Diaphorina citri psyllid: psy4218


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520
MASTSTNVPVSEILRTKASEDDEPKKKSREDWRKAKELEEARKAGTAPAAVDEHGRDINPHIPQYISSAPWYFGSKGPTLQHQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGACENCGAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRDRWAGYDPSNHKAIVEHYQKIEEAKRELRADKLDAGVSIDNRGSKEGDEDKDDLEEDEDKYVDEVDMPGTKVDSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDYAGENFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELLKKEYEEKKEEFKKEVSSSVIDKYGGAEHLQAPPKALLLAQTEDYVEYSRYGKVIKMYIPTIIPVYGGPGGIMECGDTREAGLATSSVVGASLGPPPGIMNRPEHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKRSYNSMISVKEPTMDSDRGNCNC
cccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHcccccccccccEECccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHccccccccEEEcccccEEEcccccccccccccccHHccccccccccccHHHHccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHcccccc
********************************************************DINPHIPQYISSAPWYFGSKGPTL******************WY*************RKGACENCGAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRDRWAGYDPSNHKAIVEHYQ************************************************************VRNLRIREDTAKYLRNLDPNSAYYDP******************VDYAGENFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELL*********************KYGGAEHLQAPPKALLLAQTEDYVEYSRYGKVIKMYIPTIIPVYGGPGGIMECGDTREAGLAT**********************************************************************************SMISVKEP***********
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MASTSTNVPVSEILRTKASEDDEPKKKSREDWRKAKELEEARKAGTAPAAVDEHGRDINPHIPQYISSAPWYFGSKGPTLQHQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGACENCGAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRDRWAGYDPSNHKAxxxxxxxxxxxxxxxxxxxxxAGVSIDNRGSKEGDEDKDDLEEDEDKYVDEVDMPGTKVDSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDYAGENFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKxxxxxxxxxxxxxxxxxxxxxxxxxKYGGAEHLQAPPKALLLAQTEDYVEYSRYGKVIKMYIPTIIPVYGGPGGIMECGDTREAGLATSSVVGASLGPPPGIMNRPEHQDEDEEDSGHKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRSYNSMISVKEPTMDSDRGNCNC

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Pre-mRNA-splicing factor SLU7 Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Required for holding exon 1 properly in the spliceosome and for correct AG identification when more than one possible AG exists in 3'-splicing site region. May be involved in the activation of proximal AG. Probably also involved in alternative splicing regulation.very confidentQ8BHJ9
Pre-mRNA-splicing factor SLU7 Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Required for holding exon 1 properly in the spliceosome and for correct AG identification when more than one possible AG exists in 3'-splicing site region. May be involved in the activation of proximal AG. Probably also involved in alternative splicing regulation.very confidentQ80ZG5
Pre-mRNA-splicing factor SLU7 Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Required for holding exon 1 properly in the spliceosome and for correct AG identification when more than one possible AG exists in 3'-splicing site region.very confidentQ5U3F2

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0008270 [MF]zinc ion bindingprobableGO:0043169, GO:0046914, GO:0043167, GO:0003674, GO:0005488, GO:0046872
GO:0030628 [MF]pre-mRNA 3'-splice site bindingprobableGO:0036002, GO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0030532 [CC]small nuclear ribonucleoprotein complexprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0044422
GO:0033554 [BP]cellular response to stressprobableGO:0051716, GO:0050896, GO:0009987, GO:0006950, GO:0044763, GO:0008150, GO:0044699
GO:0016607 [CC]nuclear speckprobableGO:0044446, GO:0016604, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0005575, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422
GO:0000386 [MF]second spliceosomal transesterification activityprobableGO:0003824, GO:0003674
GO:0000380 [BP]alternative mRNA splicing, via spliceosomeprobableGO:0090304, GO:0034641, GO:0006807, GO:0044237, GO:1901360, GO:0006139, GO:0044260, GO:0071704, GO:0010467, GO:0008380, GO:0044238, GO:0009987, GO:0006725, GO:0000375, GO:0000377, GO:0008150, GO:0008152, GO:0046483, GO:0016070, GO:0016071, GO:0000398, GO:0043170, GO:0006396, GO:0006397
GO:0006886 [BP]intracellular protein transportprobableGO:0033036, GO:0034613, GO:0046907, GO:0070727, GO:0006810, GO:0045184, GO:0008104, GO:0044763, GO:0044699, GO:0071702, GO:0015031, GO:0008150, GO:0009987, GO:0051234, GO:0051179, GO:0051649, GO:0051641
GO:0000389 [BP]mRNA 3'-splice site recognitionprobableGO:0022607, GO:0000245, GO:0043933, GO:0090304, GO:0034641, GO:0006807, GO:0044237, GO:0034622, GO:0071840, GO:0006139, GO:0071826, GO:0044260, GO:0016043, GO:0065003, GO:0071704, GO:0010467, GO:0022618, GO:1901360, GO:0022613, GO:0008380, GO:0044238, GO:0009987, GO:0006725, GO:0000375, GO:0000377, GO:0008150, GO:0008152, GO:0046483, GO:0016070, GO:0016071, GO:0000398, GO:0043170, GO:0044085, GO:0006376, GO:0006396, GO:0006397
GO:0005737 [CC]cytoplasmprobableGO:0044424, GO:0005575, GO:0044464, GO:0005623, GO:0005622
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0071013 [CC]catalytic step 2 spliceosomeprobableGO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0007052 [BP]mitotic spindle organizationprobableGO:0006996, GO:0007017, GO:0007010, GO:0000278, GO:0071822, GO:0043933, GO:0071840, GO:0009987, GO:0044763, GO:0016043, GO:0008150, GO:0007051, GO:0022402, GO:0044699, GO:0000226, GO:0007049

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1NC8, chain A
Confidence level:probable
Coverage over the Query: 115-139
View the alignment between query and template
View the model in PyMOL