TIGR0260778 antidote_HigA addiction module antidote protein, H 83.23
PRK09943 185 DNA-binding transcriptional repressor PuuR; Provis 81.87
PRK13890120 conjugal transfer protein TrbA; Provisional 80.91
>KOG2252|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.8e-45  Score=375.00  Aligned_cols=304  Identities=42%  Similarity=0.498  Sum_probs=211.8

Q ss_pred             cCcCCCCCCCCccccchhhcccC----cccc-----cC--CCCCccccccccCCCCCCCCCCCCCCccccCCCCCCCCCc
Q psy3393          76 EILSPGKISPSGISVSVASIMDS----SEFR-----NL--HAEPTYQTLTNVNGRLSPPGYSPSSSYATLTPLQPLPPIS  144 (433)
Q Consensus        76 ~~~~~~~~~~~~~~~~mas~ld~----~d~r-----~~--~~~~~~~tlts~~~~~sppg~s~sssYtTLTPLQpLPPIS  144 (433)
                      -++++...+-..+...||..++.    +++.     +.  .+.|+++++.+.|+. +++|++.++.|++++|+++.||||
T Consensus        62 ~~~~~~~~~~~~~~~~m~~~~~~~~~gs~~~~~~~~p~~s~a~p~~~~~~s~~e~-~~~~~~~~~l~~s~~~~~~~p~~s  140 (558)
T KOG2252|consen   62 ALSSAEPRSVWPADQNMAHPLDSGLLGSSVPSEFKEPELSLASPLVPTIKSSCES-SSSGSGASSLSASLAPHQPSPPIS  140 (558)
T ss_pred             ccCccccccccchhhcccccccccccCCCccccccCcccccccCcccccccCcCC-CCcccccccccccccccCCCCCCc
Confidence            44555555555677888988884    4554     11  234899999887775 488999999999999999999999


Q ss_pred             cccccccCCC----------------CCCcccc-eeeeecccccc-cCCCCC-cCcc-CCCCCCCCCC----CCCCCccc
Q psy3393         145 TMSDKFAYGH----------------TGNVTGS-FTVMQNNIGLG-INSHYT-YDKI-QMSPPQHYSP----NNGLSTIV  200 (433)
Q Consensus       145 TvSDKF~~~H----------------~gnvsGs-Ftlmr~~~gL~-~n~~Y~-y~k~-~m~~p~~~sp----~~gl~~~~  200 (433)
                      +++|+|+++|                .|+|.|+ ||+|++.+|+. ++++|. |..+ .+.+  .++|    .+|++.++
T Consensus       141 ~ts~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~~~~~g~tt~~~ly~~~~~~~~~~~--~~ap~~~~~n~i~q~~  218 (558)
T KOG2252|consen  141 TTSDYGTSPHRVHSPRGESTSHNQRAAGYVSGPSFTLMLPENGLTTENNLYSRSPDTGSQSQ--SLAPNAVTTNGISQLD  218 (558)
T ss_pred             cccccccCCCcccccccccCCcCccccccccCCcccccccCCCCCcCccccccccccccccc--cccccccccccccccc
Confidence            9999998531                4889988 99999999998 999997 6433 3443  2442    36888888


Q ss_pred             ccccCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCcCCCCCCcccccccCCCCcc
Q psy3393         201 ITQENSPLSPQSTYSQNGL--NSPQKSLSPNSYDSPYNQRDLVDRSVLGGGSQSPTLSPNEGSLHSSPTTLVTNFQGAAT  278 (433)
Q Consensus       201 ~~q~~sp~s~~~~y~~~g~--~~~~k~~~~~~~e~~~~~~~~~~r~~~~~~~hsp~ls~~~~~~h~~~~~l~~~~~~~~~  278 (433)
                      +.++..+     .|...+.  --.+|+.+|..|..+...  +.-+               ....|+...   .+-..+++
T Consensus       219 ~~~~s~~-----s~~~pla~~~~t~k~~sP~~f~~~~~~--~~~~---------------~~~q~~~~~---~~~~~a~~  273 (558)
T KOG2252|consen  219 NGELSQG-----SVSDPLARAILTQKGRSPFIFLDDVAA--YQVP---------------VPAQHSITI---CGSPQAVT  273 (558)
T ss_pred             chhhccC-----CCCchhhhhhccccccCCccccccccc--cccC---------------Ccccccccc---CCCccccc
Confidence            8775433     3333332  123466677667665431  1111               112233211   11223668


