Psyllid ID: psy3927

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
MNVDIVNPATDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVLTENDEDPHKTECT
ccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccccccccc
cccccccHcccccEccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccHHHcHHHHHHHccccc
mnvdivnpatditelcptpnhiAQQLTHIELerlsfigpEEFVQAFAkenphletsfkdmkrTRNLENYVQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGlnmspisrLKKTWNKIQSGKFSilehqmdpssnfssYRSTLKAAMWrsagatderqriVIPFFSLLVKDLYFlnegctnklpnghinFEKFWQLAKQVTEFITwkqvtcpfgkvnktimflqsspvltendedphktect
mnvdivnpatditelcptPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPhletsfkdmkrtRNLENYVQWFNRLSYLVATEvvkhvkkkqrVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSGKFSilehqmdpssNFSSYRSTLKAAMWRsagatderqrIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLqsspvltendedphktect
MNVDIVNPATDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEvvkhvkkkqrvkvvEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVLTENDEDPHKTECT
******NPATDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSGKFSIL****************LKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQ******************
************TELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENP**********RTRNLENYVQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSGKFSILEHQMDPSSNFSSYRSTLKAAMWR*****DERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVLTENDEDPHKTECT
MNVDIVNPATDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVL*************
**VDIVNPATDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVLTENDEDPH***CT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNVDIVNPATDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVLTENDEDPHKTECT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query262 2.2.26 [Sep-21-2011]
Q8JZL7473 Ras-GEF domain-containing yes N/A 0.923 0.511 0.643 6e-96
Q6DHR3514 Ras-GEF domain-containing yes N/A 0.923 0.470 0.651 8e-96
Q28EC1472 Ras-GEF domain-containing yes N/A 0.923 0.512 0.643 2e-95
Q0VAM2473 Ras-GEF domain-containing yes N/A 0.923 0.511 0.639 2e-95
Q5RC04472 Ras-GEF domain-containing yes N/A 0.923 0.512 0.639 3e-95
A4IFE4472 Ras-GEF domain-containing yes N/A 0.923 0.512 0.635 1e-94
Q6DBW1475 Ras-GEF domain-containing no N/A 0.923 0.509 0.621 1e-89
Q9D300466 Ras-GEF domain-containing no N/A 0.923 0.519 0.611 1e-88
Q8N431466 Ras-GEF domain-containing no N/A 0.923 0.519 0.615 1e-88
Q95KH6466 Ras-GEF domain-containing N/A N/A 0.923 0.519 0.611 3e-88
>sp|Q8JZL7|RGF1B_MOUSE Ras-GEF domain-containing family member 1B OS=Mus musculus GN=Rasgef1b PE=1 SV=1 Back     alignment and function desciption
 Score =  350 bits (898), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 157/244 (64%), Positives = 201/244 (82%), Gaps = 2/244 (0%)

Query: 11  DITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENP--HLETSFKDMKRTRNLEN 68
           DI  +C  P  +AQQLTHIELERL++IGPEEFVQAF +++P  + ++ + + K+TRNLE 
Sbjct: 198 DIMTVCSDPYTLAQQLTHIELERLNYIGPEEFVQAFVQKDPLDNDKSCYSERKKTRNLEA 257

Query: 69  YVQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPI 128
           YV+WFNRLSYLVATE+   VKKK R +++E++I+ ARECFNIGNFNSLMAII+G+NMSP+
Sbjct: 258 YVEWFNRLSYLVATEICMPVKKKHRARMIEYFIDVARECFNIGNFNSLMAIISGMNMSPV 317

Query: 129 SRLKKTWNKIQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLL 188
           SRLKKTW K+++ KF ILEHQMDPSSNF +YR+ L+ A  RS  A   R++IVIPFFSLL
Sbjct: 318 SRLKKTWAKVKTAKFDILEHQMDPSSNFYNYRTALRGAAQRSLTAHSSREKIVIPFFSLL 377

Query: 189 VKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPV 248
           +KD+YFLNEGC N+LPNGH+NFEKFW+LAKQV+EF+TWKQV CPF +  K + +L S PV
Sbjct: 378 IKDIYFLNEGCVNRLPNGHVNFEKFWELAKQVSEFMTWKQVECPFERDRKVLQYLLSVPV 437

