Psyllid ID: psy4017

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MFKLCSAAVGLFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKELSDLKAGKPVKI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MFKLCSAAVGLFLAVQLVagkpagekyttkydnvdldqilkndrlfnNYYNclldkgkcspdgqelknklpdAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEkkfdpngtykAKYQKELsdlkagkpvki
Flexible Loop (DISEMBL)
MFKLCSAAVGLFLAVQLVAgkpagekyttkydnvdlDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATEckscsekqkegsKKIFKYLIDNKPEQWAELekkfdpngtyKAKYqkelsdlkagkpvki
Low Complexity Region (SEG)
MFKLCSAAVGLFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKELSDLKAGKPVKI
Disordered region (IsUnstruct)
**KLCSAAVGLFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKC********************************IFKYLIDNK***W********************************
Disordered Region (DISOPRED)
****CSAAVGLFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKELSDLKAGKPVK*
Disordered Region (DISEMBL)
MFKLCSAAVGLFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECK********GSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKELSDLKAGKPVKI
Disordered Region (DISPRO)
*FKLCSAAVGLFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKELSDLKAG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFKLCSAAVGLFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKELSDLKAGKPVKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q9W1C9	126	Ejaculatory bulb-specific	yes	N/A	0.720	0.777	0.571	3e-32
Q27377	155	Putative odorant-binding	no	N/A	0.727	0.638	0.525	6e-27
P86354	44	Viresin (Fragment) OS=Hel	N/A	N/A	0.323	1.0	0.568	6e-07

>sp|Q9W1C9|PEB3_DROME Ejaculatory bulb-specific protein 3 OS=Drosophila melanogaster GN=PebIII PE=1 SV=2

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 56/98 (57%), Positives = 81/98 (82%)

Query: 25  EKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEK 84
           +KYTTKYDN+D+D+ILK+DRLF NY+ CL+D GKC+P+G+ELK  LPDA+ TEC  CSEK
Sbjct: 19  DKYTTKYDNIDVDEILKSDRLFGNYFKCLVDNGKCTPEGRELKKSLPDALKTECSKCSEK 78

Query: 85  QKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQ 122
           Q++ + K+ +Y+I+NKPE+W +L+ K+DP+  Y  +Y+
Sbjct: 79  QRQNTDKVIRYIIENKPEEWKQLQAKYDPDEIYIKRYR 116

Protein component of the posterior mating plug.
Drosophila melanogaster (taxid: 7227)

>sp|Q27377|OB10_DROME Putative odorant-binding protein A10 OS=Drosophila melanogaster GN=a10 PE=1 SV=2

 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 70/99 (70%)

Query: 25  EKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEK 84
           + Y  K+DNVDLD+IL  +RL  NY  CL   G C+PD + LK  LPDAI T+C  C+EK
Sbjct: 48  QAYDDKFDNVDLDEILNQERLLINYIKCLEGTGPCTPDAKMLKEILPDAIQTDCTKCTEK 107

Query: 85  QKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQK 123
           Q+ G++K+ ++LIDN+P  W  LEK +DP GTY+ KYQ+
Sbjct: 108 QRYGAEKVTRHLIDNRPTDWERLEKIYDPEGTYRIKYQE 146

Drosophila melanogaster (taxid: 7227)

>sp|P86354|VIRE2_HELVI Viresin (Fragment) OS=Heliothis virescens PE=1 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 32/44 (72%)

Query: 31 YDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAI 74
          YDNV+LD+IL NDRL   Y  CLLD+GK +PD +ELK  +  A+
Sbjct: 1  YDNVNLDEILANDRLLVPYIKCLLDEGKKAPDAKELKEHIRXAL 44

Has antibacterial activity against the Gram-negative bacteria E.coli and E.cloacae, but not against the Gram-negative bacteria P.aeruginosa, P.vulgaris, K.pneumoniae and S.enteritidis or the Gram-positive bacteria S.aureus, S.epidermidis and S.salivarius.

Heliothis virescens (taxid: 7102)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
322780423	122	hypothetical protein SINV_07163 [Solenop	0.845	0.942	0.632	2e-36
312382185	518	hypothetical protein AND_05223 [Anophele	0.838	0.220	0.587	6e-35
77415652	126	hypothetical protein [Glossina morsitans	0.882	0.952	0.573	2e-34
77415642	123	hypothetical protein [Biphyllus lunatus]	0.852	0.943	0.589	2e-34
215254084	129	putative chemosensory protein CSP8 [Nila	0.860	0.906	0.581	3e-34
194754369	126	GF12892 [Drosophila ananassae] gi|190620	0.838	0.904	0.564	3e-34
291088334	128	chemosensory protein 1 [Delia antiqua]	0.860	0.914	0.553	4e-34
113951689	127	chemosensory protein 11 precursor [Tribo	0.845	0.905	0.582	5e-34
113951691	127	chemosensory protein 12 precursor [Tribo	0.757	0.811	0.660	8e-34
383866119	125	PREDICTED: ejaculatory bulb-specific pro	0.75	0.816	0.656	8e-34

