Psyllid ID: psy4391

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MNLSNAPSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLPK
Secondary Structure (PSIPRED)
cccccccccccccccccEEEcccccccccEEEEEEcccccEEEEEcccccEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEcccccccEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccccEEEEEEcccccEEEEcccccEEEEEEccccccc
Coil and Loop (DISEMBL)
mnlsnapssssnpkpnyvLKFTLAGHTkavssvkfspngewlassSADKLIKIWGAydgkfektisghklgisdvawssdsrllvsgsddktlkiwelssgkclktlkghsnyvfccnfnpqsnlivsgsfdesvriwdvrtgkclktlpahsdpvsavhfnrdgslivsssydglcriwdtaSGQCLktlidddnppvsfvkfspngKYILAATLDNTLklwdsypclpk
Flexible Loop (DISEMBL)
mnlsnapssssnpkpNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLlvsgsddktlkIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKtlpahsdpvsavHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLPK
Low Complexity Region (SEG)
MNLsnapssssnpkpnYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLPK
Disordered region (IsUnstruct)
****************YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC***
Disordered Region (DISOPRED)
MNLSN***********YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLP*
Disordered Region (DISEMBL)
************PKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLPK
Disordered Region (DISPRO)
*NLSNAPSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLSNAPSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLPK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
Q5M786	334	WD repeat-containing prot	yes	N/A	0.943	0.652	0.937	1e-118
Q2KIG2	334	WD repeat-containing prot	yes	N/A	0.956	0.661	0.941	1e-117
Q9V3J8	361	Protein will die slowly O	yes	N/A	0.887	0.567	0.976	1e-117
Q498M4	334	WD repeat-containing prot	yes	N/A	0.956	0.661	0.941	1e-117
P61965	334	WD repeat-containing prot	yes	N/A	0.956	0.661	0.941	1e-117
P61964	334	WD repeat-containing prot	yes	N/A	0.956	0.661	0.941	1e-117
Q86VZ2	330	WD repeat-containing prot	no	N/A	0.956	0.669	0.824	1e-103
Q5RE95	330	WD repeat-containing prot	yes	N/A	0.956	0.669	0.819	1e-103
Q9D7H2	328	WD repeat-containing prot	no	N/A	0.969	0.682	0.768	4e-98
Q4V8C4	328	WD repeat-containing prot	no	N/A	0.952	0.670	0.778	9e-98

>sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1

 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/224 (93%), Positives = 214/224 (95%), Gaps = 6/224 (2%)

Query: 7   PSSSSNP------KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 60
           PSSS+N       KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK
Sbjct: 19  PSSSNNQSKPAPVKPNYTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 78

Query: 61  FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFN 120
           FEKTISGHKLGISDVAWSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFN
Sbjct: 79  FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138

Query: 121 PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
           PQSNLIVSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

Query: 181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.
Xenopus tropicalis (taxid: 8364)

>sp|Q2KIG2|WDR5_BOVIN WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/222 (94%), Positives = 213/222 (95%), Gaps = 1/222 (0%)

Query: 4   SNAPSSSSNP-KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 62
           S+A  S   P KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE
Sbjct: 21  SSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           KTISGHKLGISDVAWSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQ
Sbjct: 81  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
           SNLIVSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200

Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Bos taurus (taxid: 9913)

>sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1

 Score =  421 bits (1082), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/211 (97%), Positives = 209/211 (99%)

Query: 14  KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 73
           KPNY LKFTLAGHTKAVS+VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS
Sbjct: 59  KPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 118

Query: 74  DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 133
           DVAWSSDSRLLVSGSDDKTLK+WELS+GK LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE
Sbjct: 119 DVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 178

Query: 134 SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 193
           SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID
Sbjct: 179 SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 238

Query: 194 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           DDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 239 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD 269

Essential for viability.

Drosophila melanogaster (taxid: 7227)

>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1

 Score =  421 bits (1082), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/222 (94%), Positives = 213/222 (95%), Gaps = 1/222 (0%)

Query: 4   SNAPSSSSNP-KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 62
           S+A  S   P KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE
Sbjct: 21  SSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           KTISGHKLGISDVAWSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQ
Sbjct: 81  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
           SNLIVSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200

Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Rattus norvegicus (taxid: 10116)

>sp|P61965|WDR5_MOUSE WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=1 SV=1

 Score =  421 bits (1082), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/222 (94%), Positives = 213/222 (95%), Gaps = 1/222 (0%)

Query: 4   SNAPSSSSNP-KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 62
           S+A  S   P KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE
Sbjct: 21  SSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           KTISGHKLGISDVAWSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQ
Sbjct: 81  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
           SNLIVSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200

Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Mus musculus (taxid: 10090)

>sp|P61964|WDR5_HUMAN WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1

 Score =  421 bits (1082), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/222 (94%), Positives = 213/222 (95%), Gaps = 1/222 (0%)

Query: 4   SNAPSSSSNP-KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 62
           S+A  S   P KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE
Sbjct: 21  SSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 80

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           KTISGHKLGISDVAWSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQ
Sbjct: 81  KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
           SNLIVSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200

Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 201 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Contributes to histone modification. May position the N-terminus of histone H3 for efficient trimethylation at 'Lys-4'. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. May regulate osteoblasts differentiation.

Homo sapiens (taxid: 9606)

>sp|Q86VZ2|WDR5B_HUMAN WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1

 Score =  374 bits (960), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/222 (82%), Positives = 198/222 (89%), Gaps = 1/222 (0%)

Query: 4   SNAPSSSSNPK-PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 62
           S+A  S   P+ PNY LK TL GHT+AVSSVKFSPNGEWLASSSAD+LI IWGAYDGK+E
Sbjct: 17  SSANQSKEVPENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYE 76

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           KT+ GH L ISDVAWSSDS  LVS SDDKTLK+W++ SGKCLKTLKGHSNYVFCCNFNP 
Sbjct: 77  KTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPP 136

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
           SNLI+SGSFDE+V+IW+V+TGKCLKTL AHSDPVSAVHFN  GSLIVS SYDGLCRIWD 
Sbjct: 137 SNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDA 196

Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ASGQCLKTL+DDDNPPVSFVKFSPNGKYIL ATLDNTLKLWD
Sbjct: 197 ASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWD 238

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5RE95|WDR5B_PONAB WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1

 Score =  374 bits (960), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/222 (81%), Positives = 198/222 (89%), Gaps = 1/222 (0%)

Query: 4   SNAPSSSSNPK-PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 62
           S+A  S   P+ PNY LK TL GHT+AVSSVKFSPNGEWLASSSAD+LI IWGAYDGK+E
Sbjct: 17  SSANQSKEVPENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYE 76

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           +T+ GH L ISDVAWSSDS  LVS SDDKTLK+W++ SGKCLKTLKGHSNYVFCCNFNP 
Sbjct: 77  RTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDMRSGKCLKTLKGHSNYVFCCNFNPP 136

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 182
           SNLI+SGSFDE+V+IW+V+TGKCLKTL AHSDPVSAVHFN  GSLIVS SYDGLCRIWD 
Sbjct: 137 SNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDA 196

Query: 183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ASGQCLKTL+DDDNPPVSFVKFSPNGKYIL ATLDNTLKLWD
Sbjct: 197 ASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWD 238

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q9D7H2|WDR5B_MOUSE WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1

 Score =  357 bits (916), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 173/225 (76%), Positives = 195/225 (86%), Gaps = 1/225 (0%)

Query: 1   MNLSNAPSSSSNP-KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 59
            +L +AP     P KPNY L+ TLAGH+ A+SSVKFSPNGEWLASS+AD LI IWGAYDG
Sbjct: 12  QSLLSAPRREEEPQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDG 71

Query: 60  KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNF 119
             +KT+ GH L ISDVAWSSDS  LVS SDDKTLK+W++ SGKCLKTLKGHS++VFCC+F
Sbjct: 72  NCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDF 131

Query: 120 NPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 179
           NP SNLIVSGSFDESV+IW+V+TGKCLKTL AHSDP+SAV+FN +GSLIVS SYDGLCRI
Sbjct: 132 NPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRI 191

Query: 180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           WD ASGQCL+TL D+ NPPVSFVKFSPNGKYIL ATLDNTLKLWD
Sbjct: 192 WDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWD 236

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Mus musculus (taxid: 10090)

>sp|Q4V8C4|WDR5B_RAT WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1

 Score =  356 bits (913), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 172/221 (77%), Positives = 194/221 (87%), Gaps = 1/221 (0%)

Query: 5   NAPSSSSNP-KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 63
           +AP     P KPNY L+ TLAGH+ A+SSVKFSPNGEWLASS+AD LI IWGAYDGK +K
Sbjct: 16  SAPQRVEEPQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKK 75

Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS 123
           T+ GH L ISDVAWSSDS  LVS SDDKTLK+W++ SGKCLKTLKGHS++VFCC+FNP S
Sbjct: 76  TLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSDFVFCCDFNPPS 135

Query: 124 NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 183
           NLIVSGSFDESV+IW+V+TGKCLKTL AHSDP+SAVHF+ +GSLIVS SYDGLCRIWD A
Sbjct: 136 NLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNGSLIVSGSYDGLCRIWDAA 195

Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           SGQCL+TL D+ NPPVSFVKFSPNGKYIL ATLD+TLKLWD
Sbjct: 196 SGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDSTLKLWD 236

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
91077142	343	PREDICTED: similar to will die slowly [T	0.909	0.612	0.986	1e-118
289743251	351	WD40 repeat-containing protein [Glossina	0.952	0.626	0.955	1e-118
383865387	334	PREDICTED: protein will die slowly-like	0.965	0.667	0.938	1e-117
380023873	334	PREDICTED: protein will die slowly-like	0.965	0.667	0.938	1e-117
340711616	334	PREDICTED: protein will die slowly-like	0.965	0.667	0.938	1e-117
350405917	334	PREDICTED: WD repeat-containing protein	0.909	0.628	0.972	1e-117
442761707	341	Putative u4/u6 small nuclear ribonucleop	0.926	0.627	0.954	1e-117
427793047	327	Putative will die slowly, partial [Rhipi	0.917	0.648	0.954	1e-117
328793719	334	PREDICTED: WD repeat-containing protein	0.965	0.667	0.938	1e-117
307207347	334	Protein will die slowly [Harpegnathos sa	0.948	0.655	0.950	1e-117

>gi|91077142|ref|XP_971564.1| PREDICTED: similar to will die slowly [Tribolium castaneum] gi|270002042|gb|EEZ98489.1| hypothetical protein TcasGA2_TC000986 [Tribolium castaneum]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/216 (98%), Positives = 213/216 (98%)

Query: 9   SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 68
           SSSN KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH
Sbjct: 36  SSSNLKPNYTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 95

Query: 69  KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 128
           KLGISDVAWSSDSRLLVS SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS
Sbjct: 96  KLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 155

Query: 129 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 188
           GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL
Sbjct: 156 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 215

Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 216 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 251

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289743251|gb|ADD20373.1| WD40 repeat-containing protein [Glossina morsitans morsitans]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/223 (95%), Positives = 217/223 (97%), Gaps = 3/223 (1%)

Query: 5   NAPSS---SSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 61
           NAP+S   S + KPNY LKFTLAGHTKAVS+VKFSPNGEWLASSSADKLIKIWGAYDGKF
Sbjct: 37  NAPTSNKSSMSVKPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKF 96

Query: 62  EKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP 121
           EKTISGHKLGISDVAWSSDSRLLVSGSDDKTLK+WELSSGKCLKTLKGHSNYVFCCNFNP
Sbjct: 97  EKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSSGKCLKTLKGHSNYVFCCNFNP 156

Query: 122 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD
Sbjct: 157 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 216

Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 217 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 259

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865387|ref|XP_003708155.1| PREDICTED: protein will die slowly-like [Megachile rotundata]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/227 (93%), Positives = 218/227 (96%), Gaps = 4/227 (1%)

Query: 2   NLSNAPS----SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 57
           N ++AP+    SSS  KPNY LK+TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG+Y
Sbjct: 16  NTASAPATGTKSSSTLKPNYTLKYTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGSY 75

Query: 58  DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC 117
           DGKFEKTISGHKLGISDVAWSSDSRLLVS SDDKTLKIWELSSGKCLKTLKGHSNYVFCC
Sbjct: 76  DGKFEKTISGHKLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCC 135

Query: 118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177
           NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195

Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023873|ref|XP_003695734.1| PREDICTED: protein will die slowly-like [Apis florea]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/227 (93%), Positives = 217/227 (95%), Gaps = 4/227 (1%)

Query: 2   NLSNAPS----SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 57
           N + AP+    SSS  KPNY LK+TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG+Y
Sbjct: 16  NTATAPTTGTKSSSTLKPNYTLKYTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGSY 75

Query: 58  DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC 117
           DGKFEKTISGHKLGISDVAWSSDSRLLVS SDDKTLKIWELSSGKCLKTLKGHSNYVFCC
Sbjct: 76  DGKFEKTISGHKLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCC 135

Query: 118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177
           NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195

Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711616|ref|XP_003394370.1| PREDICTED: protein will die slowly-like [Bombus terrestris]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/227 (93%), Positives = 217/227 (95%), Gaps = 4/227 (1%)

Query: 2   NLSNAPSS----SSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 57
           N + AP+S    SS  KPNY LK+TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG+Y
Sbjct: 16  NTATAPASGTKSSSTLKPNYTLKYTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGSY 75

Query: 58  DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC 117
           DGKFEKTISGHKLGISDVAWSSDSRLLVS SDDKTLKIWELSSGKCLKTLKGHSNYVFCC
Sbjct: 76  DGKFEKTISGHKLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCC 135

Query: 118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177
           NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195

Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405917|ref|XP_003487593.1| PREDICTED: WD repeat-containing protein 5-like [Bombus impatiens]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/216 (97%), Positives = 212/216 (98%)

Query: 9   SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 68
           SSS  KPNY LK+TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG+YDGKFEKTISGH
Sbjct: 27  SSSTLKPNYTLKYTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGSYDGKFEKTISGH 86

Query: 69  KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 128
           KLGISDVAWSSDSRLLVS SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS
Sbjct: 87  KLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146

Query: 129 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 188
           GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL
Sbjct: 147 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 206

Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 207 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442761707|gb|JAA73012.1| Putative u4/u6 small nuclear ribonucleoprotein prp4, partial [Ixodes ricinus]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/218 (95%), Positives = 214/218 (98%)

Query: 7   PSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 66
           PS+++  KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS
Sbjct: 32  PSAAAKLKPNYSLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 91

Query: 67  GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI 126
           GHKLGISDVAWS+DSRLLVS SDDKTLKIWE+SSGKCLKTLKGHSNYVFCCNFNPQSNLI
Sbjct: 92  GHKLGISDVAWSTDSRLLVSASDDKTLKIWEVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 151

Query: 127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 186
           VSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ
Sbjct: 152 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 211

Query: 187 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 212 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 249

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427793047|gb|JAA61975.1| Putative will die slowly, partial [Rhipicephalus pulchellus]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/218 (95%), Positives = 214/218 (98%)

Query: 7   PSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 66
           PS+++  KPNY LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS
Sbjct: 18  PSAAAKLKPNYSLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 77

Query: 67  GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI 126
           GHKLGISDVAWS+DSRLLVS SDDKTLKIWE+SSGKCLKTLKGHSNYVFCCNFNPQSNLI
Sbjct: 78  GHKLGISDVAWSTDSRLLVSASDDKTLKIWEVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 137

Query: 127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 186
           VSGSFDESVRIWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ
Sbjct: 138 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 197

Query: 187 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 198 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 235

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793719|ref|XP_003251918.1| PREDICTED: WD repeat-containing protein 5 [Apis mellifera]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/227 (93%), Positives = 216/227 (95%), Gaps = 4/227 (1%)

Query: 2   NLSNAPS----SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 57
           N + APS    SSS  KPNY LK+TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG+Y
Sbjct: 16  NTATAPSTGTKSSSTLKPNYTLKYTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGSY 75

Query: 58  DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC 117
           DGKFEKTISGHKLGISDVAWSSDSRLLVS SDDKTLKIWELSSGKCLKTLKGHSNYVFCC
Sbjct: 76  DGKFEKTISGHKLGISDVAWSSDSRLLVSASDDKTLKIWELSSGKCLKTLKGHSNYVFCC 135

Query: 118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177
           NFNPQSNLIVSGS DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC
Sbjct: 136 NFNPQSNLIVSGSXDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195

Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207347|gb|EFN85097.1| Protein will die slowly [Harpegnathos saltator]

 Score =  425 bits (1093), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/221 (95%), Positives = 215/221 (97%), Gaps = 2/221 (0%)

Query: 6   APSSSSNP--KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 63
           A S+ SN   +PNY LK+TLAGHTKAVSSVKFSPNGEWLASS+ADKLIKIWG+YDGKFEK
Sbjct: 22  ASSTKSNTIVRPNYTLKYTLAGHTKAVSSVKFSPNGEWLASSAADKLIKIWGSYDGKFEK 81

Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS 123
           TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS
Sbjct: 82  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS 141

Query: 124 NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 183
           NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA
Sbjct: 142 NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201

Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 202 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.900	0.576	0.975	4.8e-110
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.900	0.622	0.971	1e-109
UNIPROTKB|P61964	334	WDR5 "WD repeat-containing pro	0.900	0.622	0.971	1e-109
UNIPROTKB|F1S034	334	WDR5 "Uncharacterized protein"	0.900	0.622	0.971	1e-109
MGI|MGI:2155884	334	Wdr5 "WD repeat domain 5" [Mus	0.900	0.622	0.971	1e-109
RGD|1305159	334	Wdr5 "WD repeat domain 5" [Rat	0.900	0.622	0.971	1e-109
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.900	0.675	0.971	1e-109
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.900	0.622	0.971	1e-109
MGI|MGI:1916794	328	Wdr5b "WD repeat domain 5B" [M	0.900	0.634	0.798	3.5e-91
WB|WBGene00006474	376	wdr-5.1 [Caenorhabditis elegan	0.900	0.553	0.730	4.4e-84

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
 Identities = 203/208 (97%), Positives = 206/208 (99%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVS+VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    62 YTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 121

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDSRLLVSGSDDKTLK+WELS+GK LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:   122 WSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 181

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   182 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 241

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   242 PPVSFVKFSPNGKYILAATLDNTLKLWD 269

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

UNIPROTKB|F1S034 WDR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

MGI|MGI:2155884 Wdr5 "WD repeat domain 5" [Mus musculus (taxid:10090)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0001501 "skeletal system development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1305159 Wdr5 "WD repeat domain 5" [Rattus norvegicus (taxid:10116)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

GO:0000123 "histone acetyltransferase complex" evidence=ISO;ISS

GO:0001501 "skeletal system development" evidence=IEA;ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISO;ISS

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA;ISO

GO:0043966 "histone H3 acetylation" evidence=IEA;ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO;ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISO;ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISO;ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISO;ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISO;ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISO;ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISO;ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISO;ISS

GO:0071339 "MLL1 complex" evidence=ISO;ISS

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:     9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 68

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 128

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   189 PPVSFVKFSPNGKYILAATLDNTLKLWD 216

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 202/208 (97%), Positives = 205/208 (98%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct:    35 YTLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct:    95 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct:   155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct:   215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

MGI|MGI:1916794 Wdr5b "WD repeat domain 5B" [Mus musculus (taxid:10090)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 166/208 (79%), Positives = 186/208 (89%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y L+ TLAGH+ A+SSVKFSPNGEWLASS+AD LI IWGAYDG  +KT+ GH L ISDVA
Sbjct:    29 YALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVA 88

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDS  LVS SDDKTLK+W++ SGKCLKTLKGHS++VFCC+FNP SNLIVSGSFDESV+
Sbjct:    89 WSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVK 148

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IW+V+TGKCLKTL AHSDP+SAV+FN +GSLIVS SYDGLCRIWD ASGQCL+TL D+ N
Sbjct:   149 IWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGN 208

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPVSFVKFSPNGKYIL ATLDNTLKLWD
Sbjct:   209 PPVSFVKFSPNGKYILTATLDNTLKLWD 236

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

WB|WBGene00006474 wdr-5.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 152/208 (73%), Positives = 181/208 (87%)

Query:    17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
             Y L  TL GHTK++SS KFSP G++L +SSADK +KIW       E+T++GHKLG++D+A
Sbjct:    77 YKLMCTLEGHTKSISSAKFSPCGKYLGTSSADKTVKIWNMDHMICERTLTGHKLGVNDIA 136

Query:    77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
             WSSDSR +VS SDDKTLKI+E+ + +  KTLKGH+NYVFCCNFNPQS+L+VSGSFDESVR
Sbjct:   137 WSSDSRCVVSASDDKTLKIFEIVTSRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVR 196

Query:   137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
             IWDV+TG C+KTLPAHSDPVSAV FNRDGSLI S SYDGL RIWDTA+GQC+KTL+DD+N
Sbjct:   197 IWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVDDEN 256

Query:   197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
             PPV+FVKFSPNGKYILA+ LD+TLKLWD
Sbjct:   257 PPVAFVKFSPNGKYILASNLDSTLKLWD 284

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54KL5	WDR5_DICDI	No assigned EC number	0.7129	0.9004	0.6208	yes	N/A
Q9D7H2	WDR5B_MOUSE	No assigned EC number	0.7688	0.9696	0.6829	no	N/A
Q9V3J8	WDS_DROME	No assigned EC number	0.9763	0.8874	0.5678	yes	N/A
Q5M786	WDR5_XENTR	No assigned EC number	0.9375	0.9437	0.6526	yes	N/A
Q17963	TG125_CAEEL	No assigned EC number	0.7320	0.8787	0.5398	yes	N/A
Q86VZ2	WDR5B_HUMAN	No assigned EC number	0.8243	0.9567	0.6696	no	N/A
Q4V8C4	WDR5B_RAT	No assigned EC number	0.7782	0.9523	0.6707	no	N/A
Q498M4	WDR5_RAT	No assigned EC number	0.9414	0.9567	0.6616	yes	N/A
P61964	WDR5_HUMAN	No assigned EC number	0.9414	0.9567	0.6616	yes	N/A
P61965	WDR5_MOUSE	No assigned EC number	0.9414	0.9567	0.6616	yes	N/A
Q5RE95	WDR5B_PONAB	No assigned EC number	0.8198	0.9567	0.6696	yes	N/A
Q2KIG2	WDR5_BOVIN	No assigned EC number	0.9414	0.9567	0.6616	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	231
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-74
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-67
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-67
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-56
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-20
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-14
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-11
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-10
smart00320	40	smart00320, WD40, WD40 repeats	5e-10
smart00320	40	smart00320, WD40, WD40 repeats	1e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-09
smart00320	40	smart00320, WD40, WD40 repeats	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-08
smart00320	40	smart00320, WD40, WD40 repeats	7e-08
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-07
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	6e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  227 bits (580), Expect = 1e-74
 Identities = 91/206 (44%), Positives = 139/206 (67%), Gaps = 1/206 (0%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
           L+ TL GHT  V+ V FSP+G+ LA+ S D  IK+W    G+  +T+ GH   + DVA S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
           +D   L SGS DKT+++W+L +G+C++TL GH++YV    F+P   ++ S S D+++++W
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
           DV TGKCL TL  H+D V++V F+ DG+ + SSS DG  ++WD  +G+C+ TL       
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-E 179

Query: 199 VSFVKFSPNGKYILAATLDNTLKLWD 224
           V+ V FSP+G+ +L+++ D T+KLWD
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWD 205

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  209 bits (534), Expect = 1e-67
 Identities = 88/207 (42%), Positives = 137/207 (66%), Gaps = 1/207 (0%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
           L  TL GHT  V  V  S +G +LAS S+DK I++W    G+  +T++GH   +S VA+S
Sbjct: 43  LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS 102

Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
            D R+L S S DKT+K+W++ +GKCL TL+GH+++V    F+P    + S S D ++++W
Sbjct: 103 PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162

Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
           D+RTGKC+ TL  H+  V++V F+ DG  ++SSS DG  ++WD ++G+CL TL   +N  
Sbjct: 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN-G 221