Query: 249 LTEN 252
            +E+
Sbjct: 438 FSED 441
Guanine nucleotide exchange factor (GEF) with specificity for RAP2A and other Ras family proteins (in vitro).
Mus musculus (taxid: 10090)
>sp|Q6DHR3|RG1BA_DANRE Ras-GEF domain-containing family member 1B-A OS=Danio rerio GN=rasgef1ba PE=2 SV=2 Back     alignment and function description
>sp|Q28EC1|RGF1B_XENTR Ras-GEF domain-containing family member 1B OS=Xenopus tropicalis GN=rasgef1b PE=2 SV=1 Back     alignment and function description
>sp|Q0VAM2|RGF1B_HUMAN Ras-GEF domain-containing family member 1B OS=Homo sapiens GN=RASGEF1B PE=2 SV=2 Back     alignment and function description
>sp|Q5RC04|RGF1B_PONAB Ras-GEF domain-containing family member 1B OS=Pongo abelii GN=RASGEF1B PE=2 SV=2 Back     alignment and function description
>sp|A4IFE4|RGF1B_BOVIN Ras-GEF domain-containing family member 1B OS=Bos taurus GN=RASGEF1B PE=2 SV=1 Back     alignment and function description
>sp|Q6DBW1|RG1BB_DANRE Ras-GEF domain-containing family member 1B-B OS=Danio rerio GN=rasgef1bb PE=2 SV=1 Back     alignment and function description
>sp|Q9D300|RGF1C_MOUSE Ras-GEF domain-containing family member 1C OS=Mus musculus GN=Rasgef1c PE=2 SV=1 Back     alignment and function description
>sp|Q8N431|RGF1C_HUMAN Ras-GEF domain-containing family member 1C OS=Homo sapiens GN=RASGEF1C PE=2 SV=2 Back     alignment and function description
>sp|Q95KH6|RGF1C_MACFA Ras-GEF domain-containing family member 1C OS=Macaca fascicularis GN=RASGEF1C PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
332016646 425 Ras-GEF domain-containing family member 0.961 0.592 0.853 1e-126
307184641 425 Ras-GEF domain-containing family member 0.961 0.592 0.849 1e-126
345489212 633 PREDICTED: ras-GEF domain-containing fam 0.923 0.382 0.867 1e-126
322783235 447 hypothetical protein SINV_11333 [Solenop 0.961 0.563 0.849 1e-126
242023310 417 conserved hypothetical protein [Pediculu 0.927 0.582 0.872 1e-126
340712639 453 PREDICTED: ras-GEF domain-containing fam 0.958 0.554 0.848 1e-125
383859028 453 PREDICTED: ras-GEF domain-containing fam 0.961 0.556 0.845 1e-125
380021614 508 PREDICTED: ras-GEF domain-containing fam 0.958 0.494 0.828 1e-123
328782420 453 PREDICTED: ras-GEF domain-containing fam 0.961 0.556 0.825 1e-122
270004878 705 hypothetical protein TcasGA2_TC003425 [T 0.927 0.344 0.843 1e-121
>gi|332016646|gb|EGI57511.1| Ras-GEF domain-containing family member 1B [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/252 (85%), Positives = 229/252 (90%)

Query: 10  TDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENY 69
            DITELCP+   +AQQLTH+ELERLS+IGPEEFVQAFAKE+PHLETSFKDMK+TRNLE+Y
Sbjct: 158 VDITELCPSATVLAQQLTHVELERLSYIGPEEFVQAFAKESPHLETSFKDMKKTRNLESY 217

Query: 70  VQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPIS 129
           VQWFNRLSY VATEV KH KKKQRV+VVE+WIE ARECFNIGNFNSLMAIIAGLNMSPIS
Sbjct: 218 VQWFNRLSYFVATEVCKHAKKKQRVRVVEYWIETARECFNIGNFNSLMAIIAGLNMSPIS 277

Query: 130 RLKKTWNKIQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLV 189
           RLKKTW+KIQS KFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIV+PFFSLLV
Sbjct: 278 RLKKTWSKIQSAKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVVPFFSLLV 337

Query: 190 KDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVL 249
           KDLYFLNEGC+NKLPNGHINFEKFWQLAKQVTEFI WKQV CPF K  + I FLQ+SPVL
Sbjct: 338 KDLYFLNEGCSNKLPNGHINFEKFWQLAKQVTEFIAWKQVACPFEKNPRVIAFLQASPVL 397

