Psyllid ID: psy4154

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
KNKCYIFANFSINFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEQTSSCSPGHVPLMSWA
Secondary Structure (PSIPRED)
ccHHHHHHHHccccccccccccccccccccHHHHHcccccHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEcccccccccccccccHHHHHHHHHcccccHHHHccHHcccccccccHHHHHHHHHHHHHcccccccHHHcccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccEEEEHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
knkcyifanfsinfpgesnkynvkffdskvcksflltccpheilsstrmdlgecpkihdLALRADYEKasknrdyyydidrmdlgecpkihdLALRADYEKasknrdyyydIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEdtyrnsmpassyqqqKLRVCEVCSAYlgihdndrrladhfggklHLGFIKIREKLAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTeqtsscspghvplmswa
Flexible Loop (DISEMBL)
knkcyifanfsinfpgesnKYNVKFFDSKVCKSFLLTCCPHEILsstrmdlgecPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAeaedtyrnsmpassyqqqkLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMteqtsscspghvplmswa
Low Complexity Region (SEG)
KNKCYIFANFSINFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEQTSSCSPGHVPLMSWA
Disordered region (IsUnstruct)
***CYIFANFSINFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVA***NAVHQLA**I****************************************************KLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSA*V******VH***********************************************
Disordered Region (DISOPRED)
***CYIF*N***************FFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEK*******YYDIDRMDLGECPKIHDLA*************YYYDIDAMEHLQAFISDCDRRTE****************************EDIGKKL******************MTEI*****************************VCEVCSAYLGIHDNDRRL**HFGGKLHLGFIKIREKLAE************************************************************************************V******
Disordered Region (DISEMBL)
KNKCYIFANFSINFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKK*******************QKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLM********PGHVPLMSWA
Disordered Region (DISPRO)
KNKCYIFANFSINFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKL**EQTSSCSP*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KNKCYIFANFSINFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEExxxxxxxxxxxxxxxxxxxxxYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEQTSSCSPGHVPLMSWA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
Q9Y383	392	Putative RNA-binding prot	yes	N/A	0.604	0.533	0.623	8e-83
Q7TNC4	392	Putative RNA-binding prot	yes	N/A	0.604	0.533	0.619	1e-82
Q9NQ29	371	Putative RNA-binding prot	no	N/A	0.604	0.563	0.619	1e-81
Q9CYI4	371	Putative RNA-binding prot	no	N/A	0.604	0.563	0.619	1e-81
Q9USM4	264	U1 snRNP-associated prote	yes	N/A	0.612	0.803	0.329	2e-30
Q09217	313	Uncharacterized protein B	yes	N/A	0.572	0.632	0.322	2e-29
Q5SUF2	432	Luc7-like protein 3 OS=Mu	no	N/A	0.644	0.516	0.292	6e-24
Q3SX41	432	Luc7-like protein 3 OS=Bo	no	N/A	0.644	0.516	0.296	6e-24
Q5R8W6	432	Luc7-like protein 3 OS=Po	yes	N/A	0.644	0.516	0.292	8e-24
O95232	432	Luc7-like protein 3 OS=Ho	no	N/A	0.644	0.516	0.292	8e-24

>sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2

 Score =  307 bits (786), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 151/242 (62%), Positives = 181/242 (74%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           G++ +  +KF D +VCKS LL CCPH++LS TRMD                         
Sbjct: 21  GDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGEC K+HDLALRADYE ASK +D+++++DAM+HLQ+FI+DCDRRTE+AK+R
Sbjct: 56  --------LGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE +SAEVA KA  VH+L E+IGK LAK E+LGAEG VEES K+M E+E  R KK 
Sbjct: 108 LAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKR 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE+ YRNSMPASS+QQQKLRVCEVCSAYLG+HDNDRRLADHFGGKLHLGFI+IREKL E
Sbjct: 168 EAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEE 227

Query: 256 LQ 257
           L+
Sbjct: 228 LK 229

May bind to RNA via its Arg/Ser-rich domain.
Homo sapiens (taxid: 9606)

>sp|Q7TNC4|LC7L2_MOUSE Putative RNA-binding protein Luc7-like 2 OS=Mus musculus GN=Luc7l2 PE=1 SV=1

 Score =  306 bits (785), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 150/242 (61%), Positives = 181/242 (74%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           G++ +  +KF D +VCKS LL CCPH++LS TRMD                         
Sbjct: 21  GDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGEC K+HDLALRADYE ASK +D+++++DAM+HLQ+FI+DCDRRTE++K+R
Sbjct: 56  --------LGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVSKKR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE +SAEVA KA  VH+L E+IGK LAK E+LGAEG VEES K+M E+E  R KK 
Sbjct: 108 LAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKR 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE+ YRNSMPASS+QQQKLRVCEVCSAYLG+HDNDRRLADHFGGKLHLGFI+IREKL E
Sbjct: 168 EAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEE 227

Query: 256 LQ 257
           L+
Sbjct: 228 LK 229

May bind to RNA via its Arg/Ser-rich domain.

Mus musculus (taxid: 10090)

>sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L PE=1 SV=1

 Score =  303 bits (777), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/242 (61%), Positives = 181/242 (74%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           G+  +  VKF D +VCKS LL CCPH+IL+ TRMD                         
Sbjct: 21  GDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGEC KIHDLALRADYE ASK RD ++++DAM+HL++FI++CDRRTELAK+R
Sbjct: 56  --------LGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE +SAEV+ KA  VH+L E+IGK LAKAE+LGAEG V+ES K++ E+E +R KK 
Sbjct: 108 LAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKK 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE+ YRNSMPASS+QQQKLRVCEVCSAYLG+HDNDRRLADHFGGKLHLGFI+IREKL +
Sbjct: 168 EAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQ 227

Query: 256 LQ 257
           L+
Sbjct: 228 LR 229

May bind to RNA via its Arg/Ser-rich domain.

Homo sapiens (taxid: 9606)

>sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1 OS=Mus musculus GN=Luc7l PE=2 SV=2

 Score =  303 bits (776), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/242 (61%), Positives = 181/242 (74%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           G+  +  VKF D +VCKS LL CCPH+IL+ TRMD                         
Sbjct: 21  GDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGEC KIHDLALRADYE ASK RD ++++DAM+HL++FI++CDRRTELAK+R
Sbjct: 56  --------LGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE +SAEV+ KA  VH+L E+IGK LAKAE+LGAEG V+ES K++ E+E +R KK 
Sbjct: 108 LAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKK 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE+ YRNSMPASS+QQQKLRVCEVCSAYLG+HDNDRRLADHFGGKLHLGFI+IREKL +
Sbjct: 168 EAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQ 227

Query: 256 LQ 257
           L+
Sbjct: 228 LR 229

May bind to RNA via its Arg/Ser-rich domain.

Mus musculus (taxid: 10090)

>sp|Q9USM4|LUC7_SCHPO U1 snRNP-associated protein usp106 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp106 PE=1 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 125/249 (50%), Gaps = 37/249 (14%)

Query: 13  NFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKN 72
           N    +++  V F D KVC+SFL   CPH+I ++T+MDLG CPKIH   L++DYE+AS +
Sbjct: 16  NLSNFTSRGLVHFTDRKVCRSFLCGICPHDIFTNTKMDLGPCPKIHSDKLKSDYERASYS 75

Query: 73  RDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELA 132
            D                                 Y Y+ D +E L+  + DC++R ++A
Sbjct: 76  HD---------------------------------YGYEWDYLEDLERHVDDCNKRIDIA 102

Query: 133 KQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRK 192
            +   E  +     + E    +      I   + + E L     V +++K   E+  L+ 
Sbjct: 103 -EARREKTKEEEERIDELMRDIIHTDHSIEVIITEMEALAKRKLVNDAVKHFIELNRLKT 161

Query: 193 KKAEAED--TYRNSMPA-SSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKI 249
            + E  D     N +P+ +S   QKL+VC++CSAYL   DNDRRLADHF GK+HLG+  +
Sbjct: 162 YRKELYDEVISMNEIPSQASTTHQKLQVCDICSAYLSRLDNDRRLADHFSGKMHLGYAML 221

Query: 250 REKLAELQA 258
           R    +L+A
Sbjct: 222 RNIARDLRA 230

Component of the U1 snRNP particle, which recognizes and binds the 5'-splice site of pre-mRNA. Together with other non-snRNP factors, U1 snRNP forms the spliceosomal commitment complex, that targets pre-mRNA to the splicing pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q09217|YP68_CAEEL Uncharacterized protein B0495.8 OS=Caenorhabditis elegans GN=B0495.8 PE=2 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 38/236 (16%)

Query: 20  KYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDI 79
           K ++ F    VC++FLL  CPH+++  +R+                              
Sbjct: 23  KPSMPFDHHSVCRAFLLGVCPHDMVPDSRL------------------------------ 52

Query: 80  DRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLET 139
              ++  C K+H+ A +ADYE+A K +D++YD+DA E ++  +   D      +++L + 
Sbjct: 53  --QNVVSCRKVHEPAHKADYERAQKEKDHFYDVDAFEIIEHAVHLVDIEIAKVREKLEDD 110

Query: 140 QEVLSAEVAE-KANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAE 198
            +  +++ A+ KA  V ++ E I K +   E+LG EG +EES+KL   +E+LR+K  E E
Sbjct: 111 VKTQTSQAADSKAKQVAEIEEKIAKNVDDIEKLGNEGKIEESMKLHKYVEELREKIQEIE 170

Query: 199 DT---YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIRE 251
           D+    + + P S+    KLRVCE C A L I D++ R+ADH+ GK+H+G ++ RE
Sbjct: 171 DSQTEVKTAGPGSN--SAKLRVCEDCGAQLNITDHESRIADHYNGKMHIGMVETRE 224

