Psyllid ID: psy4218

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

MASTSTNVPVSEILRTKASEDDEPKKKSREDWRKAKELEEARKAGTAPAAVDEHGRDINPHIPQYISSAPWYFGSKGPTLQHQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGACENCGAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRDRWAGYDPSNHKAIVEHYQKIEEAKRELRADKLDAGVSIDNRGSKEGDEDKDDLEEDEDKYVDEVDMPGTKVDSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDYAGENFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELLKKEYEEKKEEFKKEVSSSVIDKYGGAEHLQAPPKALLLAQTEDYVEYSRYGKVIKMYIPTIIPVYGGPGGIMECGDTREAGLATSSVVGASLGPPPGIMNRPEHQDEDEEDSGHKKQKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKRSYNSMISVKEPTMDSDRGNCNC

cccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHcccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccccccccEEEcccccEEEccccccccccccccHHHccccccccccccHHHHHcccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccc

cccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccEEEcccccccccccccccHcccHcHHHHHHHcccccccHHHHHHccccHcccccccccccHcccccccccEEcccccccccEEcccHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccccccccHHHHHHHcccccccccccccEEEHccEEHHHHHHHHHccccccccccccccccccccccccccHHHHHHccccEEEccccHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccHHHHHcccccEEEEccccEEEEEEEccccEEEccccccHHcccccccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHcccccc

maststnvpvseilrtkaseddepkkkSREDWRKAKELEEARkagtapaavdehgrdinphipqyissapwyfgskgptlqhqriqpdqekpraslDEWYKRGVDTTSQAKKFRKGacencgamthkkkdcleRPRKVLAKYSNAQiacdefvqpkliqdydskrdrwagydpsnhkAIVEHYQKIEEAKRELRADKldagvsidnrgskegdedkddleededkyvdevdmpgtkvdskqritVRNLRIREDTAKYLRnldpnsayydpktrsmrdnpyetvanpedvdyagenfvrfsgdtrkHATAQLFAWEAYEKGvdvhvlaeptkLELLKKEYEEKKEEFKKEVSSSVidkyggaehlqappKALLLAQTEDYVEYSRYGKVIKMYiptiipvyggpggimecgdtreaglATSSvvgaslgpppgimnrpehqdedeedsghkkqkknkkskKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKRSYNSmisvkeptmdsdrgncnc

maststnvpvseilrtkaseddepkkksredWRKAKeleearkagtapaavdehgrdINPHIPQYISSAPWYFGSKGPTLQHQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGAcencgamthkkkdclerPRKVLAKYSNaqiacdefvqpkliQDYDSKRDRWAGYDPSNHKAIVEHYQKIEEAKRElradkldagvsidnrgskegdedkddleededkyvdevdmpgtkvdskqritvrnlriredtakylrnldpnsayydpktrsmrdnPYETVANPEDVDYAGENFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELLKKEYEEKKEEFKKEVSSSVIDKYGGAEHLQAPPKALLLAQTEDYVEYSRYGKVIKMYIPTIIPVYGGPGGIMECGDTREAGLATSSVVGASLGPPPGIMNRPEhqdedeedsghkkqkknkkskkkkkekekSAEEKmkealkkeeeeqreadrllrmderkrsynsmisvkeptmdsdrgncnc

MASTSTNVPVSEILRTKASEDDEPKKKSREDWRKAKELEEARKAGTAPAAVDEHGRDINPHIPQYISSAPWYFGSKGPTLQHQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGACENCGAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRDRWAGYDPSNHKAIVEHYQKIEEAKRELRADKLDAGVSIDNRGSkegdedkddleededkyvdevdMPGTKVDSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDYAGENFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTklellkkeyeekkeefkkeVSSSVIDKYGGAEHlqappkalllaqTEDYVEYSRYGKVIKMYIPTIIPVYGGPGGIMECGDTREAGLATSSVVGASLGPPPGIMNRPEHQDEDEEDSGHkkqkknkkskkkkkekeksaeekmkealkkeeeeQREADRLLRMDERKRSYNSMISVKEPTMDSDRGNCNC

************************************************************HIPQYISSAPWYFG************************WY*************RKGACENCGAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRDRWAGYDPSNHKAIVEHYQ************************************************************VRNLRIREDTAKYLR*****************************VDYAGENFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELL*********************KYGGAEHLQAPPKALLLAQTEDYVEYSRYGKVIKMYIPTIIPVYGGPGGIMECGDTRE**********************************************************************************************************

********************************************************DINPHIPQYISSAPWYFGSKGPTL*****************************************GAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRDRWAGYDPSNHKAIVEHYQ*****************************************************************IREDTAKYLRNLDPNSAYYDP********************YAGENFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLA****************************************************VEYSRYGKVIKMYIPTIIPVYGGPGGIMECGDTREAGLAT**********************************************************************************SMISVKEPTMDSDRGNCN*

*********VSEILRTK***************RKAKEL*************DEHGRDINPHIPQYISSAPWYFGSKGPT**************ASLDEWYKRGVDTTSQAKKFRKGACENCGAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRDRWAGYDPSNHKAIVEHYQKIEEAKRELRADKLDAGVSIDNR****************DKYVDEVDMPGTKVDSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDYAGENFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELLKKEYE*************VIDKYGGAEHLQAPPKALLLAQTEDYVEYSRYGKVIKMYIPTIIPVYGGPGGIMECGDTREAGLATSSVVGASLGPPPGIMNRP**************************************************DRLLRMDERKRSYNSMISVKEP***********