Query: 250 TENDEDPHKTEC 261
           TEN       EC
Sbjct: 398 TENTLALASFEC 409

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307184641|gb|EFN70972.1| Ras-GEF domain-containing family member 1B [Camponotus floridanus] Back     alignment and taxonomy information
>gi|345489212|ref|XP_003426071.1| PREDICTED: ras-GEF domain-containing family member 1B-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|322783235|gb|EFZ10821.1| hypothetical protein SINV_11333 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|242023310|ref|XP_002432077.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517451|gb|EEB19339.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|340712639|ref|XP_003394863.1| PREDICTED: ras-GEF domain-containing family member 1B-like isoform 1 [Bombus terrestris] gi|340712641|ref|XP_003394864.1| PREDICTED: ras-GEF domain-containing family member 1B-like isoform 2 [Bombus terrestris] gi|350399570|ref|XP_003485572.1| PREDICTED: ras-GEF domain-containing family member 1B-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383859028|ref|XP_003705000.1| PREDICTED: ras-GEF domain-containing family member 1B-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380021614|ref|XP_003694656.1| PREDICTED: ras-GEF domain-containing family member 1B-like [Apis florea] Back     alignment and taxonomy information
>gi|328782420|ref|XP_396254.4| PREDICTED: ras-GEF domain-containing family member 1B-like [Apis mellifera] Back     alignment and taxonomy information
>gi|270004878|gb|EFA01326.1| hypothetical protein TcasGA2_TC003425 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
FB|FBgn0037188680 CG7369 [Drosophila melanogaste 0.786 0.302 0.689 1.5e-87
MGI|MGI:2443755473 Rasgef1b "RasGEF domain family 0.923 0.511 0.622 3.6e-82
RGD|1562220473 Rasgef1b "RasGEF domain family 0.931 0.515 0.617 3.6e-82
ZFIN|ZDB-GENE-030131-5783514 rasgef1ba "RasGEF domain famil 0.923 0.470 0.627 5.8e-82
UNIPROTKB|Q28EC1472 rasgef1b "Ras-GEF domain-conta 0.923 0.512 0.622 7.4e-82
UNIPROTKB|E2QRX5473 RASGEF1B "Uncharacterized prot 0.923 0.511 0.614 1.2e-81
UNIPROTKB|F6V6H9472 RASGEF1B "Uncharacterized prot 0.923 0.512 0.614 1.2e-81
UNIPROTKB|Q0VAM2473 RASGEF1B "Ras-GEF domain-conta 0.923 0.511 0.618 1.2e-81
UNIPROTKB|Q5RC04472 RASGEF1B "Ras-GEF domain-conta 0.923 0.512 0.618 1.2e-81
UNIPROTKB|A4IFE4472 RASGEF1B "Ras-GEF domain-conta 0.923 0.512 0.614 3.2e-81
FB|FBgn0037188 CG7369 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 754 (270.5 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
 Identities = 142/206 (68%), Positives = 162/206 (78%)

Query:    56 SFKDMKRTRNLENYVQWFNRLSYLVATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNS 115
             S  DMK+TRNLE+YVQWFNRLSYL A+E              E+WIE ARECFNIGNFNS
Sbjct:   440 SLNDMKKTRNLESYVQWFNRLSYLTASEIVKYPKKKQRVRIIEYWIETARECFNIGNFNS 499

Query:   116 LMAIIAGLNMSPISRLKKTWNKIQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATD 175
             LMAIIAGLN++PI RLKKTW K+QS KFS+LEHQMDP+SNF+SYRSTLKAAMWRS GAT+
Sbjct:   500 LMAIIAGLNLAPIGRLKKTWAKVQSAKFSVLEHQMDPTSNFNSYRSTLKAAMWRSEGATE 559

Query:   176 ERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGK 235
             ER+RI+IPFFSL VKDLYFLNEGC+N+LPN HINFEK  QLAKQV EF  WK+V CPF +
Sbjct:   560 ERERIIIPFFSLFVKDLYFLNEGCSNRLPNNHINFEKCSQLAKQVMEFNEWKKVNCPFER 619