Caenorhabditis elegans (taxid: 6239)

>sp|Q5SUF2|LC7L3_MOUSE Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1 SV=1

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 40/263 (15%)

Query: 13  NFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKN 72
           N   +  + NV++    VCK +L   CP E+ ++TR DL                     
Sbjct: 17  NLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDL--------------------- 55

Query: 73  RDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELA 132
                       G C KIHD  LR  YEK+S+     Y+ D + +LQ+ +++ +RR    
Sbjct: 56  ------------GPCEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRG 103

Query: 133 KQRLLETQEVLSAEVA----EKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIE 188
             RL  +Q   S+  A    +    +  L + I   L + EELG+EG VEE+  +M  +E
Sbjct: 104 HARLALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVE 163

Query: 189 DLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIK 248
            L++++     T  +++ + + Q++++ VCEVC A+L + D   R+ DH  GK H+G+ K
Sbjct: 164 QLKEERELLRSTT-STIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAK 222

Query: 249 IREKLAELQAMEHLQAFISDCDR 271
           I+  + EL+  E L+    + DR
Sbjct: 223 IKATVEELK--EKLRKRTEEPDR 243

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Mus musculus (taxid: 10090)

>sp|Q3SX41|LC7L3_BOVIN Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1

 Score =  111 bits (278), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 129/263 (49%), Gaps = 40/263 (15%)

Query: 13  NFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKN 72
           N   +  + NV++    VCK +L   CP E+ ++TR DLG  P                 
Sbjct: 17  NLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDLG--P----------------- 57

Query: 73  RDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELA 132
                         C KIHD  LR  YEK+S+     Y+ D + +LQ+ +++ +RR    
Sbjct: 58  --------------CEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRG 103

Query: 133 KQRLLETQEVLSAEVA----EKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIE 188
             RL  +Q   S+  A    +    +  L + I   L + EELG+EG VEE+  +M  +E
Sbjct: 104 HARLALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVE 163

Query: 189 DLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIK 248
            L++++     T  +++ + + Q++++ VCEVC A+L + D   R+ DH  GK H+G+ K
Sbjct: 164 QLKEERELLRSTT-STIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAK 222

Query: 249 IREKLAELQAMEHLQAFISDCDR 271
           I+  + EL+  E L+    + DR
Sbjct: 223 IKATVEELK--EKLRKRTEEPDR 243

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Bos taurus (taxid: 9913)

>sp|Q5R8W6|LC7L3_PONAB Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1

 Score =  111 bits (277), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 40/263 (15%)

Query: 13  NFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKN 72
           N   +  + NV++    VCK +L   CP E+ ++TR DL                     
Sbjct: 17  NLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDL--------------------- 55

Query: 73  RDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELA 132
                       G C KIHD  LR  YEK+S+     Y+ D + +LQ+ +++ +RR    
Sbjct: 56  ------------GPCEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRG 103

Query: 133 KQRLLETQEVLSAEVA----EKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIE 188
             RL  +Q   S+  A    +    +  L + I   L + EELG+EG VEE+  +M  +E
Sbjct: 104 HARLALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVE 163

Query: 189 DLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIK 248
            L++++     T  +++ + + Q++++ VCEVC A+L + D   R+ DH  GK H+G+ K
Sbjct: 164 QLKEERELLRSTT-STIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAK 222

Query: 249 IREKLAELQAMEHLQAFISDCDR 271
           I+  + EL+  E L+    + DR
Sbjct: 223 IKATVEELK--EKLRKRTEEPDR 243

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Pongo abelii (taxid: 9601)

>sp|O95232|LC7L3_HUMAN Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2

 Score =  111 bits (277), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 128/263 (48%), Gaps = 40/263 (15%)

Query: 13  NFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKN 72
           N   +  + NV++    VCK +L   CP E+ ++TR DL                     
Sbjct: 17  NLAPDEKRSNVRWDHESVCKYYLCGFCPAELFTNTRSDL--------------------- 55

Query: 73  RDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELA 132
                       G C KIHD  LR  YEK+S+     Y+ D + +LQ+ +++ +RR    
Sbjct: 56  ------------GPCEKIHDENLRKQYEKSSRFMKVGYERDFLRYLQSLLAEVERRIRRG 103

Query: 133 KQRLLETQEVLSAEVA----EKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIE 188
             RL  +Q   S+  A    +    +  L + I   L + EELG+EG VEE+  +M  +E
Sbjct: 104 HARLALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVE 163

Query: 189 DLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIK 248
            L++++     T  +++ + + Q++++ VCEVC A+L + D   R+ DH  GK H+G+ K
Sbjct: 164 QLKEERELLRSTT-STIESFAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAK 222

Query: 249 IREKLAELQAMEHLQAFISDCDR 271
           I+  + EL+  E L+    + DR
Sbjct: 223 IKATVEELK--EKLRKRTEEPDR 243

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
307188498	305	Putative RNA-binding protein Luc7-like 1	0.604	0.685	0.739	2e-95
307215201	383	Putative RNA-binding protein Luc7-like 2	0.604	0.545	0.735	5e-95
332029196	361	Putative RNA-binding protein Luc7-like 2	0.604	0.578	0.735	9e-95
322789723	341	hypothetical protein SINV_04264 [Solenop	0.604	0.612	0.735	4e-94
91088003	328	PREDICTED: similar to splicing factor pT	0.604	0.637	0.714	5e-94
110761115	364	PREDICTED: putative RNA-binding protein	0.604	0.574	0.731	6e-94
350412545	358	PREDICTED: putative RNA-binding protein	0.604	0.583	0.731	8e-94
383848626	369	PREDICTED: putative RNA-binding protein	0.604	0.566	0.731	9e-94
380015676	370	PREDICTED: putative RNA-binding protein	0.604	0.564	0.731	9e-94
340720714	354	PREDICTED: putative RNA-binding protein	0.604	0.590	0.731	9e-94

>gi|307188498|gb|EFN73235.1| Putative RNA-binding protein Luc7-like 1 [Camponotus floridanus]

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 179/242 (73%), Positives = 192/242 (79%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           GE+NK+ VK+ DSKVCKSFLL CCPHEILSSTRMD                         
Sbjct: 21  GENNKFQVKYSDSKVCKSFLLACCPHEILSSTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGECP+IHDLALRADYE A K RD++YDIDAMEHLQ FI+DCDRRTE AKQR
Sbjct: 56  --------LGECPQIHDLALRADYEAAQKKRDHFYDIDAMEHLQNFIADCDRRTEQAKQR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE LSAEVA KAN+VH LAE+IGKKLAKAE+LG EGFVEES+KLM EI++LRKKK 
Sbjct: 108 LAETQEELSAEVAAKANSVHVLAEEIGKKLAKAEQLGEEGFVEESMKLMGEIDELRKKKN 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE  YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE
Sbjct: 168 EAEQEYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 227

Query: 256 LQ 257
           LQ
Sbjct: 228 LQ 229

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307215201|gb|EFN89973.1| Putative RNA-binding protein Luc7-like 2 [Harpegnathos saltator]

 Score =  353 bits (907), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 178/242 (73%), Positives = 192/242 (79%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           GE+NK+ VK+ DSKVCKSFLL CCPHEILSSTRMD                         
Sbjct: 21  GENNKFQVKYSDSKVCKSFLLACCPHEILSSTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGECP+IHDLALRADYE A K +D++YDIDAMEHLQ+FI+DCDRRTE AKQR
Sbjct: 56  --------LGECPQIHDLALRADYEAAQKKKDHFYDIDAMEHLQSFIADCDRRTEQAKQR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE LSAEVA KAN VH LAE+IGKKLAKAE+LG EGFVEES+KLM EI++LRKKK 
Sbjct: 108 LAETQEELSAEVAAKANNVHVLAEEIGKKLAKAEQLGEEGFVEESMKLMGEIDELRKKKN 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE  YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE
Sbjct: 168 EAEQEYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 227

Query: 256 LQ 257
           LQ
Sbjct: 228 LQ 229

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029196|gb|EGI69186.1| Putative RNA-binding protein Luc7-like 2 [Acromyrmex echinatior]

 Score =  353 bits (905), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 178/242 (73%), Positives = 191/242 (78%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           GE+NK+ VK+ DSKVCKSFLL CCPHEILSSTRMD                         
Sbjct: 21  GENNKFQVKYSDSKVCKSFLLACCPHEILSSTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGECP+IHDLALRADYE A K +D++YDIDAMEHLQ FI+DCDRRTE AKQR
Sbjct: 56  --------LGECPQIHDLALRADYEAAQKKKDHFYDIDAMEHLQNFIADCDRRTEQAKQR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE LSAEVA KAN VH LAE+IGKKLAKAE+LG EGFVEES+KLM EI++LRKKK 
Sbjct: 108 LAETQEELSAEVAAKANNVHVLAEEIGKKLAKAEQLGEEGFVEESMKLMGEIDELRKKKN 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE  YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE
Sbjct: 168 EAEQEYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 227

Query: 256 LQ 257
           LQ
Sbjct: 228 LQ 229

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789723|gb|EFZ14889.1| hypothetical protein SINV_04264 [Solenopsis invicta]

 Score =  350 bits (899), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 178/242 (73%), Positives = 190/242 (78%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           GE+NK+ VK+ DSKVCKSFLL CCPHEILSSTRMD                         
Sbjct: 21  GENNKFQVKYSDSKVCKSFLLACCPHEILSSTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGECP+IHDLALRADYE A K  D++YDIDAMEHLQ FI+DCDRRTE AKQR
Sbjct: 56  --------LGECPQIHDLALRADYEAAQKKNDHFYDIDAMEHLQNFIADCDRRTEQAKQR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE LSAEVA KAN VH LAE+IGKKLAKAE+LG EGFVEES+KLM EI++LRKKK 
Sbjct: 108 LAETQEELSAEVAAKANNVHVLAEEIGKKLAKAEQLGEEGFVEESMKLMGEIDELRKKKN 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE  YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE
Sbjct: 168 EAEQEYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 227