>gi|322780423|gb|EFZ09911.1| hypothetical protein SINV_07163 [Solenopsis invicta]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/117 (63%), Positives = 91/117 (77%), Gaps = 2/117 (1%)

Query: 8   AVGLFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELK 67
            + LFL V  VA   A EKY+TKYDN+DLD ILK+DRL  NY NCLLDKG C+PDG+EL+
Sbjct: 3   VLALFLLV--VAIALAEEKYSTKYDNIDLDTILKSDRLLKNYVNCLLDKGNCTPDGKELR 60

Query: 68  NKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKE 124
             LPDA+ TECK CSEKQKEG++K+ +YL++ KPE W +L+KK+DPNG Y AKY  E
Sbjct: 61  ETLPDALMTECKKCSEKQKEGTEKVIRYLVNKKPETWEQLKKKYDPNGQYTAKYLDE 117

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312382185|gb|EFR27728.1| hypothetical protein AND_05223 [Anopheles darlingi]

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 86/114 (75%)

Query: 11  LFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKL 70
           + +A+ L+A   A EKYTTKYD VDLD+ILK+DRLFNNYY CL+D G+C+PDG ELK  L
Sbjct: 397 VVVALALIATVAAQEKYTTKYDGVDLDEILKSDRLFNNYYKCLMDIGRCTPDGNELKRIL 456

Query: 71  PDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKE 124
           PDA+ T+C  CSEKQK G+ K+  YLIDN+  QW  L+KK+DP   Y  KY+++
Sbjct: 457 PDALKTDCAKCSEKQKSGTDKVINYLIDNRKSQWEALQKKYDPENVYVNKYRED 510

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|77415652|emb|CAJ01495.1| hypothetical protein [Glossina morsitans] gi|281426841|emb|CBA11327.1| chemosensory protein 1 [Glossina morsitans morsitans] gi|289740103|gb|ADD18799.1| ejaculatory bulb protein III [Glossina morsitans morsitans]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 93/122 (76%), Gaps = 2/122 (1%)

Query: 1   MFKLCSAAVGLFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCS 60
           M  L   AV   L+  +V G  A EKYTTKYD+VD+D++LK+DRLF NYYNCL+D+GKC+
Sbjct: 1   MKYLTIVAVIATLSAVVVMG--AEEKYTTKYDDVDVDEVLKSDRLFKNYYNCLIDQGKCT 58

Query: 61  PDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAK 120
           PD +ELK  LPDA+ TEC  CSEKQK+ S+K+ K+L+D+KPE+W  L+ K+DP G Y +K
Sbjct: 59  PDARELKKSLPDALQTECSKCSEKQKKTSEKVIKHLMDHKPEEWKVLQTKYDPEGIYYSK 118

Query: 121 YQ 122
           Y+
Sbjct: 119 YK 120

Source: Glossina morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|77415642|emb|CAJ01490.1| hypothetical protein [Biphyllus lunatus]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/117 (58%), Positives = 87/117 (74%), Gaps = 1/117 (0%)

Query: 8   AVGLFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELK 67
            + LF  +  V  +P  +KYTTKYDNVDLD+I+K+DRL  NY +CLL+KG CSPDG ELK
Sbjct: 5   VITLFALIAFVCARP-DDKYTTKYDNVDLDEIIKSDRLMKNYVSCLLEKGNCSPDGSELK 63

Query: 68  NKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKE 124
             LPDA+ T+C  CS+ QK GSKKI ++LIDNK + W ELE K+DP GTY+ KY+ E
Sbjct: 64  KHLPDALHTDCSKCSDTQKNGSKKIIRHLIDNKKDWWKELEAKYDPEGTYRKKYEAE 120

Source: Biphyllus lunatus

Species: Biphyllus lunatus

Genus: Biphyllus

Family: Biphyllidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|215254084|gb|ACJ64054.1| putative chemosensory protein CSP8 [Nilaparvata lugens]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/122 (58%), Positives = 98/122 (80%), Gaps = 5/122 (4%)

Query: 6   SAAVGLFLAV---QLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPD 62
           S+ + +F+AV     V  KPA +KYTTKYDN+DLD++L N RLF++Y+ CL+  GKC+PD
Sbjct: 2   SSTMLVFVAVLCFSAVLAKPA-DKYTTKYDNIDLDEVLSNQRLFDSYFKCLMG-GKCTPD 59

Query: 63  GQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQ 122
           GQEL++ LPDA+AT C+ CSEKQKEG++K+ K+LI+ KP ++AELEKK+DP GTY+ KY+
Sbjct: 60  GQELRDALPDALATACEKCSEKQKEGTEKVMKFLIEKKPTEFAELEKKYDPQGTYRQKYK 119