Q ss_pred             ccCCCCccccCCCccccCCCCCCCccccccccccCCCCCCCccchhhhhhccccccccccCCCCcccc--CCCCCCCccC
Q psy3393         279 IPTMNGITTITPHTVVVSPQTSPQHSLISNQLQRSDSPGPPKIISQQTATLTLKTVTPTNAVVGAVSL--GNSGELEEIN  356 (433)
Q Consensus       279 ~~~lNg~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~s~~~~~~--~~i~d~~~ID  356 (433)
                      ++++|+..+.+++.+..+..+.+   +...                 .++..      ..+++++..+  .++++.++||
T Consensus       274 ~~~~~s~~~~~ps~~~~s~~~e~---~s~~-----------------~~p~~------~~sss~~~~~~~~~~~d~eeld  327 (558)
T KOG2252|consen  274 PSTPNSLEPSKPSGHKSSVKQEA---LSEI-----------------DQPKG------ISSSSDSHSNRKEESGDDEELD  327 (558)
T ss_pred             cCCCCCccccCCCCccccccccc---cccc-----------------cCCCC------CCccccccccchhhcCCcceec
Confidence            88899886444432211111111   0000                 00000      0111122222  3588999999


Q ss_pred             HHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHHHH-HHHHHHhcC
Q psy3393         357 TKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQR-MSALRLAGN  433 (433)
Q Consensus       357 TKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEdeR-meILRl~~c  433 (433)
                      ||+||+||+.+||+|+|+|++||++|||||||||||||||||||+|||+|||+|+||||||+.|+++| |.+||+++|
T Consensus       328 Tkeia~rI~~eLk~~sIpQaiFAervLcRSQGTLSDLLrnPKPW~klKsGRetFrRM~~WL~eP~~~r~m~~L~~~a~  405 (558)
T KOG2252|consen  328 TKEIAQRIKAELKRYSIPQAIFAERVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMANWLEEPEFQRLMSALRKKAC  405 (558)
T ss_pred             HHHHHHHHHHHHhhcCCcHHHHHHHHhhcccchHHHHhhCCCchhhhccccHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 999999987

>PF02376 CUT: CUT domain; InterPro: IPR003350 A class, also called ONECUT, of homeodomain proteins Back     alignment and domain information
>KOG3755|consensus Back     alignment and domain information
>PF04814 HNF-1_N: Hepatocyte nuclear factor 1 (HNF-1), N terminus; InterPro: IPR006899 This domain consists of the N terminus of homeobox-containing transcription factor HNF-1 Back     alignment and domain information
>PRK09726 antitoxin HipB; Provisional Back     alignment and domain information
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins Back     alignment and domain information
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A Back     alignment and domain information
>TIGR03070 couple_hipB transcriptional regulator, y4mF family Back     alignment and domain information
>PRK09706 transcriptional repressor DicA; Reviewed Back     alignment and domain information
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould) Back     alignment and domain information
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B Back     alignment and domain information
>cd00093 HTH_XRE Helix-turn-helix XRE-family like proteins Back     alignment and domain information
>PHA01976 helix-turn-helix protein Back     alignment and domain information
>PF13560 HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_A 3PXP_A 2OFY_A Back     alignment and domain information
>smart00352 POU Found in Pit-Oct-Unc transcription factors Back     alignment and domain information
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A Back     alignment and domain information
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family Back     alignment and domain information
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional Back     alignment and domain information
>PRK13890 conjugal transfer protein TrbA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
2d5v_A164 Crystal Structure Of Hnf-6alpha Dna-Binding Domain 1e-41
1s7e_A147 Solution Structure Of Hnf-6 Length = 147 8e-41
1wh6_A101 Solution Structure Of The Second Cut Domain Of Huma 1e-11
1wh8_A111 Solution Structure Of The Third Cut Domain Of Human 1e-08
1x2l_A101 Solution Structure Of The Cut Domain Of Human Homeo 5e-08
1wiz_A101 Solution Structure Of The First Cut Domain Of Kiaa1 2e-05
1yse_A141 Solution Structure Of The Mar-Binding Domain Of Sat 9e-05
>pdb|2D5V|A Chain A, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In Complex With The Ttr Promoter Length = 164 Back     alignment and structure 
Iteration: 1