Query: 256 LQ 257
           LQ
Sbjct: 228 LQ 229

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088003|ref|XP_973796.1| PREDICTED: similar to splicing factor pTSR1, putative [Tribolium castaneum] gi|270011896|gb|EFA08344.1| hypothetical protein TcasGA2_TC005987 [Tribolium castaneum]

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 173/242 (71%), Positives = 193/242 (79%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           GE+ KY VKF DSKVCKSFLL CCPHEIL+STRMD                         
Sbjct: 21  GETTKYQVKFNDSKVCKSFLLGCCPHEILTSTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGECP+IHDLALRAD+EKA + +DY+YD+DAMEHLQAFI+DCDRRTE AKQR
Sbjct: 56  --------LGECPRIHDLALRADFEKAQQTKDYFYDLDAMEHLQAFITDCDRRTEAAKQR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE LSAEVA KAN+VH+LAE IG+KLAKAE+LG EGFV+ES+KLM E+++LRK+K 
Sbjct: 108 LAETQEELSAEVAVKANSVHELAEQIGQKLAKAEQLGEEGFVDESMKLMEEVDELRKRKL 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE  YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE
Sbjct: 168 EAEQEYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 227

Query: 256 LQ 257
           L+
Sbjct: 228 LE 229

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110761115|ref|XP_624373.2| PREDICTED: putative RNA-binding protein Luc7-like 2-like [Apis mellifera]

 Score =  350 bits (898), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 177/242 (73%), Positives = 190/242 (78%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           GE+NK+ VK+ D KVCKSFLL CCPHEILSSTRMD                         
Sbjct: 21  GENNKFQVKYSDPKVCKSFLLACCPHEILSSTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGECP+IHDLALRADYE A K +D++YDIDAMEHLQ FI+DCDRRTE AKQR
Sbjct: 56  --------LGECPQIHDLALRADYEAAQKKKDHFYDIDAMEHLQNFIADCDRRTEQAKQR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE LSAEVA KAN VH LAE+IGKKLAKAE+LG EGFVEES+KLM EI++LRKKK 
Sbjct: 108 LAETQEELSAEVAAKANNVHVLAEEIGKKLAKAEQLGEEGFVEESMKLMGEIDELRKKKN 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE  YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE
Sbjct: 168 EAEQEYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 227

Query: 256 LQ 257
           LQ
Sbjct: 228 LQ 229

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412545|ref|XP_003489684.1| PREDICTED: putative RNA-binding protein Luc7-like 2-like [Bombus impatiens]

 Score =  350 bits (897), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 177/242 (73%), Positives = 190/242 (78%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           GE+NK+ VK+ D KVCKSFLL CCPHEILSSTRMD                         
Sbjct: 21  GENNKFQVKYSDPKVCKSFLLACCPHEILSSTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGECP+IHDLALRADYE A K +D++YDIDAMEHLQ FI+DCDRRTE AKQR
Sbjct: 56  --------LGECPQIHDLALRADYEAAQKKKDHFYDIDAMEHLQNFIADCDRRTEQAKQR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE LSAEVA KAN VH LAE+IGKKLAKAE+LG EGFVEES+KLM EI++LRKKK 
Sbjct: 108 LAETQEELSAEVAAKANNVHVLAEEIGKKLAKAEQLGEEGFVEESMKLMGEIDELRKKKN 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE  YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE
Sbjct: 168 EAEQEYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 227

Query: 256 LQ 257
           LQ
Sbjct: 228 LQ 229

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848626|ref|XP_003699949.1| PREDICTED: putative RNA-binding protein Luc7-like 2-like [Megachile rotundata]

 Score =  349 bits (896), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 177/242 (73%), Positives = 190/242 (78%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           GE+NK+ VK+ D KVCKSFLL CCPHEILSSTRMD                         
Sbjct: 21  GENNKFQVKYSDPKVCKSFLLACCPHEILSSTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGECP+IHDLALRADYE A K +D++YDIDAMEHLQ FI+DCDRRTE AKQR
Sbjct: 56  --------LGECPQIHDLALRADYEAAQKKKDHFYDIDAMEHLQNFIADCDRRTEQAKQR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE LSAEVA KAN VH LAE+IGKKLAKAE+LG EGFVEES+KLM EI++LRKKK 
Sbjct: 108 LAETQEELSAEVAAKANNVHVLAEEIGKKLAKAEQLGEEGFVEESMKLMGEIDELRKKKN 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE  YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE
Sbjct: 168 EAEQEYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 227

Query: 256 LQ 257
           LQ
Sbjct: 228 LQ 229

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015676|ref|XP_003691825.1| PREDICTED: putative RNA-binding protein Luc7-like 2-like [Apis florea]

 Score =  349 bits (896), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 177/242 (73%), Positives = 190/242 (78%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           GE+NK+ VK+ D KVCKSFLL CCPHEILSSTRMD                         
Sbjct: 21  GENNKFQVKYSDPKVCKSFLLACCPHEILSSTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGECP+IHDLALRADYE A K +D++YDIDAMEHLQ FI+DCDRRTE AKQR
Sbjct: 56  --------LGECPQIHDLALRADYEAAQKKKDHFYDIDAMEHLQNFIADCDRRTEQAKQR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE LSAEVA KAN VH LAE+IGKKLAKAE+LG EGFVEES+KLM EI++LRKKK 
Sbjct: 108 LAETQEELSAEVAAKANNVHVLAEEIGKKLAKAEQLGEEGFVEESMKLMGEIDELRKKKN 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE  YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE
Sbjct: 168 EAEQEYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 227

Query: 256 LQ 257
           LQ
Sbjct: 228 LQ 229

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720714|ref|XP_003398777.1| PREDICTED: putative RNA-binding protein Luc7-like 2-like [Bombus terrestris]

 Score =  349 bits (896), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 177/242 (73%), Positives = 190/242 (78%), Gaps = 33/242 (13%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           GE+NK+ VK+ D KVCKSFLL CCPHEILSSTRMD                         
Sbjct: 21  GENNKFQVKYSDPKVCKSFLLACCPHEILSSTRMD------------------------- 55

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
                   LGECP+IHDLALRADYE A K +D++YDIDAMEHLQ FI+DCDRRTE AKQR
Sbjct: 56  --------LGECPQIHDLALRADYEAAQKKKDHFYDIDAMEHLQNFIADCDRRTEQAKQR 107

Query: 136 LLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA 195
           L ETQE LSAEVA KAN VH LAE+IGKKLAKAE+LG EGFVEES+KLM EI++LRKKK 
Sbjct: 108 LAETQEELSAEVAAKANNVHVLAEEIGKKLAKAEQLGEEGFVEESMKLMGEIDELRKKKN 167

Query: 196 EAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 255
           EAE  YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE
Sbjct: 168 EAEQEYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAE 227

Query: 256 LQ 257
           LQ
Sbjct: 228 LQ 229

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
FB|FBgn0036734	420	CG7564 [Drosophila melanogaste	0.511	0.421	0.802	5.9e-73
UNIPROTKB|G3MY01	458	LUC7L2 "Uncharacterized protei	0.511	0.386	0.757	7e-70
UNIPROTKB|Q9Y383	392	LUC7L2 "Putative RNA-binding p	0.511	0.451	0.757	7e-70
UNIPROTKB|F1SR21	458	LUC7L2 "Uncharacterized protei	0.511	0.386	0.757	7e-70
UNIPROTKB|F1NK51	378	LUC7L2 "Uncharacterized protei	0.592	0.542	0.658	1.1e-69
MGI|MGI:2183260	392	Luc7l2 "LUC7-like 2 (S. cerevi	0.511	0.451	0.751	1.4e-69
RGD|1308651	330	Luc7l2 "LUC7-like 2 (S. cerevi	0.511	0.536	0.751	1.4e-69
UNIPROTKB|F1LP75	340	Luc7l2 "Protein Luc7l2" [Rattu	0.511	0.520	0.751	1.4e-69
UNIPROTKB|F1NSZ3	350	LUC7L "Uncharacterized protein	0.511	0.505	0.751	1.8e-69
UNIPROTKB|G3V9R0	325	Luc7l "LUC7-like (S. cerevisia	0.511	0.544	0.745	3.8e-69

FB|FBgn0036734 CG7564 [Drosophila melanogaster (taxid:7227)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 142/177 (80%), Positives = 157/177 (88%)

Query:    81 RMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQ 140
             RMDLGECPK+HDLA RADYE A+K RDYYYDI+AMEHLQAFI+DCDRRT+ AKQRL ETQ
Sbjct:    58 RMDLGECPKVHDLAFRADYESAAKTRDYYYDIEAMEHLQAFIADCDRRTDSAKQRLKETQ 117

Query:   141 EVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDT 200
             E L+AEVAEKANAVH LAE+IGKKLAKAE LG  G VE+S++LM EIE+LR KK +AE  
Sbjct:   118 EELTAEVAEKANAVHGLAEEIGKKLAKAEALGEAGEVEDSMELMKEIEELRAKKIKAEHE 177

Query:   201 YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQ 257
             YR SMPAS+YQQQKLRVCEVCSAYLGIHDND RLADHFGGKLHLGF+ IREKL EL+
Sbjct:   178 YRTSMPASTYQQQKLRVCEVCSAYLGIHDNDIRLADHFGGKLHLGFLTIREKLIELE 234