Query:   236 VNKTIMFLQSSPVLTENDEDPHKTEC 261
             +   I +LQ+S VL EN       EC
Sbjct:   620 LPNVIAYLQNSAVLNENTLSMASFEC 645
GO:0005088 "Ras guanyl-nucleotide exchange factor activity" evidence=ISS
GO:0008360 "regulation of cell shape" evidence=IMP
GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
MGI|MGI:2443755 Rasgef1b "RasGEF domain family, member 1B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1562220 Rasgef1b "RasGEF domain family, member 1B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5783 rasgef1ba "RasGEF domain family, member 1Ba" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q28EC1 rasgef1b "Ras-GEF domain-containing family member 1B" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|E2QRX5 RASGEF1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6V6H9 RASGEF1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VAM2 RASGEF1B "Ras-GEF domain-containing family member 1B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RC04 RASGEF1B "Ras-GEF domain-containing family member 1B" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|A4IFE4 RASGEF1B "Ras-GEF domain-containing family member 1B" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5RC04RGF1B_PONABNo assigned EC number0.63930.92360.5127yesN/A
Q28EC1RGF1B_XENTRNo assigned EC number0.64340.92360.5127yesN/A
Q0VAM2RGF1B_HUMANNo assigned EC number0.63930.92360.5116yesN/A
Q6DHR3RG1BA_DANRENo assigned EC number0.65160.92360.4708yesN/A
Q8JZL7RGF1B_MOUSENo assigned EC number0.64340.92360.5116yesN/A
A4IFE4RGF1B_BOVINNo assigned EC number0.63520.92360.5127yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
pfam00617185 pfam00617, RasGEF, RasGEF domain 6e-64
smart00147242 smart00147, RasGEF, Guanine nucleotide exchange fa 4e-59
cd00155237 cd00155, RasGEF, Guanine nucleotide exchange facto 1e-56
>gnl|CDD|216025 pfam00617, RasGEF, RasGEF domain Back     alignment and domain information 
 Score =  197 bits (504), Expect = 6e-64
 Identities = 86/201 (42%), Positives = 111/201 (55%), Gaps = 24/201 (11%)

Query: 19  PNHIAQQLTHIELERLSFIGPEEFV-QAFAKENPHLETSFKDMKRTRNLENYVQWFNRLS 77
           P  +A+QLT IE E  S I P E +  A+ K         KD K + N+E ++  FN+LS
Sbjct: 5   PLELARQLTLIESELFSAIDPRELLDSAWGK---------KDSKLSPNIEAFISRFNQLS 55

Query: 78  YLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNK 137
             VATE++     K+R KV++ +I+ A+ C  + NFNSLMAII+GLN SPISRLKKTW  
Sbjct: 56  RWVATEILSEEDLKKRAKVIKKFIKIAQHCRELNNFNSLMAIISGLNSSPISRLKKTWEL 115

Query: 138 IQSG---KFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYF 194
           +          LE  M PS NF +YR  LK A               IPF  L +KDL F
Sbjct: 116 VSKKYKKLLEELEELMSPSKNFKNYREALKKA-----------NPPCIPFLGLYLKDLTF 164

Query: 195 LNEGCTNKLPNGHINFEKFWQ 215
           + EG  + L NG INFEK  +
Sbjct: 165 IEEGNPDFLDNGLINFEKRRK 185

Guanine nucleotide exchange factor for Ras-like small GTPases. Length = 185
>gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>gnl|CDD|238087 cd00155, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 262
smart00147242 RasGEF Guanine nucleotide exchange factor for Ras- 100.0
cd00155237 RasGEF Guanine nucleotide exchange factor for Ras- 100.0
PF00617188 RasGEF: RasGEF domain; InterPro: IPR001895 Ras pro 100.0
KOG3541|consensus477 100.0
KOG3629|consensus 728 100.0
KOG3542|consensus 1283 100.0
KOG2378|consensus573 100.0
KOG3417|consensus 840 99.89
KOG3417|consensus840 99.52
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information 
Probab=100.00  E-value=4.6e-55  Score=376.97  Aligned_cols=230  Identities=33%  Similarity=0.537  Sum_probs=215.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCCHHHHHhHHhhcCCCCcccccccccCc-cHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Q psy3927          16 CPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTR-NLENYVQWFNRLSYLVATEVVKHVKKKQRV   94 (262)
Q Consensus        16 ~~~~~~iA~QLTl~d~~lf~~I~~~e~l~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~~n~ls~wv~~~Il~~~~~~~Ra   94 (262)
                      +++|.+||+|||++|+++|++|+|.||+...|.+...       ...+| +|.+++++||.++.||+.+||.++++++|+
T Consensus         3 ~~~~~eiA~QlTl~d~~~f~~I~~~El~~~~~~~~~~-------~~~~p~~i~~~~~~~n~is~wv~~~Il~~~~~~~R~   75 (242)
T smart00147        3 LLDPKELAEQLTLLDFELFRKIDPSELLGSVWGKRSK-------KSPSPLNLERFIERFNEVSNWVATEILKQTTPKDRA   75 (242)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCCC-------CCCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            5999999999999999999999999999998876532       23567 999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCChhHHHHHHHHhCccchhhHHHHHHhcchh---hHHHHHhhcCCCCChHHHHHHHHHHhhhcc
Q psy3927          95 KVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSG---KFSILEHQMDPSSNFSSYRSTLKAAMWRSA  171 (262)
Q Consensus        95 ~~i~~~I~va~~~~~l~Nf~s~~aI~~~L~~~~i~rL~~tw~~l~~~---~~~~l~~l~s~~~n~~~yr~~l~~~~~~~~  171 (262)
                      +++++||+||.+|.++|||+|++||++||++++|.||+.||+.++++   .++.|++++++.+||+.||++++++     
T Consensus        76 ~~i~~fI~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~-----  150 (242)
T smart00147       76 ELLSKFIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNFKNYREALSSC-----  150 (242)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHhCChHHhhhHHHHHHCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-----
Confidence            99999999999999999999999999999999999999999999964   6889999999999999999999986     


Q ss_pred             cccccCCCccccchhhhhhHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCc-hHHHHHHhcC-CCC
Q psy3927         172 GATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKV-NKTIMFLQSS-PVL  249 (262)
Q Consensus       172 ~~~~~~~~p~IP~lg~~l~dl~~i~~~~p~~~~~~liN~~K~~~i~~~i~~~~~~q~~~y~~~~~-~~i~~~l~~~-~~~  249 (262)
                           ..+|||||+|++++|++++++|+|++.++|+|||.|++.++++|+.+..||+.+|+|.++ +++|.+|.+. ..+
T Consensus       151 -----~~~p~IP~lg~~l~dl~~~~~~~~~~~~~~~iNf~k~~~i~~~i~~~~~~Q~~~y~~~~~~~~iq~~l~~~~~~~  225 (242)
T smart00147      151 -----NLPPCVPFLGVLLKDLTFIDEGNPDFLENGLVNFEKRRKIAEILREIRQLQSQPYNLRPNRSDIQSLLQQLLDHL  225 (242)
T ss_pred             -----CCCCCccchHHHHHHHHHHHccCcccccCCcccHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhhc
Confidence                 238999999999999999999999998899999999999999999999999999999999 9999999996 444


Q ss_pred             -ChhhhhcccccCC
Q psy3927         250 -TENDEDPHKTECT  262 (262)
Q Consensus       250 -~~~~L~~~sl~c~  262 (262)
                       ++|++|++|++||
T Consensus       226 ~~~~~~~~~S~~~E  239 (242)
T smart00147      226 DEEEELYQLSLKIE  239 (242)
T ss_pred             CCHHHHHHHHHHhC
Confidence             5669999999997

>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases Back     alignment and domain information
>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP [] Back     alignment and domain information
>KOG3541|consensus Back     alignment and domain information
>KOG3629|consensus Back     alignment and domain information
>KOG3542|consensus Back     alignment and domain information
>KOG2378|consensus Back     alignment and domain information
>KOG3417|consensus Back     alignment and domain information
>KOG3417|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
2byv_E999 Structure Of The Camp Responsive Exchange Factor Ep 1e-13
4f7z_A999 Conformational Dynamics Of Exchange Protein Directl 1e-13
3cf6_E694 Structure Of Epac2 In Complex With Cyclic-Amp And R 2e-13
2ije_S240 Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Le 2e-13
3qxl_A271 Crystal Structure Of The Cdc25 Domain From Ral-Spec 9e-09
1xd4_A852 Crystal Structure Of The Dh-Ph-Cat Module Of Son Of 3e-06
3ksy_A1049 Crystal Structure Of The Histone Domain, Dh-Ph Unit 3e-06
1xdv_A847 Experimentally Phased Structure Of Human The Son Of 3e-06
2ii0_A490 Crystal Structure Of Catalytic Domain Of Son Of Sev 3e-06
1nvu_S481 Structural Evidence For Feedback Activation By Rasg 3e-06
1xd2_C484 Crystal Structure Of A Ternary Ras:sos:ras*gdp Comp 3e-06
1bkd_S477 Complex Of Human H-Ras With Human Sos-1 Length = 47 4e-06
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In Its Auto-Inhibited State Length = 999 Back     alignment and structure 
Iteration: 1