***************************************EARKAGT*P******GRDINPHIPQYISSAPWYFGSKGPTLQHQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGACENCGAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRDRWAGYDPSNHKAIVEHYQKIEEAKRELRADKLDA********************************PGTKVDSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDYAGENFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELLKKEYEEKKEEFKKEVSSSVIDKYGGAEHLQAPPKALLLAQTEDYVEYSRYGKVIKMYIPTIIPVYGGPGGIMECGDTREAGLATSSVVGASL******************************************EEKMKEALKKEEEEQREADRLLRMDERKRSYNSMIS***************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MASTSTNVPVSEILRTKASEDDEPKKKSREDWRKAKELEEARKAGTAPAAVDEHGRDINPHIPQYISSAPWYFGSKGPTLQHQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGACENCGAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRDRWAGYDPSNHKAxxxxxxxxxxxxxxxxxxxxxAGVSIDNRGSKEGDEDKDDLEEDEDKYVDEVDMPGTKVDSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDYAGENFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKxxxxxxxxxxxxxxxxxxxxxxxxxKYGGAEHLQAPPKALLLAQTEDYVEYSRYGKVIKMYIPTIIPVYGGPGGIMECGDTREAGLATSSVVGASLGPPPGIMNRPEHQDEDEEDSGHKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRSYNSMISVKEPTMDSDRGNCNC

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		520	2.2.26 [Sep-21-2011]
Q9VAQ7		574	Pre-mRNA-splicing factor	yes	N/A	0.725	0.656	0.670	1e-149
Q8BHJ9		585	Pre-mRNA-splicing factor	yes	N/A	0.961	0.854	0.507	1e-141
Q80ZG5		586	Pre-mRNA-splicing factor	yes	N/A	0.965	0.856	0.508	1e-140
O95391		586	Pre-mRNA-splicing factor	yes	N/A	0.976	0.866	0.504	1e-137
Q5ZIG2		564	Pre-mRNA-splicing factor	yes	N/A	0.705	0.650	0.649	1e-137
Q5U3F2		571	Pre-mRNA-splicing factor	yes	N/A	0.936	0.852	0.526	1e-137
Q4R4P2		586	Pre-mRNA-splicing factor	N/A	N/A	0.978	0.868	0.500	1e-136
Q3ZBE5		586	Pre-mRNA-splicing factor	yes	N/A	0.709	0.629	0.621	1e-136
Q3KQD1		580	Pre-mRNA-splicing factor	N/A	N/A	0.936	0.839	0.495	1e-133
Q21278		647	Pre-mRNA-splicing factor	yes	N/A	0.728	0.585	0.524	1e-111

>sp\|Q9VAQ7\|SLU7_DROME Pre-mRNA-splicing factor Slu7 OS=Drosophila melanogaster GN=Slu7 PE=1 SV=2	Back alignment and function desciption

 Score =  529 bits (1362), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/392 (67%), Positives = 312/392 (79%), Gaps = 15/392 (3%)

Query: 1   MASTSTNVPVSEILRTKASED--DEPKKKSREDWRKAKELEEARKAGTAPAAVDEHGRDI 58
           M+S     PVS+I+ +K  +D  +EPKKKSREDWRKAKELEEARKAGTAPAAVDE GRDI
Sbjct: 1   MSSGPMRTPVSQIILSKHDQDAEEEPKKKSREDWRKAKELEEARKAGTAPAAVDEEGRDI 60

Query: 59  NPHIPQYISSAPWYFGSKGPTLQHQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGAC 118
           NPHIPQYIS+APWY+GS GPTL+HQR  P  E  +  LD+   +G++T     KFRKGAC
Sbjct: 61  NPHIPQYISNAPWYYGSAGPTLKHQR--PQHEDEQGQLDKRAPKGLNTARIITKFRKGAC 118

Query: 119 ENCGAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRDRWAGYDPSNHKA 178
           ENCGA+THK+KDCLERPRKV AKY+ + +  DE +  +   +YD KRDRW+ YDP+NH+ 
Sbjct: 119 ENCGAVTHKRKDCLERPRKVQAKYAESIVVHDEHLVNEAAVNYDEKRDRWSSYDPANHRE 178

Query: 179 IVEHYQKIEEAKRELRADKLDAGVSIDNRGSKEGDEDKDDLEEDEDKYVDEVDMPGTKVD 238
           I+E Y+K+EEAKR+L+A+KL            + D +  D E +EDKYVDEVDMPGTKVD
Sbjct: 179 IIEEYEKVEEAKRQLKAEKL----------KNDPDAEISDEEGNEDKYVDEVDMPGTKVD 228

Query: 239 SKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDYAGENFVR 298
           SKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNP   V   E+ ++AGENFVR
Sbjct: 229 SKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPNPAVPE-EEAEFAGENFVR 287

Query: 299 FSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELLKKEYEEKKEEFKKEVSSSVIDKY 358
           FSGDT   ATAQLFAWEA+ KGVDVH+LAEPTKLELL+KEYE+KKE+FK    + +++KY
Sbjct: 288 FSGDTTAQATAQLFAWEAHGKGVDVHLLAEPTKLELLQKEYEQKKEQFKSSTKTHIVEKY 347

