Diaphorina citri psyllid: psy3927


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
MNVDIVNPATDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVLTENDEDPHKTECT
ccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccccccccc
******NPATDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVLTENDEDPH***CT
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MNVDIVNPATDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVLTENDEDPHKTECT

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Ras-GEF domain-containing family member 1B Guanine nucleotide exchange factor (GEF) with specificity for RAP2A and other Ras family proteins (in vitro).confidentQ8JZL7
Ras-GEF domain-containing family member 1B Guanine nucleotide exchange factor (GEF) with specificity for rap2a and other Ras family proteins (in vitro).confidentQ28EC1
Ras-GEF domain-containing family member 1B-A Guanine nucleotide exchange factor (GEF) for Ras family proteins (in vitro).confidentQ6DHR3

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005488 [MF]bindingprobableGO:0003674
GO:0071944 [CC]cell peripheryprobableGO:0005575, GO:0044464, GO:0005623
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0023051 [BP]regulation of signalingprobableGO:0008150, GO:0065007, GO:0050789
GO:0010646 [BP]regulation of cell communicationprobableGO:0008150, GO:0065007, GO:0050789, GO:0050794
GO:0017034 [MF]Rap guanyl-nucleotide exchange factor activityprobableGO:0005088, GO:0005083, GO:0005085, GO:0030695, GO:0003674, GO:0060589, GO:0030234
GO:0007264 [BP]small GTPase mediated signal transductionprobableGO:0044700, GO:0051716, GO:0050896, GO:0009987, GO:0050794, GO:0008150, GO:0065007, GO:0044763, GO:0007165, GO:0023052, GO:0007154, GO:0035556, GO:0050789, GO:0044699
GO:0016477 [BP]cell migrationprobableGO:0040011, GO:0048870, GO:0009987, GO:0006928, GO:0051674, GO:0044763, GO:0008150, GO:0051179, GO:0044699
GO:0065008 [BP]regulation of biological qualityprobableGO:0008150, GO:0065007

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3KSY, chain A
Confidence level:very confident
Coverage over the Query: 9-166,178-262
View the alignment between query and template
View the model in PyMOL