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 93/200 (46%), Gaps = 24/200 (12%)
Query: 22  IAQQLTHIELERLSFIGPEEFV-QAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLV 80
           +A Q+T  + E  + +   E +   F + N      FK  K T NL+ +++ FN + + V
Sbjct: 764 LAYQMTTYDWELFNCVHELELIYHTFGRHN------FK--KTTANLDLFLRRFNEIQFWV 815
Query: 81  ATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQS 140
            TE              + +I+ A  C    N NS  AI+ GL+   +SRL  TW K+ S
Sbjct: 816 VTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPS 875
Query: 141 --GKF-SILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNE 197
              KF +  E  MDPS N  +YR  L AA              +IPF  LL+KD+ F +E
Sbjct: 876 KFKKFYAEFESLMDPSRNHRAYR--LTAAKLEPP---------LIPFMPLLIKDMTFTHE 924
Query: 198 GCTNKLPNGHINFEKFWQLA 217
           G    + N  +NFEK   +A
Sbjct: 925 GNKTFIDN-LVNFEKMRMIA 943
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly Activated By Camp Length = 999 Back     alignment and structure
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap Length = 694 Back     alignment and structure
>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Length = 240 Back     alignment and structure
>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific Guanine- Nucleotide Exchange Factor Ralgps1a Length = 271 Back     alignment and structure
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of Sevenless (Sos) Length = 852 Back     alignment and structure
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And Catalytic Unit Of The Ras Activator Son Of Sevenless (Sos) Length = 1049 Back     alignment and structure
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of Sevenless Protein At 4.1 Ang. Length = 847 Back     alignment and structure
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless (Rem-Cdc25) In The Absence Of Ras Length = 490 Back     alignment and structure
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-Specific Nucleotide Exchange Factor Sos Length = 481 Back     alignment and structure
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex Length = 484 Back     alignment and structure
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1 Length = 477 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 5e-74
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 3e-64
3ksy_A1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 2e-63
2ii0_A490 SOS-1, SON of sevenless homolog 1; signaling prote 5e-62
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 3e-60
2byv_E999 RAP guanine nucleotide exchange factor 4; EPAC2, C 8e-60
3t6a_A333 Breast cancer anti-estrogen resistance protein 3; 7e-35
3t6g_A331 SH2 domain-containing protein 3C; CDC25-homology d 2e-28
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240 Back     alignment and structure
 Score =  224 bits (574), Expect = 5e-74
 Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 23/240 (9%)

Query: 19  PNHIAQQLTHIELERLSFIGPEEFV-QAFAKENPHLETSFKDMKRTRNLENYVQWFNRLS 77
              IA+QLT ++      I  EEF  Q + K   +        +RT  +    + FN +S
Sbjct: 6   ALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKY--------ERTPYIMKTTKHFNHVS 57

Query: 78  YLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNK 137
             +A+E++++     R   +E W+  A  C  + N+N+++ I + +N S I RLKKTW K
Sbjct: 58  NFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLK 117

Query: 138 IQSG---KFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYF 194
           +          L+  +     F + R +L+                 +P+  + + DL F
Sbjct: 118 VSKQTKSLLDKLQKLVSSDGRFKNLRESLRNC-----------DPPCVPYLGMYLTDLVF 166

Query: 195 LNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVLTENDE 254
           + EG  N   +G +NF K   ++  + E   ++Q T       K I +L     + + + 
Sbjct: 167 IEEGTPNYTEDGLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEES 226
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Length = 271 Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049 Back     alignment and structure
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Length = 490 Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694 Back     alignment and structure
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999 Back     alignment and structure
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Length = 333 Back     alignment and structure
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Length = 331 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
2ije_S240 Guanine nucleotide-releasing protein; rasgrf1, CDC 100.0
3qxl_A271 RAS-specific guanine nucleotide-releasing factor; 100.0
4f7z_A999 RAP guanine nucleotide exchange factor 4; cyclic n 100.0
2ii0_A490 SOS-1, SON of sevenless homolog 1; signaling prote 100.0
3cf6_E694 RAP guanine nucleotide exchange factor (GEF) 4; EP 100.0
3ksy_A1049 SOS-1, SON of sevenless homolog 1; RAS, RAS activa 100.0
3t6g_A331 SH2 domain-containing protein 3C; CDC25-homology d 99.74
3t6a_A333 Breast cancer anti-estrogen resistance protein 3; 99.73
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=5e-62  Score=418.17  Aligned_cols=228  Identities=25%  Similarity=0.413  Sum_probs=216.0