Query: 359 GGAEHLQAPPKALLLAQTEDYVEYSRYGKVIK 390
           GG EHLQ PPK+LLLAQTE+Y+EYSR GKVIK
Sbjct: 348 GGEEHLQVPPKSLLLAQTEEYIEYSRSGKVIK 379

Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron.
Drosophila melanogaster (taxid: 7227)

>sp\|Q8BHJ9\|SLU7_MOUSE Pre-mRNA-splicing factor SLU7 OS=Mus musculus GN=Slu7 PE=1 SV=1	Back alignment and function description

>sp\|Q80ZG5\|SLU7_RAT Pre-mRNA-splicing factor SLU7 OS=Rattus norvegicus GN=Slu7 PE=2 SV=2	Back alignment and function description

>sp\|O95391\|SLU7_HUMAN Pre-mRNA-splicing factor SLU7 OS=Homo sapiens GN=SLU7 PE=1 SV=2	Back alignment and function description

>sp\|Q5ZIG2\|SLU7_CHICK Pre-mRNA-splicing factor SLU7 OS=Gallus gallus GN=SLU7 PE=2 SV=1	Back alignment and function description

>sp\|Q5U3F2\|SLU7_DANRE Pre-mRNA-splicing factor SLU7 OS=Danio rerio GN=slu7 PE=2 SV=1	Back alignment and function description

>sp\|Q4R4P2\|SLU7_MACFA Pre-mRNA-splicing factor SLU7 OS=Macaca fascicularis GN=SLU7 PE=2 SV=1	Back alignment and function description

>sp\|Q3ZBE5\|SLU7_BOVIN Pre-mRNA-splicing factor SLU7 OS=Bos taurus GN=SLU7 PE=2 SV=2	Back alignment and function description

>sp\|Q3KQD1\|SLU7_XENLA Pre-mRNA-splicing factor SLU7 OS=Xenopus laevis GN=slu7 PE=2 SV=2	Back alignment and function description

>sp\|Q21278\|SLU7_CAEEL Pre-mRNA-splicing factor SLU7 OS=Caenorhabditis elegans GN=K07C5.6 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		520
307175300		583	Pre-mRNA-splicing factor Slu7 [Camponotu	0.961	0.857	0.581	1e-178
307213761		577	Pre-mRNA-splicing factor SLU7 [Harpegnat	0.955	0.861	0.572	1e-175
383847959		574	PREDICTED: pre-mRNA-splicing factor SLU7	0.955	0.865	0.585	1e-174
350420652		573	PREDICTED: pre-mRNA-splicing factor SLU7	0.959	0.870	0.572	1e-172
322786470		574	hypothetical protein SINV_04701 [Solenop	0.953	0.864	0.574	1e-172
340724054		573	PREDICTED: pre-mRNA-splicing factor SLU7	0.959	0.870	0.572	1e-172
332023027		572	Pre-mRNA-splicing factor SLU7 [Acromyrme	0.726	0.660	0.735	1e-168
380024445		445	PREDICTED: pre-mRNA-splicing factor Slu7	0.725	0.847	0.728	1e-166
66547894		445	PREDICTED: pre-mRNA-splicing factor Slu7	0.725	0.847	0.728	1e-166
91077680		551	PREDICTED: similar to step ii splicing f	0.715	0.675	0.723	1e-166

>gi\|307175300\|gb\|EFN65330.1\| Pre-mRNA-splicing factor Slu7 [Camponotus floridanus]	Back alignment and taxonomy information

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 333/573 (58%), Positives = 408/573 (71%), Gaps = 73/573 (12%)

Query: 1   MASTSTNVPVSEILRTKASEDDEPKKKSREDWRKAKELEEARKAGTAPAAVDEHGRDINP 60
           MA++S NV VS IL+ K+S +DEP+KKSREDWRKAKELEEARKAGTAPAAVDE G+DINP
Sbjct: 1   MANSSANVTVSSILKNKSSFEDEPRKKSREDWRKAKELEEARKAGTAPAAVDEEGKDINP 60

Query: 61  HIPQYISSAPWYFGSKGPTLQHQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGACEN 120
           HIPQYIS+ PWYFG++GPTL+HQR QP++++  +S+DEWY RGVD+   A K+RKGACEN
Sbjct: 61  HIPQYISATPWYFGAQGPTLKHQRPQPEKQRQFSSIDEWYNRGVDSARVAIKYRKGACEN 120

Query: 121 CGAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRDRWAGYDPSNHKAIV 180
           CGAMTHK+KDC+ERPRKV AKY+N++IA DEF QP+L  DYD KRDRWAGYDPS H+AIV
Sbjct: 121 CGAMTHKRKDCMERPRKVGAKYTNSKIAPDEFTQPELSMDYDGKRDRWAGYDPSEHRAIV 180

Query: 181 EHYQKIEEAKRELRADKLDAGVSIDNRGSKEGDEDKDDLEEDEDKYVDEVDMPGTKVDSK 240
           E YQKIEEAKR++RADKLDA          E + D+ D ++DEDKYVDEVDMPGTKVDSK
Sbjct: 181 EEYQKIEEAKRQMRADKLDA----------EEENDEQDSDKDEDKYVDEVDMPGTKVDSK 230

Query: 241 QRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDYAGENFVRFS 300
           QRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPY       +VDY GENFVRFS
Sbjct: 231 QRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPY--TGTEREVDYKGENFVRFS 288