GO:0005685 "U1 snRNP" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0071011 "precatalytic spliceosome" evidence=IDA

UNIPROTKB|G3MY01 LUC7L2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 134/177 (75%), Positives = 157/177 (88%)

Query:    81 RMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQ 140
             RMDLGEC K+HDLALRADYE ASK +D+++++DAM+HLQ+FI+DCDRRTE+AK+RL ETQ
Sbjct:   119 RMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQ 178

Query:   141 EVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDT 200
             E +SAEVA KA  VH+L E+IGK LAK E+LGAEG VEES K+M E+E  R KK EAE+ 
Sbjct:   179 EEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEV 238

Query:   201 YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQ 257
             YRNSMPASS+QQQKLRVCEVCSAYLG+HDNDRRLADHFGGKLHLGFI+IREKL EL+
Sbjct:   239 YRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELK 295

GO:0019899 "enzyme binding" evidence=IEA

UNIPROTKB|Q9Y383 LUC7L2 "Putative RNA-binding protein Luc7-like 2" [Homo sapiens (taxid:9606)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 134/177 (75%), Positives = 157/177 (88%)

Query:    81 RMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQ 140
             RMDLGEC K+HDLALRADYE ASK +D+++++DAM+HLQ+FI+DCDRRTE+AK+RL ETQ
Sbjct:    53 RMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQ 112

Query:   141 EVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDT 200
             E +SAEVA KA  VH+L E+IGK LAK E+LGAEG VEES K+M E+E  R KK EAE+ 
Sbjct:   113 EEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEV 172

Query:   201 YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQ 257
             YRNSMPASS+QQQKLRVCEVCSAYLG+HDNDRRLADHFGGKLHLGFI+IREKL EL+
Sbjct:   173 YRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELK 229

GO:0016607 "nuclear speck" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

UNIPROTKB|F1SR21 LUC7L2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 134/177 (75%), Positives = 157/177 (88%)

Query:    81 RMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQ 140
             RMDLGEC K+HDLALRADYE ASK +D+++++DAM+HLQ+FI+DCDRRTE+AK+RL ETQ
Sbjct:   119 RMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQ 178

Query:   141 EVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDT 200
             E +SAEVA KA  VH+L E+IGK LAK E+LGAEG VEES K+M E+E  R KK EAE+ 
Sbjct:   179 EEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEV 238

Query:   201 YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQ 257
             YRNSMPASS+QQQKLRVCEVCSAYLG+HDNDRRLADHFGGKLHLGFI+IREKL EL+
Sbjct:   239 YRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELK 295

GO:0019899 "enzyme binding" evidence=IEA

UNIPROTKB|F1NK51 LUC7L2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 141/214 (65%), Positives = 172/214 (80%)

Query:    81 RMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQ 140
             RMDLGEC K+HDLALRADYE ASK++D+++++DAM+HLQ+FI+DCDRRTE+AK+RL ETQ
Sbjct:    33 RMDLGECLKVHDLALRADYEIASKDQDFFFELDAMDHLQSFIADCDRRTEVAKKRLAETQ 92

Query:   141 EVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDT 200
             E +SAEVA KA  VH+L E+IGK LAK E+LGA+G VEES K+M E+E  R KK EAE+ 
Sbjct:    93 EEISAEVAAKAERVHELNEEIGKLLAKVEQLGADGNVEESQKVMDEVEKARVKKREAEEV 152

Query:   201 YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAME 260
             YRNSMPASS+QQQKLRVCEVCSAYLG+HDNDRRLADHFGGKLHLGFI+IREKL EL+ + 
Sbjct:   153 YRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELRRI- 211

Query:   261 HLQAFISDCDRRTELAKQRLLETQEVLSAEVAEK 294
                  ++D   + E   Q  L+ +E    E  EK
Sbjct:   212 -----VAD---KQEKRNQERLKRREEREREEREK 237

GO:0019899 "enzyme binding" evidence=IEA

MGI|MGI:2183260 Luc7l2 "LUC7-like 2 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 133/177 (75%), Positives = 157/177 (88%)

Query:    81 RMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQ 140
             RMDLGEC K+HDLALRADYE ASK +D+++++DAM+HLQ+FI+DCDRRTE++K+RL ETQ
Sbjct:    53 RMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVSKKRLAETQ 112

Query:   141 EVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDT 200
             E +SAEVA KA  VH+L E+IGK LAK E+LGAEG VEES K+M E+E  R KK EAE+ 
Sbjct:   113 EEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEV 172

Query:   201 YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQ 257
             YRNSMPASS+QQQKLRVCEVCSAYLG+HDNDRRLADHFGGKLHLGFI+IREKL EL+
Sbjct:   173 YRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELK 229

GO:0005634 "nucleus" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|1308651 Luc7l2 "LUC7-like 2 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 133/177 (75%), Positives = 157/177 (88%)

Query:    81 RMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQ 140
             RMDLGEC K+HDLALRADYE ASK +D+++++DAM+HLQ+FI+DCDRRTE++K+RL ETQ
Sbjct:     1 RMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVSKKRLAETQ 60

Query:   141 EVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDT 200
             E +SAEVA KA  VH+L E+IGK LAK E+LGAEG VEES K+M E+E  R KK EAE+ 
Sbjct:    61 EEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEV 120

Query:   201 YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQ 257
             YRNSMPASS+QQQKLRVCEVCSAYLG+HDNDRRLADHFGGKLHLGFI+IREKL EL+
Sbjct:   121 YRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELK 177

GO:0019899 "enzyme binding" evidence=IEA;ISO

UNIPROTKB|F1LP75 Luc7l2 "Protein Luc7l2" [Rattus norvegicus (taxid:10116)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 133/177 (75%), Positives = 157/177 (88%)

Query:    81 RMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQ 140
             RMDLGEC K+HDLALRADYE ASK +D+++++DAM+HLQ+FI+DCDRRTE++K+RL ETQ
Sbjct:     1 RMDLGECLKVHDLALRADYEIASKEQDFFFELDAMDHLQSFIADCDRRTEVSKKRLAETQ 60

Query:   141 EVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDT 200
             E +SAEVA KA  VH+L E+IGK LAK E+LGAEG VEES K+M E+E  R KK EAE+ 
Sbjct:    61 EEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEV 120

Query:   201 YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQ 257
             YRNSMPASS+QQQKLRVCEVCSAYLG+HDNDRRLADHFGGKLHLGFI+IREKL EL+
Sbjct:   121 YRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELK 177

GO:0019899 "enzyme binding" evidence=IEA

UNIPROTKB|F1NSZ3 LUC7L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 133/177 (75%), Positives = 158/177 (89%)

Query:    81 RMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQ 140
             RMDLGEC KIHDLALRADYE ASK RD ++++DAM+HL++FI++CDRRTELAK+RL ETQ
Sbjct:    33 RMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQ 92

Query:   141 EVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDT 200
             E +SAEV+ KA  VH+L EDIGK LAKAE+LGAEG V+ES K++ E+E +R KK EAE+ 
Sbjct:    93 EEISAEVSAKAEKVHELNEDIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEEE 152

Query:   201 YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQ 257
             YRNSMPASS+QQQKLRVCEVCSAYLG+HDNDRRLADHFGGKLHLGFI+IREKL +L+
Sbjct:   153 YRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLR 209

GO:0005634 "nucleus" evidence=IEA

GO:0045843 "negative regulation of striated muscle tissue development" evidence=IEA

GO:0050733 "RS domain binding" evidence=IEA

UNIPROTKB|G3V9R0 Luc7l "LUC7-like (S. cerevisiae), isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 132/177 (74%), Positives = 158/177 (89%)

Query:    81 RMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQ 140
             RMDLGEC KIHDLALRADYE ASK RD ++++DAM+HL++FI++CDRRTELAK+RL ETQ
Sbjct:    53 RMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRRTELAKKRLAETQ 112

Query:   141 EVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDT 200
             E +SAEV+ KA  VH+L E+IGK LAKAE+LGAEG V+ES K++ E+E +R KK EAE+ 
Sbjct:   113 EEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRSKKKEAEEE 172

Query:   201 YRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQ 257
             YRNSMPASS+QQQKLRVCEVCSAYLG+HDNDRRLADHFGGKLHLGFI+IREKL +L+
Sbjct:   173 YRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLR 229

GO:0005634 "nucleus" evidence=IEA

GO:0045843 "negative regulation of striated muscle tissue development" evidence=IEA

GO:0050733 "RS domain binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7TNC4	LC7L2_MOUSE	No assigned EC number	0.6198	0.6040	0.5331	yes	N/A
Q9USM4	LUC7_SCHPO	No assigned EC number	0.3293	0.6127	0.8030	yes	N/A
Q9Y383	LC7L2_HUMAN	No assigned EC number	0.6239	0.6040	0.5331	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	346
pfam03194	252	pfam03194, LUC7, LUC7 N_terminus	1e-86
COG5200	258	COG5200, LUC7, U1 snRNP component, mediates U1 snR	3e-38
pfam03194	252	pfam03194, LUC7, LUC7 N_terminus	3e-19

>gnl|CDD|217417 pfam03194, LUC7, LUC7 N_terminus

 Score =  261 bits (668), Expect = 1e-86
 Identities = 122/247 (49%), Positives = 167/247 (67%), Gaps = 36/247 (14%)

Query: 16  GESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDY 75
           G+ ++ +VKF D +VC+S+L+  CPH++  +T+MDLG CPK+HDL L+ADYE+ASK++DY
Sbjct: 18  GDESRQSVKFDDREVCRSYLVGFCPHDLFQNTKMDLGPCPKVHDLKLKADYERASKSQDY 77