 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/81 (93%), Positives = 79/81 (97%)
Query: 352 LEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFR 411
           +EEINTKE+AQRI+ ELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFR
Sbjct: 1   MEEINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFR 60
Query: 412 RMWKWLQEPEFQRMSALRLAG 432
           RMWKWLQEPEFQRMSALRLA 
Sbjct: 61  RMWKWLQEPEFQRMSALRLAA 81
>pdb|1S7E|A Chain A, Solution Structure Of Hnf-6 Length = 147 Back     alignment and structure
>pdb|1WH6|A Chain A, Solution Structure Of The Second Cut Domain Of Human Homeobox Protein Cux-2 Length = 101 Back     alignment and structure
>pdb|1WH8|A Chain A, Solution Structure Of The Third Cut Domain Of Human Homeobox Protein Cux-2 Length = 111 Back     alignment and structure
>pdb|1X2L|A Chain A, Solution Structure Of The Cut Domain Of Human Homeobox Protein Cux-2 (Cut-Like 2) Length = 101 Back     alignment and structure
>pdb|1WIZ|A Chain A, Solution Structure Of The First Cut Domain Of Kiaa1034 Protein Length = 101 Back     alignment and structure
>pdb|1YSE|A Chain A, Solution Structure Of The Mar-Binding Domain Of Satb1 Length = 141 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query433
2o4a_A93 DNA-binding protein SATB1; protein-DNA complex, tr 2e-37
1wiz_A101 DNA-binding protein SATB2; helix bundle, KIAA1034 2e-33
1x2l_A101 CUT-like 2, homeobox protein CUX-2; CUT domain, hu 6e-32
1wh6_A101 CUT-like 2, homeobox protein CUX-2; CUT domain, st 7e-32
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 6e-29
1wh8_A111 CUT-like 2, homeobox protein CUX-2; CUT domain, st 1e-28
1yse_A141 DNA-binding protein SATB1; all helical, DNA-bindin 3e-27
2csf_A101 DNA-binding protein SATB2; CUT domain, special AT- 7e-26
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 8e-05
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A* Length = 93 Back     alignment and structure
 Score =  131 bits (329), Expect = 2e-37
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 350 GELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPK-PWSKLKSGRE 408
             +    + E+ Q +  ELKR  I QA+FA+    R+QG LS++LR  + P +  +S   
Sbjct: 2   SHMNTEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLV 61