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCHHHHHhHHhhcCCCCcccccccccCccHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy3927          17 PTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKKKQRVKV   96 (262)
Q Consensus        17 ~~~~~iA~QLTl~d~~lf~~I~~~e~l~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~~~~~Ra~~   96 (262)
                      ++|.+||+|||++|+++|++|+|.||++..|.+...       ...+|++.+++++||.++.||+++||.+++.++||++
T Consensus         4 ~~p~eiA~QLTl~d~~lf~~I~~~E~l~~~w~~~~~-------~~~~p~i~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~   76 (240)
T 2ije_S            4 GSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEK-------YERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASA   76 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCGGGGGGGGGGSTTH-------HHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCHHHHhhhHhcCCCC-------CCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            689999999999999999999999999988876532       2358999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHhCccchhhHHHHHHhcchh---hHHHHHhhcCCCCChHHHHHHHHHHhhhcccc
Q psy3927          97 VEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSG---KFSILEHQMDPSSNFSSYRSTLKAAMWRSAGA  173 (262)
Q Consensus        97 i~~~I~va~~~~~l~Nf~s~~aI~~~L~~~~i~rL~~tw~~l~~~---~~~~l~~l~s~~~n~~~yr~~l~~~~~~~~~~  173 (262)
                      |++||+||.+|+++|||||++||++||++++|+||++||+.++++   .+++|+.++++++||++||.+++++       
T Consensus        77 i~~fI~iA~~~~~l~Nfns~~aI~~gL~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~-------  149 (240)
T 2ije_S           77 IEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNC-------  149 (240)
T ss_dssp             HHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHHHHhcCCHhHHHHHHHHhccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhc-------
Confidence            999999999999999999999999999999999999999999964   6899999999999999999999864       


Q ss_pred             cccCCCccccchhhhhhHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHhcCC-CCChh
Q psy3927         174 TDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSP-VLTEN  252 (262)
Q Consensus       174 ~~~~~~p~IP~lg~~l~dl~~i~~~~p~~~~~~liN~~K~~~i~~~i~~~~~~q~~~y~~~~~~~i~~~l~~~~-~~~~~  252 (262)
                          .+|||||+|+|++||+++++|+|+++++|+|||+|+++++++|.++.+||+.+|+|.++++|++||.+.+ ..+||
T Consensus       150 ----~~p~IPflg~~L~DL~~i~egnp~~~~~~lINf~K~~~~~~ii~~i~~~q~~~y~~~~~~~i~~~l~~~~~~~~e~  225 (240)
T 2ije_S          150 ----DPPCVPYLGMYLTDLVFIEEGTPNYTEDGLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEE  225 (240)
T ss_dssp             ----CSSCBCCHHHHHHHHHHHHHHSCSBCTTSCBCHHHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHCCTTCCCHH
T ss_pred             ----CCCccCccchHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHhCcCCCCHH
Confidence                7899999999999999999999999999999999999999999999999999999999999999999987 67889


Q ss_pred             hhhcccccCC
Q psy3927         253 DEDPHKTECT  262 (262)
Q Consensus       253 ~L~~~sl~c~  262 (262)
                      +||++|++||
T Consensus       226 ~ly~~Sl~~E  235 (240)
T 2ije_S          226 SLYESSLLIE  235 (240)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhC
Confidence            9999999997
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Back     alignment and structure
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Back     alignment and structure
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 262
d1nvus_481 a.117.1.1 (S:) Son of sevenless protein homolog 1 3e-52
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 481 Back     information, alignment and structure

class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  174 bits (442), Expect = 3e-52
 Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 24/246 (9%)

Query: 15  LCPTPNHIAQQLTHIELERLSFIGPEEFVQ-AFAKENPHLETSFKDMKRTRNLENYVQWF 73
           L   P  IA+QLT +E +    + P E V   + KE+            + NL   ++  
Sbjct: 212 LTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKE--------INSPNLLKMIRHT 263

Query: 74  NRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKK 133
             L+      +V+    ++RV VV   IE  +    + NFN ++ +++ +N SP+ RL  
Sbjct: 264 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 323

Query: 134 TWNKIQSGKFSILEH-QMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDL 192
           T+ +I S +  ILE        ++  Y + L++                +PFF + + ++
Sbjct: 324 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI-----------NPPCVPFFGIYLTNI 372

Query: 193 YFLNEGCTNKLP---NGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVL 249
               EG    L       INF K  ++A+   E   ++         +    F ++   +
Sbjct: 373 LKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPM 432