Query: 301 GDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELLKKEYEEKKEEFKKEVSSSVIDKYGG 360
           GDT++HA AQLFAWEA+EKGVDVH+LAEPTKLELLK+EY++K++E K +   S+I++YGG
Sbjct: 289 GDTQQHANAQLFAWEAHEKGVDVHLLAEPTKLELLKQEYDKKRDELKDKARDSIIERYGG 348

Query: 361 AEHLQAPPKALLLAQTEDYVEYSRYGKVIK--------------MYIPTIIPVYG----- 401
            +HL+A PK+LLLAQTE YVEYSRYGK+IK              +Y    + V+G     
Sbjct: 349 EKHLKALPKSLLLAQTEHYVEYSRYGKIIKGQDRQVIRSKYEEDIYPNNHMSVWGSYWQD 408

Query: 402 GPGGIMECGD-------TREAGLATSSVVG--ASLGPPPGIMNRPEHQDEDEED------ 446
           G  G   C         T E+G   +  +   ++L   P + N  E  +   ++      
Sbjct: 409 GKWGYKCCYSFIKNSYCTGESGKRAAEAINDSSTLDKVPSVRNEMEETNSKLDNTVVNDN 468

Query: 447 -------------SGHKKQKKNKKS--------------KKKKKEKEKSAEEKMKEALKK 479
                        +G  K +K  K+              K KK+ +EK  E+K+KEAL+K
Sbjct: 469 RSSSSESSSEDEDTGKTKTEKQSKAAKRKLKKQKRKESRKNKKQNEEKQDEDKLKEALRK 528

Query: 480 EEEEQREADRLLRMDERKRSYNSMISVKEPTMD 512
           EEE  R+ ++LL+M ERKR YNSM   KE T +
Sbjct: 529 EEENARKMEKLLKMSERKRPYNSMYETKELTTE 561

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|307213761\|gb\|EFN89099.1\| Pre-mRNA-splicing factor SLU7 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|383847959\|ref\|XP_003699620.1\| PREDICTED: pre-mRNA-splicing factor SLU7-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|350420652\|ref\|XP_003492579.1\| PREDICTED: pre-mRNA-splicing factor SLU7-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|322786470\|gb\|EFZ12919.1\| hypothetical protein SINV_04701 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|340724054\|ref\|XP_003400400.1\| PREDICTED: pre-mRNA-splicing factor SLU7-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|332023027\|gb\|EGI63292.1\| Pre-mRNA-splicing factor SLU7 [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|380024445\|ref\|XP_003696006.1\| PREDICTED: pre-mRNA-splicing factor Slu7-like [Apis florea]	Back alignment and taxonomy information

>gi\|66547894\|ref\|XP_623948.1\| PREDICTED: pre-mRNA-splicing factor Slu7 [Apis mellifera]	Back alignment and taxonomy information

>gi\|91077680\|ref\|XP_974637.1\| PREDICTED: similar to step ii splicing factor slu7 [Tribolium castaneum] gi\|270001533\|gb\|EEZ97980.1\| hypothetical protein TcasGA2_TC000375 [Tribolium castaneum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		520
FB\|FBgn0039626		574	Slu7 "Slu7" [Drosophila melano	0.717	0.649	0.585	2.2e-122
UNIPROTKB\|F1NNB9		564	SLU7 "Pre-mRNA-splicing factor	0.705	0.650	0.566	1.6e-113
UNIPROTKB\|Q5ZIG2		564	SLU7 "Pre-mRNA-splicing factor	0.705	0.650	0.566	1.6e-113
ZFIN\|ZDB-GENE-041114-62		619	slu7 "SLU7 splicing factor hom	0.719	0.604	0.555	1.1e-112
UNIPROTKB\|F1NRP0		582	SLU7 "Pre-mRNA-splicing factor	0.709	0.634	0.550	1e-111
UNIPROTKB\|O95391		586	SLU7 "Pre-mRNA-splicing factor	0.75	0.665	0.526	1.3e-111
UNIPROTKB\|Q3ZBE5		586	SLU7 "Pre-mRNA-splicing factor	0.709	0.629	0.546	1.6e-111
UNIPROTKB\|E2RRD5		633	SLU7 "Uncharacterized protein"	0.709	0.582	0.546	2.1e-111
UNIPROTKB\|F1RR54		586	SLU7 "Uncharacterized protein"	0.709	0.629	0.544	2.1e-111
MGI\|MGI:2385598		585	Slu7 "SLU7 splicing factor hom	0.734	0.652	0.536	2.1e-111

FB\|FBgn0039626 Slu7 "Slu7" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1150 (409.9 bits), Expect = 2.2e-122, Sum P(2) = 2.2e-122
 Identities = 232/396 (58%), Positives = 276/396 (69%)

Query:     1 MASTSTNVPVSEILRTKASED--DEPKKKSREDWRKAKELEEARKAGTAPAAVDEHGRDI 58
             M+S     PVS+I+ +K  +D  +EPKKKSREDWRKAKELEEARKAGTAPAAVDE GRDI
Sbjct:     1 MSSGPMRTPVSQIILSKHDQDAEEEPKKKSREDWRKAKELEEARKAGTAPAAVDEEGRDI 60

Query:    59 NPHIPQYISSAPWYFGSKGPTLQHQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGAC 118
             NPHIPQYIS+APWY+GS GPTL+HQR  P  E  +  LD+   +G++T     KFRKGAC
Sbjct:    61 NPHIPQYISNAPWYYGSAGPTLKHQR--PQHEDEQGQLDKRAPKGLNTARIITKFRKGAC 118