Query: 76  YYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQR 135
           +                                 Y+++A+E L+ F+ DCDR+ + AKQR
Sbjct: 78  FP--------------------------------YEVEALEILERFVHDCDRKIDKAKQR 105

Query: 136 LLETQEVLSAEVAE-KANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKK 194
           L  TQE  +   A+ KA  + +L E+IGK LA+AE LG EG V+E++KLM E+E+L+ KK
Sbjct: 106 LELTQEEQTKIAADSKAEELAELDEEIGKLLAEAEALGEEGKVDEAMKLMKEVEELKAKK 165

Query: 195 AEAEDT--YRNSMPAS-SYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIRE 251
            E ED+   RN+ P+S   QQQKLRVCEVC AYL   DNDRRLADHFGGKLHLG++K+RE
Sbjct: 166 KELEDSDEVRNAAPSSAQAQQQKLRVCEVCGAYLSRLDNDRRLADHFGGKLHLGYVKVRE 225

Query: 252 KLAELQA 258
           KLAEL+ 
Sbjct: 226 KLAELKE 232

This family contains the N terminal region of several LUC7 protein homologues and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP). Length = 252

>gnl|CDD|227527 COG5200, LUC7, U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

 Score =  136 bits (344), Expect = 3e-38
 Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 35/235 (14%)

Query: 23  VKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRM 82
             F D KVC S L+  CP ++  +T+  LG+CP  H+              + Y      
Sbjct: 26  THFTDKKVCISMLVGFCPFDLFRNTKRSLGKCPTSHE--------------EKY------ 65

Query: 83  DLGECPKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEV 142
                        +A+YE+  + R   Y+ + +  L   +  C+     A      T E 
Sbjct: 66  -------------KAEYERNGRERAEEYEWEYLRLLVRIVLSCNDGIRAAGLEDRTTPE- 111

Query: 143 LSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDTYR 202
              ++ EK    +++ E IG+   + + L     VE +     E+E LR+++ E ++   
Sbjct: 112 EFGKIKEKEELFNRVDESIGELGMEGDALAKRKLVERACSAFNELERLREERKEIKEAVY 171

Query: 203 NSMP-ASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAEL 256
           + +        QKL+VC +C AYL   D DRRLADHF GKLHLG++ +R  LA+L
Sbjct: 172 SMVENNGQGTHQKLQVCGICGAYLSRLDTDRRLADHFNGKLHLGYLLVRSDLADL 226

Length = 258

>gnl|CDD|217417 pfam03194, LUC7, LUC7 N_terminus

 Score = 85.2 bits (211), Expect = 3e-19
 Identities = 39/77 (50%), Positives = 55/77 (71%), Gaps = 1/77 (1%)

Query: 255 ELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAE-KANAVHQLAEDIGKKLAKAE 313
           E++A+E L+ F+ DCDR+ + AKQRL  TQE  +   A+ KA  + +L E+IGK LA+AE
Sbjct: 81  EVEALEILERFVHDCDRKIDKAKQRLELTQEEQTKIAADSKAEELAELDEEIGKLLAEAE 140

Query: 314 ELGAEGFVEESLKLMTE 330
            LG EG V+E++KLM E
Sbjct: 141 ALGEEGKVDEAMKLMKE 157

This family contains the N terminal region of several LUC7 protein homologues and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP). Length = 252

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	100.0
KOG0796|consensus	319		100.0
COG5200	258	LUC7 U1 snRNP component, mediates U1 snRNP associa	100.0
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	99.94
KOG0796|consensus	319		99.91
COG5200	258	LUC7 U1 snRNP component, mediates U1 snRNP associa	99.24
PHA02562	562	46 endonuclease subunit; Provisional	94.56
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.75
PF13779	820	DUF4175: Domain of unknown function (DUF4175)	91.39
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	91.25
KOG0994|consensus	1758		88.31
TIGR02302	851	aProt_lowcomp conserved hypothetical protein TIGR0	87.05
KOG0250|consensus	1074		84.34
PRK02224	880	chromosome segregation protein; Provisional	83.88
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	82.77
PF07361	103	Cytochrom_B562: Cytochrome b562; InterPro: IPR0091	80.62

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=100.00  E-value=1.4e-69  Score=511.67  Aligned_cols=217  Identities=55%  Similarity=0.874  Sum_probs=196.3

Q ss_pred             ccCCCCCCCCCcccCCCCcchhhhhhcCCChhhhhhhCccCCCCCCccccHHHHHHHHHhhccCCccccccccccCCCch
Q psy4154          10 FSINFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPK   89 (346)
Q Consensus        10 ~~~~r~~~~~~~~~~~~D~~VCk~fL~g~CPhdLF~nTk~dlG~C~k~H~~~lk~~ye~~~~~~~~~~~~~r~d~g~c~k   89 (346)
                      ||.+||+...+..++|+||+|||||||||||||||+|||+||||||||||++||++|++                     
T Consensus        12 MG~~Rn~~~~~~~~~f~D~~VCk~~L~g~CPhdLF~nTK~DLG~C~kiHd~~lk~~Ye~---------------------   70 (254)
T PF03194_consen   12 MGSNRNGDPSKRKVHFTDPDVCKYFLVGFCPHDLFVNTKSDLGPCPKIHDEALKAEYEK---------------------   70 (254)
T ss_pred             cCCccCCCccccCCCCCCcccCHHHHhCCCcHHHHhhcccccchhhhhcCHHHHHHHHh---------------------
Confidence            89999999877779999999999999999999999999999999999999999999955                     


Q ss_pred             hhhhhhHHHHHHhhhcccch-hhHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHH
Q psy4154          90 IHDLALRADYEKASKNRDYY-YDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEV-AEKANAVHQLAEDIGKKLAK  167 (346)
Q Consensus        90 ~h~~~lr~~~e~~~~~~~~~-yE~e~~~~L~~~I~dcdRkI~~ak~RLe~~~~~~~~~~-~~~~~~i~~l~~~I~~~l~~  167 (346)
                                  +++..+++ ||++|+++|++||.+|||||+++++||+.++++.+... ....+.|..|+++|++++++
T Consensus        71 ------------~~~~~~~~~YE~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~  138 (254)
T PF03194_consen   71 ------------ASKKEKYGGYEREFLRYLQRLIRDCDRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKE  138 (254)
T ss_pred             ------------CccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence                        44455555 99999999999999999999999999999887765333 23478999999999999999


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH---hhccCCCCCc-hhhhcccccccchhhhcccCcchhhhcccCCccc
Q psy4154         168 AEELGAEGFVEESLKLMTEIEDLRKKKAEAED---TYRNSMPASS-YQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLH  243 (346)
Q Consensus       168 aE~LGeeG~VdeA~~~~~~~e~lka~~deL~~---~~rn~~~~~~-~~~~k~~vCdVCga~L~~~d~~~R~~dH~~gK~H  243 (346)
                      ||+||++|+||+|+++|.+|+.|++++++|..   .+++..+... +++++|.||+|||+||+++|+++|++|||+||+|
T Consensus       139 aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~le~~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d~RladH~~GK~H  218 (254)
T PF03194_consen  139 AEELGEEGDVDEAQKLMEEVEKLKEEKEELEKELEEYRNSIENSAQSQQQKLEVCEVCGAFLSVGDNDRRLADHFGGKQH  218 (254)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccccCccchhhhhhHHhccchHHHHHHHhccchh
Confidence            99999999999999999999999999999998   5566555442 5678999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHH
Q psy4154         244 LGFIKIREKLAELQAM  259 (346)
Q Consensus       244 ~g~~~lR~~~~El~~~  259 (346)
                      +||.+||+.+.+++..
T Consensus       219 lGy~~IR~~l~el~e~  234 (254)
T PF03194_consen  219 LGYAKIREKLKELKEK  234 (254)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            9999999999988843

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>KOG0796|consensus

Probab=100.00  E-value=4e-66  Score=492.27  Aligned_cols=216  Identities=60%  Similarity=0.956  Sum_probs=198.7

Q ss_pred             ccCCCCCCCCCcccCCCCcchhhhhhcCCChhhhhhhCccCCCCCCccccHHHHHHHHHhhccCCccccccccccCCCch
Q psy4154          10 FSINFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPK   89 (346)
Q Consensus        10 ~~~~r~~~~~~~~~~~~D~~VCk~fL~g~CPhdLF~nTk~dlG~C~k~H~~~lk~~ye~~~~~~~~~~~~~r~d~g~c~k   89 (346)
                      ||+||||+.....+.|+||+||+||||||||||||+|||+|||+||++|+++||++|+                      
T Consensus        13 MGs~r~~~~~~~~v~~~D~~VC~~fLvg~CPHDlF~nTk~dlg~C~kvHd~~lk~~Ye----------------------   70 (319)
T KOG0796|consen   13 MGSNRDGDETRQRVKFDDPDVCKSFLVGFCPHDLFQNTKMDLGPCPKVHDEALKADYE----------------------   70 (319)
T ss_pred             hCCCcCCCcccCCCCCCchhHHHHHHhCCCcHHHhhhhhcccCcccchhhHHHHHHHh----------------------
Confidence            8999999988888999999999999999999999999999999999999999999994                      


Q ss_pred             hhhhhhHHHHHHhhhcccchhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4154          90 IHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAE  169 (346)
Q Consensus        90 ~h~~~lr~~~e~~~~~~~~~yE~e~~~~L~~~I~dcdRkI~~ak~RLe~~~~~~~~~~~~~~~~i~~l~~~I~~~l~~aE  169 (346)
                                 .+++..+++||++|+++|+++|.||+++|+++++||..+.++.+.....++++|..|+++|+.++++||
T Consensus        71 -----------~~~k~~~~~~E~d~~~~l~~~v~d~~rri~~~kerL~e~~ee~~~e~~~k~~~v~~l~e~I~~~l~~~E  139 (319)
T KOG0796|consen   71 -----------RASKERDYGYEWDALEILERFVADVDRRIEKAKERLAETVEERSEEAARKAEKVHELEEKIGKLLEKAE  139 (319)
T ss_pred             -----------hchHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       466678899999999999999999999999999999999776665555667899999999999999999


Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHH-HHHHHHHhhccCCCCCchhhhcccccccchhhhcccCcchhhhcccCCccccchHH
Q psy4154         170 ELGAEGFVEESLKLMTEIEDLRK-KKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIK  248 (346)
Q Consensus       170 ~LGeeG~VdeA~~~~~~~e~lka-~~deL~~~~rn~~~~~~~~~~k~~vCdVCga~L~~~d~~~R~~dH~~gK~H~g~~~  248 (346)
                      +||++|+|++||++|.++|.|++ ++......+.+.++..+.++|+|.||+||||||+++|+++|++|||+||+|+||..
T Consensus       140 ~LG~eG~Veeaq~~~~e~E~lk~~e~e~~~~~~~~~~~~~~~~~qkl~VCeVCGa~L~~~D~d~RlaDHf~GKlHlGy~~  219 (319)
T KOG0796|consen  140 ELGEEGNVEEAQKAMKEVEELKAKEKEEAEESYNTTMPGASAQQQKLRVCEVCGAFLSVNDADRRLADHFGGKLHLGYVL  219 (319)
T ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhhhhhhhhHHHhhhHHHhccchHHHHHHhhcchHHHHHHH
Confidence            99999999999999999999998 66666666666666666788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy4154         249 IREKLAELQA  258 (346)
Q Consensus       249 lR~~~~El~~  258 (346)
                      ||++|.+|+.
T Consensus       220 iR~~l~eLk~  229 (319)
T KOG0796|consen  220 IREKLAELKK  229 (319)
T ss_pred             HHHHHHHHHH
Confidence            9999998874

>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

Probab=100.00  E-value=3.1e-51  Score=368.93  Aligned_cols=213  Identities=31%  Similarity=0.559  Sum_probs=191.5

Q ss_pred             ccCCCCCCCCCcccCCCCcchhhhhhcCCChhhhhhhCccCCCCCCccccHHHHHHHHHhhccCCccccccccccCCCch
Q psy4154          10 FSINFPGESNKYNVKFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLALRADYEKASKNRDYYYDIDRMDLGECPK   89 (346)
Q Consensus        10 ~~~~r~~~~~~~~~~~~D~~VCk~fL~g~CPhdLF~nTk~dlG~C~k~H~~~lk~~ye~~~~~~~~~~~~~r~d~g~c~k   89 (346)
                      ||++|..-...+..||+||+||+||||||||||||+|||++||+||++|.+++|.+|+.                     
T Consensus        13 mG~~~s~f~~~r~~hftd~kvC~s~Lvg~CP~dlF~nTk~slGkCp~~H~~k~K~~YeR---------------------   71 (258)
T COG5200          13 MGPERSTFDPCRPTHFTDKKVCISMLVGFCPFDLFRNTKRSLGKCPTSHEEKYKAEYER---------------------   71 (258)
T ss_pred             hCCCcccCCCCCCccccchHHHHHHHHccCcHHHHhccccccCCCcchhHHHHHHHHhh---------------------
Confidence            78888866667788999999999999999999999999999999999999999999955                     


Q ss_pred             hhhhhhHHHHHHhhhcccchhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4154          90 IHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAE  169 (346)
Q Consensus        90 ~h~~~lr~~~e~~~~~~~~~yE~e~~~~L~~~I~dcdRkI~~ak~RLe~~~~~~~~~~~~~~~~i~~l~~~I~~~l~~aE  169 (346)
                                  +...+.++||++|++.|.++|.+|+..|+.|-.+...|+++-. .+.++.+.+..+++.|+.+-.+.+
T Consensus        72 ------------~~~~~~~~yEweyl~~L~r~V~~cn~~I~~a~~~~~~t~ee~~-kI~e~~e~~~~~d~sIg~lg~e~d  138 (258)
T COG5200          72 ------------NGRERAEEYEWEYLRLLVRIVLSCNDGIRAAGLEDRTTPEEFG-KIKEKEELFNRVDESIGELGMEGD  138 (258)
T ss_pred             ------------hhhccchhhhHHHHHHHHHHHHHhcchhhhhhhhccCCHHHHH-hHHHHHHHHHHHHHHHHHHHHhHH
Confidence                        4456778999999999999999999999999999988887643 477888889999999999999999


Q ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-chhhhcccccccchhhhcccCcchhhhcccCCccccchHH
Q psy4154         170 ELGAEGFVEESLKLMTEIEDLRKKKAEAEDTYRNSMPAS-SYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIK  248 (346)
Q Consensus       170 ~LGeeG~VdeA~~~~~~~e~lka~~deL~~~~rn~~~~~-~~~~~k~~vCdVCga~L~~~d~~~R~~dH~~gK~H~g~~~  248 (346)
                      .|...-.|+.|+....+++.|+.++.++.....+++... +..+|||+||+|||+||+..|+++|++|||+||+|+||..
T Consensus       139 alakrk~V~~a~~~f~el~rl~~~rkei~~~v~sm~en~gq~thqklqvC~iCgayLsrlDtdrrladHf~GklHlGy~~  218 (258)
T COG5200         139 ALAKRKLVERACSAFNELERLREERKEIKEAVYSMVENNGQGTHQKLQVCGICGAYLSRLDTDRRLADHFNGKLHLGYLL  218 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhhhhhhHHHhcchhhHHHHHhccchhhhHHH
Confidence            999988999999999999999999999999988765433 3568999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy4154         249 IREKLAEL  256 (346)
Q Consensus       249 lR~~~~El  256 (346)
                      +|..|..+
T Consensus       219 ~R~dl~~l  226 (258)
T COG5200         219 VRSDLADL  226 (258)
T ss_pred             HHHHHHHH
Confidence            99776643

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=99.94  E-value=1.4e-26  Score=219.16  Aligned_cols=146  Identities=34%  Similarity=0.459  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHhhccCCCCCchhhhcccccccchhhhcccCcchhhh---cccC--CccccchHHHHHHHH--------
Q psy4154         188 EDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLA---DHFG--GKLHLGFIKIREKLA--------  254 (346)
Q Consensus       188 e~lka~~deL~~~~rn~~~~~~~~~~k~~vCdVCga~L~~~d~~~R~~---dH~~--gK~H~g~~~lR~~~~--------  254 (346)
                      +.++++||+|||..||..+....  .+|.+++||++||++||+..-+.   ..+|  .|+|+.  .+|..|+        
T Consensus         2 d~~Ra~LdeLMG~~Rn~~~~~~~--~~f~D~~VCk~~L~g~CPhdLF~nTK~DLG~C~kiHd~--~lk~~Ye~~~~~~~~   77 (254)
T PF03194_consen    2 DEMRAMLDELMGSNRNGDPSKRK--VHFTDPDVCKYFLVGFCPHDLFVNTKSDLGPCPKIHDE--ALKAEYEKASKKEKY   77 (254)
T ss_pred             HHHHHHHHHHcCCccCCCccccC--CCCCCcccCHHHHhCCCcHHHHhhcccccchhhhhcCH--HHHHHHHhCcccccc
Confidence            67899999999999998764322  67999999999999999553220   1122  377876  5777765        


Q ss_pred             ---HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhHhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q psy4154         255 ---ELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEV-AEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTE  330 (346)
Q Consensus       255 ---El~~~r~L~~~i~d~DRrI~~ak~RL~~t~ee~~~~~-~~~~~~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~  330 (346)
                         |.+++++|++||.||||||++|++||+.++++.+... ...++.|..|+++|++++++||+||++|+|++|+++|.+
T Consensus        78 ~~YE~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~  157 (254)
T PF03194_consen   78 GGYEREFLRYLQRLIRDCDRRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEE  157 (254)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence               7889999999999999999999999999988776543 235899999999999999999999999999999999999


Q ss_pred             HhhhcCC
Q psy4154         331 QTSSCSP  337 (346)
Q Consensus       331 ~e~l~~~  337 (346)
                      |+.|+.+
T Consensus       158 ~e~Lk~e  164 (254)
T PF03194_consen  158 VEKLKEE  164 (254)
T ss_pred             HHHHHHH
Confidence            9999764

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>KOG0796|consensus

Probab=99.91  E-value=5.4e-24  Score=203.78  Aligned_cols=142  Identities=39%  Similarity=0.486  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHhhccCCCCCchhhhcccccccchhhhcccCcchhh----hcccC--CccccchHHHHHHHH---------
Q psy4154         190 LRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRL----ADHFG--GKLHLGFIKIREKLA---------  254 (346)
Q Consensus       190 lka~~deL~~~~rn~~~~~~~~~~k~~vCdVCga~L~~~d~~~R~----~dH~~--gK~H~g~~~lR~~~~---------  254 (346)
                      +++++++|||..++.....  +-.+|++++||.+||++|||..-+    .| ++  -|+|..  +||..|+         
T Consensus         5 mR~mLdqLMGs~r~~~~~~--~~v~~~D~~VC~~fLvg~CPHDlF~nTk~d-lg~C~kvHd~--~lk~~Ye~~~k~~~~~   79 (319)
T KOG0796|consen    5 MRAMLDQLMGSNRDGDETR--QRVKFDDPDVCKSFLVGFCPHDLFQNTKMD-LGPCPKVHDE--ALKADYERASKERDYG   79 (319)
T ss_pred             HHHHHHHHhCCCcCCCccc--CCCCCCchhHHHHHHhCCCcHHHhhhhhcc-cCcccchhhH--HHHHHHhhchHhhhhh
Confidence            8999999999888765433  225899999999999999965322    12 22  388988  5776665         