Query: 409 TFRRMWKWLQEPEFQRMSALRLAGN 433
             R M  +LQ PE +R    +    
Sbjct: 62  NLRAMQNFLQLPEAERDRIYQDERE 86
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7 Length = 101 Back     alignment and structure
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7 Length = 101 Back     alignment and structure
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7 Length = 101 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 Back     alignment and structure
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7 Length = 111 Back     alignment and structure
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7 Length = 141 Back     alignment and structure
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7 Length = 101 Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Length = 194 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
1x2l_A101 CUT-like 2, homeobox protein CUX-2; CUT domain, hu 100.0
1wiz_A101 DNA-binding protein SATB2; helix bundle, KIAA1034 99.97
2o4a_A93 DNA-binding protein SATB1; protein-DNA complex, tr 99.97
1wh6_A101 CUT-like 2, homeobox protein CUX-2; CUT domain, st 99.97
1wh8_A111 CUT-like 2, homeobox protein CUX-2; CUT domain, st 99.96
1yse_A141 DNA-binding protein SATB1; all helical, DNA-bindin 99.96
2csf_A101 DNA-binding protein SATB2; CUT domain, special AT- 99.92
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 99.91
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 95.27
1r69_A69 Repressor protein CI; gene regulating protein; 2.0 95.11
2b5a_A77 C.BCLI; helix-turn-helix motif, gene regulation; 1 95.06
3s8q_A82 R-M controller protein; protein-DNA complex, helix 94.92
2h8r_A 221 Hepatocyte nuclear factor 1-beta; trasncription fa 94.89
2r1j_L68 Repressor protein C2; protein-DNA complex, helix-t 94.47
2wiu_B88 HTH-type transcriptional regulator HIPB; transfera 94.41
1adr_A76 P22 C2 repressor; transcription regulation; NMR {E 94.37
3b7h_A78 Prophage LP1 protein 11; structural genomics, PSI2 94.35
2kpj_A94 SOS-response transcriptional repressor, LEXA; NESG 94.03
3g5g_A99 Regulatory protein; transcriptional regulator, hel 93.78
1zug_A71 Phage 434 CRO protein; gene regulating protein, tr 93.74
3f6w_A83 XRE-family like protein; helix-turn-helix, DNA bin 93.61
2k9q_A77 Uncharacterized protein; all helix, helix-turn-hel 93.48
1y7y_A74 C.AHDI; helix-turn-helix, DNA-binding protein, tra 93.45
2a6c_A83 Helix-turn-helix motif; putative transcriptional r 93.26
3kz3_A80 Repressor protein CI; five helix bundle, DNA-bindi 92.87
3vk0_A114 NHTF, transcriptional regulator; HTH motif, XRE tr 92.82
2ewt_A71 BLDD, putative DNA-binding protein; the DNA-bindin 92.65
3eus_A86 DNA-binding protein; structural genomics, PSI2,MCS 92.37
2ef8_A84 C.ECOT38IS, putative transcription factor; helix-t 92.1
3ivp_A126 Putative transposon-related DNA-binding protein; A 92.01
2xi8_A66 Putative transcription regulator; HTH DNA-binding 91.92
2ppx_A99 AGR_C_3184P, uncharacterized protein ATU1735; HTH- 90.91
4ghj_A101 Probable transcriptional regulator; structural gen 90.78
1x57_A91 Endothelial differentiation-related factor 1; HMBF 90.26
3qq6_A78 HTH-type transcriptional regulator SINR; helix-tur 90.13
3op9_A114 PLI0006 protein; structural genomics, PSI-2, prote 89.83
2ict_A94 Antitoxin HIGA; helix-turn-helix, structural genom 89.77
3t76_A88 VANU, transcriptional regulator vanug; structural 89.55
3pxp_A 292 Helix-turn-helix domain protein; DNA-binding, basi 89.36
3omt_A73 Uncharacterized protein; structural genomics, PSI- 89.33
3f52_A117 CLP gene regulator (CLGR); helix-turn-helix motif, 89.31
1b0n_A111 Protein (SINR protein); transcription regulator, a 89.13
3fmy_A73 HTH-type transcriptional regulator MQSA (YGIT/B302 88.77
2o38_A120 Hypothetical protein; alpha-beta, helix-turn-helix 88.58
1lmb_392 Protein (lambda repressor); protein-DNA complex, d 88.19
1neq_A74 DNA-binding protein NER; NMR {Enterobacteria phage 87.55
2l49_A99 C protein; P2 bacteriophage, P2 C, direct repeats, 87.46
3bs3_A76 Putative DNA-binding protein; XRE-family, structur 87.03
2bnm_A 198 Epoxidase; oxidoreductase, cupin, HTH, cation-depe 86.92
1y9q_A 192 Transcriptional regulator, HTH_3 family; transcrip 86.57
3cec_A104 Putative antidote protein of plasmid maintenance; 86.42
3u3w_A 293 Transcriptional activator PLCR protein; ternary co 86.2
2wus_R112 RODZ, putative uncharacterized protein; structural 85.74
3trb_A104 Virulence-associated protein I; mobIle and extrach 84.76
2jvl_A107 TRMBF1; coactivator, helix-turn-helix, Pro binding 83.51
3bdn_A 236 Lambda repressor; repressor, allostery; HET: DNA; 83.48
3o9x_A133 Uncharacterized HTH-type transcriptional regulato; 82.09
2l1p_A83 DNA-binding protein SATB1; PSI-biology, NESG, stru 81.69
3bd1_A79 CRO protein; transcription factor, helix-turn-heli 80.74
2pij_A67 Prophage PFL 6 CRO; transcription factor, helix-tu 80.24
2qfc_A 293 PLCR protein; TPR, HTH, transcription regulation; 80.24
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7 Back     alignment and structure
Probab=100.00  E-value=6.9e-34  Score=240.09  Aligned_cols=84  Identities=38%  Similarity=0.644  Sum_probs=81.1