Query:   119 ENCGAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQDYDSKRDRWAGYDPSNHKA 178
             ENCGA+THK+KDCLERPRKV AKY+ + +  DE +  +   +YD KRDRW+ YDP+NH+ 
Sbjct:   119 ENCGAVTHKRKDCLERPRKVQAKYAESIVVHDEHLVNEAAVNYDEKRDRWSSYDPANHRE 178

Query:   179 IVEHYQKIEEAKRELRADKL----DAGVSIDNRGSXXXXXXXXXXXXXXXXXXXXXXMPG 234
             I+E Y+K+EEAKR+L+A+KL    DA +S D  G+                      MPG
Sbjct:   179 IIEEYEKVEEAKRQLKAEKLKNDPDAEIS-DEEGNEDKYVDEVD-------------MPG 224

Query:   235 TKVDSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDYAGE 294
             TKVDSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNP   V   E+ ++AGE
Sbjct:   225 TKVDSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPNPAVPE-EEAEFAGE 283

Query:   295 NFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTXXXXXXXXXXXXXXXXXXXVSSSV 354
             NFVRFSGDT   ATAQLFAWEA+ KGVDVH+LAEPT                     + +
Sbjct:   284 NFVRFSGDTTAQATAQLFAWEAHGKGVDVHLLAEPTKLELLQKEYEQKKEQFKSSTKTHI 343

Query:   355 IDKYGGAEHXXXXXXXXXXXXTEDYVEYSRYGKVIK 390
             ++KYGG EH            TE+Y+EYSR GKVIK
Sbjct:   344 VEKYGGEEHLQVPPKSLLLAQTEEYIEYSRSGKVIK 379

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IMP

UNIPROTKB\|F1NNB9 SLU7 "Pre-mRNA-splicing factor SLU7" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZIG2 SLU7 "Pre-mRNA-splicing factor SLU7" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041114-62 slu7 "SLU7 splicing factor homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NRP0 SLU7 "Pre-mRNA-splicing factor SLU7" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|O95391 SLU7 "Pre-mRNA-splicing factor SLU7" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3ZBE5 SLU7 "Pre-mRNA-splicing factor SLU7" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RRD5 SLU7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RR54 SLU7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:2385598 Slu7 "SLU7 splicing factor homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BHJ9	SLU7_MOUSE	No assigned EC number	0.5071	0.9615	0.8547	yes	N/A
Q80ZG5	SLU7_RAT	No assigned EC number	0.5081	0.9653	0.8566	yes	N/A
Q3ZBE5	SLU7_BOVIN	No assigned EC number	0.6217	0.7096	0.6296	yes	N/A
Q6ZK48	SLU7_ORYSJ	No assigned EC number	0.4277	0.8846	0.8582	yes	N/A
Q5ZIG2	SLU7_CHICK	No assigned EC number	0.6495	0.7057	0.6507	yes	N/A
Q21278	SLU7_CAEEL	No assigned EC number	0.5240	0.7288	0.5857	yes	N/A
Q9VAQ7	SLU7_DROME	No assigned EC number	0.6709	0.725	0.6567	yes	N/A
Q9SHY8	SLU7A_ARATH	No assigned EC number	0.4238	0.8846	0.8598	yes	N/A
Q4WWR2	SLU7_ASPFU	No assigned EC number	0.3965	0.6153	0.6722	yes	N/A
P0CR52	SLU7_CRYNJ	No assigned EC number	0.5209	0.7153	0.6480	yes	N/A
Q4R4P2	SLU7_MACFA	No assigned EC number	0.5008	0.9788	0.8686	N/A	N/A
Q54TA0	SLU7_DICDI	No assigned EC number	0.4959	0.6846	0.6379	yes	N/A
Q5U3F2	SLU7_DANRE	No assigned EC number	0.5262	0.9365	0.8528	yes	N/A
O95391	SLU7_HUMAN	No assigned EC number	0.5044	0.9769	0.8668	yes	N/A
Q6C9T0	SLU7_YARLI	No assigned EC number	0.3208	0.6307	0.7884	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		520
pfam11708		236	pfam11708, Slu7, Pre-mRNA splicing Prp18-interacti	2e-80

>gnl\|CDD\|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor	Back alignment and domain information

 Score =  250 bits (640), Expect = 2e-80
 Identities = 135/231 (58%), Positives = 165/231 (71%), Gaps = 17/231 (7%)

Query: 160 DYDSKRDRWAGYDPSNHKAIVEHYQKIEEAKRELRADKLDAGVSIDNRGSKEGDEDKDDL 219
           DYD+KRDRW GYDPS +K +VE Y+K+EE +++L+A K D             D D +D 
Sbjct: 3   DYDAKRDRWNGYDPSEYKEVVEEYEKLEELRKKLKAKKEDDSD----------DTDYED- 51

Query: 220 EEDEDKYVDEVDMPGTKVDSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNP 279
            EDE+ Y+DE DM  +  DSK R TVRNLRIREDTAKYL NLD NSAYYDPK+RSMRD+P
Sbjct: 52  -EDEELYLDESDMGDS--DSKTRTTVRNLRIREDTAKYLLNLDSNSAYYDPKSRSMRDDP 108

Query: 280 YETVANPEDVDYAGENFVRFSGDTRKHATAQLFAWEAYEKGVDVHVLAEPTKLELLKKEY 339
               A+PEDV +AG+NFVR SG+  +    Q FAWEA EKG DVH+ A PTKLELL+K+ 
Sbjct: 109 L---ADPEDVLFAGDNFVRLSGEALEFEELQKFAWEAAEKGGDVHLQANPTKLELLRKKE 165