Q ss_pred             -HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhh
Q psy4154         255 -ELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEQTS  333 (346)
Q Consensus       255 -El~~~r~L~~~i~d~DRrI~~ak~RL~~t~ee~~~~~~~~~~~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~~e~  333 (346)
                       |.++|++|+.+|.||+++|+++++||++|.++.......++++|..|+++|+.++++||+||++|+|++||++|.+++.
T Consensus        80 ~E~d~~~~l~~~v~d~~rri~~~kerL~e~~ee~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~  159 (319)
T KOG0796|consen   80 YEWDALEILERFVADVDRRIEKAKERLAETVEERSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEE  159 (319)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence             8999999999999999999999999999977666655667889999999999999999999999999999999999999


Q ss_pred             hcC
Q psy4154         334 SCS  336 (346)
Q Consensus       334 l~~  336 (346)
                      |.+
T Consensus       160 lk~  162 (319)
T KOG0796|consen  160 LKA  162 (319)
T ss_pred             HHH
Confidence            986

>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

Probab=99.24  E-value=3.2e-11  Score=110.04  Aligned_cols=144  Identities=17%  Similarity=0.143  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCchhhhcccccccchhhhcccCcchhhhcccC---------CccccchHHHHHH-----
Q psy4154         187 IEDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFG---------GKLHLGFIKIREK-----  252 (346)
Q Consensus       187 ~e~lka~~deL~~~~rn~~~~~~~~~~k~~vCdVCga~L~~~d~~~R~~dH~~---------gK~H~g~~~lR~~-----  252 (346)
                      +.+.+..+++|||..+..-...+.  .++.+.+||.+||+++|+.    |.|.         -++|..|.++..+     
T Consensus         2 aaeqRkv~eqLmG~~~s~f~~~r~--~hftd~kvC~s~Lvg~CP~----dlF~nTk~slGkCp~~H~~k~K~~YeR~~~~   75 (258)
T COG5200           2 AAEQRKVLEQLMGPERSTFDPCRP--THFTDKKVCISMLVGFCPF----DLFRNTKRSLGKCPTSHEEKYKAEYERNGRE   75 (258)
T ss_pred             chHHHHHHHHHhCCCcccCCCCCC--ccccchHHHHHHHHccCcH----HHHhccccccCCCcchhHHHHHHHHhhhhhc
Confidence            345678888999987653222112  2488999999999999944    4442         2677776554222     


Q ss_pred             ---HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q psy4154         253 ---LAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMT  329 (346)
Q Consensus       253 ---~~El~~~r~L~~~i~d~DRrI~~ak~RL~~t~ee~~~~~~~~~~~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~  329 (346)
                         ..|.++++.|.++|.+|..+|+.|-.++.+||++-.. +.++++.+..+++.|+.+-.+.+.|...-.|+.|.....
T Consensus        76 ~~~~yEweyl~~L~r~V~~cn~~I~~a~~~~~~t~ee~~k-I~e~~e~~~~~d~sIg~lg~e~dalakrk~V~~a~~~f~  154 (258)
T COG5200          76 RAEEYEWEYLRLLVRIVLSCNDGIRAAGLEDRTTPEEFGK-IKEKEELFNRVDESIGELGMEGDALAKRKLVERACSAFN  154 (258)
T ss_pred             cchhhhHHHHHHHHHHHHHhcchhhhhhhhccCCHHHHHh-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence               2389999999999999999999999999999888766 779999999999999999999999999999999999999


Q ss_pred             HHhhhcCC
Q psy4154         330 EQTSSCSP  337 (346)
Q Consensus       330 ~~e~l~~~  337 (346)
                      +++.|..+
T Consensus       155 el~rl~~~  162 (258)
T COG5200         155 ELERLREE  162 (258)
T ss_pred             HHHHHHHH
Confidence            99988653

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.56  E-value=6.8  Score=40.75  Aligned_cols=13  Identities=23%  Similarity=0.606  Sum_probs=10.0

Q ss_pred             cccccchhhhccc
Q psy4154         216 RVCEVCSAYLGIH  228 (346)
Q Consensus       216 ~vCdVCga~L~~~  228 (346)
                      ..|+.|+.-+...
T Consensus       285 ~~Cp~C~~~~~~~  297 (562)
T PHA02562        285 GVCPTCTQQISEG  297 (562)
T ss_pred             CCCCCCCCcCCCc
Confidence            5899999877543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.75  E-value=18  Score=39.73  Aligned_cols=32  Identities=22%  Similarity=0.253  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q psy4154         149 EKANAVHQLAEDIGKKLAKAEELGAEGFVEESLK  182 (346)
Q Consensus       149 ~~~~~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~  182 (346)
                      ....+|.++.+.++.+-..++.|.+  ++++|..
T Consensus       576 ~Ql~~L~~l~e~~~~l~~~ae~Lae--R~e~a~d  607 (717)
T PF10168_consen  576 QQLKELQELQEERKSLRESAEKLAE--RYEEAKD  607 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            4456788888888888888888876  4666643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF13779 DUF4175: Domain of unknown function (DUF4175)

Probab=91.39  E-value=23  Score=39.60  Aligned_cols=73  Identities=23%  Similarity=0.362  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhh------hhhhHHHHHHHHHHH----------------------------HHHHHH
Q psy4154         116 EHLQAFISDCDRRTELAKQRLLETQ------EVLSAEVAEKANAVH----------------------------QLAEDI  161 (346)
Q Consensus       116 ~~L~~~I~dcdRkI~~ak~RLe~~~------~~~~~~~~~~~~~i~----------------------------~l~~~I  161 (346)
                      .+-+.=+.+.+++++.|+++|.+.-      +++..-+.+..+-+.                            .-...+
T Consensus       461 ~iEdG~ls~A~~~Lr~AQe~L~eAL~~gAs~eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL  540 (820)
T PF13779_consen  461 RIEDGDLSDAERRLRAAQEALREALERGASDEEIARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDL  540 (820)
T ss_pred             HhhcCcHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHH
Confidence            3334557888999999999997632      222111111111110                            125678


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy4154         162 GKKLAKAEELGAEGFVEESLKLMTEIE  188 (346)
Q Consensus       162 ~~~l~~aE~LGeeG~VdeA~~~~~~~e  188 (346)
                      +.+|.++++|.++|..++|+.+|.+++
T Consensus       541 ~~mmd~ie~la~~G~~~~A~q~L~qlq  567 (820)
T PF13779_consen  541 QRMMDRIEELARSGRMDEARQLLEQLQ  567 (820)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            899999999999999999999988665

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=91.25  E-value=12  Score=34.44  Aligned_cols=82  Identities=18%  Similarity=0.168  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q psy4154         116 EHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKA  195 (346)
Q Consensus       116 ~~L~~~I~dcdRkI~~ak~RLe~~~~~~~~~~~~~~~~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e~lka~~d  195 (346)
                      ..|+.+|+|++.-|.+++.-+.....    .......++.++...|.....+|+..-..|+=|-|..++.....+.....
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a----~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~  101 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMA----NQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE  101 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999888865432    22345678999999999999999999999999999999988888888777


Q ss_pred             HHHHhh
Q psy4154         196 EAEDTY  201 (346)
Q Consensus       196 eL~~~~  201 (346)
                      .+....
T Consensus       102 ~l~~~~  107 (221)
T PF04012_consen  102 RLEQQL  107 (221)
T ss_pred             HHHHHH
Confidence            776644

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG0994|consensus

Probab=88.31  E-value=56  Score=37.91  Aligned_cols=46  Identities=22%  Similarity=0.415  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHH---HH-Hh-hcCCHHHHHHHHHHHHHHHHHHHHH
Q psy4154         152 NAVHQLAEDIGKKLAKA---EE-LG-AEGFVEESLKLMTEIEDLRKKKAEA  197 (346)
Q Consensus       152 ~~i~~l~~~I~~~l~~a---E~-LG-eeG~VdeA~~~~~~~e~lka~~deL  197 (346)
                      ++|..|..+|++.+...   +. |- -.|+|..|..|..++.+.+..-+.+
T Consensus      1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v 1561 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDV 1561 (1758)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHH
Confidence            56666677776665532   22 22 1677777777777776665544433

>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302

Probab=87.05  E-value=4  Score=45.51  Aligned_cols=76  Identities=17%  Similarity=0.299  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhhh------hhhhHHHHHHH-------HHHH-------------------HH-HHHH
Q psy4154         115 MEHLQAFISDCDRRTELAKQRLLETQ------EVLSAEVAEKA-------NAVH-------------------QL-AEDI  161 (346)
Q Consensus       115 ~~~L~~~I~dcdRkI~~ak~RLe~~~------~~~~~~~~~~~-------~~i~-------------------~l-~~~I  161 (346)
                      +.+-+.=+.+.+++.+.|+++|.+.-      ++|..-+.+..       .++.                   .+ ...+
T Consensus       491 l~iEdG~ls~A~~~Lr~AQ~aL~eAL~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~~~~~~~~~~~~~~~l~~~dL  570 (851)
T TIGR02302       491 LGIEDGDLSDAERRLRAAQDALKDALERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDL  570 (851)
T ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccccCCccccccCHHHH
Confidence            33335557789999999999997642      22221111111       1111                   01 3448


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy4154         162 GKKLAKAEELGAEGFVEESLKLMTEIEDL  190 (346)
Q Consensus       162 ~~~l~~aE~LGeeG~VdeA~~~~~~~e~l  190 (346)
                      +.||..+|+|.++|..++|+.+|++++.+
T Consensus       571 q~Mmd~ieela~~G~~~~A~qlL~qlq~m  599 (851)
T TIGR02302       571 QNMMDQIENLARSGDRDQAKQLLSQLQQM  599 (851)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            89999999999999999999999887644

Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.