Query: 250 TENDED 255
             + E 
Sbjct: 433 GNSMEK 438

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
d1nvus_481 Son of sevenless protein homolog 1 (sos-1) {Human 100.0
>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-53  Score=398.01  Aligned_cols=233  Identities=21%  Similarity=0.302  Sum_probs=214.3

Q ss_pred             CccCccccCCCHHHHHHHHHHHHHHHHhCCCHHHHHhHHhhcCCCCcccccccccCccHHHHHHHHHHHHHHHHHHhcCC
Q psy3927           8 PATDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKH   87 (262)
Q Consensus         8 ~~~~il~~~~~~~~iA~QLTl~d~~lf~~I~~~e~l~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~   87 (262)
                      +.++|+  +++|.+||+|||++|+++|++|.|.||++..|.+...       ...+|||.+++++||.++.||+++||.+
T Consensus       207 ~~~~l~--~~~~~eiA~QLTl~~~~~f~~I~~~E~l~~~~~~~~~-------~~~~pni~~~~~~~n~ls~wv~~~Il~~  277 (481)
T d1nvus_         207 ETFDLL--TLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDK-------EINSPNLLKMIRHTTNLTLWFEKCIVET  277 (481)
T ss_dssp             TTCCTT--TSCHHHHHHHHHHHHHHHHHTCCGGGTGGGGGGSTTH-------HHHCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCcccc--cCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHcccCC-------CCCCCcHHHHHHHHhHHHHHHHHHHhCC
Confidence            345577  4999999999999999999999999999998876532       3468999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhCccchhhHHHHHHhcchh---hHHHHHhhcCCCCChHHHHHHHH
Q psy3927          88 VKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSG---KFSILEHQMDPSSNFSSYRSTLK  164 (262)
Q Consensus        88 ~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~~L~~~~i~rL~~tw~~l~~~---~~~~l~~l~s~~~n~~~yr~~l~  164 (262)
                      +++++|++++++||+||.+|+++||||+++||++||++++|+||++||+.++++   .++.|+.+++  +||++||..+.
T Consensus       278 ~~~~~R~~~i~~fI~ia~~~~~l~Nf~s~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~--~n~~~yr~~l~  355 (481)
T d1nvus_         278 ENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSE--DHYKKYLAKLR  355 (481)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHhcc--hhHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999975   5777888864  78999999999


Q ss_pred             HHhhhcccccccCCCccccchhhhhhHHHHHhhcCCCCCC---CCcchHHHHHHHHHHHHHHHHhhccCCCCCCchHHHH
Q psy3927         165 AAMWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLP---NGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIM  241 (262)
Q Consensus       165 ~~~~~~~~~~~~~~~p~IP~lg~~l~dl~~i~~~~p~~~~---~~liN~~K~~~i~~~i~~~~~~q~~~y~~~~~~~i~~  241 (262)
                      +.           .+|||||+|++++||+++++|+|++++   +|+|||.|+++++++|.++.+||+.+|+|.++++|++
T Consensus       356 ~~-----------~~p~IP~lg~~l~Dl~~~~~gn~~~~~~~~~~lINf~K~~~i~~~i~~i~~~Q~~~y~~~~~~~i~~  424 (481)
T d1nvus_         356 SI-----------NPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKR  424 (481)
T ss_dssp             HS-----------CSCCBCCSHHHHHHHHHHHHSSCSEEEETTEEEEEHHHHHHHHHHHHHHHHHHSCCCCCCCCHHHHH
T ss_pred             cC-----------CCCeEeeeccHHHHHHHHHhcCCccccCCCCceEcHHHHHHHHHHHHHHHHHhcCCCCCCcChHHHH
Confidence            85           789999999999999999999999864   6899999999999999999999999999999999999


Q ss_pred             HHhcCCCCC-------hhhhhcccccCC
Q psy3927         242 FLQSSPVLT-------ENDEDPHKTECT  262 (262)
Q Consensus       242 ~l~~~~~~~-------~~~L~~~sl~c~  262 (262)
                      ||.+.+.+.       +|+||++|++||
T Consensus       425 ~l~~~~~~~~~~~~~~~d~l~~lS~~~E  452 (481)
T d1nvus_         425 FFENLNPMGNSMEKEFTDYLFNKSLEIE  452 (481)
T ss_dssp             HHHTCCTTTTCCHHHHHHHHHHHHHHHS
T ss_pred             HHHhhhhhhhhhhccchHHHHHHHHHhC
Confidence            999987654       578999999997