Query: 340 EEKKEEFKKEVSSSVIDKYGGAEHLQAPPKALLLAQTEDYVEYSRYGKVIK 390
           +EKKE+ K +   S+++KYGG EHL  PPK LLL Q+EDYVEY R GK  K
Sbjct: 166 KEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRAGKKKK 216

The spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and U5) and proteins, catalyzes the excision of introns from pre-mRNAs in two successive trans-esterification reactions. Step 2 depends upon integral spliceosome constituents such as U5 snRNA and Prp8 and non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22. ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a conformational change in the spliceosome that leads to protection of the 3'ss from targeted RNase H cleavage. This change, which probably reflects binding of the 3'ss PyAG in the catalytic centre of the spliceosome, requires the ordered recruitment of Slu7, Prp18, and Prp22 to the spliceosome. There is a close functional relationship between Prp8, Prp18, and Slu7, and Prp18 interacts with Slu7, so that together they recruit Prp22 to the spliceosome. Most members of the family carry a zinc-finger of the CCHC-type upstream of this domain. Length = 236

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		520
KOG2560\|consensus		529		100.0
PF11708		239	Slu7: Pre-mRNA splicing Prp18-interacting factor;	100.0
PF00098		18	zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi	89.64

>KOG2560\|consensus	Back alignment and domain information

Probab=100.00  E-value=2.1e-158  Score=1222.99  Aligned_cols=485  Identities=53%  Similarity=0.805  Sum_probs=420.4

Q ss_pred             CCCCCCCCchhHhhhccCCCCCCccccCHHHHHHHHHHHHHHhcCCCCCcccccCCCCCCCcccccccCCcccCCCCCCc
Q psy4218           1 MASTSTNVPVSEILRTKASEDDEPKKKSREDWRKAKELEEARKAGTAPAAVDEHGRDINPHIPQYISSAPWYFGSKGPTL   80 (520)
Q Consensus         1 m~~~~~~~~~s~~~~~~~~~~~~~~~~sre~~rk~keLeeaRKaG~aPa~~De~GkeiNPHIPqYIs~aPWY~~~~~p~L   80 (520)
                      |+.+.++.|+|......   ...++++||++||++++|||+||||+|||+||+.|++||||||+|||++|||+.+.+|+|
T Consensus         1 ~~~~~~~~~~sn~~k~~---~~~~k~Ksr~dhrk~~eleE~rkag~aPaevDe~g~~iNphIP~yis~aPwY~~s~~ptL   77 (529)
T KOG2560|consen    1 MSRNNENRSTSNRNKMQ---LQQAKKKSREDHRKRKELEEARKAGLAPAEVDEKGKDINPHIPEYISKAPWYVHSEGPTL   77 (529)
T ss_pred             CCccccccccchhhHHH---HHHHhhhhhhhhhhhHHHHHHHHhcCCchhhcCCCCCCCccccccccCCCceecccCccc
Confidence            78888888888865433   568899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCccchhhhccCccccccccccccccccccccCCCCccccccCcccccccccCCccCcccccccccccc
Q psy4218          81 QHQRIQPDQEKPRASLDEWYKRGVDTTSQAKKFRKGACENCGAMTHKKKDCLERPRKVLAKYSNAQIACDEFVQPKLIQD  160 (520)
Q Consensus        81 kHQR~~~~~~~~~~~i~~wy~RG~~~~~~atKyRKGACeNCGAmtHkkKDClERPRK~GAk~tg~~Ia~DE~iq~~~~ld  160 (520)
                      +|||+|++....++.++.||.||.+.++++||||||||+|||||||++|||||||||+||+|||.+|++||+||+.+.+|
T Consensus        78 kHQr~~~~epk~m~~~~ewy~rG~kk~~~atkyRKGACeNCGAmtHk~KDCmERPRK~gAk~t~~Nia~De~iq~~~~~d  157 (529)
T KOG2560|consen   78 KHQRPWKEEPKIMGIKDEWYDRGKKKGSVATKYRKGACENCGAMTHKVKDCMERPRKVGAKYTDLNIAPDEKIQSVLELD  157 (529)
T ss_pred             cccCCCccCCccccccchhhhcccccchHHHHHhhhhhhhhhhhhcchHHHhhcchhhcccCCCcccCcccccccccccc
Confidence            99999987666667789999999988899999999999999999999999999999999999999999999999889999


Q ss_pred             cccccCcCCCCCcccHHHHHHHHHHHHHHH-HHHHHhhhhcccccCCCCCCCCCCCCCCCccchhhhccccCCCCC--cc
Q psy4218         161 YDSKRDRWAGYDPSNHKAIVEHYQKIEEAK-RELRADKLDAGVSIDNRGSKEGDEDKDDLEEDEDKYVDEVDMPGT--KV  237 (520)
Q Consensus       161 yDaKRDRWnGYDp~ey~~Vveeyek~e~~r-~~~k~~~l~~~~~~~~~~~~~~~~~~~~~d~DedkY~de~d~~g~--~~  237 (520)
                      ||+||||||||||++|++||++|+++++++ +.+++++++..     .  ...+++++.++-|+++|+|.++|++.  .+
T Consensus       158 yD~KRDRWnGYdps~y~~vIe~yEk~eeak~K~l~~~q~~~d-----~--~~~d~eE~~~~~dee~y~D~a~~~k~v~~~  230 (529)
T KOG2560|consen  158 YDGKRDRWNGYDPSEYKEVIERYEKLEEAKIKGLKEQQKNGD-----E--ALWDTEEGIEDLDEELYADFADMLKTVRDT  230 (529)
T ss_pred             cccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHhhccCc-----c--cccccccccchhhHHhhhhhhccccccccc
Confidence            999999999999999999999999999999 56666653211     0  01122333445588999999999998  67


Q ss_pred             CccccccccccccccchHHHhhccCCCCCccCCCcccccCCCCCCCCCCCCCCccCCCccccccchHHHHHHHHHHHHHH
Q psy4218         238 DSKQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYETVANPEDVDYAGENFVRFSGDTRKHATAQLFAWEAY  317 (520)
Q Consensus       238 d~k~r~tvrnLRIREDtAKYL~NLd~nSA~YDPKTRsMRdnP~~~~~~~~~~~faGdnF~R~SGda~e~~~lQ~FAWeA~  317 (520)
                      +++++||||||||||||||||+|||+|||||||||||||+||+++ .+|.+..|.|+||||+||++.+|++||+|||+|+
T Consensus       231 d~~s~iTvrnLRiRED~AkYL~nld~Nsa~YDPKSRsMReep~~~-~~~~e~~~~gdnfvr~SGe~~~~~qlq~FAweA~  309 (529)
T KOG2560|consen  231 DDGSRITVRNLRIREDTAKYLRNLDVNSAYYDPKSRSMREEPLPG-KDPNEDEYSGDNFVRNSGEALEFNQLQMFAWEAF  309 (529)
T ss_pred             CCCceeeeecceechhHHHHHHhcCCcccccCccccccccCCCCC-CChhhhhhcccceeeccchhhhHHHHHHHHHHHh
Confidence            889999999999999999999999999999999999999999998 7889999999999999999999999999999999


Q ss_pred             hCCCceeeecCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhhhhhhccceeeeccccceee-------
Q psy4218         318 EKGVDVHVLAEPTKLELLKKEYEEKKEEFKKEVSSSVIDKYGGAEHLQAPPKALLLAQTEDYVEYSRYGKVIK-------  390 (520)
Q Consensus       318 ~kG~dvhl~AnPT~~Ell~Ke~k~kke~~k~~~k~~ileKYGg~e~l~~~p~elll~qtE~yvEY~~~G~vik-------  390 (520)
                      .+|++||+||+||++|||++.|+.+++.|+.+++++||+||||.+|++.+|++|||+|||.||+|++.|+|||       
T Consensus       310 ~kG~~~H~~A~Ptk~Ell~k~~k~kke~lK~q~kq~il~kYG~~~~~d~~p~elll~qte~~iey~rkg~v~KG~e~~~~  389 (529)
T KOG2560|consen  310 DKGVDVHMQADPTKLELLYKENKVKKETLKKQTKQEILDKYGGGEHKDLPPKELLLAQTEEYIEYSRKGKVIKGQEKIVP  389 (529)
T ss_pred             cccceeeeecCcHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCCccccccChHhhhccccHHHHHHhhccceecccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998       


Q ss_pred             -------cccCCCccccC-----CCcccccccch-------hhhhhhccccccCCCCCCCCCCCCCCCCCchhhhhhhHH
Q psy4218         391 -------MYIPTIIPVYG-----GPGGIMECGDT-------REAGLATSSVVGASLGPPPGIMNRPEHQDEDEEDSGHKK  451 (520)
Q Consensus       391 -------v~~nNHtsVWG-----g~WGY~CChs~-------Ge~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (520)
                             ||+||||||||     |+|||+|||||       |.+|++|.......   ....+...++.+.++.++... 
T Consensus       390 ~S~yeedV~~~nht~vwgs~w~~~rwgykcc~~f~~~syctg~~g~e~~~~~~~~---~~~~~~~~~~~~~~e~k~~~~-  465 (529)
T KOG2560|consen  390 KSKYEEDVYINNHTSVWGSFWKEGRWGYKCCHQFIKNSYCTGSAGIEAVAEELSK---ASRKEASKEPPKKVEEKEMER-  465 (529)
T ss_pred             cccchhheeccccchhhhhhhhccchhHHHHHHHHhhhcccCccchhHHhHHHhh---hhhhhccCCChhhhHHhhhhc-
Confidence                   99999999999     99999999999       99999996422111   011111122222222222111 


Q ss_pred             hhhhhhhhhhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCChhhhccc
Q psy4218         452 QKKNKKSKKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKRSYNSMISVKEPTMDSDRGN  517 (520)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~kl~~Al~~e~~r~~~~~~~~~~derkR~YNs~~~~~~~teeeM~~~  517 (520)
                            ++.....+.+++++.|-.+++.++.          .|||||+|||||++ +||+||||||
T Consensus       466 ------~~~~~~~~~~~~~~~~~ss~~~~e~----------~d~rkr~yn~~y~~-~~t~~emeay  514 (529)
T KOG2560|consen  466 ------WGERKPEDLDSNEESLPSSLSKEEE----------KDERKRKYNSMYSN-APTEEEMEAY  514 (529)
T ss_pred             ------ccccchhhhccccccccccccchhh----------hhhhcccccccccC-CCCHHHHHHH
Confidence                  1111223334555556666666552          69999999999999 9999999998