>KOG0250|consensus

Probab=84.34  E-value=76  Score=36.38  Aligned_cols=21  Identities=19%  Similarity=0.418  Sum_probs=15.2

Q ss_pred             CCCcchhhhhhcCCChhhhhh
Q psy4154          25 FFDSKVCKSFLLTCCPHEILS   45 (346)
Q Consensus        25 ~~D~~VCk~fL~g~CPhdLF~   45 (346)
                      |=..+-=|.||..+=|-|.|.
T Consensus       181 ~lsQD~aR~FL~~~~p~dkYk  201 (1074)
T KOG0250|consen  181 VLSQDAARSFLANSNPKDKYK  201 (1074)
T ss_pred             hhcHHHHHHHHhcCChHHHHH
Confidence            344466789999998988753

>PRK02224 chromosome segregation protein; Provisional

Probab=83.88  E-value=75  Score=35.18  Aligned_cols=12  Identities=17%  Similarity=0.412  Sum_probs=9.0

Q ss_pred             ccccccchhhhc
Q psy4154         215 LRVCEVCSAYLG  226 (346)
Q Consensus       215 ~~vCdVCga~L~  226 (346)
                      -..|++||.-+.
T Consensus       451 ~~~Cp~C~r~~~  462 (880)
T PRK02224        451 AGKCPECGQPVE  462 (880)
T ss_pred             cccCCCCCCcCC
Confidence            368999998543

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=82.77  E-value=44  Score=31.70  Aligned_cols=90  Identities=11%  Similarity=0.192  Sum_probs=55.9

Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q psy4154         109 YYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLS---AEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMT  185 (346)
Q Consensus       109 ~yE~e~~~~L~~~I~dcdRkI~~ak~RLe~~~~~~~---~~~~~~~~~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~  185 (346)
                      .+|.+ +..|..-+....+++.++..+-........   .........|..+...|..++.++..||..|..-....+-.
T Consensus        49 ~~e~~-l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~  127 (264)
T PF06008_consen   49 PLEKE-LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQR  127 (264)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHH
Confidence            45544 555566666667777666666554433222   22345567888999999999999999999544444444444


Q ss_pred             HHHHHHHHHHHHHH
Q psy4154         186 EIEDLRKKKAEAED  199 (346)
Q Consensus       186 ~~e~lka~~deL~~  199 (346)
                      ..+..+.++.++..
T Consensus       128 ~l~ea~~mL~emr~  141 (264)
T PF06008_consen  128 ALAEAQRMLEEMRK  141 (264)
T ss_pred             HHHHHHHHHHHHHh
Confidence            44444455555543

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli

Probab=80.62  E-value=6.4  Score=32.51  Aligned_cols=31  Identities=23%  Similarity=0.274  Sum_probs=28.3

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHhhhcCCCC
Q psy4154         309 LAKAEELGAEGFVEESLKLMTEQTSSCSPGH  339 (346)
Q Consensus       309 l~eaE~LGeeG~VdeA~~l~~~~e~l~~~~~  339 (346)
                      +..++.+.+.|++++|...+.+++.|..+||
T Consensus        69 id~a~~~~~~G~l~~AK~~l~~l~~lR~eyH   99 (103)
T PF07361_consen   69 IDKAEALAEAGKLDEAKAALKKLDDLRKEYH   99 (103)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            4567889999999999999999999999988

In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	346
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 8e-10
 Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 33/172 (19%)

Query: 98  DYEKASKNRDYYYDIDAMEH-LQAFISDCD-RRTELAKQRLLETQEVLSAEVAEKANAVH 155
           D+E  +    Y Y  D +     AF+ + D +  +   + +L  +E+    +    +AV 
Sbjct: 8   DFE--TGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVS 62

Query: 156 QLAEDIGKKLAKAEELGAEGFVEESLK-----LMTEIEDLRKKKAEAEDTYRNSMPASSY 210
                    L+K EE   + FVEE L+     LM+ I      K E       SM    Y
Sbjct: 63  GTLRLFWTLLSKQEE-MVQKFVEEVLRINYKFLMSPI------KTEQRQP---SMMTRMY 112

Query: 211 QQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAMEHL 262
            +Q+ R          ++++++  A +   +L   ++K+R+ L EL+  +++
Sbjct: 113 IEQRDR----------LYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAKNV 153

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 59/318 (18%), Positives = 104/318 (32%), Gaps = 78/318 (24%)

Query: 22  NVKFFDSKVCKSFLLTCCPHEILSSTR----MD-LGECPKIHDLALRADYEKASKNRDY- 75
           NV+  ++K   +F L+C   +IL +TR     D L      H   +  D+   +   D  
Sbjct: 252 NVQ--NAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTH---ISLDHHSMTLTPDEV 303

Query: 76  ------YYDIDRMDL-GECPKIHDLALR--ADYEKASKNR-DYY--YDIDAMEH-LQAFI 122
                 Y D    DL  E    +   L   A+  +      D +   + D +   +++ +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 123 SDCDRRTELAKQRLLETQEVL--SAEVAEK------ANAVHQLAEDIGKKLAKAEELGAE 174
           +  +   E   +++ +   V   SA +          + +      +  KL K       
Sbjct: 364 NVLE-PAEY--RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY------ 414

Query: 175 GFVEESLKLMT-EIEDLR---KKKAEAEDTYRNSMPASSYQQQKLRVCEVCSA------- 223
             VE+  K  T  I  +    K K E E     S+    Y   K    +           
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 224 --YLGIHDNDRRLADHFGGK----LHLGFI--KIREK----------LAELQAMEHLQAF 265
             ++G H  +    +         L   F+  KIR            L  LQ ++  + +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533

Query: 266 ISDCDRRTELAKQRLLET 283
           I D D + E    RL+  
Sbjct: 534 ICDNDPKYE----RLVNA 547

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	89.14
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	81.19

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=89.14  E-value=29  Score=42.71  Aligned_cols=23  Identities=13%  Similarity=0.183  Sum_probs=12.8

Q ss_pred             HHHHHHHHhhhHHHHHHHHHhhh
Q psy4154         259 MEHLQAFISDCDRRTELAKQRLL  281 (346)
Q Consensus       259 ~r~L~~~i~d~DRrI~~ak~RL~  281 (346)
                      +..++..+.+++.+|..-++.++
T Consensus      2030 L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A         2030 QDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445556666666655555554

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=81.19  E-value=18  Score=28.43  Aligned_cols=11  Identities=36%  Similarity=0.703  Sum_probs=8.7

Q ss_pred             cccccchhhhc
Q psy4154         216 RVCEVCSAYLG  226 (346)
Q Consensus       216 ~vCdVCga~L~  226 (346)
                      .+|+|||.-+.
T Consensus        48 ~~CPvCgs~l~   58 (112)
T 1l8d_A           48 GKCPVCGRELT   58 (112)
T ss_dssp             EECTTTCCEEC
T ss_pred             CCCCCCCCcCC
Confidence            58999997654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	93.37
d256ba_	106	Cytochrome b562 {Escherichia coli [TaxId: 562]}	93.23
d256ba_	106	Cytochrome b562 {Escherichia coli [TaxId: 562]}	89.13

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.013  Score=34.85  Aligned_cols=24  Identities=29%  Similarity=0.843  Sum_probs=19.4

Q ss_pred             cchhhhhhcCCChhhhhhhCccCCCCCCccccH
Q psy4154          28 SKVCKSFLLTCCPHEILSSTRMDLGECPKIHDL   60 (346)
Q Consensus        28 ~~VCk~fL~g~CPhdLF~nTk~dlG~C~k~H~~   60 (346)
                      .++||+|+-|+|       ||.+  .|+.+|++
T Consensus         6 kelCKfYvqGyC-------trge--nC~ymH~e   29 (29)
T d2cqea2           6 RELCKFYITGFC-------ARAE--NCPYMHGD   29 (29)
T ss_dssp             CSBCTTTTTTCC-------SCST--TCSSBSSS
T ss_pred             hhhhhhheeeee-------cCCc--CcccccCC
Confidence            468999999999       5554  59998874

>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Cytochromes
family: Cytochrome b562
domain: Cytochrome b562
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.05  Score=42.18  Aligned_cols=41  Identities=20%  Similarity=0.207  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhhcCCCC
Q psy4154         298 VHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEQTSSCSPGH  339 (346)
Q Consensus       298 i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~~e~l~~~~~  339 (346)
                      ...++ .+...+..|+.|.+.|++++|..++.+++.+..++|
T Consensus        62 ~~g~d-~L~~~ld~i~~la~~G~l~eAk~~l~~l~~~r~~YH  102 (106)
T d256ba_          62 RHGFD-ILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYH  102 (106)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            34444 477788999999999999999999999999998887

>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Cytochromes
family: Cytochrome b562
domain: Cytochrome b562
species: Escherichia coli [TaxId: 562]

Probab=89.13  E-value=0.54  Score=35.99  Aligned_cols=34  Identities=21%  Similarity=0.255  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q psy4154         160 DIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKK  193 (346)
Q Consensus       160 ~I~~~l~~aE~LGeeG~VdeA~~~~~~~e~lka~  193 (346)
                      ++...+..++.|.++|++++|..++.+++.++.+
T Consensus        67 ~L~~~ld~i~~la~~G~l~eAk~~l~~l~~~r~~  100 (106)
T d256ba_          67 ILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNA  100 (106)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4667778999999999999999999999877644