Q ss_pred             cCCCCCCCccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCccccc-chhHHHHHHHhhcCCCHHHH
Q psy3393         346 LGNSGELEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLK-SGRETFRRMWKWLQEPEFQR  424 (433)
Q Consensus       346 ~~~i~d~~~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLk-sGRE~YiRMyNWLqlPEdeR  424 (433)
                      +..+++.++|||++||++|++||++++|+|++||++||||+||||||||++||||++|+ +|||+|+||||||+++  ||
T Consensus         8 ~~p~~~~~~ldTk~I~~~ike~L~~~~isQ~~FA~~VLgrsQgtlS~lL~~PkpW~~L~~~Gre~yiRM~nWL~~~--er   85 (101)
T 1x2l_A            8 AGPGAEEEQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSDE--QN   85 (101)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHCCCCGGGCCHHHHHHHHHHHHHHTCT--HH
T ss_pred             CCCCCCcCccCHHHHHHHHHHHHHHcCCCHHHHHHHHHccccchHHHHhcCCCCHHHHhHhhhHHHHHHHHHccCH--HH
Confidence            45689999999999999999999999999999999999999999999999999999999 9999999999999997  89


Q ss_pred             HHHHHHh
Q psy3393         425 MSALRLA  431 (433)
Q Consensus       425 meILRl~  431 (433)
                      ++|||++
T Consensus        86 ~~~Lr~~   92 (101)
T 1x2l_A           86 VLALRTI   92 (101)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7 Back     alignment and structure
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A* Back     alignment and structure
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7 Back     alignment and structure
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7 Back     alignment and structure
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7 Back     alignment and structure
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A Back     alignment and structure
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3 Back     alignment and structure
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A* Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Back     alignment and structure
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L Back     alignment and structure
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B* Back     alignment and structure
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2 Back     alignment and structure
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656} Back     alignment and structure
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A Back     alignment and structure
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L* Back     alignment and structure
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV} Back     alignment and structure
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Back     alignment and structure
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3 Back     alignment and structure
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13 Back     alignment and structure
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} Back     alignment and structure
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis} Back     alignment and structure
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor} Back     alignment and structure
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi} Back     alignment and structure
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2} Back     alignment and structure
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile} Back     alignment and structure
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A Back     alignment and structure
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3 Back     alignment and structure
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus} Back     alignment and structure
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12 Back     alignment and structure
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis} Back     alignment and structure
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua} Back     alignment and structure
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A Back     alignment and structure
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus} Back     alignment and structure
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii} Back     alignment and structure
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A Back     alignment and structure
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A Back     alignment and structure
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12} Back     alignment and structure
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13 Back     alignment and structure
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A* Back     alignment and structure
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A Back     alignment and structure
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A Back     alignment and structure
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis} Back     alignment and structure
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A Back     alignment and structure
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Back     alignment and structure
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima} Back     alignment and structure
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii} Back     alignment and structure
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei} Back     alignment and structure
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda} Back     alignment and structure
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A Back     alignment and structure
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A* Back     alignment and structure
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa} Back     alignment and structure
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens} Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 433
d1s7ea280 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mou 2e-42
d2o4aa183 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Hu 1e-36
d2csfa188 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human 2e-34
d1x2la187 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {H 2e-33
d1wh6a_101 a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human 2e-31
d1wh8a_111 a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human 6e-30
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: CUT domain
domain: Hepatocyte nuclear factor 6
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  141 bits (358), Expect = 2e-42
 Identities = 75/79 (94%), Positives = 77/79 (97%)