>PF11708 Slu7: Pre-mRNA splicing Prp18-interacting factor; InterPro: IPR021715 The spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and U5) and proteins, catalyses the excision of introns from pre-mRNAs in two successive trans-esterification reactions	Back alignment and domain information

>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		520
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 58.7 bits (141), Expect = 4e-09
 Identities = 73/415 (17%), Positives = 124/415 (29%), Gaps = 115/415 (27%)

Query: 150 DEFVQPKLIQD-YDSKRDRWAGYDPSNHKAIV---EHYQKIEEAKRELRADK-------- 197
            E  QP ++   Y  +RDR    +    K  V   + Y K+ +A  ELR  K        
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 198 ------LDAGVSIDNR------------GSKEGDEDKDDLEEDEDKYVDEVDMPGTKVDS 239
                 +   V +  +              K  +  +  LE  +           ++ D 
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 240 KQRITVRNLRIREDTAKYLRNLDPNSAYYDPKTRSMRDNPYET-------VANPEDVDYA 292
              I +R           LR L             ++  PYE        V N +  +  
Sbjct: 220 SSNIKLR----IHSIQAELRRL-------------LKSKPYENCLLVLLNVQNAKAWNA- 261

Query: 293 GENFVRFSGD------TR-KHATAQLFAWEAYEKGVDVH--VLAEPTKLELLKKEYEEKK 343
                 F+        TR K  T  L A       +D H   L       LL K  + + 
Sbjct: 262 ------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 344 EEFKKEVSS------SVIDKYGGAEHLQAPPKALLLAQTEDYVEYSRYGKVIKMYIPTII 397
           ++  +EV +      S+I     AE ++             +V   +   +I+  +  + 
Sbjct: 316 QDLPREVLTTNPRRLSII-----AESIRDGLATW---DNWKHVNCDKLTTIIESSLNVLE 367

Query: 398 PVYGGPGGIMECGDTREA--GLATSSVVGASLGPPPGIMNRPEH------QDEDEEDSGH 449
           P            + R+    L+   V       PP   + P         D  + D   
Sbjct: 368 P-----------AEYRKMFDRLS---VF------PPSA-HIPTILLSLIWFDVIKSDVMV 406

Query: 450 KKQKKNKKS--KKKKKEKEKSAEEKMKEALKKEEEEQREADRLLRMDERKRSYNS 502
              K +K S  +K+ KE   S      E   K E E      ++      ++++S
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		520
1nc8_A		29	Nucleocapsid protein; HIV-2, RNA recognition, zinc	94.44
1u6p_A		56	GAG polyprotein; MLV, A-minor K-turn, stem loop, b	89.55
1dsq_A		26	Nucleic acid binding protein P14; CCHC type zinc f	89.01
1a6b_B		40	Momulv, zinc finger protein NCP10; nucleocapsid pr	82.93
1cl4_A		60	Protein (GAG polyprotein); nucleocapsid protein, R	81.95
2ec7_A		49	GAG polyprotein (PR55GAG); nucleocapsid protein, H	81.58
1a1t_A		55	Nucleocapsid protein; stem-loop RNA, viral protein	81.3

>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A	Back alignment and structure

Probab=94.44  E-value=0.017  Score=39.09  Aligned_cols=24  Identities=33%  Similarity=0.646  Sum_probs=20.1

Q ss_pred             cccccccccCCCCccccccCccccc
Q psy4218         115 KGACENCGAMTHKKKDCLERPRKVL  139 (520)
Q Consensus       115 KGACeNCGAmtHkkKDClERPRK~G  139 (520)
                      ...|-|||..+|-.+||-. |||+|
T Consensus         6 ~~~C~nCgk~GH~ar~C~~-prkkg   29 (29)
T 1nc8_A            6 VIRCWNCGKEGHSARQCRA-PRRQG   29 (29)
T ss_dssp             CCBCTTTSCBSSCGGGCCS-SSSCC
T ss_pred             CCEEEECCccccCHhHCcc-cccCC
Confidence            3569999999999999975 67765

PyMOL of 1nc8

>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A	Back alignment and structure

>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1	Back alignment and structure

>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A	Back alignment and structure

>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1	Back alignment and structure

>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		520
d1nc8a_		29	HIV nucleocapsid {Human immunodeficiency virus typ	95.64
d1dsqa_		26	Nucleic acid binding protein p14 {Mouse mammary tu	88.64
d2exfa1		42	HIV nucleocapsid {Human immunodeficiency virus typ	84.16

>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}	Back information, alignment and structure

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: HIV nucleocapsid
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=95.64  E-value=0.0018  Score=42.73  Aligned_cols=22  Identities=36%  Similarity=0.789  Sum_probs=19.4

Q ss_pred             cccccccCCCCccccccCccccc
Q psy4218         117 ACENCGAMTHKKKDCLERPRKVL  139 (520)
Q Consensus       117 ACeNCGAmtHkkKDClERPRK~G  139 (520)
                      -|-|||.++|..+.|- -|||+|
T Consensus         8 kCfNCGkeGH~ar~Cr-APRkkg   29 (29)
T d1nc8a_           8 RCWNCGKEGHSARQCR-APRRQG   29 (29)
T ss_dssp             BCTTTSCBSSCGGGCC-SSSSCC
T ss_pred             EeecCCccchhhhhcc-CcccCC
Confidence            4999999999999996 488876

PyMOL of d1nc8a_

>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}	Back information, alignment and structure

>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}	Back information, alignment and structure