Query: 123 KE 124
            E
Sbjct: 120 AE 121

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194754369|ref|XP_001959468.1| GF12892 [Drosophila ananassae] gi|190620766|gb|EDV36290.1| GF12892 [Drosophila ananassae]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 90/117 (76%), Gaps = 3/117 (2%)

Query: 11  LFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKL 70
           L L V LVA   A EKYTTKYDN+D+D+ILK+DRLF NY+ CL+D GKC+P+G+ELK  L
Sbjct: 8   LVLGVALVA---AEEKYTTKYDNIDVDEILKSDRLFTNYFKCLIDAGKCTPEGRELKKSL 64

Query: 71  PDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKELSD 127
           PDA+ TEC  CSEKQ+E + K+ +++IDNKPE+W +L+ KFDP   Y  +Y+ + ++
Sbjct: 65  PDALKTECSKCSEKQRENTDKVIRFIIDNKPEEWKQLQAKFDPEDIYVKRYRSQAAE 121

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291088334|dbj|BAI82449.1| chemosensory protein 1 [Delia antiqua]

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/121 (55%), Positives = 91/121 (75%), Gaps = 4/121 (3%)

Query: 4   LCSAAVGLFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDG 63
           L +  V  F+A  ++A     +KYTTK+DN+D+D+ILK+DRLFNNYY CL D+GKC+PDG
Sbjct: 4   LFAVVVAAFMATIVLAD----DKYTTKFDNIDVDEILKSDRLFNNYYKCLTDEGKCTPDG 59

Query: 64  QELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQK 123
           +ELK  LPDA+ TEC  CS KQKE S+KI  ++++NKPE+W  L+ K+DP G Y  KY++
Sbjct: 60  RELKKNLPDALQTECSKCSAKQKESSEKILNFIVENKPEEWKVLQAKYDPEGVYITKYRE 119

Query: 124 E 124
           E
Sbjct: 120 E 120

Source: Delia antiqua

Species: Delia antiqua

Genus: Delia

Family: Anthomyiidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|113951689|ref|NP_001039279.1| chemosensory protein 11 precursor [Tribolium castaneum] gi|112031814|gb|ABH88184.1| chemosensory protein 11 [Tribolium castaneum] gi|270010975|gb|EFA07423.1| chemosensory protein 1 [Tribolium castaneum]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 85/115 (73%)

Query: 11  LFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKL 70
           LF  + + +      KYTTKYDNVDLD+I+K+DRL  NY NCLL+KGKC+PDG ELK  L
Sbjct: 8   LFFVIAIASSLAENSKYTTKYDNVDLDEIIKSDRLLKNYVNCLLEKGKCTPDGAELKRHL 67

Query: 71  PDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKEL 125
           PDA+ TEC  CSE QK GSKKI ++LID+K + W ELE+K+D  G Y+ KY+ E+
Sbjct: 68  PDALHTECSKCSETQKNGSKKIMRHLIDHKRDWWNELEEKYDKEGEYRKKYEAEI 122

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|113951691|ref|NP_001039280.1| chemosensory protein 12 precursor [Tribolium castaneum] gi|112031836|gb|ABH88185.1| chemosensory protein 12 [Tribolium castaneum] gi|270010974|gb|EFA07422.1| chemosensory protein 9 [Tribolium castaneum]

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 68/103 (66%), Positives = 81/103 (78%)

Query: 23  AGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCS 82
           A +KYTTKYDN+DL+QILK+DRL  NY NCLLD+GKCSPDGQELKN L DA+ T C  CS
Sbjct: 18  AADKYTTKYDNIDLNQILKSDRLLKNYVNCLLDRGKCSPDGQELKNNLADALQTSCSKCS 77

Query: 83  EKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKEL 125
           ++QK+GS+ I +YLI NK + W ELE K+DP G YK KY  EL
Sbjct: 78  QRQKDGSRTIIRYLIKNKRDWWNELEAKYDPTGIYKNKYADEL 120

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866119|ref|XP_003708519.1| PREDICTED: ejaculatory bulb-specific protein 3-like [Megachile rotundata]

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 67/102 (65%), Positives = 81/102 (79%)

Query: 23  AGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCS 82
           A EKYTTKYDN+DLDQILK+DRL NNY NCLLD G C+PDG+ELK  LPDA+A +C  CS
Sbjct: 16  ADEKYTTKYDNIDLDQILKSDRLLNNYVNCLLDLGSCTPDGKELKKSLPDALANDCSKCS 75

Query: 83  EKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKE 124
           EKQK GS+K+ +YLI+ +P+ W  L KK+DP G YK K+Q E
Sbjct: 76  EKQKTGSEKVIRYLINERPQLWDRLSKKYDPTGEYKVKFQNE 117

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
FB|FBgn0011695	126	PebIII "Ejaculatory bulb prote	0.838	0.904	0.537	1.2e-33
FB|FBgn0011293	155	a10 "antennal protein 10" [Dro	0.727	0.638	0.525	9.4e-27
FB|FBgn0035089	121	Phk-3 "Pherokine 3" [Drosophil	0.852	0.958	0.435	4.6e-25
FB|FBgn0050172	124	CG30172 [Drosophila melanogast	0.595	0.653	0.308	1.1e-09

FB|FBgn0011695 PebIII "Ejaculatory bulb protein III" [Drosophila melanogaster (taxid:7227)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 64/119 (53%), Positives = 91/119 (76%)

Query:    13 LAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPD 72
             L + LVA   A +KYTTKYDN+D+D+ILK+DRLF NY+ CL+D GKC+P+G+ELK  LPD
Sbjct:    10 LGLVLVA---AEDKYTTKYDNIDVDEILKSDRLFGNYFKCLVDNGKCTPEGRELKKSLPD 66

Query:    73 AIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQK--ELSDLK 129
             A+ TEC  CSEKQ++ + K+ +Y+I+NKPE+W +L+ K+DP+  Y  +Y+   E S +K
Sbjct:    67 ALKTECSKCSEKQRQNTDKVIRYIIENKPEEWKQLQAKYDPDEIYIKRYRATAEASGIK 125

GO:0007552 "metamorphosis" evidence=IEP

GO:0009615 "response to virus" evidence=IEP

GO:0005576 "extracellular region" evidence=ISM;IDA

FB|FBgn0011293 a10 "antennal protein 10" [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 52/99 (52%), Positives = 70/99 (70%)

Query:    25 EKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEK 84
             + Y  K+DNVDLD+IL  +RL  NY  CL   G C+PD + LK  LPDAI T+C  C+EK
Sbjct:    48 QAYDDKFDNVDLDEILNQERLLINYIKCLEGTGPCTPDAKMLKEILPDAIQTDCTKCTEK 107

Query:    85 QKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQK 123
             Q+ G++K+ ++LIDN+P  W  LEK +DP GTY+ KYQ+
Sbjct:   108 QRYGAEKVTRHLIDNRPTDWERLEKIYDPEGTYRIKYQE 146

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0005550 "pheromone binding" evidence=NAS

GO:0005549 "odorant binding" evidence=NAS

GO:0005576 "extracellular region" evidence=ISM

FB|FBgn0035089 Phk-3 "Pherokine 3" [Drosophila melanogaster (taxid:7227)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 51/117 (43%), Positives = 78/117 (66%)

Query:     6 SAAVGLFLAVQLVAGKPAGEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQE 65
             S A+   + V L A  P  + YT KYD+V++D++L N+R+  NY  CL+DKG C+ +G+E
Sbjct:     4 SLALVFCVCVGLAAAAPE-KTYTNKYDSVNVDEVLGNNRVLGNYLKCLMDKGPCTAEGRE 62

Query:    66 LKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQ 122
             LK  LPDA+ ++C  C+E Q++ S+K+  YL  NK  +W  L  K+DP G Y+AK++
Sbjct:    63 LKRLLPDALHSDCSKCTEVQRKNSQKVINYLRANKAGEWKLLLNKYDPQGIYRAKHE 119

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS;NAS

GO:0019992 "diacylglycerol binding" evidence=ISS

GO:0007362 "terminal region determination" evidence=NAS

GO:0004672 "protein kinase activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0007552 "metamorphosis" evidence=IEP

GO:0009617 "response to bacterium" evidence=IEP

GO:0005576 "extracellular region" evidence=ISM

FB|FBgn0050172 CG30172 [Drosophila melanogaster (taxid:7227)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/81 (30%), Positives = 48/81 (59%)

Query:    32 DNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQKEGSKK 91
             D  +++++L N  + +    C+L K +C   G +LK  LP+ I  +C++CS +Q + ++K
Sbjct:    42 DERNINKLLNNQVVVSRQIMCILGKSECDQLGLQLKAALPEVITRKCRNCSPQQAQKAQK 101

Query:    92 IFKYLIDNKPEQWAELEKKFD 112
             +  +L    P+ WA L +K+D
Sbjct:   102 LTTFLQTRYPDVWAMLLRKYD 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.134   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      136       136   0.00091  102 3  11 23  0.49    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  146 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:04
  No. of threads or processors used:  24
  Search cpu time:  18.72u 0.10s 18.82t   Elapsed:  00:00:16
  Total cpu time:  18.72u 0.10s 18.82t   Elapsed:  00:00:20
  Start:  Thu Aug 15 14:02:58 2013   End:  Thu Aug 15 14:03:18 2013

GO:0005576 "extracellular region" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9W1C9	PEB3_DROME	No assigned EC number	0.5714	0.7205	0.7777	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	136
pfam03392	95	pfam03392, OS-D, Insect pheromone-binding family,	2e-53

>gnl|CDD|146171 pfam03392, OS-D, Insect pheromone-binding family, A10/OS-D

 Score =  163 bits (414), Expect = 2e-53
 Identities = 61/95 (64%), Positives = 77/95 (81%)

Query: 27  YTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQK 86
           YTTKYDN+DLD+IL NDRL  NY  CLLDKG C+P+G+ELK  LPDA+ T+C  C+EKQK
Sbjct: 1   YTTKYDNIDLDEILNNDRLLKNYVKCLLDKGPCTPEGKELKKVLPDALETDCAKCTEKQK 60

Query: 87  EGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKY 121
           EG++K+ K+LI+NKPE+W EL  K+DP G Y+ KY
Sbjct: 61  EGARKVIKFLIENKPEEWKELVAKYDPEGEYRKKY 95

Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PF03392	95	OS-D: Insect pheromone-binding family, A10/OS-D; I	100.0
PF04030	259	ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I	89.36
PF06530	125	Phage_antitermQ: Phage antitermination protein Q;	80.39

>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons

Probab=100.00  E-value=1.7e-47  Score=272.08  Aligned_cols=95  Identities=57%  Similarity=1.158  Sum_probs=90.4

Q ss_pred             cCCcCccCCHHHHhcCHHHHHHHhhhhcCCCCCChhHHHHHhhhHHHHHhcCccCCHHHHhhHHHHHHHHHhcChHHHHH
Q psy4017          27 YTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAE  106 (136)
Q Consensus        27 Y~~~~D~iDid~iL~N~rl~~~y~~ClLdkgpCt~~gk~lK~~lpeal~t~C~KCT~kQK~~~~kvi~~l~~~~P~~w~~  106 (136)
                      |+++||||||++||+|+|++++|++||||+|||||+|++||++|||||+|+|+||||+||+++++|++||++++|++|++
T Consensus         1 Y~~~yD~iDvd~iL~N~rl~~~y~~ClldkgpCt~~~~~lK~~ipeal~t~C~KCt~kQK~~~~kv~~~l~~~~P~~w~~   80 (95)
T PF03392_consen    1 YTTKYDNIDVDEILKNDRLLKSYIDCLLDKGPCTPEGKELKKVIPEALKTNCAKCTPKQKENARKVIKFLKKNYPDEWEE   80 (95)
T ss_dssp             -HCTTTSSCHHHHHH-HHHHHHHHHHHTSSSTSHHHHHHHHHHHHHHHHCTTTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccccCHHHHHcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCChhhHHHH
Q psy4017         107 LEKKFDPNGTYKAKY  121 (136)
Q Consensus       107 l~~KyDP~~~y~~~~  121 (136)
                      |++||||+|+|+++|
T Consensus        81 l~~KyDp~~~y~~ky   95 (95)
T PF03392_consen   81 LVKKYDPEGKYRKKY   95 (95)
T ss_dssp             HHHHHTTT-TTHHHH
T ss_pred             HHHHHCCCcchhhcC
Confidence            999999999999987

The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.

>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1

Probab=89.36  E-value=0.41  Score=38.30  Aligned_cols=28  Identities=29%  Similarity=0.630  Sum_probs=20.5

Q ss_pred             HHhcCh--HHHHHHHHhhCCChhhHHHHHH
Q psy4017          96 LIDNKP--EQWAELEKKFDPNGTYKAKYQK  123 (136)
Q Consensus        96 l~~~~P--~~w~~l~~KyDP~~~y~~~~~~  123 (136)
                      +.+.||  ++|.++.+++||+|.+...|.+
T Consensus       228 l~~~Yp~~~~F~~~r~~~DP~g~F~n~~~~  257 (259)
T PF04030_consen  228 LRKLYPRLDDFLAVRKKLDPQGVFLNDYLR  257 (259)
T ss_dssp             HHHT-TTHHHHHHHHHHH-TT-TT--HHHH
T ss_pred             HHHHCcCHHHHHHHHHHhCCCCCCCCHhhh
Confidence            778888  8999999999999999998864

1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.

>PF06530 Phage_antitermQ: Phage antitermination protein Q; InterPro: IPR010534 This entry is represented by Bacteriophage 933W, GpQ

Probab=80.39  E-value=2.6  Score=30.85  Aligned_cols=65  Identities=18%  Similarity=0.238  Sum_probs=50.6

Q ss_pred             HHHHhhhhcCC---CCCChhHHHHHhhhHHHHHhcCccCCHHHHhhHHHHHHHHHhcChHHHHHHHHhh
Q psy4017          46 FNNYYNCLLDK---GKCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWAELEKKF  111 (136)
Q Consensus        46 ~~~y~~ClLdk---gpCt~~gk~lK~~lpeal~t~C~KCT~kQK~~~~kvi~~l~~~~P~~w~~l~~Ky  111 (136)
                      +..+=....+.   -..+|....|+.++|..-.... -||+..=-.+...+..|+++.|+.++-|...|
T Consensus         8 Le~WG~W~~~~~~~~~~s~i~a~f~~~~p~~~~~r~-~csDDdgl~Id~~v~~L~~~~~~~~~ll~~~Y   75 (125)
T PF06530_consen    8 LERWGAWVRSGRSGVDYSPIAAGFKGVLPSSSKSRP-SCSDDDGLLIDRCVARLKKRDPEEYDLLILYY   75 (125)
T ss_pred             HHHhhHHHhCCCCCCCcccHHHHHhcCCCCCCCCCc-eechHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            34444444432   2467788888999997554444 49999999999999999999999999999988

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage antitermination protein Q and related bacterial sequences. Phage 993W gene Q encodes a phage-specific positive regulator of late gene expression, thought, by analogy to the corresponding gene of phage lambda, to be a transcription antiterminator. GpQ positively regulates expression of the phage late gene operons. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [, ].; GO: 0003677 DNA binding, 0060567 negative regulation of transcription termination, DNA-dependent

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
2gvs_A	109	Nmr Solution Structure Of Cspsg4 Length = 109		2e-31
1kx8_A	112	Antennal Chemosensory Protein A6 From Mamestra Bras		4e-26
2jnt_A	108	Structure Of Bombyx Mori Chemosensory Protein 1 In		5e-23

>pdb|2GVS|A Chain A, Nmr Solution Structure Of Cspsg4 Length = 109

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 81/100 (81%), Gaps = 2/100 (2%)
Query: 25  EKYTTKYDNVDLDQILKNDRLFNNYYNCLL--DKGKCSPDGQELKNKLPDAIATECKSCS 82
           EKYTTKYDNV+LD+IL NDRL N Y  CLL  D+  C+ DG+ELK+ +PDA++ EC  C+
Sbjct: 2   EKYTTKYDNVNLDEILANDRLLNKYVQCLLEDDESNCTADGKELKSVIPDALSNECAKCN 61
Query: 83  EKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQ 122
           EKQKEG+KK+ K+LI++KP+ WA+L+ K+DP+GTY  KY+
Sbjct: 62  EKQKEGTKKVLKHLINHKPDVWAQLKAKYDPDGTYSKKYE 101

>pdb|1KX8|A Chain A, Antennal Chemosensory Protein A6 From Mamestra Brassicae, Tetragonal Form Length = 112

Iteration: 1
 Score =  113 bits (282), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 72/98 (73%)
Query: 25  EKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEK 84
           +KYT KYDN++LD+IL N RL   Y NC++++GKCSP+G+ELK  L DAI   CK C+E 
Sbjct: 2   DKYTDKYDNINLDEILANKRLLVAYVNCVMERGKCSPEGKELKEHLQDAIENGCKKCTEN 61
Query: 85  QKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQ 122
           Q++G+ ++ ++LI N+ E W EL  K+DP G ++ KY+
Sbjct: 62  QEKGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKKYE 99

>pdb|2JNT|A Chain A, Structure Of Bombyx Mori Chemosensory Protein 1 In Solution Length = 108

Iteration: 1
 Score =  102 bits (255), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 69/96 (71%)
Query: 27  YTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQK 86
           YT KYD ++L +IL+N RL  +Y +C+L KGKC+P+G+ELK+ L +A+ T C+ C+E Q+
Sbjct: 1   YTDKYDKINLQEILENKRLLESYMDCVLGKGKCTPEGKELKDHLQEALETGCEKCTEAQE 60
Query: 87  EGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQ 122
           +G++    YLI N+ E W EL   FDP+G ++ KY+
Sbjct: 61  KGAETSIDYLIKNELEIWKELTAHFDPDGKWRKKYE 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
1k19_A	112	Chemosensory protein CSP2; pheromone, lipid transp	5e-44
2gvs_A	109	Chemosensory protein CSP-SG4; alpha-coil, lipid bi	1e-41

>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A Length = 112

 Score =  139 bits (351), Expect = 5e-44
 Identities = 49/101 (48%), Positives = 72/101 (71%)

Query: 25  EKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEK 84
           +KYT KYDN++LD+IL N RL   Y NC++++GKCSP+G+ELK  L DAI   CK C+E 
Sbjct: 2   DKYTDKYDNINLDEILANKRLLVAYVNCVMERGKCSPEGKELKEHLQDAIENGCKKCTEN 61

Query: 85  QKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKEL 125
           Q++G+ ++ ++LI N+ E W EL  K+DP G ++ KY+   
Sbjct: 62  QEKGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKKYEDRA 102

>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria} Length = 109

 Score =  133 bits (336), Expect = 1e-41
 Identities = 61/107 (57%), Positives = 83/107 (77%), Gaps = 2/107 (1%)

Query: 25  EKYTTKYDNVDLDQILKNDRLFNNYYNCLL--DKGKCSPDGQELKNKLPDAIATECKSCS 82
           EKYTTKYDNV+LD+IL NDRL N Y  CLL  D+  C+ DG+ELK+ +PDA++ EC  C+
Sbjct: 2   EKYTTKYDNVNLDEILANDRLLNKYVQCLLEDDESNCTADGKELKSVIPDALSNECAKCN 61

Query: 83  EKQKEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKELSDLK 129
           EKQKEG+KK+ K+LI++KP+ WA+L+ K+DP+GTY  KY+    +L 
Sbjct: 62  EKQKEGTKKVLKHLINHKPDVWAQLKAKYDPDGTYSKKYEDREKELH 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
1k19_A	112	Chemosensory protein CSP2; pheromone, lipid transp	100.0
2gvs_A	109	Chemosensory protein CSP-SG4; alpha-coil, lipid bi	100.0
2vfr_A	422	Xylitol oxidase, alditol oxidase; FAD, sugar, poly	82.82

>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A

Probab=100.00  E-value=3.7e-52  Score=302.80  Aligned_cols=112  Identities=45%  Similarity=0.889  Sum_probs=109.7

Q ss_pred             CCccCCcCccCCHHHHhcCHHHHHHHhhhhcCCCCCChhHHHHHhhhHHHHHhcCccCCHHHHhhHHHHHHHHHhcChHH
Q psy4017          24 GEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQ  103 (136)
Q Consensus        24 ~~~Y~~~~D~iDid~iL~N~rl~~~y~~ClLdkgpCt~~gk~lK~~lpeal~t~C~KCT~kQK~~~~kvi~~l~~~~P~~  103 (136)
                      ++.|+++||||||++||+|+||+++|++||||+|||||+|++||++|||||+|+|+||||+||+++++|++||++|+|++
T Consensus         1 ee~Yt~kyDniDvd~IL~n~rll~~y~~Clld~gpCtpegk~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l~~n~P~~   80 (112)
T 1k19_A            1 EDKYTDKYDNINLDEILANKRLLVAYVNCVMERGKCSPEGKELKEHLQDAIENGCKKCTENQEKGAYRVIEHLIKNEIEI   80 (112)
T ss_dssp             CCCCCSSSSCSSHHHHHSCHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHTTTTCTTSCSHHHHHHHHHHHHHHHHHSCH
T ss_pred             CCcccccccccCHHHHHcCHHHHHHHHhHHhcCCCCCHHHHHHHHHhHHHHhccCCCCCHHHHHHHHHHHHHHHHcChHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCChhhHHHHHHHHhhcCCCCCCC
Q psy4017         104 WAELEKKFDPNGTYKAKYQKELSDLKAGKPVK  135 (136)
Q Consensus       104 w~~l~~KyDP~~~y~~~~~~~l~~~~~~~~~~  135 (136)
                      |++|++||||+|+|+++|++++++.|+.+|++
T Consensus        81 W~~L~~KyDP~g~y~~~y~~~~~~~g~~~~~~  112 (112)
T 1k19_A           81 WRELTAKYDPTGNWRKKYEDRAKAAGIVIPEE  112 (112)
T ss_dssp             HHHHHHSSTTTCSSHHHHHHHHHHHCCCCCCC
T ss_pred             HHHHHHHHCCCchHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999999999999999999985

>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}

Probab=100.00  E-value=3.6e-49  Score=285.89  Aligned_cols=105  Identities=57%  Similarity=1.086  Sum_probs=101.6

Q ss_pred             CCccCCcCccCCHHHHhcCHHHHHHHhhhhcCCC--CCChhHHHHHhhhHHHHHhcCccCCHHHHhhHHHHHHHHHhcCh
Q psy4017          24 GEKYTTKYDNVDLDQILKNDRLFNNYYNCLLDKG--KCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKP  101 (136)
Q Consensus        24 ~~~Y~~~~D~iDid~iL~N~rl~~~y~~ClLdkg--pCt~~gk~lK~~lpeal~t~C~KCT~kQK~~~~kvi~~l~~~~P  101 (136)
                      ++.|+++||||||++||+|+||+++|++||||+|  ||||+|++||++|||||+|+|+||||+||+++++|++||++|+|
T Consensus         1 ee~Yt~kyDniDvd~IL~n~rll~~y~~Clld~g~~pCtpegk~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l~~n~P   80 (109)
T 2gvs_A            1 EEKYTTKYDNVNLDEILANDRLLNKYVQCLLEDDESNCTADGKELKSVIPDALSNECAKCNEKQKEGTKKVLKHLINHKP   80 (109)
T ss_dssp             CCCCCSCSSSCCHHHHHHCHHHHHHHHHHHHSSCCTTCCTTHHHHHHHTTHHHHSTTTTSCHHHHHHHHHHHHHHHHHCH
T ss_pred             CCcccccccccCHHHHHcCHHHHHHHHhHHhcCCCCCCCHHHHHHHHHhHHHHhccCCCCCHHHHHHHHHHHHHHHHcCh
Confidence            3579999999999999999999999999999999  99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCChhhHHHHHHHHhhc
Q psy4017         102 EQWAELEKKFDPNGTYKAKYQKELSDL  128 (136)
Q Consensus       102 ~~w~~l~~KyDP~~~y~~~~~~~l~~~  128 (136)
                      ++|++|++||||+|+|+++|++++++.
T Consensus        81 ~~W~~L~~KyDP~g~y~~ky~~~~~~~  107 (109)
T 2gvs_A           81 DVWAQLKAKYDPDGTYSKKYEDREKEL  107 (109)
T ss_dssp             HHHHHHHHHHCTTCTTTHHHHTTTCCS
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHHc
Confidence            999999999999999999999988653

>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*

Probab=82.82  E-value=0.66  Score=38.50  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=26.9

Q ss_pred             HHHHhcCh--HHHHHHHHhhCCChhhHHHHHHHH
Q psy4017          94 KYLIDNKP--EQWAELEKKFDPNGTYKAKYQKEL  125 (136)
Q Consensus        94 ~~l~~~~P--~~w~~l~~KyDP~~~y~~~~~~~l  125 (136)
                      +.+.+.||  +.|.++.++|||+|.+...|.+.+
T Consensus       386 ~~~~~~Yp~~~~f~~vk~~~DP~g~f~n~~~~r~  419 (422)
T 2vfr_A          386 GELRALYPRLADFGALAGALDPAGKFTNAFVRGV  419 (422)
T ss_dssp             HHHHTTCTTHHHHHHHHHHHCTTCTTCCHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHhCCCCccCCHHHHHh
Confidence            56777888  589999999999999998886654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1n8va_	101	a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage	4e-48

>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]} Length = 101

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Chemosensory protein Csp2
family: Chemosensory protein Csp2
domain: Chemosensory protein Csp2
species: Cabbage moth (Mamestra brassicae) [TaxId: 55057]

 Score =  147 bits (374), Expect = 4e-48
 Identities = 49/100 (49%), Positives = 71/100 (71%)

Query: 26  KYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQ 85
           KYT KYDN++LD+IL N RL   Y NC++++GKCSP+G+ELK  L DAI   CK C+E Q
Sbjct: 1   KYTDKYDNINLDEILANKRLLVAYVNCVMERGKCSPEGKELKEHLQDAIENGCKKCTENQ 60

Query: 86  KEGSKKIFKYLIDNKPEQWAELEKKFDPNGTYKAKYQKEL 125
           ++G+ ++ ++LI N+ E W EL  K+DP G ++ KY+   
Sbjct: 61  EKGAYRVIEHLIKNEIEIWRELTAKYDPTGNWRKKYEDRA 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1n8va_	101	Chemosensory protein Csp2 {Cabbage moth (Mamestra	100.0

>d1n8va_ a.118.21.1 (A:) Chemosensory protein Csp2 {Cabbage moth (Mamestra brassicae) [TaxId: 55057]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Chemosensory protein Csp2
family: Chemosensory protein Csp2
domain: Chemosensory protein Csp2
species: Cabbage moth (Mamestra brassicae) [TaxId: 55057]

Probab=100.00  E-value=1.2e-49  Score=283.25  Aligned_cols=100  Identities=49%  Similarity=0.994  Sum_probs=98.5

Q ss_pred             ccCCcCccCCHHHHhcCHHHHHHHhhhhcCCCCCChhHHHHHhhhHHHHHhcCccCCHHHHhhHHHHHHHHHhcChHHHH
Q psy4017          26 KYTTKYDNVDLDQILKNDRLFNNYYNCLLDKGKCSPDGQELKNKLPDAIATECKSCSEKQKEGSKKIFKYLIDNKPEQWA  105 (136)
Q Consensus        26 ~Y~~~~D~iDid~iL~N~rl~~~y~~ClLdkgpCt~~gk~lK~~lpeal~t~C~KCT~kQK~~~~kvi~~l~~~~P~~w~  105 (136)
                      +|+++||||||++||+|+|++++|++||||+|||||+|++||++|||||+|+|+||||+||+++++|++||++|+|++|+
T Consensus         1 kY~~~yD~iDvd~IL~n~rll~~y~~Clld~gpCt~egk~lK~~lPeal~t~C~kCT~kQK~~~~kvi~~l~~~~p~~w~   80 (101)
T d1n8va_           1 KYTDKYDNINLDEILANKRLLVAYVNCVMERGKCSPEGKELKEHLQDAIENGCKKCTENQEKGAYRVIEHLIKNEIEIWR   80 (101)
T ss_dssp             CCCCTTTTSCHHHHHTCHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             CCCCcccccCHHHHHCCHHHHHHHHhHHccCCCCCHHHHHHHHHhHHHHHccccCCCHHHHHHHHHHHHHHHHcCcHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCChhhHHHHHHHH
Q psy4017         106 ELEKKFDPNGTYKAKYQKEL  125 (136)
Q Consensus       106 ~l~~KyDP~~~y~~~~~~~l  125 (136)
                      +|++||||+|+|+++|++.+
T Consensus        81 ~l~~KYDP~g~y~~k~~~~~  100 (101)
T d1n8va_          81 ELTAKYDPTGNWRKKYEDRA  100 (101)
T ss_dssp             HHHHHHCTTCSSHHHHHHHH
T ss_pred             HHHHHHCcCchHHHHHHHHh
Confidence            99999999999999999876