Query: 354 EINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRM 413
           EINTKE+AQRI+ ELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRM
Sbjct: 1   EINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRM 60

Query: 414 WKWLQEPEFQRMSALRLAG 432
           WKWLQEPEFQRMSALRLA 
Sbjct: 61  WKWLQEPEFQRMSALRLAA 79
>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query433
d1s7ea280 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 100.0
d1x2la187 Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens 99.97
d1wh6a_101 Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens 99.95
d1wh8a_111 Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens 99.95
d2csfa188 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.95
d2o4aa183 DNA-binding protein SATB1 {Human (Homo sapiens) [T 99.95
d1ic8a294 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (H 95.5
d2r1jl166 P22 C2 repressor, DNA-binding domain {Salmonella b 94.28
d1y7ya169 Restriction-modification controller protein C.AhdI 93.99
d2croa_65 cro 434 {Bacteriophage 434 [TaxId: 10712]} 93.4
d1r69a_63 434 C1 repressor, DNA-binding domain {Bacteriophag 92.78
d2b5aa177 Regulatory protein C.BclI {Bacillus caldolyticus [ 92.16
d2a6ca169 HTH-motif protein NE1354 {Nitrosomonas europaea [T 92.04
d1b0na268 SinR repressor, DNA-binding domain {Bacillus subti 91.79
d2icta187 Antitoxin HigA {Escherichia coli [TaxId: 562]} 91.5
d2o38a189 Hypothetical protein RPA3824 {Rhodopseudomonas pal 91.47
d2auwa167 Hypothetical protein NE0471 C-terminal domain {Nit 91.15
d1utxa_66 Putative transcription regulator CylR2 {Enterococc 90.83
d1x57a178 Endothelial differentiation-related factor 1, EDF1 90.28
d2ppxa162 Uncharacterized protein Atu1735 {Agrobacterium tum 89.67
d1lmb3_87 lambda C1 repressor, DNA-binding domain {Bacteriop 88.4
d1y9qa179 Probable transcriptional regulator VC1968, N-termi 87.67
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: CUT domain
domain: Hepatocyte nuclear factor 6
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-35  Score=239.44  Aligned_cols=80  Identities=94%  Similarity=1.423  Sum_probs=79.3

Q ss_pred             ccCHHHHHHHHHHHHHHcCCChHHHHhhhhcccCchhhhhhcCCCCcccccchhHHHHHHHhhcCCCHHHHHHHHHHhcC
Q psy3393         354 EINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAGN  433 (433)
Q Consensus       354 ~IDTKeIa~rIkewLkr~~IsQavFAekILgRSQGTLSDLLrnPKPW~kLksGRE~YiRMyNWLqlPEdeRmeILRl~~c  433 (433)
                      +|||++||++|+++|++++|+|++||++|||||||||||||++||||++|++||++|+||||||++||.+|+.+|||++|
T Consensus         1 eldT~~I~~~i~~eL~~~~IsQ~~Fa~~vL~rsQGtlSdLL~kPKPW~~l~~gre~y~RM~~wL~~pe~~r~~~l~~~~~   80 (80)
T d1s7ea2           1 EINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAAC   80 (80)
T ss_dssp             CCCSHHHHHHHHHHHTSSCCCHHHHHHHTSSSCSSHHHHHTTSCCTTCCCSSCHHHHHHHHHHHHTTSCCTTSSCCCSCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCHHHHHHHHHccChHHHHHHHcCCCChhhhcchhHHHHHHHHHHcCHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]} Back     information, alignment and structure
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]} Back     information, alignment and structure
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]} Back     information, alignment and structure
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]} Back     information, alignment and structure
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]} Back     information, alignment and structure
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]} Back     information, alignment and structure
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure