Diaphorina citri psyllid: psy4154

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
KNKCYIFANFSINFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEQTSSCSPGHVPLMSWA
ccHHHHHHHHccccccccccccccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHHHcccccccHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccc
***CYIFANFSINFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVA***NAVHQLAEDIGKKL******************MTEI**************************KLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSA*V******VH****************************************V******
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KNKCYIFANFSINFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEExxxxxxxxxxxxxxxxxxxxxYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEQTSSCSPGHVPLMSWA

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Putative RNA-binding protein Luc7-like 2 May bind to RNA via its Arg/Ser-rich domain.confidentQ7TNC4
U1 snRNP-associated protein usp106 Component of the U1 snRNP particle, which recognizes and binds the 5'-splice site of pre-mRNA. Together with other non-snRNP factors, U1 snRNP forms the spliceosomal commitment complex, that targets pre-mRNA to the splicing pathway.confidentQ9USM4
Putative RNA-binding protein Luc7-like 2 May bind to RNA via its Arg/Ser-rich domain.confidentQ9Y383

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0045843 [BP]negative regulation of striated muscle tissue developmentprobableGO:0051093, GO:0016202, GO:1901862, GO:0050793, GO:0048635, GO:0048634, GO:0008150, GO:0065007, GO:2000026, GO:0051239, GO:0048519, GO:1901861, GO:0050789
GO:0071011 [CC]precatalytic spliceosomeprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0019899 [MF]enzyme bindingprobableGO:0003674, GO:0005488, GO:0005515
GO:0031981 [CC]nuclear lumenprobableGO:0005575, GO:0043231, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422
GO:0050733 [MF]RS domain bindingprobableGO:0003674, GO:0019904, GO:0005515, GO:0005488
GO:0005737 [CC]cytoplasmprobableGO:0044424, GO:0005575, GO:0044464, GO:0005623, GO:0005622
GO:0005886 [CC]plasma membraneprobableGO:0005575, GO:0044464, GO:0016020, GO:0071944, GO:0005623

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
3vkg, chain A probable Alignment | Template Structure