Query: 199 VSFVKFSPNGKYILAATLDNTLKLWDS 225
           V+ V FSP+G  + + + D T+++WD 
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDL 248

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  209 bits (534), Expect = 1e-67
 Identities = 88/203 (43%), Positives = 130/203 (64%), Gaps = 1/203 (0%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
           TL GHT  VSSV FSP+G  L+SSS DK IK+W    GK   T+ GH   ++ VA+S D 
Sbjct: 88  TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147

Query: 82  RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
             + S S D T+K+W+L +GKC+ TL GH+  V    F+P    ++S S D ++++WD+ 
Sbjct: 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207

Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
           TGKCL TL  H + V++V F+ DG L+ S S DG  R+WD  +G+C++TL    N  V+ 
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN-SVTS 266

Query: 202 VKFSPNGKYILAATLDNTLKLWD 224
           + +SP+GK + + + D T+++WD
Sbjct: 267 LAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  179 bits (456), Expect = 6e-56
 Identities = 76/167 (45%), Positives = 109/167 (65%)

Query: 15  PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 74
                  TL GHT  V+SV FSP+G ++ASSS D  IK+W    GK   T++GH   ++ 
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182

Query: 75  VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
           VA+S D   L+S S D T+K+W+LS+GKCL TL+GH N V    F+P   L+ SGS D +
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242

Query: 135 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           +R+WD+RTG+C++TL  H++ V+++ ++ DG  + S S DG  RIWD
Sbjct: 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  114 bits (285), Expect = 1e-29
 Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 9/225 (4%)

Query: 8   SSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-- 65
            S S      +    L GH  +++S+ FSP+GE L S S+D  IK+W   +G+       
Sbjct: 46  LSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLE 105

Query: 66  SGHKLGISDVAWSS---DSRLLVSGSDDKTLKIWELSS-GKCLKTLKGHSNYVFCCNFNP 121
             H   +S +A SS   +S LL S S D T+K+W+LS+ GK ++TL+GHS  V    F+P
Sbjct: 106 GLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP 165

Query: 122 QSNLIVSGS-FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRI 179
              L+ SGS  D ++++WD+RTGK L TL  H+DPVS++ F+ DG  LI S S DG  R+
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225

Query: 180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           WD ++G+ L++ +   +  V    FSP+G  + + + D T++LWD
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWD 269

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  112 bits (280), Expect = 7e-29
 Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 8/207 (3%)

Query: 26  HTKAVSSVKF-SPNGEWLAS--SSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDS 81
           H  +VS +   SP+G  +    SS D  +K+W     GK  +T+ GH   ++ +A+S D 
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167

Query: 82  RLLVSGSD-DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWD 139
           +LL SGS  D T+K+W+L +GK L TL GH++ V    F+P    LI SGS D ++R+WD
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 140 VRTGKCLK-TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
           + TGK L+ TL  HSD V +  F+ DGSL+ S S DG  R+WD  S   L   +   +  
Sbjct: 228 LSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286

Query: 199 VSFVKFSPNGKYILAATLDNTLKLWDS 225
           V  V FSP+GK + + + D T++LWD 
Sbjct: 287 VLSVAFSPDGKLLASGSSDGTVRLWDL 313

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  110 bits (276), Expect = 3e-28
 Identities = 91/224 (40%), Positives = 135/224 (60%), Gaps = 7/224 (3%)

Query: 12  NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKL 70
           +     +L+ TL+GH+ +V S  FSP+G  LAS S+D  I++W         +T+SGH  
Sbjct: 227 DLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285

Query: 71  GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC--LKTLKGHSNYVFCCNFNPQ-SNLIV 127
            +  VA+S D +LL SGS D T+++W+L +GK     TLKGH   V   +F+P  S L+ 
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345

Query: 128 SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
            GS D ++R+WD+RTGK LKTL  HS  V +V F+ DG ++ S S DG  R+WD ++G  
Sbjct: 346 GGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404

Query: 188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLPK 231
           L+ L    +  V+ + FSP+GK + + + DNT++LWD    L  
Sbjct: 405 LRNLDGHTSR-VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 94.8 bits (234), Expect = 1e-22
 Identities = 78/211 (36%), Positives = 125/211 (59%), Gaps = 17/211 (8%)

Query: 12  NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHK 69
           + + +  L  TL+GH+ +V SV FSP+G+ LAS S+D  +++W    GK     T+ GH+
Sbjct: 269 DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE 328

Query: 70  LGISDVAWSSD-SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 128
             +S +++S D S L+  GSDD T+++W+L +GK LKTL+GHSN V   +F+P   ++ S
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSS 387

Query: 129 GSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 188
           GS D +VR+WD+ TG  L+ L  H+  V+++ F+ DG  + S S D   R+WD  +    
Sbjct: 388 GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT---- 443

Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNT 219
                     +  V FSP+GK + + + D +
Sbjct: 444 ---------SLKSVSFSPDGKVLASKSSDLS 465

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 88.6 bits (218), Expect = 2e-20
 Identities = 74/232 (31%), Positives = 132/232 (56%), Gaps = 13/232 (5%)

Query: 1   MNLSNAPSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 60
           +  +++ SS +  K     +   + ++ ++ S+  S +G  L +  +D L+ +       
Sbjct: 1   LVDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPD----L 56

Query: 61  FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG-KCLKTLKGHSNY----VF 115
               + GH+  I+ +A+S D  LL+SGS D T+K+W+L +G K +K+L+G  +     + 
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 116 CCNFNPQSNLIVSGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSY 173
             + +  S L+ S S D +V++WD+ T GK ++TL  HS+ V+++ F+ DG L+ S SS 
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176

Query: 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWD 224
           DG  ++WD  +G+ L TL      PVS + FSP+G  ++A  + D T++LWD
Sbjct: 177 DGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 70.9 bits (173), Expect = 3e-14
 Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 23  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS 81
           LA  +K       S     +ASS+ + ++++W     +    +  H+  +  + +SS D 
Sbjct: 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADP 588

Query: 82  RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDV 140
            LL SGSDD ++K+W ++ G  + T+K  +N + C  F  +S   ++ GS D  V  +D+
Sbjct: 589 TLLASGSDDGSVKLWSINQGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDL 647

Query: 141 RTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD---TASG 185
           R  K  L T+  HS  VS V F  D S +VSSS D   ++WD   + SG
Sbjct: 648 RNPKLPLCTMIGHSKTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMSISG 695

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 63.4 bits (154), Expect = 1e-11
 Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 9/128 (7%)

Query: 67  GHKLGISDVAWSS-DSRLLVSGSDDKTLKIWEL-------SSGKCLKTLKGHSNYVFCCN 118
           G +  I DVA++  D + L + S+D T+  W +       +    +  L+GH+  V   +
Sbjct: 73  GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132

Query: 119 FNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 177
           F+P + N++ S   D  V +WDV  GK ++ +  HSD ++++ +N DGSL+ ++S D   
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192

Query: 178 RIWDTASG 185
            I D   G
Sbjct: 193 NIIDPRDG 200

Length = 493

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 6/125 (4%)

Query: 23  LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
           L GHTK V  V F P+    LAS+ AD ++ +W    GK  + I  H   I+ + W+ D 
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180

Query: 82  RLLVSGSDDKTLKIWELSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDES----VR 136
            LL + S DK L I +   G  + +++ H S     C +  + +LI++    +S    + 
Sbjct: 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIM 240

Query: 137 IWDVR 141
           +WD R
Sbjct: 241 LWDTR 245

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 53.1 bits (128), Expect = 5e-10
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
           SG+ LKTLKGH+  V    F+P    + SGS D ++++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           +G+ LKTL  H+ PV++V F+ DG  + S S DG  ++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 21/39 (53%), Positives = 27/39 (69%)

Query: 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
           GK L+TLKGH+  V    F+P  NL+ SGS D +VR+WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 20/39 (51%), Positives = 28/39 (71%)

Query: 143 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           GK L+TL  H+ PV++V F+ DG+L+ S S DG  R+WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 58 DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97
           G+  KT+ GH   ++ VA+S D + L SGSDD T+K+W+
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 19/37 (51%), Positives = 24/37 (64%)

Query: 18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 54
           L  TL GHT  V+SV FSP+G  LAS S D  +++W
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 59 GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW 96
          GK  +T+ GH   ++ VA+S D  LL SGSDD T+++W
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.9 bits (112), Expect = 7e-08
 Identities = 21/36 (58%), Positives = 26/36 (72%)

Query: 19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 54
          L  TL GHT  V+SV FSP+G++LAS S D  IK+W
Sbjct: 4  LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 16/197 (8%)

Query: 23  LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS-------GH--KLGI 72
           L G    +  V F+P + + L ++S D  I  WG  +    + IS       GH  K+GI
Sbjct: 71  LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI 130

Query: 73  SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 132
                S+ + +L S   D  + +W++  GK ++ +K HS+ +    +N   +L+ + S D
Sbjct: 131 VSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD 189

Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVS--AVHFNRDGSLI---VSSSYDGLCRIWDTASGQC 187
           + + I D R G  + ++ AH+   S   +   R   +I    S S      +WDT     
Sbjct: 190 KKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249

Query: 188 LKTLIDDDNPPVSFVKF 204
             + +D D     F+ F
Sbjct: 250 PYSTVDLDQSSALFIPF 266

Length = 493

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 10/90 (11%)

Query: 65  ISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWEL----SSGKCLK----TLKGHSNYVF 115
           + GH   I D+ ++   S +L SGS+D T+++WE+     S K +K     LKGH   + 
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129

Query: 116 CCNFNPQSNLIV-SGSFDESVRIWDVRTGK 144
             ++NP +  I+ S  FD  V IWD+   K
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           SG+ LKTL     P V+ V FSP+GKY+ + + D T+KLWD
Sbjct: 1   SGELLKTLKGHTGP-VTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 107 LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTG----------KCLKTLPAHSDP 155
           LKGH++ +    FNP  S ++ SGS D ++R+W++             +C+  L  H   
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI--LKGHKKK 127

Query: 156 VSAVHFNRDGSLIV-SSSYDGLCRIWD 181
           +S + +N     I+ SS +D    IWD
Sbjct: 128 ISIIDWNPMNYYIMCSSGFDSFVNIWD 154

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           G+ L+TL     P V+ V FSP+G  + + + D T+++WD
Sbjct: 1   GKLLRTLKGHTGP-VTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
KOG0272|consensus	459		100.0
KOG0263|consensus	707		100.0
KOG0272|consensus	459		100.0
KOG0279|consensus	315		100.0
KOG0271|consensus	480		100.0
KOG0286|consensus	343		100.0
KOG0266|consensus	456		100.0
KOG0271|consensus	480		100.0
KOG0315|consensus	311		100.0
KOG0279|consensus	315		100.0
KOG0266|consensus	456		100.0
KOG0286|consensus	343		100.0
KOG0291|consensus	893		100.0
KOG0263|consensus	707		100.0
KOG0295|consensus	406		100.0
KOG0273|consensus	524		100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0284|consensus	464		100.0
KOG0285|consensus	460		100.0
KOG0645|consensus	312		100.0
KOG0284|consensus	464		100.0
KOG0265|consensus	338		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0295|consensus	406		100.0
KOG0318|consensus	603		100.0
KOG0291|consensus	893		100.0
KOG0316|consensus	307		100.0
PTZ00420	568	coronin; Provisional	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0315|consensus	311		99.98
KOG0282|consensus	503		99.98
KOG0318|consensus	603		99.97
KOG0289|consensus	506		99.97
KOG0296|consensus	399		99.97
KOG0296|consensus	399		99.97
KOG0643|consensus	327		99.97
KOG0283|consensus	712		99.97
KOG0645|consensus	312		99.97
KOG0285|consensus	460		99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0278|consensus	334		99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0276|consensus	794		99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0273|consensus	524		99.97
KOG0640|consensus	430		99.97
KOG0310|consensus	487		99.97
KOG0292|consensus	1202		99.97
KOG0319|consensus	775		99.97
KOG0276|consensus	794		99.97
KOG0643|consensus	327		99.97
KOG0265|consensus	338		99.97
KOG0281|consensus	499		99.97
KOG0316|consensus	307		99.97
KOG0275|consensus	508		99.97
KOG0305|consensus	484		99.97
KOG0306|consensus	888		99.96
KOG0973|consensus	942		99.96
KOG0277|consensus	311		99.96
KOG0292|consensus	1202		99.96
KOG0277|consensus	311		99.96
KOG1407|consensus	313		99.96
KOG0282|consensus	503		99.96
PTZ00420	568	coronin; Provisional	99.96
KOG1446|consensus	311		99.96
KOG0264|consensus	422		99.96
KOG0319|consensus	775		99.96
KOG0293|consensus	519		99.96
KOG0313|consensus	423		99.96
KOG0640|consensus	430		99.95
KOG0294|consensus	362		99.95
KOG1407|consensus	313		99.95
KOG0274|consensus	537		99.95
KOG0641|consensus	350		99.95
KOG0289|consensus	506		99.95
KOG0269|consensus	839		99.95
KOG2096|consensus	420		99.95
KOG0647|consensus	347		99.95
KOG0646|consensus	476		99.95
KOG0772|consensus	641		99.95
KOG1332|consensus	299		99.95
KOG0293|consensus	519		99.95
KOG0306|consensus	888		99.95
KOG0288|consensus	459		99.95
KOG0267|consensus	825		99.95
KOG1446|consensus	311		99.95
KOG0268|consensus	433		99.95
KOG0310|consensus	487		99.94
KOG0275|consensus	508		99.94
KOG0299|consensus	479		99.94
KOG0264|consensus	422		99.94
KOG0288|consensus	459		99.94
KOG0283|consensus	712		99.94
KOG0313|consensus	423		99.94
KOG1274|consensus	933		99.94
KOG0281|consensus	499		99.94
KOG0973|consensus	942		99.94
KOG0274|consensus	537		99.94
KOG4283|consensus	397		99.94
KOG0772|consensus	641		99.94
KOG1036|consensus	323		99.93
KOG0299|consensus	479		99.93
KOG0300|consensus	481		99.93
KOG0300|consensus	481		99.93
KOG0267|consensus	825		99.93
KOG0278|consensus	334		99.93
KOG2055|consensus	514		99.93
KOG0308|consensus	735		99.93
KOG0269|consensus	839		99.93
KOG0641|consensus	350		99.93
KOG0301|consensus	745		99.92
KOG1273|consensus	405		99.92
KOG0308|consensus	735		99.92
KOG0639|consensus	705		99.92
KOG1539|consensus	910		99.92
KOG1332|consensus	299		99.92
KOG0303|consensus	472		99.91
KOG0302|consensus	440		99.91
KOG0302|consensus	440		99.91
KOG0639|consensus	705		99.91
KOG0305|consensus	484		99.91
KOG2445|consensus	361		99.9
KOG0270|consensus	463		99.9
KOG2048|consensus	691		99.9
KOG4328|consensus	498		99.9
KOG0646|consensus	476		99.9
KOG1408|consensus	1080		99.89
KOG2048|consensus	691		99.89
KOG0301|consensus	745		99.89
KOG2106|consensus	626		99.89
KOG4283|consensus	397		99.88
KOG1274|consensus	933		99.88
KOG0771|consensus	398		99.88
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG1524|consensus	737		99.87
KOG1063|consensus	764		99.87
KOG1034|consensus	385		99.87
KOG2055|consensus	514		99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG0650|consensus	733		99.86
KOG2106|consensus	626		99.86
KOG0294|consensus	362		99.86
KOG0647|consensus	347		99.86
KOG4378|consensus	673		99.86
KOG1036|consensus	323		99.85
KOG0270|consensus	463		99.85
KOG1063|consensus	764		99.85
KOG0642|consensus	577		99.85
KOG1009|consensus	434		99.84
KOG0307|consensus	1049		99.83
KOG0321|consensus	720		99.83
KOG1445|consensus	1012		99.83
KOG2919|consensus	406		99.83
KOG1273|consensus	405		99.83
KOG0322|consensus	323		99.82
KOG1445|consensus	1012		99.82
KOG0307|consensus	1049		99.82
KOG1009|consensus	434		99.82
KOG0303|consensus	472		99.82
KOG1007|consensus	370		99.82
KOG2096|consensus	420		99.82
KOG1538|consensus	1081		99.82
KOG0321|consensus	720		99.81
PRK01742	429	tolB translocation protein TolB; Provisional	99.81
KOG4328|consensus	498		99.81
KOG1272|consensus	545		99.81
KOG1408|consensus	1080		99.81
KOG1539|consensus	910		99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG1188|consensus	376		99.8
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG4378|consensus	673		99.8
KOG1523|consensus	361		99.8
KOG0650|consensus	733		99.8
KOG1310|consensus	758		99.79
KOG2110|consensus	391		99.79
KOG0649|consensus	325		99.79
KOG0649|consensus	325		99.79
KOG2110|consensus	391		99.78
KOG0290|consensus	364		99.78
KOG0642|consensus	577		99.78
KOG2394|consensus	636		99.78
KOG1007|consensus	370		99.77
KOG2919|consensus	406		99.77
KOG3881|consensus	412		99.77
KOG0268|consensus	433		99.76
KOG0644|consensus	1113		99.76
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.76
KOG0290|consensus	364		99.75
KOG1034|consensus	385		99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.75
PRK03629	429	tolB translocation protein TolB; Provisional	99.75
KOG1523|consensus	361		99.75
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.75
PRK05137	435	tolB translocation protein TolB; Provisional	99.74
PRK04922	433	tolB translocation protein TolB; Provisional	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
PRK02889	427	tolB translocation protein TolB; Provisional	99.73
KOG1587|consensus	555		99.72
KOG1538|consensus	1081		99.72
KOG0322|consensus	323		99.72
KOG0771|consensus	398		99.72
KOG2139|consensus	445		99.71
KOG1240|consensus	1431		99.71
KOG4227|consensus	609		99.71
KOG2321|consensus	703		99.71
KOG2445|consensus	361		99.71
KOG2111|consensus	346		99.7
KOG1517|consensus	1387		99.7
KOG2394|consensus	636		99.68
KOG4497|consensus	447		99.68
KOG1524|consensus	737		99.67
KOG1517|consensus	1387		99.67
KOG1188|consensus	376		99.67
KOG1963|consensus	792		99.66
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.66
KOG1963|consensus	792		99.66
KOG1272|consensus	545		99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
PRK00178	430	tolB translocation protein TolB; Provisional	99.65
PRK05137	435	tolB translocation protein TolB; Provisional	99.64
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.64
KOG2139|consensus	445		99.63
KOG3881|consensus	412		99.62
PRK01029	428	tolB translocation protein TolB; Provisional	99.61
KOG2111|consensus	346		99.61
PRK04792	448	tolB translocation protein TolB; Provisional	99.61
KOG1310|consensus	758		99.61
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
KOG4547|consensus	541		99.59
PRK04922	433	tolB translocation protein TolB; Provisional	99.58
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
KOG0974|consensus	967		99.58
KOG4227|consensus	609		99.54
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.52
KOG0644|consensus	1113		99.51
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.5
KOG1587|consensus	555		99.49
PRK04043	419	tolB translocation protein TolB; Provisional	99.47
KOG2321|consensus	703		99.46
PRK00178	430	tolB translocation protein TolB; Provisional	99.45
KOG0974|consensus	967		99.45
PRK01029	428	tolB translocation protein TolB; Provisional	99.44
KOG2315|consensus	566		99.43
PRK04792	448	tolB translocation protein TolB; Provisional	99.43
KOG4497|consensus	447		99.41
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.41
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.4
KOG1240|consensus	1431		99.4
KOG4547|consensus	541		99.39
KOG1064|consensus	2439		99.39
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.37
KOG0280|consensus	339		99.35
COG4946	668	Uncharacterized protein related to the periplasmic	99.34
KOG1334|consensus	559		99.34
KOG4190|consensus	1034		99.34
KOG2041|consensus	1189		99.32
COG4946	668	Uncharacterized protein related to the periplasmic	99.3
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.29
KOG1354|consensus	433		99.28
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.28
KOG1275|consensus	1118		99.27
KOG1409|consensus	404		99.27
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.25
KOG1334|consensus	559		99.25
KOG0280|consensus	339		99.25
KOG3914|consensus	390		99.23
KOG1409|consensus	404		99.22
PRK04043	419	tolB translocation protein TolB; Provisional	99.21
KOG4714|consensus	319		99.21
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.19
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.18
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.18
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.15
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.15
KOG4532|consensus	344		99.14
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.12
KOG1354|consensus	433		99.1
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.08
KOG4532|consensus	344		99.04
KOG2695|consensus	425		99.04
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.03
KOG1912|consensus	1062		99.01
KOG2041|consensus	1189		99.0
KOG2315|consensus	566		99.0
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.99
KOG3914|consensus	390		98.99
KOG1064|consensus	2439		98.99
KOG4190|consensus	1034		98.97
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.97
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.93
KOG4714|consensus	319		98.93
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.91
KOG2114|consensus	933		98.91
KOG0309|consensus	1081		98.88
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.87
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.87
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.86
KOG2066|consensus	846		98.84
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.82
KOG0882|consensus	558		98.8
KOG2695|consensus	425		98.79
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.78
KOG2314|consensus	698		98.77
KOG1920|consensus	1265		98.76
KOG0309|consensus	1081		98.75
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.75
KOG1832|consensus	1516		98.74
KOG2314|consensus	698		98.73
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.72
KOG1920|consensus	1265		98.7
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.67
KOG0882|consensus	558		98.64
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.63
COG3391	381	Uncharacterized conserved protein [Function unknow	98.62
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.61
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.6
KOG1275|consensus	1118		98.58
KOG1912|consensus	1062		98.57
KOG2066|consensus	846		98.55
PRK02888	635	nitrous-oxide reductase; Validated	98.55
KOG4649|consensus	354		98.53
KOG1645|consensus	463		98.52
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.51
KOG3617|consensus	1416		98.49
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.47
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.44
PRK02888	635	nitrous-oxide reductase; Validated	98.44
KOG1645|consensus	463		98.4
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.39
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.39
KOG4640|consensus	665		98.37
KOG2114|consensus	933		98.37
PRK13616	591	lipoprotein LpqB; Provisional	98.37
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.36
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.34
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.32
KOG1008|consensus	783		98.28
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.26
KOG3621|consensus	726		98.26
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.23
PRK13616	591	lipoprotein LpqB; Provisional	98.2
KOG4649|consensus	354		98.19
COG3391	381	Uncharacterized conserved protein [Function unknow	98.17
KOG3621|consensus	726		98.15
KOG4640|consensus	665		98.12
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.01
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.01
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	98.0
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.0
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.0
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.97
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.95
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.95
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.93
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.92
KOG1832|consensus	1516		97.89
KOG1008|consensus	783		97.89
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.88
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.86
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.85
PHA02713	557	hypothetical protein; Provisional	97.85
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.85
KOG3617|consensus	1416		97.81
KOG2444|consensus	238		97.8
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.79
KOG2395|consensus	644		97.77
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.7
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.64
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.62
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.57
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.55
PHA03098	534	kelch-like protein; Provisional	97.55
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.48
KOG2079|consensus	1206		97.47
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.47
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.46
KOG4441|consensus	571		97.43
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.4
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.4
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.4
KOG2395|consensus	644		97.39
PRK10115	686	protease 2; Provisional	97.36
KOG4441|consensus	571		97.35
KOG4499|consensus	310		97.35
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.34
PHA02790	480	Kelch-like protein; Provisional	97.3
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.25
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.24
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.17
KOG2079|consensus	1206		97.16
PHA02713	557	hypothetical protein; Provisional	97.15
KOG2444|consensus	238		97.1
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.1
PRK13684	334	Ycf48-like protein; Provisional	97.08
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.04
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.02
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.01
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.97
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.97
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.89
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.76
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.73
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.68
KOG3630|consensus	1405		96.66
PHA03098	534	kelch-like protein; Provisional	96.6
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.57
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.52
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.52
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.51
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.45
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.43
PRK13684	334	Ycf48-like protein; Provisional	96.42
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.23
COG5167	776	VID27 Protein involved in vacuole import and degra	96.08
PHA02790	480	Kelch-like protein; Provisional	96.08
KOG2247|consensus	615		96.01
KOG4499|consensus	310		95.98
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.96
KOG1897|consensus	1096		95.93
KOG2280|consensus	829		95.92
COG5167	776	VID27 Protein involved in vacuole import and degra	95.88
KOG3630|consensus	1405		95.81
KOG1916|consensus	1283		95.59
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.56
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.56
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.5
KOG1900|consensus	1311		94.96
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.78
KOG4460|consensus	741		94.77
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.58
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.53
KOG2280|consensus	829		94.53
PRK10115	686	protease 2; Provisional	94.5
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.49
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.37
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.31
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	94.2
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.17
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.17
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	94.14
COG5276	370	Uncharacterized conserved protein [Function unknow	93.98
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.5
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.3
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	93.18
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.11
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.09
KOG1916|consensus	1283		93.04
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.0
COG4590	733	ABC-type uncharacterized transport system, permeas	92.8
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	92.53
KOG2377|consensus	657		92.43
PLN02153	341	epithiospecifier protein	92.29
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.17
COG5276	370	Uncharacterized conserved protein [Function unknow	91.86
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.77
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.77
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.64
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.45
PLN02153	341	epithiospecifier protein	91.43
COG4590	733	ABC-type uncharacterized transport system, permeas	91.38
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.28
KOG1983|consensus	993		91.02
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.61
KOG2377|consensus	657		90.51
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	90.38
PLN02193	470	nitrile-specifier protein	90.35
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.58
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	89.51
PF12768	281	Rax2: Cortical protein marker for cell polarity	89.14
KOG4460|consensus	741		89.08
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.04
KOG2247|consensus	615		88.92
KOG1900|consensus	1311		88.54
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	88.1
PLN02193	470	nitrile-specifier protein	87.98
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	87.38
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.3
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	87.21
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.2
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	86.85
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	86.79
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	86.44
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	85.72
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	85.52
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.27
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	85.19
COG1520	370	FOG: WD40-like repeat [Function unknown]	85.14
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	84.4
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.23
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	84.12
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	83.39
KOG3616|consensus	1636		82.74
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.43
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	82.38
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	82.28
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	82.24
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	82.05
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	80.38

>KOG0272|consensus

Probab=100.00  E-value=4.1e-42  Score=254.15  Aligned_cols=215  Identities=33%  Similarity=0.594  Sum_probs=199.6

Q ss_pred             ccceeEEeecccccceEEEEECCC--CCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCc
Q psy4391          15 PNYVLKFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKT   92 (231)
Q Consensus        15 ~~~~~~~~~~~h~~~i~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~   92 (231)
                      ++..+..++.+|+..|.++.|+|.  +..+|+|+.||++++|+.........+.+|..+|..++|+|+|++|++++-|.+
T Consensus       205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t  284 (459)
T KOG0272|consen  205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDST  284 (459)
T ss_pred             CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccc
Confidence            344677889999999999999997  558999999999999999888889999999999999999999999999999999


Q ss_pred             EEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe
Q psy4391          93 LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus        93 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      -++||+.++..+....+|...|.+++|++||.++++|+.|..=+|||+++|.++..+.+|..+|..+.|+|+|..+|+|+
T Consensus       285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs  364 (459)
T KOG0272|consen  285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS  364 (459)
T ss_pred             hhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC
Confidence            99999999988888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEeCCCCceeeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCCC
Q psy4391         173 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~s~d~~v~vwd~~~~~~  230 (231)
                      .|++++|||++..+.+..+. .+...|+.+.|+| .|.+|++++.|++++||....+.|
T Consensus       365 ~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~  422 (459)
T KOG0272|consen  365 SDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP  422 (459)
T ss_pred             CCCcEEEeeecccccceecc-cccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence            99999999999888766654 4556789999998 789999999999999999877665

>KOG0263|consensus

Probab=100.00  E-value=1.9e-40  Score=261.70  Aligned_cols=206  Identities=32%  Similarity=0.595  Sum_probs=197.6

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ...++.||.++|..+.|+|+.++|++++.|+++|+|.+.+....-...+|..+|+++.|+|-|-++|+++.|++-++|..
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            44568899999999999999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      ....+.+.+.+|.+.+.|+.|+|+.+++++|+.|.++++||..+|..++.+.+|.++|.+++|+|+|++|++|+.||.|.
T Consensus       523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~  602 (707)
T KOG0263|consen  523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIK  602 (707)
T ss_pred             ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +||+.+++.+..+..+ ...+.++.|+.+|..||+|+.|+.|++||.
T Consensus       603 iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  603 IWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             EEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            9999999988887766 778999999999999999999999999996

>KOG0272|consensus

Probab=100.00  E-value=8.6e-40  Score=241.88  Aligned_cols=203  Identities=32%  Similarity=0.620  Sum_probs=192.2

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      .+.+|...|..++|+|+|++|++++.|.+-++||+.++.......+|..+|.+++|.|||..+++|+.|..-+|||++++
T Consensus       256 ~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg  335 (459)
T KOG0272|consen  256 DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG  335 (459)
T ss_pred             hhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccC
Confidence            45689999999999999999999999999999999998887788899999999999999999999999999999999999


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcC-CCCeEEEEecCCeEEEE
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~v~  180 (231)
                      +++..+.+|...|..++|+|+|-.+|||+.|++++|||++..+.+..+.+|..-|+.++|+| .|.+|++++.|+++++|
T Consensus       336 r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiW  415 (459)
T KOG0272|consen  336 RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIW  415 (459)
T ss_pred             cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeee
Confidence            99999999999999999999999999999999999999999999999999999999999998 78899999999999999


Q ss_pred             eCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       181 d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ...+..+++.+..+ ...|.+++.+++++++++++.|+++++|.+
T Consensus       416 s~~~~~~~ksLaGH-e~kV~s~Dis~d~~~i~t~s~DRT~KLW~~  459 (459)
T KOG0272|consen  416 STRTWSPLKSLAGH-EGKVISLDISPDSQAIATSSFDRTIKLWRP  459 (459)
T ss_pred             cCCCcccchhhcCC-ccceEEEEeccCCceEEEeccCceeeeccC
Confidence            99999988887654 557889999999999999999999999963

>KOG0279|consensus

Probab=100.00  E-value=2.5e-37  Score=218.10  Aligned_cols=208  Identities=34%  Similarity=0.560  Sum_probs=184.9

Q ss_pred             ceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      ......+.||...|..+..++||++.++++.|+.+++||..+++..+.+.+|...|.+++|++|.+.|++|+.|.+|++|
T Consensus        53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw  132 (315)
T KOG0279|consen   53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW  132 (315)
T ss_pred             CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceeeeeecCC-CcceEEEEECCC--CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec
Q psy4391          97 ELSSGKCLKTLKGH-SNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus        97 d~~~~~~~~~~~~~-~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                      |............. .+.|.++.|+|.  ..+|++++.|+++++||+++-+....+.+|.+.++.+.++|||...++|+.
T Consensus       133 nt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk  212 (315)
T KOG0279|consen  133 NTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK  212 (315)
T ss_pred             eecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC
Confidence            99865444333333 789999999998  689999999999999999999888889999999999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ||.+.+||+..++.++.+  .+...|.+++|+|+..+|+.+. +..|+|||.-+
T Consensus       213 dg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~  263 (315)
T KOG0279|consen  213 DGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLES  263 (315)
T ss_pred             CceEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeecc-CCceEEEeccc
Confidence            999999999999987765  4566899999999966665554 66799999744

>KOG0271|consensus

Probab=100.00  E-value=1e-37  Score=228.72  Aligned_cols=210  Identities=34%  Similarity=0.650  Sum_probs=182.0

Q ss_pred             cceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEE
Q psy4391          16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (231)
Q Consensus        16 ~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~   95 (231)
                      -..-..++.||.+.|.++.|+|+|+.|++|+-|.++++||..+.......++|..-|.+++|+|||+.||+|+.||.|++
T Consensus       104 vtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l  183 (480)
T KOG0271|consen  104 VTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL  183 (480)
T ss_pred             cceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence            33444567899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcee-eeeecCCCcceEEEEECC-----CCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEE
Q psy4391          96 WELSSGKC-LKTLKGHSNYVFCCNFNP-----QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus        96 ~d~~~~~~-~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  169 (231)
                      ||.++++. .+.+.+|...|++++|.|     ..+++|+++.||.+++||+..++++..+.+|..+|+|+.|--+ .+++
T Consensus       184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliy  262 (480)
T KOG0271|consen  184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIY  262 (480)
T ss_pred             ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEE
Confidence            99998764 467889999999999976     5689999999999999999999999999999999999999643 4788


Q ss_pred             EEecCCeEEEEeCCCCceeeee----------------------------------------------------------
Q psy4391         170 SSSYDGLCRIWDTASGQCLKTL----------------------------------------------------------  191 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~----------------------------------------------------------  191 (231)
                      +|+.|++|++|+...|.+.+.+                                                          
T Consensus       263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg  342 (480)
T KOG0271|consen  263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG  342 (480)
T ss_pred             ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence            9999999999987654321110                                                          


Q ss_pred             --------------------ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         192 --------------------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       192 --------------------~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                                          ...+...|+.+.||||++++|+++.|..|++||..
T Consensus       343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~  397 (480)
T KOG0271|consen  343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR  397 (480)
T ss_pred             cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCC
Confidence                                01123347889999999999999999999999963

>KOG0286|consensus

Probab=100.00  E-value=6.1e-36  Score=212.42  Aligned_cols=212  Identities=26%  Similarity=0.500  Sum_probs=193.1

Q ss_pred             CCCccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCC
Q psy4391          12 NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK   91 (231)
Q Consensus        12 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g   91 (231)
                      ..+.+...+.+|++|...|.++.|++|+++|++++.||.+.|||..+...+.-+.-...-|..++|+|.|+++|+|+.|.
T Consensus        40 ~~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN  119 (343)
T KOG0286|consen   40 VGRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN  119 (343)
T ss_pred             ceeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc
Confidence            34555667788999999999999999999999999999999999998888877777777799999999999999999999


Q ss_pred             cEEEEeCCCc------eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcC-C
Q psy4391          92 TLKIWELSSG------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-D  164 (231)
Q Consensus        92 ~i~~~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~  164 (231)
                      ...||++.+.      +..+.+.+|.+.+.++.|-+ ...|+|++.|.++.+||+++++.+..+.+|.+.|.++.++| +
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~  198 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD  198 (343)
T ss_pred             eeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence            9999999864      34567889999999999987 56788999999999999999999999999999999999999 9


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ++.+++|+.|+..++||++.+.+.+.+.. +...|+++.|.|+|.-+++|+.|+..++||.
T Consensus       199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~g-hesDINsv~ffP~G~afatGSDD~tcRlyDl  258 (343)
T KOG0286|consen  199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEG-HESDINSVRFFPSGDAFATGSDDATCRLYDL  258 (343)
T ss_pred             CCeEEecccccceeeeeccCcceeEeecc-cccccceEEEccCCCeeeecCCCceeEEEee
Confidence            99999999999999999999999888765 4567999999999999999999999999995

>KOG0266|consensus

Probab=100.00  E-value=1.1e-35  Score=237.07  Aligned_cols=214  Identities=55%  Similarity=0.939  Sum_probs=194.1

Q ss_pred             CCccceeEEeeccc-ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc--EEEEEecccccEEEEEECCCCCEEEEecC
Q psy4391          13 PKPNYVLKFTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSD   89 (231)
Q Consensus        13 ~~~~~~~~~~~~~h-~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   89 (231)
                      ..+.+.++..+.+| ...|.++.|+++|+.+++++.++.+++|+....+  ....+.+|...|.+++|+|+++++++++.
T Consensus       144 ~~~~~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~  223 (456)
T KOG0266|consen  144 SSRVFSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSD  223 (456)
T ss_pred             ccccceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecC
Confidence            44555566666665 7899999999999999999999999999997666  66667889999999999999999999999


Q ss_pred             CCcEEEEeC-CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeE
Q psy4391          90 DKTLKIWEL-SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus        90 ~g~i~~~d~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  168 (231)
                      |+++++||+ ..+..++.+++|...+.+++|+|+++++++|+.|+.|++||++++++...+..|.++|++++|++++.++
T Consensus       224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l  303 (456)
T KOG0266|consen  224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLL  303 (456)
T ss_pred             CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEE
Confidence            999999999 5568889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCeEEEEeCCCCc--eeeeeecCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         169 VSSSYDGLCRIWDTASGQ--CLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~-~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ++++.|+.|++||+.++.  +...+...... ++..+.|+|+|+++++++.|+.+++||..
T Consensus       304 ~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  304 VSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             EEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence            999999999999999998  45666655555 79999999999999999999999999974

>KOG0271|consensus

Probab=100.00  E-value=3.7e-36  Score=220.63  Aligned_cols=203  Identities=36%  Similarity=0.654  Sum_probs=175.4

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEE-EEEecccccEEEEEECC-----CCCEEEEecCCCcEE
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSS-----DSRLLVSGSDDKTLK   94 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~g~i~   94 (231)
                      ++.++|..-|.|++|+|||+.||+|+.||.|++||..++... ..+.+|...|++++|.|     ..+++++++.||.++
T Consensus       151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vr  230 (480)
T KOG0271|consen  151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVR  230 (480)
T ss_pred             eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEE
Confidence            677899999999999999999999999999999998877654 56789999999999975     567889999999999


Q ss_pred             EEeCCCceeeeeec------------------------------------------------------------------
Q psy4391          95 IWELSSGKCLKTLK------------------------------------------------------------------  108 (231)
Q Consensus        95 ~~d~~~~~~~~~~~------------------------------------------------------------------  108 (231)
                      |||+..+.++..+.                                                                  
T Consensus       231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t  310 (480)
T KOG0271|consen  231 IWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT  310 (480)
T ss_pred             EEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence            99875433322221                                                                  


Q ss_pred             ------------------------------------------------------CCCcceEEEEECCCCCEEEEeecCCc
Q psy4391         109 ------------------------------------------------------GHSNYVFCCNFNPQSNLIVSGSFDES  134 (231)
Q Consensus       109 ------------------------------------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~  134 (231)
                                                                            +|...|..+.|+||++++|+++.|..
T Consensus       311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS  390 (480)
T KOG0271|consen  311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS  390 (480)
T ss_pred             cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence                                                                  13333556789999999999999999


Q ss_pred             EEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEE
Q psy4391         135 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA  214 (231)
Q Consensus       135 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  214 (231)
                      |++||.++|+.+..+.+|-++|+.++|+.|.++|++|+.|.++++||+++.+....+. .+...|..+.|+|||+.+++|
T Consensus       391 VkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~sg  469 (480)
T KOG0271|consen  391 VKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVASG  469 (480)
T ss_pred             eeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC-CCCceEEEEEecCCCceeecC
Confidence            9999999999999999999999999999999999999999999999999988766654 355678999999999999999


Q ss_pred             eCCCeEEEEe
Q psy4391         215 TLDNTLKLWD  224 (231)
Q Consensus       215 s~d~~v~vwd  224 (231)
                      +.|..+++|.
T Consensus       470 gkdkv~~lw~  479 (480)
T KOG0271|consen  470 GKDKVLRLWR  479 (480)
T ss_pred             CCceEEEeec
Confidence            9999999995

>KOG0315|consensus

Probab=100.00  E-value=2.1e-35  Score=205.53  Aligned_cols=217  Identities=23%  Similarity=0.455  Sum_probs=183.3

Q ss_pred             CCCCCCCCCCCCCccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCC
Q psy4391           2 NLSNAPSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS   81 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~   81 (231)
                      |+|+..+.+++|.      .++.+|+..|+++.|..+|+++++|++||+++|||++.....+.+. +..+|..+..+|+.
T Consensus        64 RlyD~~S~np~Pv------~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ  136 (311)
T KOG0315|consen   64 RLYDLNSNNPNPV------ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ  136 (311)
T ss_pred             EEEEccCCCCCce------eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc
Confidence            5566666655554      4455899999999999999999999999999999998865555554 45899999999999


Q ss_pred             CEEEEecCCCcEEEEeCCCceeeeeec-CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc------eeeeccCCCC
Q psy4391          82 RLLVSGSDDKTLKIWELSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK------CLKTLPAHSD  154 (231)
Q Consensus        82 ~~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~------~~~~~~~~~~  154 (231)
                      ..|+++..+|.|++||+....+.+.+- .....+.++...|+|..++.+...|.+++|++-..+      ++.++++|.+
T Consensus       137 teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~  216 (311)
T KOG0315|consen  137 TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG  216 (311)
T ss_pred             ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence            999999999999999998876555543 344678899999999999999999999999987654      3556788999


Q ss_pred             CeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       155 ~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .+....++||+++||+++.|.+++||+.++.-.+......+...+...+||.||+||++++.|+.+++||.
T Consensus       217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~  287 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL  287 (311)
T ss_pred             eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence            99999999999999999999999999998873333334455667889999999999999999999999996

>KOG0279|consensus

Probab=100.00  E-value=2.5e-34  Score=202.97  Aligned_cols=210  Identities=31%  Similarity=0.488  Sum_probs=185.6

Q ss_pred             ceeEEeecccccceEEEEECCC-CCEEEEEeCCCcEEEeecC-----CCcEEEEEecccccEEEEEECCCCCEEEEecCC
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAY-----DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD   90 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   90 (231)
                      ..+..++.+|++.|+.++..+. .+.++++++|..+.+|++.     .+..++.+.+|...|.++..++||++.++++.|
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD   84 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD   84 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence            4577889999999999999987 4578899999999999864     356688899999999999999999999999999


Q ss_pred             CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC-CCCeEEEEEcCC--CCe
Q psy4391          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-SDPVSAVHFNRD--GSL  167 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~--~~~  167 (231)
                      +.+++||+.+++..+.+.+|...|.+++++++.+.+++|+.|.+|++|+.-.+..+...... .+.|+++.|+|+  ..+
T Consensus        85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI  164 (315)
T ss_pred             ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence            99999999999999999999999999999999999999999999999999755444333333 789999999998  679


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +++++.|+++++||+++.+....+. .+...++.+++||||...++|+.||.+.+||...
T Consensus       165 Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~  223 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE  223 (315)
T ss_pred             EEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccC
Confidence            9999999999999999887666554 4566789999999999999999999999999743

>KOG0266|consensus

Probab=100.00  E-value=7.2e-34  Score=226.62  Aligned_cols=209  Identities=41%  Similarity=0.761  Sum_probs=186.9

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeec-CCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      +...+.+|...|..++|+|+++++++++.|+++++||. ..+...+.+.+|...|.+++|+|+++.+++|+.|++|++||
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd  274 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD  274 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence            44555789999999999999999999999999999999 45578899999999999999999999999999999999999


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc--eeeeccCCCC--CeEEEEEcCCCCeEEEEec
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK--CLKTLPAHSD--PVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~  173 (231)
                      ++++++...+.+|.+.+.+++|++++++|++++.|+.|++||+.++.  +...+..+..  +++.++|+|++.++++++.
T Consensus       275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~  354 (456)
T KOG0266|consen  275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL  354 (456)
T ss_pred             ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence            99999999999999999999999999999999999999999999998  4566655544  4899999999999999999


Q ss_pred             CCeEEEEeCCCCceeeeeecCCCC--CeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         174 DGLCRIWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      |+.+++||+..++.......+...  .+.....++.|+++++|+.|+.|.+||..+
T Consensus       355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  355 DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence            999999999998887777655543  344455688999999999999999999754

>KOG0286|consensus

Probab=100.00  E-value=2.1e-33  Score=199.58  Aligned_cols=209  Identities=28%  Similarity=0.539  Sum_probs=189.4

Q ss_pred             CccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECC-CCCEEEEecCCCc
Q psy4391          14 KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKT   92 (231)
Q Consensus        14 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~   92 (231)
                      +....++..+.+|++-+.++.|..|+ .|++++-|.+.-+||+++++....+.+|.+.|.++.++| +++.+++|+.|+.
T Consensus       132 ~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~  210 (343)
T KOG0286|consen  132 EGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKS  210 (343)
T ss_pred             cccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccc
Confidence            33445677789999999999998854 567788899999999999999999999999999999999 9999999999999


Q ss_pred             EEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC--CCCeEEEEEcCCCCeEEE
Q psy4391          93 LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH--SDPVSAVHFNRDGSLIVS  170 (231)
Q Consensus        93 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~  170 (231)
                      .++||++.+.+++.+.+|.+.|.++.|.|+|.-+++|+.|++.++||++..+.+..+...  ..+|++++|+..|++|++
T Consensus       211 aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa  290 (343)
T KOG0286|consen  211 AKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA  290 (343)
T ss_pred             eeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe
Confidence            999999999999999999999999999999999999999999999999998877766532  357899999999999999


Q ss_pred             EecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         171 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      |..|..+.+||.-.++....+. .+...|+++..+|||--|++|+.|..++||.
T Consensus       291 gy~d~~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  291 GYDDFTCNVWDTLKGERVGVLA-GHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eecCCceeEeeccccceEEEee-ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999999998888777665 4556899999999999999999999999994

>KOG0291|consensus

Probab=100.00  E-value=1.1e-33  Score=222.87  Aligned_cols=204  Identities=31%  Similarity=0.595  Sum_probs=182.0

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      ..++|-..+++++++|||+++|+|+.||.|+|||...+-+...+..|..+|+.+.|+..++.+++.+.||+|+.||+...
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY  424 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY  424 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eeeeeecCCC-cceEEEEECCCCCEEEEeecCC-cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEE
Q psy4391         102 KCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFDE-SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (231)
Q Consensus       102 ~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  179 (231)
                      +..+++.... -+..+++.+|.|.++..|+.|. .|.+|++++|+.+..+.+|++||.+++|+|++..|+++++|.+|++
T Consensus       425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi  504 (893)
T KOG0291|consen  425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI  504 (893)
T ss_pred             ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence            8888887543 3566888999999999888775 5999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCc-eeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         180 WDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       180 ~d~~~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ||+.... .+..+.  ....+..++|+|+|+-|++++.||.|.+||...
T Consensus       505 W~if~s~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~  551 (893)
T KOG0291|consen  505 WDIFSSSGTVETLE--IRSDVLAVSFRPDGKELAVATLDGQITFFDIKE  551 (893)
T ss_pred             EEeeccCceeeeEe--eccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence            9987542 233332  234567899999999999999999999999754

>KOG0263|consensus

Probab=100.00  E-value=2e-33  Score=222.13  Aligned_cols=207  Identities=27%  Similarity=0.562  Sum_probs=187.5

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC-------------------------------cEEEEEecc
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-------------------------------KFEKTISGH   68 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-------------------------------~~~~~~~~~   68 (231)
                      .++...-...++|..|++|+++||.|..|..|++|.+...                               ...+.+.+|
T Consensus       371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH  450 (707)
T KOG0263|consen  371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH  450 (707)
T ss_pred             EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence            3555445568999999999999999999999999976521                               122346689


Q ss_pred             cccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeee
Q psy4391          69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT  148 (231)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  148 (231)
                      .++|....|+|+.++|+++++|+++|+|.+.+..++...++|..+|+++.|+|.|-++|+++.|++-++|......+++.
T Consensus       451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi  530 (707)
T KOG0263|consen  451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI  530 (707)
T ss_pred             CCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             ccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         149 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       149 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +..|-..|.|+.|+|+..|+++|+.|.++++||..+|..++.+. .+..+|.+++|||+|++|++|+.||.|++||.-.
T Consensus       531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~  608 (707)
T KOG0263|consen  531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN  608 (707)
T ss_pred             hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence            99999999999999999999999999999999999999877765 5778999999999999999999999999999744

>KOG0295|consensus

Probab=100.00  E-value=3.9e-34  Score=208.51  Aligned_cols=208  Identities=37%  Similarity=0.644  Sum_probs=190.5

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCC-CcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      +...++||+.++..++|+..|+++++++.|=.+.+||..+ ....+.+.+|...|.+++|-|.|.+|++++.|.+|+.|+
T Consensus       142 ~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We  221 (406)
T KOG0295|consen  142 LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE  221 (406)
T ss_pred             hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence            3456889999999999999999999999999999999865 445566778999999999999999999999999999999


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCC-------------
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD-------------  164 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-------------  164 (231)
                      +.++.++.++.+|...+..++.+.||.++++++.|.++++|-+.++++...+..|+.+|.+++|.|.             
T Consensus       222 ~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~  301 (406)
T KOG0295|consen  222 CDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST  301 (406)
T ss_pred             cccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence            9999999999999999999999999999999999999999999999998899999999999999753             


Q ss_pred             --CCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         165 --GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       165 --~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                        ++++.+++.|++|++||+.++.++.++..++ ..|..++|+|.|+||+++..|+++++||...
T Consensus       302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghd-nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHD-NWVRGVAFSPGGKYILSCADDKTLRVWDLKN  365 (406)
T ss_pred             CCccEEEeecccceEEEEeccCCeEEEEEeccc-ceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence              2588999999999999999999999887655 5689999999999999999999999999754

>KOG0273|consensus

Probab=100.00  E-value=3.8e-33  Score=209.37  Aligned_cols=206  Identities=28%  Similarity=0.558  Sum_probs=187.6

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      +..++..|+++|.++.|+.+|.+|++++.|+++.+||..++...+.+.-|..+-.++.|-.+. .+++++.|+.|++|.+
T Consensus       268 l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv  346 (524)
T KOG0273|consen  268 LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKV  346 (524)
T ss_pred             hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEe
Confidence            334566899999999999999999999999999999999999988888887776788997654 4789999999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCC---------CeEE
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG---------SLIV  169 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~  169 (231)
                      ....++.++.+|.+.|.++.|+|.+.+|++++.|+++++|..........+.+|...|..+.|+|+|         ..++
T Consensus       347 ~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~  426 (524)
T KOG0273|consen  347 GEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA  426 (524)
T ss_pred             cCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence            9889999999999999999999999999999999999999998888889999999999999999875         3689


Q ss_pred             EEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +++.|++|++||+..+.++..+. .+..+|.+++|+|+|+|+|+|+.||.|++|+..
T Consensus       427 sas~dstV~lwdv~~gv~i~~f~-kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~  482 (524)
T KOG0273|consen  427 SASFDSTVKLWDVESGVPIHTLM-KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK  482 (524)
T ss_pred             EeecCCeEEEEEccCCceeEeec-cCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence            99999999999999999988865 456789999999999999999999999999964

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=4.8e-32  Score=216.01  Aligned_cols=204  Identities=20%  Similarity=0.370  Sum_probs=171.3

Q ss_pred             ecccccceEEEEECC-CCCEEEEEeCCCcEEEeecCCCc-------EEEEEecccccEEEEEECCCC-CEEEEecCCCcE
Q psy4391          23 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTL   93 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i   93 (231)
                      +.+|.+.|.+++|+| ++++|++|+.|+.|++|++.++.       ....+.+|...|..++|+|++ ++|++++.|+.|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            568999999999999 88999999999999999986542       345677898999999999975 689999999999


Q ss_pred             EEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCC-eEEEEEcCCCCeEEEEe
Q psy4391          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP-VSAVHFNRDGSLIVSSS  172 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~  172 (231)
                      ++||+.+++....+..|...+.+++|+|++.+|++++.|+.|++||+++++.+..+..|.+. ...+.|.+++..+++++
T Consensus       151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G  230 (493)
T PTZ00421        151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG  230 (493)
T ss_pred             EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEe
Confidence            99999999888888889999999999999999999999999999999999988888888654 34677888887777654


Q ss_pred             ----cCCeEEEEeCCCCceeeeee-cCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCC
Q psy4391         173 ----YDGLCRIWDTASGQCLKTLI-DDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSY  226 (231)
Q Consensus       173 ----~dg~i~v~d~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~  226 (231)
                          .|+.|++||+++........ ......+....|++++.+|++++ .|+.|++||..
T Consensus       231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        231 CSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             cCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence                47899999998754332222 23334455677999999999887 49999999964

>KOG0284|consensus

Probab=100.00  E-value=1.5e-34  Score=213.42  Aligned_cols=200  Identities=32%  Similarity=0.565  Sum_probs=187.1

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      |...|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|+|....|+++++|..|++||.++++++.
T Consensus       179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~  258 (464)
T KOG0284|consen  179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA  258 (464)
T ss_pred             hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh
Confidence            44899999999999999999999999999998888888899999999999999999999999999999999999999999


Q ss_pred             eecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCC-CCeEEEEecCCeEEEEeCCC
Q psy4391         106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~v~d~~~  184 (231)
                      .+..|...|..+.|+|++++|++++.|..++++|+++-+.+..+.+|...++++.|+|- ..+|.+|+.||.|..|.+..
T Consensus       259 tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~  338 (464)
T KOG0284|consen  259 TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL  338 (464)
T ss_pred             hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccc
Confidence            99999999999999999999999999999999999988888999999999999999994 56788999999999999987


Q ss_pred             CceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       185 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .+.+..+...+...|.+++|+|-|..|++|+.|..+++|..
T Consensus       339 ~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  339 EEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             cccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            77777777778888999999999999999999999999974

>KOG0285|consensus

Probab=100.00  E-value=4.2e-33  Score=203.13  Aligned_cols=210  Identities=30%  Similarity=0.606  Sum_probs=193.2

Q ss_pred             CccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcE
Q psy4391          14 KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTL   93 (231)
Q Consensus        14 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i   93 (231)
                      ...|.+..-+.+|.+-|.|+++.|..+++++|+.|+++.|||+.++++...+.+|...|..+++++-..++++++.|+.|
T Consensus       138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V  217 (460)
T KOG0285|consen  138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV  217 (460)
T ss_pred             cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence            34455555677999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec
Q psy4391          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                      +-||++..+.++...+|-+.|.+++.+|.-..|++|+.|..+++||+++...+..+.+|..+|..+.+.|....+++|+.
T Consensus       218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~  297 (460)
T KOG0285|consen  218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH  297 (460)
T ss_pred             EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      |++|++||++.++....+.. +...+.+++.+|....+|+++.| .|+-|+.
T Consensus       298 D~tvrlWDl~agkt~~tlt~-hkksvral~lhP~e~~fASas~d-nik~w~~  347 (460)
T KOG0285|consen  298 DSTVRLWDLRAGKTMITLTH-HKKSVRALCLHPKENLFASASPD-NIKQWKL  347 (460)
T ss_pred             CceEEEeeeccCceeEeeec-ccceeeEEecCCchhhhhccCCc-cceeccC
Confidence            99999999999998777654 45568899999999888888866 6788874

>KOG0645|consensus

Probab=100.00  E-value=1.7e-31  Score=188.00  Aligned_cols=213  Identities=32%  Similarity=0.614  Sum_probs=181.4

Q ss_pred             ceeEEeecccccceEEEEECCC-CCEEEEEeCCCcEEEeecCCCc---EEEEE-ecccccEEEEEECCCCCEEEEecCCC
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGK---FEKTI-SGHKLGISDVAWSSDSRLLVSGSDDK   91 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~g   91 (231)
                      ..+..++.+|++++..++|+|- |..||+|+.|..|++|+...+.   ....+ .+|...|.+++|+|.|++|++++-|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            3456778899999999999997 8899999999999999987422   22223 25788899999999999999999999


Q ss_pred             cEEEEeCCCc--eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc---eeeeccCCCCCeEEEEEcCCCC
Q psy4391          92 TLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK---CLKTLPAHSDPVSAVHFNRDGS  166 (231)
Q Consensus        92 ~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~  166 (231)
                      ++.+|.-..+  +++..+.+|.+.|.+++|+++|++||++++|+.|.+|....+.   +...+..|...|..+.|+|...
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d  163 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED  163 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence            9999987654  5788899999999999999999999999999999999987543   5667889999999999999999


Q ss_pred             eEEEEecCCeEEEEeCC---CCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy4391         167 LIVSSSYDGLCRIWDTA---SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       167 ~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~~  230 (231)
                      +|+++++|.+|++|+-.   .-.+.+++. .+...+.+++|++.|..|++++.|+.|+||-.+.-+|
T Consensus       164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~  229 (312)
T KOG0645|consen  164 LLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS  229 (312)
T ss_pred             eeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeeccCcc
Confidence            99999999999999765   234455554 3445789999999999999999999999998654443

>KOG0284|consensus

Probab=100.00  E-value=1.8e-34  Score=213.05  Aligned_cols=206  Identities=31%  Similarity=0.541  Sum_probs=182.4

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecc-cccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      .+..++.|...|+++.|+++|.++++|+.+|.|++|+.. ...++.+..| ...|.+++|+|+...++++++||.|+|||
T Consensus       130 FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWd  208 (464)
T KOG0284|consen  130 FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWD  208 (464)
T ss_pred             HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEe
Confidence            344567899999999999999999999999999999874 3334445444 48899999999999999999999999999


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeE
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  177 (231)
                      ....+..+.+.+|.-.|.+++|+|...++++++.|..|++||.++++++..+..|...|..+.|+|++++|++++.|..+
T Consensus       209 f~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~  288 (464)
T KOG0284|consen  209 FRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSC  288 (464)
T ss_pred             ccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceE
Confidence            99888888889999899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCC
Q psy4391         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSY  226 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~s~d~~v~vwd~~  226 (231)
                      +++|+++.+.+..+.. +...+.+++|+|-. .+|.+|+.||.|..|...
T Consensus       289 kv~DiR~mkEl~~~r~-Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  289 KVFDIRTMKELFTYRG-HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             EEEehhHhHHHHHhhc-chhhheeeccccccccceeeccCCCceEEEecc
Confidence            9999997776666554 44568889999965 577889999999999853

>KOG0265|consensus

Probab=100.00  E-value=2.8e-32  Score=194.43  Aligned_cols=207  Identities=28%  Similarity=0.555  Sum_probs=181.4

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCC-CcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      .+.+|++.|..+.|+|+|..+++|+.|..|.+|++.. -+....+++|.+.|.++.|.+|++.|++++.|.+++.||.++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            3568999999999999999999999999999999643 344556789999999999999999999999999999999999


Q ss_pred             ceeeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEE
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  179 (231)
                      ++..+.++.|...+..+.-..-| .++.+++.|+++++||+++...++.+.. ...++++.|..++..+.+|+-|+.|++
T Consensus       122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikv  200 (338)
T KOG0265|consen  122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKV  200 (338)
T ss_pred             ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCceee
Confidence            99999999999988887744444 4566778899999999998887777643 457899999999999999999999999


Q ss_pred             EeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy4391         180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~~  230 (231)
                      ||++.+.....+. .+..+|+.+..+|+|.++.+-+.|+++++||.-|--|
T Consensus       201 Wd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p  250 (338)
T KOG0265|consen  201 WDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP  250 (338)
T ss_pred             eccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence            9999988777665 4566899999999999999999999999999766544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.6e-30  Score=195.47  Aligned_cols=204  Identities=44%  Similarity=0.832  Sum_probs=183.3

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      ++.+|...|.++.|+|+++++++++.+|.+++|+..++.....+..+...+..+.|+|+++.+++++.+|.+++|++.++
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            45689999999999999999999999999999999888777778888888889999999999999999999999999987


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      +....+..+...+.++.|++++.++++++.++.+.+||+++++....+..|...+.+++|+|++.++++++.++.+.+||
T Consensus        84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d  163 (289)
T cd00200          84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD  163 (289)
T ss_pred             cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence            77778888888899999999988999888899999999998888888888888999999999999998888899999999


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +++++....+. .+...+..+.|+|+++.+++++.|+.|++||..
T Consensus       164 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  207 (289)
T cd00200         164 LRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS  207 (289)
T ss_pred             ccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence            99887766655 444578899999999999999999999999974

>KOG0295|consensus

Probab=100.00  E-value=2e-31  Score=194.42  Aligned_cols=202  Identities=36%  Similarity=0.638  Sum_probs=188.1

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      ++.+|...|.++.|-|.|.+|+++++|.+|+.|+..++..+..+.+|..-|..+..+.||..+++++.|.++++|-+.++
T Consensus       188 s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~  267 (406)
T KOG0295|consen  188 SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK  267 (406)
T ss_pred             HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeecCCCcceEEEEECCC---------------CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCC
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQ---------------SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS  166 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  166 (231)
                      ++...++.|...+.+++|-|.               +.++++++.|++|++||+.++.++..+.+|...|..++|+|.|+
T Consensus       268 ~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk  347 (406)
T KOG0295|consen  268 QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK  347 (406)
T ss_pred             hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCe
Confidence            888888999888999988762               35899999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         167 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      ||+++..|+++++||+.+++++..+. .+..-+++++|+.+-.++++|+.|-.+++|.
T Consensus       348 yi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  348 YILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEeccccceeeeee
Confidence            99999999999999999999988876 4445578899999999999999999999996

>KOG0318|consensus

Probab=100.00  E-value=3.5e-30  Score=195.95  Aligned_cols=215  Identities=27%  Similarity=0.489  Sum_probs=178.7

Q ss_pred             CccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe---cccccEEEEEECCCCCEEEEecCC
Q psy4391          14 KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSSDSRLLVSGSDD   90 (231)
Q Consensus        14 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~   90 (231)
                      -|.+..+.+++.|...|.++.|+|||+++++++.||.+.+||-.+++....+.   .|.+.|.+++|+||+..+++++.|
T Consensus       177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD  256 (603)
T KOG0318|consen  177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD  256 (603)
T ss_pred             CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence            45677888899999999999999999999999999999999999999999887   789999999999999999999999


Q ss_pred             CcEEEEeCCCceeeee-------------------------------------------ecCCCcceEEEEECCCCCEEE
Q psy4391          91 KTLKIWELSSGKCLKT-------------------------------------------LKGHSNYVFCCNFNPQSNLIV  127 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~-------------------------------------------~~~~~~~v~~~~~~~~~~~l~  127 (231)
                      .++++||+.+.+.+++                                           +.+|...|+++..+|++.+|+
T Consensus       257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~  336 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY  336 (603)
T ss_pred             ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence            9999999876543322                                           245778899999999999999


Q ss_pred             EeecCCcEEEEECCCCcee-----------eecc---------------------------C------------------
Q psy4391         128 SGSFDESVRIWDVRTGKCL-----------KTLP---------------------------A------------------  151 (231)
Q Consensus       128 ~~~~d~~i~v~d~~~~~~~-----------~~~~---------------------------~------------------  151 (231)
                      +|+.||.|.-||..++..-           ..+.                           .                  
T Consensus       337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d  416 (603)
T KOG0318|consen  337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD  416 (603)
T ss_pred             eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence            9999999999998654210           0000                           0                  


Q ss_pred             -----------------C--------CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeee-eecCCCCCeEEEEEC
Q psy4391         152 -----------------H--------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT-LIDDDNPPVSFVKFS  205 (231)
Q Consensus       152 -----------------~--------~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~~i~~~~~s  205 (231)
                                       +        .-...+++++|++..+++|++||.+++|.+.......+ ....+..+++.+++|
T Consensus       417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS  496 (603)
T KOG0318|consen  417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS  496 (603)
T ss_pred             CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence                             0        00134678999999999999999999999987553332 344667889999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCC
Q psy4391         206 PNGKYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       206 ~~g~~l~~~s~d~~v~vwd~~~~  228 (231)
                      ||+.|||++...+.|.+||...+
T Consensus       497 pd~~yla~~Da~rkvv~yd~~s~  519 (603)
T KOG0318|consen  497 PDGAYLAAGDASRKVVLYDVASR  519 (603)
T ss_pred             CCCcEEEEeccCCcEEEEEcccC
Confidence            99999999999999999997443

>KOG0291|consensus

Probab=100.00  E-value=1.1e-30  Score=206.16  Aligned_cols=211  Identities=27%  Similarity=0.559  Sum_probs=185.6

Q ss_pred             ceeEEeecccccceEEEEECCCCCEEEEEeC-CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEE
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~   95 (231)
                      +.+.+.+.--...|..++|+..|++||.|+. -|.+.||+......+-...+|...+.+++++|||++|++|+.||.|++
T Consensus       297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv  376 (893)
T KOG0291|consen  297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV  376 (893)
T ss_pred             ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence            4444444444467999999999999998654 489999999888888888899999999999999999999999999999


Q ss_pred             EeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC-CCeEEEEEcCCCCeEEEEecC
Q psy4391          96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      ||...+-+..++..|.+.++.+.|+..++.+++.+-||+|+.||+......+.+.... -...+++..|.|..+.+|+.|
T Consensus       377 Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d  456 (893)
T KOG0291|consen  377 WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQD  456 (893)
T ss_pred             EeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccc
Confidence            9999999999999999999999999999999999999999999999888877776432 345788999999999999998


Q ss_pred             C-eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q psy4391         175 G-LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       175 g-~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~  228 (231)
                      . .|.+|++.+|+.+..+. .|..||..+.|+|+|..|+++|.|.+|++||.+..
T Consensus       457 ~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  457 SFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             eEEEEEEEeecCeeeehhc-CCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence            6 79999999999776654 56678999999999999999999999999997654

>KOG0316|consensus

Probab=100.00  E-value=7.9e-31  Score=181.56  Aligned_cols=200  Identities=33%  Similarity=0.566  Sum_probs=182.0

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      ..+..|.++|.++.|+-+|++.++++.|.+|++|+...+...+...+|...|.+++.+.|...+++|+.|..+.+||+.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T   90 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT   90 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCC--ceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      ++..+.+++|...|..+.|+.+...+++|+.|..+++||.++.  ++++.+....+.|.++..+  +..+++|+.||+++
T Consensus        91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvR  168 (307)
T KOG0316|consen   91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVR  168 (307)
T ss_pred             CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEE
Confidence            9999999999999999999999999999999999999999865  4566666667788887775  56789999999999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .||++.++....   .-..||+++.|++||+.+++++.|+.+++.|-
T Consensus       169 tydiR~G~l~sD---y~g~pit~vs~s~d~nc~La~~l~stlrLlDk  212 (307)
T KOG0316|consen  169 TYDIRKGTLSSD---YFGHPITSVSFSKDGNCSLASSLDSTLRLLDK  212 (307)
T ss_pred             EEEeecceeehh---hcCCcceeEEecCCCCEEEEeeccceeeeccc
Confidence            999999875433   34568999999999999999999999999985

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=7.9e-30  Score=204.66  Aligned_cols=206  Identities=21%  Similarity=0.348  Sum_probs=164.5

Q ss_pred             EEeecccccceEEEEECCC-CCEEEEEeCCCcEEEeecCCCc--------EEEEEecccccEEEEEECCCCCEE-EEecC
Q psy4391          20 KFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGK--------FEKTISGHKLGISDVAWSSDSRLL-VSGSD   89 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~   89 (231)
                      ...+.+|.+.|.+++|+|+ +.+|++|+.||.|++|++.++.        ....+.+|...|.+++|+|++..+ ++++.
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~  146 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF  146 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence            3567799999999999996 7899999999999999986532        233567888899999999988764 68899


Q ss_pred             CCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEE-----EEEcCC
Q psy4391          90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSA-----VHFNRD  164 (231)
Q Consensus        90 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~-----~~~~~~  164 (231)
                      |+.|++||+.+++....+. +...+.+++|+|+|.+|++++.|+.|++||+++++.+..+..|.+.+..     ..|+++
T Consensus       147 DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d  225 (568)
T PTZ00420        147 DSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD  225 (568)
T ss_pred             CCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence            9999999999988766665 4567999999999999999999999999999999988888888776433     234688


Q ss_pred             CCeEEEEecCC----eEEEEeCCC-CceeeeeecCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         165 GSLIVSSSYDG----LCRIWDTAS-GQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       165 ~~~l~~~~~dg----~i~v~d~~~-~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +.++++++.++    .|++||++. .+.+..+..... ..+......++|.++++|+.|+.|++|+..
T Consensus       226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence            89999888774    799999995 444544332222 222223335568899999999999999963

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.6e-29  Score=190.06  Aligned_cols=202  Identities=43%  Similarity=0.790  Sum_probs=180.9

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      .+..|...|.++.|+++++++++++.+|.+.+|+..+++....+..|...+.++.|+|+++++++++.++.+++||+.++
T Consensus        88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~  167 (289)
T cd00200          88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG  167 (289)
T ss_pred             EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc
Confidence            34578889999999999889988888999999999888877788878888999999999888888888999999999988


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      +....+..+...+.++.|+|+++.+++++.++.+++||++.++.+..+..+...+.++.|+|++.++++++.+|.+++||
T Consensus       168 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~  247 (289)
T cd00200         168 KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD  247 (289)
T ss_pred             ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence            88888888888899999999999999999999999999999888888878888999999999988888888899999999


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      +.+++....+. .+...+..++|+|++++|++++.||.|++|+
T Consensus       248 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         248 LRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            99887776665 4556789999999999999999999999996

>KOG0315|consensus

Probab=99.98  E-value=1.1e-29  Score=177.16  Aligned_cols=204  Identities=24%  Similarity=0.526  Sum_probs=170.1

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc--EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      +++-..+.|..+...|+++.||+|+ .-.|++||+.+.+  .+..+.+|...|.++.|..+|+.+++|++||++++||++
T Consensus        35 Tiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR  113 (311)
T KOG0315|consen   35 TIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR  113 (311)
T ss_pred             EEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence            3333346799999999999998876 5689999997654  577888998999999999999999999999999999999


Q ss_pred             CceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec-cCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      ...+.+.++ +.++|.++..+|+...|++|..+|.|++||+....+...+ .....++.++...|||.+++++...|...
T Consensus       114 ~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cy  192 (311)
T KOG0315|consen  114 SLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCY  192 (311)
T ss_pred             Ccccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence            876666665 5688999999999999999999999999999987665544 33446899999999999999999999999


Q ss_pred             EEeCCCCceeeee-----ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         179 IWDTASGQCLKTL-----IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       179 v~d~~~~~~~~~~-----~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +|++-+.+....+     ...+..-+..+.+|||+++||+++.|.+++||+.-.
T Consensus       193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             EEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence            9998775432222     223445577788999999999999999999998643

>KOG0282|consensus

Probab=99.98  E-value=1.2e-31  Score=201.95  Aligned_cols=212  Identities=29%  Similarity=0.600  Sum_probs=191.4

Q ss_pred             eeEEeecccccceEEEEECC-CCCEEEEEeCCCcEEEeecCC-CcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEE
Q psy4391          18 VLKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~   95 (231)
                      .+.+++.||+..|+++.|.| .+.+|++++.|+.|++|++.+ +++++.+.+|..+|.+++|+++|..+++++-|+.+++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            35678889999999999999 888999999999999999875 7889999999999999999999999999999999999


Q ss_pred             EeCCCceeeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC
Q psy4391          96 WELSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      ||+++|++...+.. ...+.++.++|++ +.+++|+.|+.|+.||+++++.+.....|-++|..+.|-++|+.+++.+.|
T Consensus       285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd  363 (503)
T KOG0282|consen  285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD  363 (503)
T ss_pred             eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence            99999999888864 4567889999998 889999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy4391         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~~  230 (231)
                      +.+++|+.+..-.+............++..+|++.++++-+.|+.|-+|.+.|..+
T Consensus       364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR  419 (503)
T ss_pred             ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence            99999999887766655555555566789999999999999999999999877654

>KOG0318|consensus

Probab=99.97  E-value=3.4e-29  Score=190.63  Aligned_cols=205  Identities=24%  Similarity=0.486  Sum_probs=167.2

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC--cEEEEEecccccEEEEEECCCCCEEEEecCC----CcEE
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSRLLVSGSDD----KTLK   94 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----g~i~   94 (231)
                      ....+|...++-..|+|.|.++|+|...|.|||||....  -+..++.-..++|.+++|+++++.|++.++.    |.+.
T Consensus        53 ~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F  132 (603)
T KOG0318|consen   53 DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVF  132 (603)
T ss_pred             eeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEE
Confidence            344578889999999999999999999999999997532  2344555566788999999998888776553    3566


Q ss_pred             EEeCCC-----------------------------------------ceeeeeecCCCcceEEEEECCCCCEEEEeecCC
Q psy4391          95 IWELSS-----------------------------------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE  133 (231)
Q Consensus        95 ~~d~~~-----------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  133 (231)
                      +||.-+                                         .+....++.|...|.++.++|||.++++.+.||
T Consensus       133 ~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg  212 (603)
T KOG0318|consen  133 LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG  212 (603)
T ss_pred             EecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc
Confidence            776421                                         111122345777899999999999999999999


Q ss_pred             cEEEEECCCCceeeecc---CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeee-------------------
Q psy4391         134 SVRIWDVRTGKCLKTLP---AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------------------  191 (231)
Q Consensus       134 ~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------------------  191 (231)
                      .+.+||-.+++.+..+.   +|.+.|.+++|+||+..+++++.|.++++||+.+.++++++                   
T Consensus       213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~  292 (603)
T KOG0318|consen  213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH  292 (603)
T ss_pred             cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence            99999999999888887   89999999999999999999999999999999887654442                   


Q ss_pred             -----------------------ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         192 -----------------------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       192 -----------------------~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                                             ...+...|+++..+|++++|++|+.||.|.-||.
T Consensus       293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~  349 (603)
T KOG0318|consen  293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDS  349 (603)
T ss_pred             EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEec
Confidence                                   1224456889999999999999999999999996

>KOG0289|consensus

Probab=99.97  E-value=1.1e-29  Score=189.30  Aligned_cols=204  Identities=26%  Similarity=0.460  Sum_probs=184.9

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      .++.||...|+.+.++|+...+++++.|..|++|..-..........|..+|+.+..+|.|.++++++.|+...+.|+++
T Consensus       255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~  334 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS  334 (506)
T ss_pred             hhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccC
Confidence            46789999999999999999999999999999999876666667778899999999999999999999999999999999


Q ss_pred             ceeeeeecCC--CcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         101 GKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       101 ~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      +..+......  .-.+.+.+|+|||.++.+|..|+.+++||+..+..+..|.+|.++|.+++|+.+|-+|++++.|+.|+
T Consensus       335 g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~  414 (506)
T KOG0289|consen  335 GSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVK  414 (506)
T ss_pred             CcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEE
Confidence            9887766542  23478899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      +||++.-+..+++.......+..+.|++.|++|+.++.|=+|.+++
T Consensus       415 lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  415 LWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             EEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            9999998888888877777899999999999999998776776666

>KOG0296|consensus

Probab=99.97  E-value=1.1e-28  Score=180.29  Aligned_cols=205  Identities=22%  Similarity=0.435  Sum_probs=178.2

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      .-+.+.+|+.+|+++.|+.+|.+||+|+.+|.|+||...++.....+...-..+.=+.|+|.+..+++|+.||.+.+|.+
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence            45678899999999999999999999999999999999999888888755667888899999999999999999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec-----------------------------
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-----------------------------  149 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-----------------------------  149 (231)
                      .++...+.+.+|..++.+=.|.|+|+.++++..||+|++||+.+++++..+                             
T Consensus       178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~  257 (399)
T KOG0296|consen  178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA  257 (399)
T ss_pred             CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence            987777888999999999999999999999999999999999876543221                             


Q ss_pred             ------------------------------------------------------------------cCCCCCeEEEEEcC
Q psy4391         150 ------------------------------------------------------------------PAHSDPVSAVHFNR  163 (231)
Q Consensus       150 ------------------------------------------------------------------~~~~~~v~~~~~~~  163 (231)
                                                                                        -.|..+|..+.|.+
T Consensus       258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~  337 (399)
T KOG0296|consen  258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN  337 (399)
T ss_pred             EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC
Confidence                                                                              11334566677777


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                       ..+|++++.+|.|+.||.++|+++..... +...|..++++|++++++++|.|+..+||+.
T Consensus       338 -t~~l~t~c~~g~v~~wDaRtG~l~~~y~G-H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  338 -TDYLLTACANGKVRQWDARTGQLKFTYTG-HQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             -cchheeeccCceEEeeeccccceEEEEec-CchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence             67889999999999999999998887654 5567899999999999999999999999974

>KOG0296|consensus

Probab=99.97  E-value=5.7e-29  Score=181.73  Aligned_cols=204  Identities=22%  Similarity=0.429  Sum_probs=184.6

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      .++..|+.+|.+++.+|+.+++++|+.|..-.+|++.++.....+.+|+..|+++.|+.+|.+||+|+.+|.|++|...+
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st  137 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST  137 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEE
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~  180 (231)
                      +.....+....+.+.-+.|+|.+.+++.|+.||.+..|.+.++...+.+.+|..++++=.|.|+|+.++++..||+|++|
T Consensus       138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~W  217 (399)
T KOG0296|consen  138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVW  217 (399)
T ss_pred             CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEE
Confidence            98877776556778889999999999999999999999999987788899999999999999999999999999999999


Q ss_pred             eCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       181 d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      |+.+++.+..+..........+.++..+..++.|+.++.+++-.
T Consensus       218 n~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~  261 (399)
T KOG0296|consen  218 NPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN  261 (399)
T ss_pred             ecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence            99999988887655555566677888888888888777776654

>KOG0643|consensus

Probab=99.97  E-value=7.6e-29  Score=174.55  Aligned_cols=203  Identities=26%  Similarity=0.434  Sum_probs=183.5

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      .++||.++++.+.|+.+|++|.+++.|....+|-..+++.+-...+|.+.|+++..+-+.+.+++|+.|.++++||++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46799999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeec-----CCcEEEEECC-------CCceeeeccCCCCCeEEEEEcCCCCeEE
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-----DESVRIWDVR-------TGKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~v~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~  169 (231)
                      +.+..++. ...|..+.|+++|++++....     .+.|.++|++       ...++..+..+...++.+-|.|-+++|+
T Consensus        85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence            99998875 467889999999999887654     3568999998       3445667777788999999999999999


Q ss_pred             EEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +|..||.|..||+++++.+..-...+...|+.+.+++|..++++++.|.+-++||.
T Consensus       164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~  219 (327)
T KOG0643|consen  164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV  219 (327)
T ss_pred             EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence            99999999999999987766665667779999999999999999999999999996

>KOG0283|consensus

Probab=99.97  E-value=2.1e-29  Score=200.86  Aligned_cols=201  Identities=29%  Similarity=0.612  Sum_probs=167.0

Q ss_pred             eec-ccccceEEEEECCCCCEEEEEeCCCcEEEeecCC--------------------------------C---------
Q psy4391          22 TLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--------------------------------G---------   59 (231)
Q Consensus        22 ~~~-~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~--------------------------------~---------   59 (231)
                      .+. .|.+.|.++.||+||++||+|+.|+.|+||.+..                                .         
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            344 7999999999999999999999999999998654                                0         


Q ss_pred             -------------------cEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEEC
Q psy4391          60 -------------------KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFN  120 (231)
Q Consensus        60 -------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  120 (231)
                                         +....+.+|...|.++.|+.+ ++|++++.|.+|+||++...++++.+. |.+.|+|++|+
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFn  418 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFN  418 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEec
Confidence                               011234467888999999975 589999999999999999999998886 89999999999


Q ss_pred             C-CCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecC-----
Q psy4391         121 P-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-----  194 (231)
Q Consensus       121 ~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----  194 (231)
                      | |.+++++|+-|+.+++|++...+.+.-... ..-|++++|.|||+..+.|+.+|.+++|+....+......-.     
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence            9 679999999999999999987765544444 478999999999999999999999999999887765443211     


Q ss_pred             --CCCCeEEEEECCCCC-EEEEEeCCCeEEEEeC
Q psy4391         195 --DNPPVSFVKFSPNGK-YILAATLDNTLKLWDS  225 (231)
Q Consensus       195 --~~~~i~~~~~s~~g~-~l~~~s~d~~v~vwd~  225 (231)
                        ....|+.+.|.|... -|++.+.|.+|||||.
T Consensus       498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             cccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence              122688999887543 5888889999999997

>KOG0645|consensus

Probab=99.97  E-value=1.4e-28  Score=173.41  Aligned_cols=202  Identities=31%  Similarity=0.548  Sum_probs=173.9

Q ss_pred             ceeEEee-cccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC--cEEEEEecccccEEEEEECCCCCEEEEecCCCcE
Q psy4391          17 YVLKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTL   93 (231)
Q Consensus        17 ~~~~~~~-~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i   93 (231)
                      +..+..+ .+|++.|.+++|+|.|++|++|+.|.++-||...++  +....+.+|...|.+++|+++|++||++++|..|
T Consensus        50 ~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV  129 (312)
T KOG0645|consen   50 WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV  129 (312)
T ss_pred             EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE
Confidence            4444444 379999999999999999999999999999987654  4567788999999999999999999999999999


Q ss_pred             EEEeCCC---ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECC---CCceeeeccCCCCCeEEEEEcCCCCe
Q psy4391          94 KIWELSS---GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR---TGKCLKTLPAHSDPVSAVHFNRDGSL  167 (231)
Q Consensus        94 ~~~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~  167 (231)
                      .+|.+..   .++...++.|...|..+.|+|...+|++++.|.+|++|.-.   .-.+...+..|...|.+++|+|.|..
T Consensus       130 WiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r  209 (312)
T KOG0645|consen  130 WIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR  209 (312)
T ss_pred             EEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce
Confidence            9999874   35677888999999999999999999999999999999765   23467889999999999999999999


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      |++++.|+++++|.+.+     .+...+..++..++|.  ...+++++.|+.|++|.-
T Consensus       210 l~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~  260 (312)
T KOG0645|consen  210 LVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKE  260 (312)
T ss_pred             EEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence            99999999999997652     2333455678889998  457899999999999974

>KOG0285|consensus

Probab=99.97  E-value=1.2e-29  Score=185.24  Aligned_cols=207  Identities=28%  Similarity=0.523  Sum_probs=190.4

Q ss_pred             ceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      ..++.++.||...|..+++|+--.++++++.|+.|+-||++..+..+...+|-.+|.+++.+|.-..|++++.|..+++|
T Consensus       183 g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvW  262 (460)
T KOG0285|consen  183 GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVW  262 (460)
T ss_pred             CeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEe
Confidence            45888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCe
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  176 (231)
                      |+++...+..+.+|...|..+.+.|....+++|+.|++|++||++.|+....+..|...+++++.+|....+|+++.|. 
T Consensus       263 DiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-  341 (460)
T KOG0285|consen  263 DIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-  341 (460)
T ss_pred             eecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-
Confidence            9999999999999999999999999888999999999999999999999999999999999999999999999888765 


Q ss_pred             EEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         177 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       177 i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      |+-|++..+..+.. ...+...++.++.+.|| ++++|+.+|.+.+||..
T Consensus       342 ik~w~~p~g~f~~n-lsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwk  389 (460)
T KOG0285|consen  342 IKQWKLPEGEFLQN-LSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWK  389 (460)
T ss_pred             ceeccCCccchhhc-cccccceeeeeeeccCc-eEEEcCCceEEEEEecC
Confidence            78899999988777 44566778889988886 67888889999999964

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2.6e-28  Score=207.47  Aligned_cols=200  Identities=23%  Similarity=0.448  Sum_probs=167.2

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC----c----EEEEEecccccEEEEEECC-CCCEEEEecCCCcEE
Q psy4391          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----K----FEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLK   94 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~   94 (231)
                      ..|...|.+++|+|+|+++++|+.|+.|++|+....    .    ....+. +...+.+++|++ ++.+|++++.||.|+
T Consensus       480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            358889999999999999999999999999997431    1    112222 245688999987 477899999999999


Q ss_pred             EEeCCCceeeeeecCCCcceEEEEECC-CCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEc-CCCCeEEEEe
Q psy4391          95 IWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSS  172 (231)
Q Consensus        95 ~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  172 (231)
                      +||+.+++.+..+.+|...|.+++|+| ++.+|++|+.|+.|++||++++..+..+..+ ..+.++.|+ +++.++++|+
T Consensus       559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs  637 (793)
T PLN00181        559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGS  637 (793)
T ss_pred             EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEe
Confidence            999999988888999999999999997 7899999999999999999998887777654 578899995 5799999999


Q ss_pred             cCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         173 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      .||.|++||+++.+........+...|..+.|. ++.+|++++.|+.|++||..
T Consensus       638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            999999999987653222233566788999997 67899999999999999964

>KOG0278|consensus

Probab=99.97  E-value=1.4e-29  Score=176.85  Aligned_cols=202  Identities=25%  Similarity=0.463  Sum_probs=177.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc-EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      .|+.-|.+++|+.|.++|++|+.+..++|||....+ ...++.+|.+.|..+.|....+.|++...|+.||+||..++..
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~  177 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE  177 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence            477789999999999999999999999999986543 4567889999999999999888999999999999999999999


Q ss_pred             eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCC
Q psy4391         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (231)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (231)
                      ++.+.. ...+.++.++++|.++.++. .+.|++||..+...++.... ...|.+...+|+...+++|+.|..++.||..
T Consensus       178 v~sL~~-~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~  254 (334)
T KOG0278|consen  178 VQSLEF-NSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYN  254 (334)
T ss_pred             EEEEec-CCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEecc
Confidence            988874 56789999999998876654 46799999998888777654 4567888999999999999999999999999


Q ss_pred             CCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q psy4391         184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCL  229 (231)
Q Consensus       184 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~  229 (231)
                      +++.+......+..+|.++.|+|+|...++||.||+|++|...|.-
T Consensus       255 TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  255 TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             CCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            9998887656677899999999999999999999999999987754

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=5e-28  Score=193.08  Aligned_cols=198  Identities=23%  Similarity=0.385  Sum_probs=161.3

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEE-------------EEEecccccEEEEEECC-CCCEEEEecCCCcE
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------------KTISGHKLGISDVAWSS-DSRLLVSGSDDKTL   93 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i   93 (231)
                      ..|.....++++..+++++.+.....|+...+...             ..+.+|...|.+++|+| ++++|++++.|+.|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            45556666777666677666666666764333211             23567888999999999 78899999999999


Q ss_pred             EEEeCCCc-------eeeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCC
Q psy4391          94 KIWELSSG-------KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG  165 (231)
Q Consensus        94 ~~~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~  165 (231)
                      ++||+.++       +.+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+..|...|.+++|+|++
T Consensus       101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG  180 (493)
T PTZ00421        101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG  180 (493)
T ss_pred             EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence            99999764       2456778899999999999985 799999999999999999999888888899999999999999


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe----CCCeEEEEeC
Q psy4391         166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT----LDNTLKLWDS  225 (231)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s----~d~~v~vwd~  225 (231)
                      .+|++++.|+.|++||+++++.+..+..+.......+.|.+++..+++++    .|+.|++||.
T Consensus       181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl  244 (493)
T PTZ00421        181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT  244 (493)
T ss_pred             CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence            99999999999999999999887776555444445677999888777654    4789999996

>KOG0276|consensus

Probab=99.97  E-value=3.2e-29  Score=194.43  Aligned_cols=211  Identities=24%  Similarity=0.452  Sum_probs=190.3

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      .+.++..+..+|.++.|+|...+++++-.+|.+.||+.++...++.+.-...+|.+..|-+-.+.+++|++|..|++|+.
T Consensus         5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence            34455668899999999999999999999999999999999999998888889999999998899999999999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCC-ceeeeccCCCCCeEEEEEcC-CCCeEEEEecCCe
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGL  176 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~  176 (231)
                      .+++.++.+..|.+.+.+++.+|...++++++.|-.|++||-+.+ .+.+.+.+|+..|.+++|+| |.+.+++++-|++
T Consensus        85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence            999999999999999999999999999999999999999999865 46778999999999999999 6679999999999


Q ss_pred             EEEEeCCCCceeeeeecCCCCCeEEEEECCCC--CEEEEEeCCCeEEEEeCCCCCC
Q psy4391         177 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG--KYILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       177 i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~s~d~~v~vwd~~~~~~  230 (231)
                      |++|.+....+..++. .+...|+++.+-+-|  .+|++|+.|..|+|||.+.+.|
T Consensus       165 VKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C  219 (794)
T KOG0276|consen  165 VKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC  219 (794)
T ss_pred             EEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence            9999999888777776 455678999987654  6999999999999999876544

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=8.5e-28  Score=204.33  Aligned_cols=203  Identities=25%  Similarity=0.339  Sum_probs=170.5

Q ss_pred             EeecccccceEEEEECC-CCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEEC-CCCCEEEEecCCCcEEEEeC
Q psy4391          21 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ..+.+|.+.|.+++|+| ++.+|++|+.||.|++||+.++.....+..+ ..+.++.|. +++..+++|+.||.|++||+
T Consensus       569 ~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~  647 (793)
T PLN00181        569 TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDL  647 (793)
T ss_pred             EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            44568999999999997 7889999999999999999888777776644 578889995 57899999999999999999


Q ss_pred             CCce-eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCC------ceeeeccCCCCCeEEEEEcCCCCeEEEE
Q psy4391          99 SSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG------KCLKTLPAHSDPVSAVHFNRDGSLIVSS  171 (231)
Q Consensus        99 ~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~  171 (231)
                      .+.+ ....+.+|...+.++.|. ++..+++++.|+.|++||++.+      ..+..+..|...+..++|+|++.+|++|
T Consensus       648 ~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasg  726 (793)
T PLN00181        648 RNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATG  726 (793)
T ss_pred             CCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEE
Confidence            8755 456677888899999997 6789999999999999999743      4567788888899999999999999999


Q ss_pred             ecCCeEEEEeCCCCceeeeee------------cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         172 SYDGLCRIWDTASGQCLKTLI------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~------------~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +.|+.+.+|+...........            ......|..++|+|++..|++++.||.|+|||.
T Consensus       727 s~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        727 SETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             eCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            999999999976553322111            122345899999999999999999999999985

>KOG0273|consensus

Probab=99.97  E-value=2.5e-28  Score=183.63  Aligned_cols=197  Identities=29%  Similarity=0.526  Sum_probs=177.0

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      |...-..+.|-. ...+++++.||.|+++.+...+....+.+|.+.|.++.|.|.+..|++++.|+++++|.........
T Consensus       317 ~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~  395 (524)
T KOG0273|consen  317 HSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH  395 (524)
T ss_pred             ccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence            444445567753 3467888999999999998888899999999999999999999999999999999999999888889


Q ss_pred             eecCCCcceEEEEECCCC---------CEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCe
Q psy4391         106 TLKGHSNYVFCCNFNPQS---------NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~---------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  176 (231)
                      .+.+|...|..+.|+|.|         ..+++++.|++|++||+..+.++..+..|..+|++++|+|+|+++|+|+.||.
T Consensus       396 ~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~  475 (524)
T KOG0273|consen  396 DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGC  475 (524)
T ss_pred             hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCe
Confidence            999999999999999964         46899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         177 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       177 i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      |.+|+.++++..+....  ...|..++|+.+|..|.++-.|+.+++-|.
T Consensus       476 V~iws~~~~~l~~s~~~--~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  476 VHIWSTKTGKLVKSYQG--TGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             eEeccccchheeEeecC--CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            99999999998877644  345889999999999999999999999875

>KOG0640|consensus

Probab=99.97  E-value=4.7e-29  Score=179.23  Aligned_cols=207  Identities=29%  Similarity=0.552  Sum_probs=175.8

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCC------C------------cEEEEEecccccEEEEEECCCC
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD------G------------KFEKTISGHKLGISDVAWSSDS   81 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~------~------------~~~~~~~~~~~~v~~~~~~~~~   81 (231)
                      ...+..|+..+.+-+|++||.++++|+.|-.|+|.|++.      .            ...+.+-.|...|..+.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            345678999999999999999999999999999999751      0            1234455677889999999999


Q ss_pred             CEEEEecCCCcEEEEeCCCceeeeeec--CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec---cCCCCCe
Q psy4391          82 RLLVSGSDDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL---PAHSDPV  156 (231)
Q Consensus        82 ~~l~~~~~~g~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v  156 (231)
                      ..|++++.|++|+++|...-...+.++  .....+.++.|+|.|.+++.|.....+++||+++-++...-   ..|.+.|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            999999999999999997643322222  23467999999999999999999999999999998875443   3577899


Q ss_pred             EEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeec-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         157 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       157 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      .++.+++.+++.++++.||.|++||--+++++.++.. +.+..|.+..|+.+|+|+++.+.|..|++|...
T Consensus       265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence            9999999999999999999999999999999888765 455678889999999999999999999999964

>KOG0310|consensus

Probab=99.97  E-value=3e-29  Score=189.15  Aligned_cols=198  Identities=30%  Similarity=0.570  Sum_probs=169.5

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCC-EEEEecCCCcEEEEeCCCceee
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      ....+.++.|-.||+++++|+..|.|++||..+....+.+.+|..++....|+|+++ .+++|++|+.+++||+.+....
T Consensus        67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~  146 (487)
T KOG0310|consen   67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ  146 (487)
T ss_pred             hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE
Confidence            456799999999999999999999999999666555667788999999999999655 5678888899999999998876


Q ss_pred             eeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCC-ceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeC
Q psy4391         105 KTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (231)
                      ..+.+|.+.|.+.+|+|.. ..+++|+.||.|++||++.. ..+..+ .|..+|..+.+.|.|..+++++ ...+++||+
T Consensus       147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl  224 (487)
T KOG0310|consen  147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDL  224 (487)
T ss_pred             EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEe
Confidence            6889999999999999975 47899999999999999987 444444 5788999999999999998876 678999999


Q ss_pred             CCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       183 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .+|..+......+...|+++.+..++..|++++.|+.|++||.
T Consensus       225 ~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  225 TTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             cCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence            9665544444446678999999999999999999999999994

>KOG0292|consensus

Probab=99.97  E-value=7.6e-29  Score=198.98  Aligned_cols=210  Identities=30%  Similarity=0.531  Sum_probs=185.7

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      .+.+|.++|..+.|+|++.++++|+.|-.|++|+..+.++...+.+|..-|..+.|++.-..|+++++|-+|++|+..+.
T Consensus        46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr  125 (1202)
T KOG0292|consen   46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR  125 (1202)
T ss_pred             hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence            45589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc---------------------------e--eeeccCC
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK---------------------------C--LKTLPAH  152 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------------------------~--~~~~~~~  152 (231)
                      +++..+.+|+..|.|..|+|...++++++-|.+|+|||+..-+                           .  ...+.+|
T Consensus       126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH  205 (1202)
T KOG0292|consen  126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH  205 (1202)
T ss_pred             ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence            9999999999999999999999999999999999999984210                           0  1234577


Q ss_pred             CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceee-eeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCC
Q psy4391         153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLPK  231 (231)
Q Consensus       153 ~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~~~  231 (231)
                      ...|.-++|+|.-..+++|+.|..|++|.....+... .....+...|+++-|+|...++++.+.|+.|+|||...+.++
T Consensus       206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v  285 (1202)
T KOG0292|consen  206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV  285 (1202)
T ss_pred             ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence            7888999999999999999999999999886554322 223456668999999999999999999999999999887763

>KOG0319|consensus

Probab=99.97  E-value=4.8e-29  Score=196.33  Aligned_cols=200  Identities=33%  Similarity=0.568  Sum_probs=181.5

Q ss_pred             cccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCc---EEEE------EecccccEEEEEECCCCCEEEEecCCCcE
Q psy4391          24 AGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGK---FEKT------ISGHKLGISDVAWSSDSRLLVSGSDDKTL   93 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~---~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~~g~i   93 (231)
                      .+|+..|.+++++..+. ++++++.|.++++|++...+   ....      ...|...|.+++.+|+.+.||||+.|.+.
T Consensus       408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta  487 (775)
T KOG0319|consen  408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA  487 (775)
T ss_pred             cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce
Confidence            48999999999987654 78999999999999986421   1111      23577889999999999999999999999


Q ss_pred             EEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec
Q psy4391          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                      ++|+++..+....+.+|...+.++.|+|..+.++|++.|.+|++|.+.+..+++++.+|...|....|-.+++.|++++.
T Consensus       488 KiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a  567 (775)
T KOG0319|consen  488 KIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA  567 (775)
T ss_pred             eeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC
Confidence            99999998999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      ||.+++|++.+++++.++- .+...|.+++.+|.+.++++|+.||+|.+|.
T Consensus       568 dGliKlWnikt~eC~~tlD-~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  568 DGLIKLWNIKTNECEMTLD-AHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             CCcEEEEeccchhhhhhhh-hccceeEEEeecCccceeEecCCCeEEEEee
Confidence            9999999999999988864 4556799999999999999999999999996

>KOG0276|consensus

Probab=99.97  E-value=1e-28  Score=191.62  Aligned_cols=198  Identities=29%  Similarity=0.549  Sum_probs=182.9

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC-ceeee
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCLK  105 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~-~~~~~  105 (231)
                      ..+|.+..|-.-.+++++|+.|..|++|+..++..+..+..|..-+.+++.+|...+++++++|-.|++||.+. ..+.+
T Consensus        55 ~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q  134 (794)
T KOG0276|consen   55 EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ  134 (794)
T ss_pred             ccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee
Confidence            45788889988889999999999999999999999999999999999999999999999999999999999986 46778


Q ss_pred             eecCCCcceEEEEECC-CCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcC--CCCeEEEEecCCeEEEEeC
Q psy4391         106 TLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDGLCRIWDT  182 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~v~d~  182 (231)
                      .+.+|...|.+++|+| |.+.+++++-|++|++|.+....+..++.+|...|.++.+-+  |..+|++|+.|..+++||.
T Consensus       135 tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDy  214 (794)
T KOG0276|consen  135 TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDY  214 (794)
T ss_pred             EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeec
Confidence            8999999999999999 568999999999999999999888899999999999999986  4569999999999999999


Q ss_pred             CCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       183 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .+..+++++.. +...|+.+.|+|.=..+++|+.||+++||.+
T Consensus       215 Qtk~CV~TLeG-Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs  256 (794)
T KOG0276|consen  215 QTKSCVQTLEG-HTNNVSFVFFHPELPIIISGSEDGTVRIWNS  256 (794)
T ss_pred             chHHHHHHhhc-ccccceEEEecCCCcEEEEecCCccEEEecC
Confidence            99999988754 4567899999999999999999999999996

>KOG0643|consensus

Probab=99.97  E-value=5.1e-28  Score=170.39  Aligned_cols=205  Identities=24%  Similarity=0.372  Sum_probs=175.2

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC-----CCcE
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-----DKTL   93 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~g~i   93 (231)
                      .--+..||++.|.++..+.+.+++++|+.|.++++||+++++....+.. ..+|..+.|+++|++++...+     .+.|
T Consensus        44 rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v  122 (327)
T KOG0643|consen   44 RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFV  122 (327)
T ss_pred             eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEE
Confidence            3456789999999999999999999999999999999999999988875 457999999999998876654     3579


Q ss_pred             EEEeCC-------CceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc-eeeeccCCCCCeEEEEEcCCC
Q psy4391          94 KIWELS-------SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDG  165 (231)
Q Consensus        94 ~~~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~  165 (231)
                      .++|++       ..++...+..+.+.++.+.|+|-+..|++|..+|.|..||+++|+ .+.....|...|+.|+++||.
T Consensus       123 ~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~  202 (327)
T KOG0643|consen  123 SVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR  202 (327)
T ss_pred             EEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc
Confidence            999987       345677777778889999999999999999999999999999985 455567888999999999999


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeee------------------------------------------------------
Q psy4391         166 SLIVSSSYDGLCRIWDTASGQCLKTL------------------------------------------------------  191 (231)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~~~~~------------------------------------------------------  191 (231)
                      .++++++.|.+-++||..+.+.++++                                                      
T Consensus       203 T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr  282 (327)
T KOG0643|consen  203 TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR  282 (327)
T ss_pred             ceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence            99999999999999998775544332                                                      


Q ss_pred             ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         192 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       192 ~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      ...+-.||++++|+|+|+..++|+.||.|++.-
T Consensus       283 vkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  283 VKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             ccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence            112335789999999999999999999999874

>KOG0265|consensus

Probab=99.97  E-value=1.9e-28  Score=174.94  Aligned_cols=205  Identities=30%  Similarity=0.562  Sum_probs=175.7

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCC-CEEEEecCCCcEEEEeCCC
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~d~~~  100 (231)
                      .+++|.+.|..+.|.+|++.|++++.|.+++.||.++++..+..++|..-|..+.-+.-| .++.+++.|+++++||+++
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            456999999999999999999999999999999999999999999998878877633333 4567899999999999998


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEE
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~  180 (231)
                      .+.++.+.. .-+++++.|..++..+.+|+-|+.|++||++.+.....+.+|.++|+.+..+|+|.++.+-+.|.++++|
T Consensus       165 k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvw  243 (338)
T KOG0265|consen  165 KEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVW  243 (338)
T ss_pred             cchhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEE
Confidence            888777753 4568899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCC----ceeeeeecC-CC--CCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         181 DTASG----QCLKTLIDD-DN--PPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       181 d~~~~----~~~~~~~~~-~~--~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      |.+..    +++..+..+ +.  .....++|+|+++++.+|+.|..+.+||+..
T Consensus       244 d~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  244 DVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             EecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence            98753    334444322 11  1234578999999999999999999999744

>KOG0281|consensus

Probab=99.97  E-value=3.5e-30  Score=187.61  Aligned_cols=197  Identities=27%  Similarity=0.541  Sum_probs=171.9

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ..+.+.||+++|.|+.|.  .+.|++|+.|.+|++||..+++....+.+|...|..+.|+.  .++++++.|..+.+||+
T Consensus       229 c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm  304 (499)
T KOG0281|consen  229 CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDM  304 (499)
T ss_pred             HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEec
Confidence            335677999999999996  55899999999999999999999999999999999999974  58999999999999999


Q ss_pred             CCce---eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC
Q psy4391          99 SSGK---CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus        99 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                      ....   ..+.+.+|...|..+.|+  .+++++++.|.+|++|++.++..+..+.+|...|.|+.+  .++++++|+.|.
T Consensus       305 ~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDn  380 (499)
T KOG0281|consen  305 ASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN  380 (499)
T ss_pred             cCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCc
Confidence            8643   345567888888888775  459999999999999999999999999999999988876  589999999999


Q ss_pred             eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +|++||+..|.+++.+..+ ..-|.++.|+.  +.+++|+.||+|+|||..
T Consensus       381 tIRlwdi~~G~cLRvLeGH-EeLvRciRFd~--krIVSGaYDGkikvWdl~  428 (499)
T KOG0281|consen  381 TIRLWDIECGACLRVLEGH-EELVRCIRFDN--KRIVSGAYDGKIKVWDLQ  428 (499)
T ss_pred             eEEEEeccccHHHHHHhch-HHhhhheeecC--ceeeeccccceEEEEecc
Confidence            9999999999998877654 44677888864  679999999999999963

>KOG0316|consensus

Probab=99.97  E-value=2.2e-28  Score=169.54  Aligned_cols=204  Identities=25%  Similarity=0.449  Sum_probs=178.2

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      +..+..+|...|..++.+.|...+++|+.|..+.+||+.+++..+.+.+|.+.|..+.|..+...+++|+-|..+++||.
T Consensus        51 liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDC  130 (307)
T KOG0316|consen   51 LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDC  130 (307)
T ss_pred             eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEc
Confidence            44567799999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC--ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCe
Q psy4391          99 SS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (231)
Q Consensus        99 ~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  176 (231)
                      +.  .++++.+....+.|.++..+  +..|++|+.||+++.||++.|+......  ..||++++|++|++..++++.|++
T Consensus       131 RS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~st  206 (307)
T KOG0316|consen  131 RSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDST  206 (307)
T ss_pred             ccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccce
Confidence            75  46777787777778887765  5689999999999999999998655443  468999999999999999999999


Q ss_pred             EEEEeCCCCceeeeeecCCCCCe-EEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         177 CRIWDTASGQCLKTLIDDDNPPV-SFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       177 i~v~d~~~~~~~~~~~~~~~~~i-~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +++.|-.+++.++....+.+... ...+++.....+++|++||.|.+||..
T Consensus       207 lrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLv  257 (307)
T KOG0316|consen  207 LRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV  257 (307)
T ss_pred             eeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEec
Confidence            99999999998887765544332 235678888999999999999999963

>KOG0275|consensus

Probab=99.97  E-value=1.1e-29  Score=183.66  Aligned_cols=201  Identities=33%  Similarity=0.646  Sum_probs=172.8

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe--------cccccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------GHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      +.++.+.|..|+|||++|++|+.||.|.+|+..+++..+.++        -+..+|.++.|+.|.+++++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            445667899999999999999999999999998887654432        356789999999999999999999999999


Q ss_pred             eCCCceeeeeec-CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC
Q psy4391          97 ELSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus        97 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                      .+.++.+++.+. .|...++++.|+.|+..+++++.|.++++--+.+|++++.+.+|...|....|.+||..+++++.||
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg  370 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG  370 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence            999999998886 7888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeeeeecC----------------------------------------------CCCCeEEEEECCCCC
Q psy4391         176 LCRIWDTASGQCLKTLIDD----------------------------------------------DNPPVSFVKFSPNGK  209 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~----------------------------------------------~~~~i~~~~~s~~g~  209 (231)
                      ++++|+..+.+++.++...                                              .+....+.+.||.|.
T Consensus       371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGe  450 (508)
T KOG0275|consen  371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGE  450 (508)
T ss_pred             cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCc
Confidence            9999998876654332110                                              111223456789999


Q ss_pred             EEEEEeCCCeEEEEeC
Q psy4391         210 YILAATLDNTLKLWDS  225 (231)
Q Consensus       210 ~l~~~s~d~~v~vwd~  225 (231)
                      ++++.+.|+.+..|..
T Consensus       451 wiYcigED~vlYCF~~  466 (508)
T KOG0275|consen  451 WIYCIGEDGVLYCFSV  466 (508)
T ss_pred             EEEEEccCcEEEEEEe
Confidence            9999999988877764

>KOG0305|consensus

Probab=99.97  E-value=3.6e-28  Score=188.73  Aligned_cols=200  Identities=28%  Similarity=0.529  Sum_probs=173.8

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec-ccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      ...|+++.|+++|..|++|..+|.|.|||..+.+....+.+ |...|.+++|.  +..+.+|+.++.|..+|+...+...
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence            78899999999999999999999999999998888888888 88999999998  5678999999999999998766444


Q ss_pred             e-ecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcC-CCCeEEEEe--cCCeEEEEe
Q psy4391         106 T-LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSS--YDGLCRIWD  181 (231)
Q Consensus       106 ~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~v~d  181 (231)
                      . +.+|...|+.+.|++++.++|+|+.|+.+.+||.........+..|..+|.+++|+| ...+||+|+  .|++|++||
T Consensus       295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn  374 (484)
T KOG0305|consen  295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN  374 (484)
T ss_pred             hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence            4 778999999999999999999999999999999988888888999999999999999 556777754  689999999


Q ss_pred             CCCCceeeee------------------------------------------ecCCCCCeEEEEECCCCCEEEEEeCCCe
Q psy4391         182 TASGQCLKTL------------------------------------------IDDDNPPVSFVKFSPNGKYILAATLDNT  219 (231)
Q Consensus       182 ~~~~~~~~~~------------------------------------------~~~~~~~i~~~~~s~~g~~l~~~s~d~~  219 (231)
                      ..+++.+..+                                          ...|...|..++++|||..+++|+.|.+
T Consensus       375 ~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DET  454 (484)
T KOG0305|consen  375 TNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADET  454 (484)
T ss_pred             cCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCc
Confidence            8776543221                                          1234455788999999999999999999


Q ss_pred             EEEEeCCCC
Q psy4391         220 LKLWDSYPC  228 (231)
Q Consensus       220 v~vwd~~~~  228 (231)
                      +++|+.++.
T Consensus       455 lrfw~~f~~  463 (484)
T KOG0305|consen  455 LRFWNLFDE  463 (484)
T ss_pred             EEeccccCC
Confidence            999998763

>KOG0306|consensus

Probab=99.96  E-value=4.4e-28  Score=191.49  Aligned_cols=204  Identities=31%  Similarity=0.526  Sum_probs=181.7

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecC-----CCcEEEEEe-------cccccEEEEEECCCCCEEEEecC
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----DGKFEKTIS-------GHKLGISDVAWSSDSRLLVSGSD   89 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-----~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~   89 (231)
                      +.+.|.+.|.+++.+||++.+++|+.|.+|++|+..     .+...+.+.       .-...|.++.++|||++++++--
T Consensus       449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL  528 (888)
T KOG0306|consen  449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL  528 (888)
T ss_pred             hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec
Confidence            456899999999999999999999999999999853     122211111       12456889999999999999999


Q ss_pred             CCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEE
Q psy4391          90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus        90 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  169 (231)
                      |.++++|-+++-+....+.+|.-+|.++..+||+++++||+.|..|++|-++-|.+-+.+.+|.+.|.++.|.|+...+.
T Consensus       529 dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FF  608 (888)
T KOG0306|consen  529 DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFF  608 (888)
T ss_pred             cCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEE
Confidence            99999999999998889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +++.|+.++-||-...+.++.+.. +...+.+++.+|+|.++++++.|..|++|...
T Consensus       609 t~gKD~kvKqWDg~kFe~iq~L~~-H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t  664 (888)
T KOG0306|consen  609 TCGKDGKVKQWDGEKFEEIQKLDG-HHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT  664 (888)
T ss_pred             EecCcceEEeechhhhhhheeecc-chheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence            999999999999988888777654 44578999999999999999999999999853

>KOG0973|consensus

Probab=99.96  E-value=6.2e-28  Score=197.07  Aligned_cols=208  Identities=32%  Similarity=0.499  Sum_probs=178.6

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCC------------------CcEEEEEecccccEEEEEECCC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD------------------GKFEKTISGHKLGISDVAWSSD   80 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~   80 (231)
                      +..+...|.+.|.|+.|+|||++||+|+.|..|.||....                  .+....+.+|...|.+++|+|+
T Consensus        61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~  140 (942)
T KOG0973|consen   61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD  140 (942)
T ss_pred             hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence            4456678999999999999999999999999999998762                  1245567789999999999999


Q ss_pred             CCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce---------------
Q psy4391          81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---------------  145 (231)
Q Consensus        81 ~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------------  145 (231)
                      +.++++++.|+.|.+||..+.+.+..+++|.+.|..+.|+|-|+++|+-+.|++|++|.+.....               
T Consensus       141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T  220 (942)
T KOG0973|consen  141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT  220 (942)
T ss_pred             ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999998643111               


Q ss_pred             -------------------------------------eeeccCCCCCeEEEEEcCC-----CC------------eEEEE
Q psy4391         146 -------------------------------------LKTLPAHSDPVSAVHFNRD-----GS------------LIVSS  171 (231)
Q Consensus       146 -------------------------------------~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~  171 (231)
                                                           -..+.+|..++.+++|+|.     .+            .+|+|
T Consensus       221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg  300 (942)
T KOG0973|consen  221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG  300 (942)
T ss_pred             eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence                                                 1223467889999999872     11            57899


Q ss_pred             ecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ++|++|.||.....+.+.....-....|..++|+|||..|+++|.||.|.+..+.
T Consensus       301 SqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  301 SQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             cCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence            9999999999988777766666667789999999999999999999999998763

>KOG0277|consensus

Probab=99.96  E-value=8.4e-29  Score=173.19  Aligned_cols=205  Identities=28%  Similarity=0.486  Sum_probs=169.9

Q ss_pred             EeecccccceEEEEECCC-CCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCC-CCEEEEecCCCcEEEEeC
Q psy4391          21 FTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~~~d~   98 (231)
                      ..++.|...|.++.|++. ++.+++++.|++|++|+..-++.+..+.+|...|...+|+|. .+.+++++.|+.+++||+
T Consensus        98 ~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdv  177 (311)
T KOG0277|consen   98 HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDV  177 (311)
T ss_pred             hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEe
Confidence            445689999999999985 456778899999999999888889999999999999999994 678899999999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECC-CCCEEEEeecCCcEEEEECCCC-ceeeeccCCCCCeEEEEEcCCC-CeEEEEecCC
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDG  175 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg  175 (231)
                      +.......+..|...+.+|.|+. +.+.++||+.|+.|+.||+++- .++..+.+|.-+|+.+.|+|.. ..|++++.|-
T Consensus       178 r~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm  257 (311)
T KOG0277|consen  178 RSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDM  257 (311)
T ss_pred             cCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence            86444445888888999999987 5678999999999999999864 4567788999999999999964 5789999999


Q ss_pred             eEEEEeCCCCceeeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeC
Q psy4391         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~s~d~~v~vwd~  225 (231)
                      ++++||...+........++..=+..+.||+ ++.++|.++.|..+.||++
T Consensus       258 T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  258 TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             eEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            9999999865544333334433345567776 4568999999999999986

>KOG0292|consensus

Probab=99.96  E-value=1.6e-28  Score=197.16  Aligned_cols=201  Identities=29%  Similarity=0.573  Sum_probs=184.6

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      ...+|..++|+|...+++++--.|.|++||.+-+.....+..|.++|..+.|+|.+..+++|++|-.|++|+.++.+++.
T Consensus         8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf   87 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF   87 (1202)
T ss_pred             ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh
Confidence            35678899999999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             eecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCC
Q psy4391         106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG  185 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  185 (231)
                      ++.+|.+.|..+.|++.-..|++++.|.+|++|+.++++++..+.+|...|.|.+|+|....+++++-|.+|+|||+..-
T Consensus        88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL  167 (1202)
T KOG0292|consen   88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL  167 (1202)
T ss_pred             hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998532


Q ss_pred             c----------------------------eeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         186 Q----------------------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       186 ~----------------------------~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +                            .++.+...+...|+.++|+|.-..+++|+.|+.|++|...
T Consensus       168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn  236 (1202)
T KOG0292|consen  168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN  236 (1202)
T ss_pred             hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEec
Confidence            1                            1222344566678999999999999999999999999864

>KOG0277|consensus

Probab=99.96  E-value=6.4e-28  Score=168.80  Aligned_cols=200  Identities=25%  Similarity=0.484  Sum_probs=169.8

Q ss_pred             cccceEEEEECCCCC-EEEEEeCCCcEEEeecCC-CcEEEEEecccccEEEEEECCC-CCEEEEecCCCcEEEEeCCCce
Q psy4391          26 HTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSGK  102 (231)
Q Consensus        26 h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~~~d~~~~~  102 (231)
                      -...+..++|++..+ .+++++-||++++||... ......++.|...|.++.|.+- ++.+++++-|++|++|+..-++
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~  138 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN  138 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence            356788999999655 567788899999999632 3456677889999999999984 5567888999999999999999


Q ss_pred             eeeeecCCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcC-CCCeEEEEecCCeEEEE
Q psy4391         103 CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~v~  180 (231)
                      .++++.+|.+.|....|+|. .+++++++.|+.+++||++.......+.+|...+.++.|+. +...+++|+.|+.|+.|
T Consensus       139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW  218 (311)
T ss_pred             ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence            99999999999999999995 68999999999999999987655555889998999999986 56688999999999999


Q ss_pred             eCCCCceeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeC
Q psy4391         181 DTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDS  225 (231)
Q Consensus       181 d~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~s~d~~v~vwd~  225 (231)
                      |+++.+..-.....++..|..++|||.. ..|++++.|-+++|||.
T Consensus       219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~  264 (311)
T KOG0277|consen  219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDP  264 (311)
T ss_pred             ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEeccc
Confidence            9998765444446777889999999976 47888999999999996

>KOG1407|consensus

Probab=99.96  E-value=4.4e-28  Score=170.17  Aligned_cols=202  Identities=28%  Similarity=0.548  Sum_probs=169.5

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEE--EecccccEEEEEECC-CCCEEEEecCCCcEEEEe
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~d   97 (231)
                      ...++|...+.+++|+-+|..|++|+.|+++.+|+++..+....  ..+|...|..++|+| +...+++++.|..|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            55678999999999999999999999999999999986654443  357777899999987 456789999999999999


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc---------------------------------
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK---------------------------------  144 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------------------------------  144 (231)
                      ...+++...+....+.+ -+.|+|+|++++.++.|..|...|.++.+                                 
T Consensus        94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence            99999888776555544 46799999999999999999988876532                                 


Q ss_pred             --------eeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC
Q psy4391         145 --------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       145 --------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~  216 (231)
                              .+..+.+|...+.|+.|+|+|+++|+|+.|-.+.+||+...-+++.+.. ...+|..+.||.||++||++|.
T Consensus       173 ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-ldwpVRTlSFS~dg~~lASaSE  251 (313)
T KOG1407|consen  173 ILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-LDWPVRTLSFSHDGRMLASASE  251 (313)
T ss_pred             EEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-ccCceEEEEeccCcceeeccCc
Confidence                    1234567777788999999999999999999999999998777776654 4578999999999999999999


Q ss_pred             CCeEEEEe
Q psy4391         217 DNTLKLWD  224 (231)
Q Consensus       217 d~~v~vwd  224 (231)
                      |..|-|=+
T Consensus       252 Dh~IDIA~  259 (313)
T KOG1407|consen  252 DHFIDIAE  259 (313)
T ss_pred             cceEEeEe
Confidence            98886644

>KOG0282|consensus

Probab=99.96  E-value=1.8e-28  Score=184.89  Aligned_cols=204  Identities=25%  Similarity=0.457  Sum_probs=174.3

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCC-CEEEEecCCCcEEEEe
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWE   97 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~d   97 (231)
                      +..++.+|...|..++|+++|..+.+++.|+.+++||.++|+....+... ..+.++.|+|++ +.+++|+.|+.|+.||
T Consensus       250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wD  328 (503)
T KOG0282|consen  250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWD  328 (503)
T ss_pred             eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEe
Confidence            44567799999999999999999999999999999999999998888653 457889999998 7789999999999999


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceee------------------------------
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK------------------------------  147 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~------------------------------  147 (231)
                      +++++.++....|-+.+..+.|-++|+.+++.+.|+.+++|+.+.+..++                              
T Consensus       329 iRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~  408 (503)
T KOG0282|consen  329 IRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY  408 (503)
T ss_pred             ccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce
Confidence            99999999888889999999999999999999999999999987542211                              


Q ss_pred             ----------------eccCC--CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCC-
Q psy4391         148 ----------------TLPAH--SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-  208 (231)
Q Consensus       148 ----------------~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g-  208 (231)
                                      .+.+|  .+....+.|||||.+|++|..||.+.+||-.+-+.+..+..+ ..++..+.|+|.. 
T Consensus       409 i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~  487 (503)
T KOG0282|consen  409 IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEP  487 (503)
T ss_pred             EEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEecCCCc
Confidence                            11222  233456889999999999999999999999988877766554 5577889999976 


Q ss_pred             CEEEEEeCCCeEEEEe
Q psy4391         209 KYILAATLDNTLKLWD  224 (231)
Q Consensus       209 ~~l~~~s~d~~v~vwd  224 (231)
                      ..||+++.||.|++||
T Consensus       488 Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  488 SKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeEecccCceeEecC
Confidence            4789999999999997

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2e-26  Score=185.12  Aligned_cols=181  Identities=23%  Similarity=0.392  Sum_probs=149.2

Q ss_pred             EeCCCcEEEeecCCCcEEEEEecccccEEEEEECCC-CCEEEEecCCCcEEEEeCCCce--------eeeeecCCCcceE
Q psy4391          45 SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSGK--------CLKTLKGHSNYVF  115 (231)
Q Consensus        45 ~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~~~d~~~~~--------~~~~~~~~~~~v~  115 (231)
                      |+.++.+++|+.........+.+|...|.+++|+|+ +.+|++|+.|+.|++||+.++.        ++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            556788999998766677788899999999999996 7899999999999999997532        2345678888999


Q ss_pred             EEEECCCCCE-EEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecC
Q psy4391         116 CCNFNPQSNL-IVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD  194 (231)
Q Consensus       116 ~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  194 (231)
                      +++|+|++.. +++++.|+.|++||+++++.+..+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+..+..+
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            9999998875 5789999999999999988766664 5578999999999999999999999999999999887776544


Q ss_pred             CCCC----eEEEEECCCCCEEEEEeCCC----eEEEEeCC
Q psy4391         195 DNPP----VSFVKFSPNGKYILAATLDN----TLKLWDSY  226 (231)
Q Consensus       195 ~~~~----i~~~~~s~~g~~l~~~s~d~----~v~vwd~~  226 (231)
                      ....    +....|++++.+|++++.|+    .|+|||..
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence            4321    12234578999999988774    79999964

>KOG1446|consensus

Probab=99.96  E-value=3e-26  Score=164.80  Aligned_cols=203  Identities=28%  Similarity=0.476  Sum_probs=174.7

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC--CCcEEEEeCCCce
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD--DKTLKIWELSSGK  102 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~g~i~~~d~~~~~  102 (231)
                      .-...|.++.|+.+|+++++++.|..+++||..+++....+..++.++..++|......++.++.  |.+|+..++.+.+
T Consensus        12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk   91 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK   91 (311)
T ss_pred             cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence            34678999999999999999999999999999999999999988889999999877666666665  8899999999999


Q ss_pred             eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeC
Q psy4391         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (231)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (231)
                      .++.+.+|...|..++.+|-+..+++++.|++|++||++..++.-.+.....+  ..+|+|+|-++|++.....|++||+
T Consensus        92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~  169 (311)
T KOG1446|consen   92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDL  169 (311)
T ss_pred             eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEe
Confidence            99999999999999999999999999999999999999988876666554444  4689999999999988889999999


Q ss_pred             CCC--ceeeee--ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q psy4391         183 ASG--QCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCL  229 (231)
Q Consensus       183 ~~~--~~~~~~--~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~  229 (231)
                      +.-  .....+  ........+.+.|||||++++.++..+.+.+.|++...
T Consensus       170 Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~  220 (311)
T KOG1446|consen  170 RSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT  220 (311)
T ss_pred             cccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc
Confidence            864  222222  22445678899999999999999999999999987654

>KOG0264|consensus

Probab=99.96  E-value=3.6e-27  Score=176.51  Aligned_cols=210  Identities=29%  Similarity=0.450  Sum_probs=169.5

Q ss_pred             ceeEEeecccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCc-------EEEEEecccccEEEEEECCC-CCEEEEe
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSD-SRLLVSG   87 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~   87 (231)
                      .....+|.+|+..-.++.|++... .|++++.|+.|.+||+....       ....+.+|...|.+++|++. ...++++
T Consensus       167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv  246 (422)
T KOG0264|consen  167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV  246 (422)
T ss_pred             CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence            344456779998888999999766 78899999999999985322       34457789999999999985 4567899


Q ss_pred             cCCCcEEEEeCC--CceeeeeecCCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCc-eeeeccCCCCCeEEEEEcC
Q psy4391          88 SDDKTLKIWELS--SGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNR  163 (231)
Q Consensus        88 ~~~g~i~~~d~~--~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~  163 (231)
                      +.|+.+.|||++  +.++.+...+|...+.+++|+|. +.+||+|+.|++|++||+|+-+ .+..+..|...|..+.|+|
T Consensus       247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP  326 (422)
T KOG0264|consen  247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP  326 (422)
T ss_pred             cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCC
Confidence            999999999999  56667778889999999999995 5678999999999999999643 5677889999999999999


Q ss_pred             CC-CeEEEEecCCeEEEEeCCCCceee-------------eeecCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCC
Q psy4391         164 DG-SLIVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYI-LAATLDNTLKLWDSY  226 (231)
Q Consensus       164 ~~-~~l~~~~~dg~i~v~d~~~~~~~~-------------~~~~~~~~~i~~~~~s~~g~~l-~~~s~d~~v~vwd~~  226 (231)
                      .. ..||+++.|+.+.+||+..-...+             -+-..+...|..+.|+|+..++ ++.+.|+.+.||...
T Consensus       327 h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  327 HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            65 477888999999999986532221             1123456678889999998865 556779999999964

>KOG0319|consensus

Probab=99.96  E-value=1.5e-27  Score=188.05  Aligned_cols=204  Identities=32%  Similarity=0.530  Sum_probs=176.3

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc----EEEEEecccccEEEEEECCCC-CEEEEecCCCcEEEE
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIW   96 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~   96 (231)
                      .+.||+..|.++....+|.+|++|+.|.++++|.+.++.    ......+|...|.+++++..+ .++++++.|+++++|
T Consensus       360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W  439 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW  439 (775)
T ss_pred             EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence            567999999999977788999999999999999874332    334556888999999997654 578999999999999


Q ss_pred             eCCCcee-----ee----eecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCe
Q psy4391          97 ELSSGKC-----LK----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSL  167 (231)
Q Consensus        97 d~~~~~~-----~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  167 (231)
                      ++...+.     ..    ....|...|.+++++|+..+++||+.|.+.++|+++.......+.+|...+.++.|+|..+.
T Consensus       440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~  519 (775)
T KOG0319|consen  440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQL  519 (775)
T ss_pred             cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccce
Confidence            9976221     11    22367888999999999999999999999999999988889999999999999999999999


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +++++.|++|++|.+.+..+++++.. +...|....|-.+|+.|++++.||-+++|+..
T Consensus       520 laT~SgD~TvKIW~is~fSClkT~eG-H~~aVlra~F~~~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  520 LATCSGDKTVKIWSISTFSCLKTFEG-HTSAVLRASFIRNGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             eEeccCCceEEEEEeccceeeeeecC-ccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence            99999999999999999999998864 45567778899999999999999999999953

>KOG0293|consensus

Probab=99.96  E-value=6.4e-27  Score=173.78  Aligned_cols=204  Identities=26%  Similarity=0.453  Sum_probs=173.2

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc---EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      ...+..|+..|.-+.||++|++||+|+.|.+..+|.+....   ....+.+|..+|.-+.|+||.+++++|+.+..+.+|
T Consensus       217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW  296 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence            34567899999999999999999999999999999876443   356677899999999999999999999999999999


Q ss_pred             eCCCceeeeeecC-CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC-CCeEEEEEcCCCCeEEEEecC
Q psy4391          97 ELSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus        97 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      |..++...+.... +...+.+++|.|||..+++|+.|+.+..||+. |+.....+... ..|.+++.++||+++++.+.|
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d  375 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD  375 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence            9999988776653 34678899999999999999999999999997 44444444332 458899999999999999999


Q ss_pred             CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ..+++++.++......+  ....+++++..|.||+++++.-.+..+++||..
T Consensus       376 ~~i~l~~~e~~~dr~li--se~~~its~~iS~d~k~~LvnL~~qei~LWDl~  425 (519)
T KOG0293|consen  376 KKIRLYNREARVDRGLI--SEEQPITSFSISKDGKLALVNLQDQEIHLWDLE  425 (519)
T ss_pred             cceeeechhhhhhhccc--cccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence            99999998765544322  334679999999999999999999999999974

>KOG0313|consensus

Probab=99.96  E-value=1.1e-26  Score=170.60  Aligned_cols=199  Identities=33%  Similarity=0.581  Sum_probs=168.9

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCC-------------------------CcEEEEEecccccEEEEEECC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-------------------------GKFEKTISGHKLGISDVAWSS   79 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~   79 (231)
                      ||.+.|.++...++|.++++|+.|..+.||+...                         +.....+.+|..+|.++.|++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            9999999999999999999999999999999321                         012335668999999999998


Q ss_pred             CCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce---eeeccCCCCCe
Q psy4391          80 DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---LKTLPAHSDPV  156 (231)
Q Consensus        80 ~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~v  156 (231)
                       ...+++++.|++|+.||+.++.....+.+ ...+.++..+|..++|++|+.|..+++||.+++..   ...+.+|.+.|
T Consensus       271 -~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV  348 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV  348 (423)
T ss_pred             -CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh
Confidence             66789999999999999999988777765 45688999999999999999999999999998752   45677899999


Q ss_pred             EEEEEcCCCC-eEEEEecCCeEEEEeCCCCc-eeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         157 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       157 ~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .++.|+|... +|++++.|+++++||+++-+ .+..+.. +...|.++.|+. +.++++|+.|++|+|+..-|
T Consensus       349 ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~-h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  349 SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG-HNDKVLSVDWNE-GGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc-CCceEEEEeccC-CceEEeccCcceEEEecccc
Confidence            9999999665 57899999999999999877 6666554 456788888975 56899999999999998644

>KOG0640|consensus

Probab=99.95  E-value=9.8e-27  Score=167.37  Aligned_cols=214  Identities=21%  Similarity=0.456  Sum_probs=176.3

Q ss_pred             CCCccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEE--ecccccEEEEEECCCCCEEEEecC
Q psy4391          12 NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSD   89 (231)
Q Consensus        12 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~   89 (231)
                      ++...+++..++..|...|+++.|+|....|++|++|++|++||.......+-+  .....+|.++.|+|.|.++++|.+
T Consensus       157 ~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd  236 (430)
T KOG0640|consen  157 DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD  236 (430)
T ss_pred             CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC
Confidence            344557888999999999999999999999999999999999998654332222  223467999999999999999999


Q ss_pred             CCcEEEEeCCCceeeeee---cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc-CCC-CCeEEEEEcCC
Q psy4391          90 DKTLKIWELSSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHS-DPVSAVHFNRD  164 (231)
Q Consensus        90 ~g~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~-~~v~~~~~~~~  164 (231)
                      -..+++||+.+.++....   ..|.+.|+++.+++.+++.++++.||.|++||--+++++..+. +|. ..|.+..|..+
T Consensus       237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn  316 (430)
T KOG0640|consen  237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN  316 (430)
T ss_pred             CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC
Confidence            999999999998765443   2467889999999999999999999999999999999888774 454 35778889999


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeeeec------------------------------------------------CCC
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQCLKTLID------------------------------------------------DDN  196 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~------------------------------------------------~~~  196 (231)
                      ++++++.+.|..+++|.+.+++.+.+...                                                .+.
T Consensus       317 ~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn  396 (430)
T KOG0640|consen  317 GKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHN  396 (430)
T ss_pred             CeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCC
Confidence            99999999999999999998877655321                                                122


Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         197 PPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       197 ~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .++..+.-||.+.-+++|+.|-++++|-.
T Consensus       397 ~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  397 GAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             CCceEEEeCCCCCceeeecccceeeeeee
Confidence            33555666888888999999999999964

>KOG0294|consensus

Probab=99.95  E-value=4.1e-26  Score=164.15  Aligned_cols=208  Identities=26%  Similarity=0.431  Sum_probs=167.5

Q ss_pred             CccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCC--EEEEecCCC
Q psy4391          14 KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR--LLVSGSDDK   91 (231)
Q Consensus        14 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~g   91 (231)
                      ++.+...|....|.++|++++.+  +.++|+|+.|.+|+|||.........+..|.+.++++.|.+.-.  .|++|+.||
T Consensus        30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG  107 (362)
T KOG0294|consen   30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG  107 (362)
T ss_pred             ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence            33344456778999999999996  89999999999999999988888888888999999999998654  899999999


Q ss_pred             cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC-------------------
Q psy4391          92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-------------------  152 (231)
Q Consensus        92 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------------------  152 (231)
                      .|.+|+......+..++.|...|+.++.+|.+++-++.+.|+.++.||+-.|+.-......                   
T Consensus       108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG  187 (362)
T ss_pred             cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe
Confidence            9999999999999999999999999999999999999999999999999766532111100                   


Q ss_pred             ------------------CCC--eEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEE--CCCCCE
Q psy4391         153 ------------------SDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKY  210 (231)
Q Consensus       153 ------------------~~~--v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~--s~~g~~  210 (231)
                                        ..+  +.++.|. ++..+++|..|+.|.+||.........+. .+...|..+.+  .|++.+
T Consensus       188 ~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-AH~~RVK~i~~~~~~~~~~  265 (362)
T KOG0294|consen  188 RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-AHENRVKDIASYTNPEHEY  265 (362)
T ss_pred             ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-cchhheeeeEEEecCCceE
Confidence                              011  2333333 45677888888889999988766555544 44456666663  678899


Q ss_pred             EEEEeCCCeEEEEeC
Q psy4391         211 ILAATLDNTLKLWDS  225 (231)
Q Consensus       211 l~~~s~d~~v~vwd~  225 (231)
                      |++++.||.|+|||.
T Consensus       266 lvTaSSDG~I~vWd~  280 (362)
T KOG0294|consen  266 LVTASSDGFIKVWDI  280 (362)
T ss_pred             EEEeccCceEEEEEc
Confidence            999999999999995

>KOG1407|consensus

Probab=99.95  E-value=3.2e-26  Score=160.86  Aligned_cols=204  Identities=25%  Similarity=0.476  Sum_probs=168.8

Q ss_pred             eeEEeecccccceEEEEECCC-CCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      ..+....+|++.|-.++|+|. ..++++++.|..|++||...++....+...... .-+.|+|+|+++++++.|..|...
T Consensus        55 ~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~i  133 (313)
T KOG1407|consen   55 RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFI  133 (313)
T ss_pred             hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEE
Confidence            344456789999999999985 558899999999999999998888777654333 457899999999999988888777


Q ss_pred             eCCCce-----------------------------------------eeeeecCCCcceEEEEECCCCCEEEEeecCCcE
Q psy4391          97 ELSSGK-----------------------------------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV  135 (231)
Q Consensus        97 d~~~~~-----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  135 (231)
                      |.++.+                                         ++..++.|.....++.|+|+|+++|+|+.|..+
T Consensus       134 d~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlv  213 (313)
T KOG1407|consen  134 DARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALV  213 (313)
T ss_pred             EecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeecccccee
Confidence            754322                                         233445677777899999999999999999999


Q ss_pred             EEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe
Q psy4391         136 RIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       136 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                      .+||++.--+++.+..+.-+|+.+.|+.||++||+++.|..|-|-+.++|..+.++.  ...+...++|+|...+||.++
T Consensus       214 SLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~  291 (313)
T KOG1407|consen  214 SLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYAC  291 (313)
T ss_pred             eccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEe
Confidence            999999888888898999999999999999999999999999999999998776653  456678899999999998877


Q ss_pred             CC---------CeEEEEe
Q psy4391         216 LD---------NTLKLWD  224 (231)
Q Consensus       216 ~d---------~~v~vwd  224 (231)
                      .|         |.|++|-
T Consensus       292 ddk~~d~~reag~vKiFG  309 (313)
T KOG1407|consen  292 DDKDGDSNREAGTVKIFG  309 (313)
T ss_pred             cCCCCccccccceeEEec
Confidence            54         5777774

>KOG0274|consensus

Probab=99.95  E-value=3.4e-26  Score=183.21  Aligned_cols=200  Identities=34%  Similarity=0.685  Sum_probs=175.1

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      +...+.||.+.|.++++..-+.++++|+.|.++++||..++.....+.+|...+..+...  ...+++|+.|.+|++|++
T Consensus       241 i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v  318 (537)
T KOG0274|consen  241 ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDV  318 (537)
T ss_pred             EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEec
Confidence            333488999999999998878899999999999999999999999999999888877654  356788899999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      .++..+..+.+|.++|.++..+  +.++++|+.|+.|++||..+++++..+.+|.+.|+++.+.+. ..+++|+.|+.|+
T Consensus       319 ~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~Ik  395 (537)
T KOG0274|consen  319 TNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIK  395 (537)
T ss_pred             cCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceE
Confidence            9999999999999999999887  789999999999999999999999999999999999988765 8899999999999


Q ss_pred             EEeCCCC-ceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         179 IWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       179 v~d~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +||+++. +++..+..+ ...+..  ....+++|++++.|+.|++||..
T Consensus       396 vWdl~~~~~c~~tl~~h-~~~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~  441 (537)
T KOG0274|consen  396 VWDLRTKRKCIHTLQGH-TSLVSS--LLLRDNFLVSSSADGTIKLWDAE  441 (537)
T ss_pred             eecCCchhhhhhhhcCC-cccccc--cccccceeEeccccccEEEeecc
Confidence            9999999 777665443 333433  34557899999999999999963

>KOG0641|consensus

Probab=99.95  E-value=3.5e-25  Score=153.18  Aligned_cols=204  Identities=25%  Similarity=0.443  Sum_probs=158.8

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc-----EEEEEecccccEEEEEEC-------------------
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWS-------------------   78 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-----~~~~~~~~~~~v~~~~~~-------------------   78 (231)
                      -+.|.++|.|.+|+|+|++|++|+.|..|++.......     ...++.-|.+.|.+++|.                   
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            34678999999999999999999999999885432110     011222233333333331                   


Q ss_pred             ---------------------------CCCCEEEEecCCCcEEEEeCCCceeeeeecC-------CCcceEEEEECCCCC
Q psy4391          79 ---------------------------SDSRLLVSGSDDKTLKIWELSSGKCLKTLKG-------HSNYVFCCNFNPQSN  124 (231)
Q Consensus        79 ---------------------------~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~  124 (231)
                                                 =++-++++|++|.+|++||++-..++..+..       ..+.|.++++.|.|+
T Consensus       165 iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr  244 (350)
T KOG0641|consen  165 IYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR  244 (350)
T ss_pred             EEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc
Confidence                                       1345677888999999999987777666532       236688999999999


Q ss_pred             EEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCC---CceeeeeecCCCCCeEE
Q psy4391         125 LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNPPVSF  201 (231)
Q Consensus       125 ~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~~i~~  201 (231)
                      ++++|-.|....+||++.++.++.+..|...|+++.|+|...++++++.|..|++-|+..   .+....+..++...+..
T Consensus       245 ll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~  324 (350)
T KOG0641|consen  245 LLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQ  324 (350)
T ss_pred             eeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEE
Confidence            999999999999999999999999999999999999999999999999999999999864   22222334455666777


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         202 VKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       202 ~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +.|+|..--+++.+.|.++.+|-..
T Consensus       325 ~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  325 CRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEecCccceeeeccCcceEEEeccC
Confidence            8999999889999999999999654

>KOG0289|consensus

Probab=99.95  E-value=2.4e-26  Score=171.62  Aligned_cols=198  Identities=22%  Similarity=0.417  Sum_probs=180.0

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeee
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      ...|.++...+....+.+|+.|..+.++|....+....+.+|...|..+.++|+...+++++.|..|++|..........
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~  298 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS  298 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence            35788999988878999999999999999999988999999999999999999999999999999999999988777777


Q ss_pred             ecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC--CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCC
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH--SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (231)
                      ...|.+.|+.+..+|.|.++++++.|+.+.+.|++++..+......  .-.+++.+|+|||..+.+|..||.+++||+.+
T Consensus       299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks  378 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS  378 (506)
T ss_pred             cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence            8889999999999999999999999999999999999887765442  23578999999999999999999999999999


Q ss_pred             CceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       185 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ......+.. +..+|..++|+.+|-||++++.|+.|++||.
T Consensus       379 ~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDL  418 (506)
T KOG0289|consen  379 QTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDL  418 (506)
T ss_pred             ccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence            887766654 7789999999999999999999999999995

>KOG0269|consensus

Probab=99.95  E-value=1.8e-27  Score=188.39  Aligned_cols=203  Identities=25%  Similarity=0.516  Sum_probs=169.2

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCcEEEeecCC---CcEEEEEecccccEEEEEECCC-CCEEEEecCCCcEEEEeCCCcee
Q psy4391          29 AVSSVKFSP-NGEWLASSSADKLIKIWGAYD---GKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        29 ~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      .+..++|.. +.++||+++.+|.|.+||+..   .+....+..|...+..+.|++. -.+|++|++||.|+.||++..+.
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S  168 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS  168 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence            456688875 566899999999999999865   3445567889999999999985 45789999999999999998888


Q ss_pred             eeeecCCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCC-ceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         104 LKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      ...+.+..+.+.++.|+|. +..++++...|.+.+||++.. ++...+.+|.++|.++.|+|++.+||+|+.|+.|+|||
T Consensus       169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            8888888889999999984 688999999999999999865 45677889999999999999999999999999999999


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCCEE-EEEeC--CCeEEEEeC-CCCCCC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYI-LAATL--DNTLKLWDS-YPCLPK  231 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~s~--d~~v~vwd~-~~~~~~  231 (231)
                      ..+++...........++..++|-|..++. |+++.  |-.|+|||. -|=+|+
T Consensus       249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~  302 (839)
T KOG0269|consen  249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY  302 (839)
T ss_pred             ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc
Confidence            987765554444556789999999987754 55543  779999994 565553

>KOG2096|consensus

Probab=99.95  E-value=6.8e-26  Score=163.54  Aligned_cols=204  Identities=28%  Similarity=0.512  Sum_probs=154.9

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcE------------------------------------EEEE
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF------------------------------------EKTI   65 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~------------------------------------~~~~   65 (231)
                      .|++|.+.|++++|+.||+.|++++.|+.|++|+..+...                                    ...+
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            4779999999999999999999999999999998754210                                    0000


Q ss_pred             e-----------------------cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCC
Q psy4391          66 S-----------------------GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ  122 (231)
Q Consensus        66 ~-----------------------~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~  122 (231)
                      .                       .|...+.++.....+.+|.+++.|..|.+|+++ |+.+..+......-..++.+|+
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~  239 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD  239 (420)
T ss_pred             EeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCC
Confidence            0                       011223344444566788999999999999998 7777777766666677899999


Q ss_pred             CCEEEEeecCCcEEEEECCC---C-----ceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCC---------
Q psy4391         123 SNLIVSGSFDESVRIWDVRT---G-----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------  185 (231)
Q Consensus       123 ~~~l~~~~~d~~i~v~d~~~---~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---------  185 (231)
                      |+++++++.--.|++|++--   |     ..+..+.+|...|..++|+|+.+.+++.+.||.+++||..-.         
T Consensus       240 GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~  319 (420)
T KOG2096|consen  240 GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKI  319 (420)
T ss_pred             CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchH
Confidence            99999999999999998632   2     124567889999999999999999999999999999986321         


Q ss_pred             -------------cee-------------------ee-----------eecCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q psy4391         186 -------------QCL-------------------KT-----------LIDDDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (231)
Q Consensus       186 -------------~~~-------------------~~-----------~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~v  222 (231)
                                   +.+                   +.           +...+...|.+++|+++|+++++++ |..+++
T Consensus       320 Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv  398 (420)
T KOG2096|consen  320 LKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRV  398 (420)
T ss_pred             hhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeee
Confidence                         000                   00           0111334588999999999999987 889999


Q ss_pred             EeCCC
Q psy4391         223 WDSYP  227 (231)
Q Consensus       223 wd~~~  227 (231)
                      +...|
T Consensus       399 ~~ntp  403 (420)
T KOG2096|consen  399 IRNTP  403 (420)
T ss_pred             ecCCC
Confidence            87554

>KOG0647|consensus

Probab=99.95  E-value=5.3e-26  Score=162.68  Aligned_cols=199  Identities=28%  Similarity=0.455  Sum_probs=154.8

Q ss_pred             cccceEEEEECCC-CCEEEEEeCCCcEEEeecCCC-cEE-EEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce
Q psy4391          26 HTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDG-KFE-KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (231)
Q Consensus        26 h~~~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~  102 (231)
                      -.+.|.+++|||. ..++++++.||+||+|+++.. ... +....+..+|.+++|+.||..+++++.|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            3578999999994 446678999999999998763 322 3345678899999999999999999999999999999985


Q ss_pred             eeeeecCCCcceEEEEECCCCC--EEEEeecCCcEEEEECCCCceeeeccC-----------------------------
Q psy4391         103 CLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVRTGKCLKTLPA-----------------------------  151 (231)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~-----------------------------  151 (231)
                       +..+..|..++..+.|-+...  .|+||+.|.+|++||++....+..+..                             
T Consensus       106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~  184 (347)
T KOG0647|consen  106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE  184 (347)
T ss_pred             -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence             556778999999999977655  899999999999999997655433211                             


Q ss_pred             --------CC----CCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce--eeeeecC--------CCCCeEEEEECCCCC
Q psy4391         152 --------HS----DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC--LKTLIDD--------DNPPVSFVKFSPNGK  209 (231)
Q Consensus       152 --------~~----~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~--------~~~~i~~~~~s~~g~  209 (231)
                              +.    -.+++++..+|.+..+.|+-.|.+.+..+..+..  -..+.-+        .-..|++++|+|...
T Consensus       185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg  264 (347)
T KOG0647|consen  185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG  264 (347)
T ss_pred             CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence                    11    1356788888888888899999888887765421  1111111        134578899999999


Q ss_pred             EEEEEeCCCeEEEEeC
Q psy4391         210 YILAATLDNTLKLWDS  225 (231)
Q Consensus       210 ~l~~~s~d~~v~vwd~  225 (231)
                      .|++++.||++.+||-
T Consensus       265 tlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  265 TLVTAGSDGTFSFWDK  280 (347)
T ss_pred             eEEEecCCceEEEecc
Confidence            9999999999999995

>KOG0646|consensus

Probab=99.95  E-value=1.3e-25  Score=168.83  Aligned_cols=200  Identities=19%  Similarity=0.342  Sum_probs=171.1

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC-------
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS-------   99 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~-------   99 (231)
                      .+.|.+++-+|+|.+++.|+..|.+++|.+.+|.....+..|--.|+++.|+.||.+|++++.||.|.+|.+.       
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            4679999999999999999999999999999999998899999999999999999999999999999999863       


Q ss_pred             --CceeeeeecCCCcceEEEEECCC--CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC
Q psy4391         100 --SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus       100 --~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                        +-++.+.+..|.-.|+++...+.  ...+++++.|.++++||+..+..+..+.. ..++.+++.+|-++.+++|+.+|
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G  239 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEG  239 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcc
Confidence              23466778889889999887765  47899999999999999999988777654 56899999999999999999999


Q ss_pred             eEEEEeCCCCc----------------eeeeeecCC-CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         176 LCRIWDTASGQ----------------CLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       176 ~i~v~d~~~~~----------------~~~~~~~~~-~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .|.+.++....                ....+..+. ..+|++++++-||..|++|+.||.|+|||.+.
T Consensus       240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence            99988764322                112222222 25899999999999999999999999999754

>KOG0772|consensus

Probab=99.95  E-value=6.6e-26  Score=172.65  Aligned_cols=211  Identities=27%  Similarity=0.463  Sum_probs=165.0

Q ss_pred             ccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc----EEEEE-ecccccEEEEEECCCCCEEEEecC
Q psy4391          15 PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTI-SGHKLGISDVAWSSDSRLLVSGSD   89 (231)
Q Consensus        15 ~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~----~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~   89 (231)
                      +.+..+..+++|+..|+++++.|.|-++++|+.|..|++||.....    ..+.+ ......+.++.|++.|..|++.+.
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg  234 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG  234 (641)
T ss_pred             CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence            3445667788999999999999999999999999999999985432    22222 234456899999999999999999


Q ss_pred             CCcEEEEeCCCceeeee------------ecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCcee-eec---c--
Q psy4391          90 DKTLKIWELSSGKCLKT------------LKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCL-KTL---P--  150 (231)
Q Consensus        90 ~g~i~~~d~~~~~~~~~------------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~-~~~---~--  150 (231)
                      ....+++|-+..+.+..            .++|...+++-+|+|.. ..+++++.||++++||++..+.. ..+   .  
T Consensus       235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~  314 (641)
T KOG0772|consen  235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG  314 (641)
T ss_pred             CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence            99999999775443322            34677888999999975 57889999999999999865432 122   1  


Q ss_pred             CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce--eeeeecCCC--CCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         151 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC--LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       151 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~--~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ...-+++..+|+|+++.+|+|+.||.|.+|+......  ...+...|.  ..|+++.||+||++|++=+.|+.+++||.
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL  393 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL  393 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence            1233678899999999999999999999999854332  222233333  47999999999999999999999999995

>KOG1332|consensus

Probab=99.95  E-value=8.9e-26  Score=157.30  Aligned_cols=207  Identities=29%  Similarity=0.431  Sum_probs=169.1

Q ss_pred             eeEEeecccccceEEEEECC--CCCEEEEEeCCCcEEEeecCCCcEEE--EEecccccEEEEEECCC--CCEEEEecCCC
Q psy4391          18 VLKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD--SRLLVSGSDDK   91 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~--~~~l~~~~~~g   91 (231)
                      .+..+|.||.++|..++|..  -|.+||+++.||.|.||..+.++..+  ....|...|.+++|.|.  |-.|++++.||
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG  126 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG  126 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence            45678899999999999976  89999999999999999988775433  45678899999999986  45789999999


Q ss_pred             cEEEEeCCCc---eeeeeecCCCcceEEEEECCC---C-----------CEEEEeecCCcEEEEECCCCce--eeeccCC
Q psy4391          92 TLKIWELSSG---KCLKTLKGHSNYVFCCNFNPQ---S-----------NLIVSGSFDESVRIWDVRTGKC--LKTLPAH  152 (231)
Q Consensus        92 ~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~  152 (231)
                      .|.+.+.+..   ...+....|.-.+.+++|.|.   |           ..|++|+.|..|++|+...++-  -..+..|
T Consensus       127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H  206 (299)
T KOG1332|consen  127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH  206 (299)
T ss_pred             cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc
Confidence            9999988754   233455677777889999885   3           4699999999999999987642  3447899


Q ss_pred             CCCeEEEEEcCCC----CeEEEEecCCeEEEEeCCC--CceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         153 SDPVSAVHFNRDG----SLIVSSSYDGLCRIWDTAS--GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       153 ~~~v~~~~~~~~~----~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      .+.|+.++|.|.-    .++|++++||.+.||..+.  +....++......++..+.||..|..|++++.|+.|.+|.
T Consensus       207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence            9999999999964    4799999999999996652  2223344444556788999999999999999999999996

>KOG0293|consensus

Probab=99.95  E-value=7.4e-26  Score=168.19  Aligned_cols=212  Identities=20%  Similarity=0.424  Sum_probs=172.8

Q ss_pred             ceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe-cccccEEEEEECCCCCEEEEecCCCcEEE
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~   95 (231)
                      ..+++++-+|..+|.-+.||||.+++++|+.+..+.+||+.++.....+. ++...+.+++|.|||..+++|+.|+.+..
T Consensus       259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~  338 (519)
T KOG0293|consen  259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIM  338 (519)
T ss_pred             eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEE
Confidence            55678889999999999999999999999999999999999988766654 33567899999999999999999999999


Q ss_pred             EeCCCceeeeeecCC-CcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC
Q psy4391          96 WELSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus        96 ~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      ||++.. ....+++. ...+.+++..+||+.+++.+.|..+++++.++......+. ...++++.+++.|++++++.-.+
T Consensus       339 wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~  416 (519)
T KOG0293|consen  339 WDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQD  416 (519)
T ss_pred             ecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEccc
Confidence            999753 33344432 2558899999999999999999999999988766544443 35689999999999999999999


Q ss_pred             CeEEEEeCCCCceeeeeecCCCCC--eEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy4391         175 GLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~--i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~~  230 (231)
                      ..+++||++..+.+.....+....  |.++----+..++++||.|++|.||+....+|
T Consensus       417 qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl  474 (519)
T KOG0293|consen  417 QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL  474 (519)
T ss_pred             CeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce
Confidence            999999999887777666544332  33332234558999999999999999755443

>KOG0306|consensus

Probab=99.95  E-value=3.3e-25  Score=175.37  Aligned_cols=209  Identities=26%  Similarity=0.450  Sum_probs=179.0

Q ss_pred             CCccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCc
Q psy4391          13 PKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKT   92 (231)
Q Consensus        13 ~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~   92 (231)
                      |++.-.-.+++.||...|.+++++.+...+++| ..+.+.+|+..+.+..+.+...  -+.+..|.|.+++++.|..+|.
T Consensus       359 p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Ge  435 (888)
T KOG0306|consen  359 PEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGE  435 (888)
T ss_pred             ccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCc
Confidence            566666667888999999999999988877775 4789999999999999888754  6778899999999999999999


Q ss_pred             EEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCC-----Cceeeec-------cCCCCCeEEEE
Q psy4391          93 LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-----GKCLKTL-------PAHSDPVSAVH  160 (231)
Q Consensus        93 i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-----~~~~~~~-------~~~~~~v~~~~  160 (231)
                      +.+||+.....+-.+++|.+.+..++.+||+..+++|+.|.+|++||..-     +..-+.+       -.-+..|.|+.
T Consensus       436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~  515 (888)
T KOG0306|consen  436 LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS  515 (888)
T ss_pred             eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence            99999999888888889999999999999999999999999999999742     1111111       11246789999


Q ss_pred             EcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         161 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       161 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +|||+++|+++--|.++++|-+.+.+..-.+ ..+.-||.++..|||++.+++||.|..|+||-.
T Consensus       516 ~Spdgk~LaVsLLdnTVkVyflDtlKFflsL-YGHkLPV~smDIS~DSklivTgSADKnVKiWGL  579 (888)
T KOG0306|consen  516 VSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL-YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL  579 (888)
T ss_pred             EcCCCcEEEEEeccCeEEEEEecceeeeeee-cccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence            9999999999999999999999887755554 466788999999999999999999999999974

>KOG0288|consensus

Probab=99.95  E-value=1.5e-26  Score=171.52  Aligned_cols=205  Identities=27%  Similarity=0.502  Sum_probs=174.8

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      +.-+|.|..+.|+++.|.++++.+++++.|+.+++|++...+....+.+|...|+++.|......+++++.|.+|++||+
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl  290 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL  290 (459)
T ss_pred             hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence            45567778889999999999999999999999999999999999999999999999999877666999999999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      ....+.+.+-. .+...++..+  ...+++|..|+.|++||.+++........+. .|+++..++++..+.+++.|..+.
T Consensus       291 ~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~  366 (459)
T KOG0288|consen  291 QKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLK  366 (459)
T ss_pred             hhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCcee
Confidence            98777666542 2334455554  5578889999999999999999888887754 999999999999999999999999


Q ss_pred             EEeCCCCceeeeeecC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         179 IWDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~---~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ++|+++.+....+...   ....++.+.|||++.|+++|+.||.|.||+.+.
T Consensus       367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~t  418 (459)
T KOG0288|consen  367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFT  418 (459)
T ss_pred             eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccC
Confidence            9999998876655432   233467789999999999999999999999754

>KOG0267|consensus

Probab=99.95  E-value=1.3e-27  Score=188.07  Aligned_cols=196  Identities=30%  Similarity=0.547  Sum_probs=179.8

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      .+.+|...|.++.|+++..+|++|..+|+|++||+++.+..+.+.+|...+..+.|+|-+.+.+.++.|+.+.+||.+..
T Consensus        65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~  144 (825)
T KOG0267|consen   65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK  144 (825)
T ss_pred             eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence            46799999999999999999999999999999999999988999999999999999999999999999999999999988


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      .+.+..++|...+..+.|+|+|++++.++.|..+++||+..|+.+..+..|++.+..+.|+|..-+++.|+.|+++++||
T Consensus       145 Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~d  224 (825)
T KOG0267|consen  145 GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWD  224 (825)
T ss_pred             CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeec
Confidence            88899999888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN  218 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~  218 (231)
                      +++.+.+..... ....|.+.+|+|+|+.+++|....
T Consensus       225 letfe~I~s~~~-~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  225 LETFEVISSGKP-ETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             cceeEEeeccCC-ccCCceeeeecCCceeeecCchhh
Confidence            998776554432 345688899999999988887553

>KOG1446|consensus

Probab=99.95  E-value=1.3e-24  Score=156.38  Aligned_cols=200  Identities=21%  Similarity=0.344  Sum_probs=164.0

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      .+.||...|.+++.+|-++.+++++.|++|++||++..+.+..+.....+  .++|+|+|-.+|++.....|++||++..
T Consensus        95 YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen   95 YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEeccc
Confidence            46799999999999999999999999999999999877776666543333  3689999999999988889999999853


Q ss_pred             --eeeeeec---CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCe---EEEEEcCCCCeEEEEec
Q psy4391         102 --KCLKTLK---GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPV---SAVHFNRDGSLIVSSSY  173 (231)
Q Consensus       102 --~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~  173 (231)
                        .+...+.   ........+.|+|+|+.|+.++..+.+++.|.-.|.....+..+...-   ....|+||++++++|+.
T Consensus       173 dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  173 DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD  252 (311)
T ss_pred             CCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence              3333333   234667889999999999999999999999999998877776554322   45689999999999999


Q ss_pred             CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ||.|.+|++++++.+..+......++..+.|+|.-..  ..+.+..+.+|=+
T Consensus       253 dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~m--f~sa~s~l~fw~p  302 (311)
T KOG1446|consen  253 DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAM--FVSASSNLVFWLP  302 (311)
T ss_pred             CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceee--eeecCceEEEEec
Confidence            9999999999999888887767778889999996544  4455678888864

>KOG0268|consensus

Probab=99.95  E-value=1.2e-26  Score=169.75  Aligned_cols=203  Identities=27%  Similarity=0.434  Sum_probs=162.4

Q ss_pred             EeecccccceEEEEECCCC-CEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      ..|.+|...|.+++=+|.. ..+++|+.||.|++||+........+..|.+.|..+++..  ..++++++|.+|+.|-++
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence            4678999999999999977 6889999999999999999889999999999999999886  567788888888888632


Q ss_pred             C--------------------------------------ceeeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEEC
Q psy4391         100 S--------------------------------------GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDV  140 (231)
Q Consensus       100 ~--------------------------------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~  140 (231)
                      .                                      ..+++.+....+.+.++.|+|.. .+|++++.|+.|.+||+
T Consensus       138 ~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~  217 (433)
T KOG0268|consen  138 GPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL  217 (433)
T ss_pred             CCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence            1                                      11223333344557778888864 56777779999999999


Q ss_pred             CCCceeee------------------------------------------ccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         141 RTGKCLKT------------------------------------------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       141 ~~~~~~~~------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      +.+.++..                                          ...|..+|.++.|+|.|+-+++|+.|.+|+
T Consensus       218 R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR  297 (433)
T KOG0268|consen  218 RQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR  297 (433)
T ss_pred             ccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEE
Confidence            87765432                                          134556789999999999999999999999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +|....+..........-..|.++.||.|.+|+++||.|+.|++|..
T Consensus       298 If~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  298 IFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             EeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence            99988776543333333456788999999999999999999999985

>KOG0310|consensus

Probab=99.94  E-value=8.1e-25  Score=165.39  Aligned_cols=199  Identities=25%  Similarity=0.403  Sum_probs=169.8

Q ss_pred             eecccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCC-EEEEecCCCcEEEEeCC
Q psy4391          22 TLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELS   99 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~d~~   99 (231)
                      .+.+|+.+|..+.|+|++. .+++|+.|+.+++||+.+...+..+.+|..-|.+.+|+|... .+++|+-||.|++||++
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR  184 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR  184 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence            3568999999999999666 667788888999999988887678899999999999999655 67899999999999998


Q ss_pred             Cc-eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCC-ceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeE
Q psy4391         100 SG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (231)
Q Consensus       100 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  177 (231)
                      .. ..+..+. |..+|..+.+-|.|.+|++++. ..+++||+-+| +.+..+..|...|+|+++..++..|++++-|+.+
T Consensus       185 ~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~V  262 (487)
T KOG0310|consen  185 SLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHV  262 (487)
T ss_pred             cCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccce
Confidence            76 5555554 7788999999999999998875 46999999854 5555666699999999999999999999999999


Q ss_pred             EEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      ++||+.+.+.+..+.  ...+|.+++.+|+++.+++|-.||.+.+-+
T Consensus       263 KVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnGlv~~rr  307 (487)
T KOG0310|consen  263 KVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNGLVSIRR  307 (487)
T ss_pred             EEEEccceEEEEeee--cccceeeEEecCCCceEEEecccceeeeeh
Confidence            999988888777664  456899999999999999999999887763

>KOG0275|consensus

Probab=99.94  E-value=5.6e-27  Score=169.80  Aligned_cols=198  Identities=31%  Similarity=0.503  Sum_probs=173.7

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe-cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      |...|.|+.|+.|.+.+|+|+.||.|++|.++++.+.+.+. .|..+|+++.|+.|+..+++++.|.++++--++.++++
T Consensus       262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L  341 (508)
T KOG0275|consen  262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL  341 (508)
T ss_pred             cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH
Confidence            56789999999999999999999999999999999988886 78889999999999999999999999999999999999


Q ss_pred             eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccC---------------------------------
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA---------------------------------  151 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---------------------------------  151 (231)
                      +.+++|.+.+....|.++|..+++++.||+|++|+..+..++..+..                                 
T Consensus       342 KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn  421 (508)
T KOG0275|consen  342 KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN  421 (508)
T ss_pred             HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence            99999999999999999999999999999999999987655433211                                 


Q ss_pred             --------------CCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q psy4391         152 --------------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (231)
Q Consensus       152 --------------~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d  217 (231)
                                    ..+...+...+|.|.++++.+.|+.++.|...+|+....+..+... +..++-+|....+|+-+.|
T Consensus       422 ~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd-vIGl~HHPHqNllAsYsED  500 (508)
T KOG0275|consen  422 MQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD-VIGLTHHPHQNLLASYSED  500 (508)
T ss_pred             ccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc-ccccccCcccchhhhhccc
Confidence                          0122334567899999999999999999999999887776655544 4568889999999999999


Q ss_pred             CeEEEEe
Q psy4391         218 NTLKLWD  224 (231)
Q Consensus       218 ~~v~vwd  224 (231)
                      |.+++|.
T Consensus       501 gllKLWk  507 (508)
T KOG0275|consen  501 GLLKLWK  507 (508)
T ss_pred             chhhhcC
Confidence            9999995

>KOG0299|consensus

Probab=99.94  E-value=2.7e-25  Score=166.91  Aligned_cols=203  Identities=22%  Similarity=0.394  Sum_probs=176.5

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      .+|...|.+++.++||++|++|+.|..|.||+.++...++.+++|...|.+++|-.....+++++.|+.+++|+++....
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~  278 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY  278 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence            37899999999999999999999999999999999999999999999999999998888899999999999999998888


Q ss_pred             eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCC
Q psy4391         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (231)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (231)
                      +.++.+|.+.|..+....-++.+-.|+.|+++++|++.... -..+.++.+.+.|++|-. ...+++|+.+|.|.+|++.
T Consensus       279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~  356 (479)
T KOG0299|consen  279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLL  356 (479)
T ss_pred             HHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeec
Confidence            88889999999999888777888888899999999995433 344567788899999874 5678999999999999999


Q ss_pred             CCceeeeeecCC-----------CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q psy4391         184 SGQCLKTLIDDD-----------NPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       184 ~~~~~~~~~~~~-----------~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~  228 (231)
                      ..+.+......+           ...|++++..|...++++|+.+|.|++|-..+.
T Consensus       357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            888776553222           126788999999999999999999999986554

>KOG0264|consensus

Probab=99.94  E-value=3.9e-25  Score=165.65  Aligned_cols=202  Identities=23%  Similarity=0.409  Sum_probs=161.8

Q ss_pred             cccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCc----------EEEEEecccccEEEEEECCCC-CEEEEecCCC
Q psy4391          24 AGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGK----------FEKTISGHKLGISDVAWSSDS-RLLVSGSDDK   91 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g   91 (231)
                      -.|.+.|..+.+.|+.. .+|+++..+.++|||.....          ....+.+|...-.+++|++.. -.+++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            46999999999999777 45667888999999975321          122567777656778999853 4688999999


Q ss_pred             cEEEEeCCCce-------eeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECC--CCceeeeccCCCCCeEEEEE
Q psy4391          92 TLKIWELSSGK-------CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVR--TGKCLKTLPAHSDPVSAVHF  161 (231)
Q Consensus        92 ~i~~~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~--~~~~~~~~~~~~~~v~~~~~  161 (231)
                      .|++||+....       +...+.+|.+.|..++|++.. .++++++.|+.+.+||+|  +.+......+|.+.+.+++|
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f  280 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF  280 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence            99999997532       345567899999999999854 677888999999999999  45555667889999999999


Q ss_pred             cC-CCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeC
Q psy4391         162 NR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDS  225 (231)
Q Consensus       162 ~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s~d~~v~vwd~  225 (231)
                      +| ++..||+|+.|++|.+||+++.+........+...|..+.|+|+.. .||+++.|+++.|||.
T Consensus       281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl  346 (422)
T KOG0264|consen  281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL  346 (422)
T ss_pred             CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence            99 4567789999999999999986654334456677899999999865 6777889999999996

>KOG0288|consensus

Probab=99.94  E-value=6.8e-26  Score=168.12  Aligned_cols=203  Identities=27%  Similarity=0.433  Sum_probs=170.7

Q ss_pred             ceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      +.+..+|.+|++.|+++.|......+++|+.|.+++.||+....+.+.+.. ...+.+++..  ...++++..|+.|++|
T Consensus       251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfw  327 (459)
T KOG0288|consen  251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFW  327 (459)
T ss_pred             hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEE
Confidence            446678899999999999988777799999999999999987766655432 2345555554  4457899999999999


Q ss_pred             eCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC----CCCeEEEEEcCCCCeEEEEe
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH----SDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~  172 (231)
                      |..+......+..+. .+.++..++++..+.+.+.|..+.+.|+++......+.+.    ....+.+.|+|++.|+++|+
T Consensus       328 D~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS  406 (459)
T KOG0288|consen  328 DIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS  406 (459)
T ss_pred             eccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc
Confidence            999988888887654 8999999999999999999999999999988766655432    23467899999999999999


Q ss_pred             cCCeEEEEeCCCCceeeeeecCCCC-CeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         173 YDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      .||.|+||++.++++...+...... .|.+++|+|.|.+|++++.++.+.+|
T Consensus       407 ~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  407 ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            9999999999999988777654443 69999999999999999999999999

>KOG0283|consensus

Probab=99.94  E-value=5.5e-25  Score=175.81  Aligned_cols=201  Identities=23%  Similarity=0.415  Sum_probs=162.8

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECC-CCCEEEEecCCCcEEEEeCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~d~~   99 (231)
                      ..+.||.+.|..+.||.+ .+|++++.|.+|++|++....++..+. |..-|++++|+| |.+++++|+.||.|+||++.
T Consensus       363 ~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~  440 (712)
T KOG0283|consen  363 CEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS  440 (712)
T ss_pred             hhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence            346799999999999975 567788999999999998777777766 667899999999 78899999999999999998


Q ss_pred             CceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc--------CCCCCeEEEEEcCCC-CeEEE
Q psy4391         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP--------AHSDPVSAVHFNRDG-SLIVS  170 (231)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~-~~l~~  170 (231)
                      ..+.+. +..-...|+++++.|+|+..+.|+.+|.+++|+....+......        .....|+.+.|.|.. ..+++
T Consensus       441 d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV  519 (712)
T KOG0283|consen  441 DKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV  519 (712)
T ss_pred             cCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence            766543 33345789999999999999999999999999988665543321        112379999999743 35778


Q ss_pred             EecCCeEEEEeCCCCceeeeeecCC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         171 SSYDGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .+.|..|+|||.++...+..+....  ..+ ....|+.||+++++++.|..|.+|+.
T Consensus       520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ-~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ-ISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             ecCCCceEEEeccchhhhhhhcccccCCcc-eeeeEccCCCEEEEeecCceEEEEeC
Confidence            8889999999998777666654322  223 34579999999999999999999996

>KOG0313|consensus

Probab=99.94  E-value=6.8e-25  Score=161.32  Aligned_cols=206  Identities=30%  Similarity=0.506  Sum_probs=168.4

Q ss_pred             eEEeecccccceEEEEECCCCC---EEEEEeCCCcEEEeecCCCcEE----EEEecccccEEEEEECCCCCEEEEecCCC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGE---WLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSRLLVSGSDDK   91 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~---~l~~~~~dg~i~i~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~~g   91 (231)
                      ..+++.||.++|.+++|.....   .+++++.|.++++|....+...    ....+|...|.++...++|..+++++-|.
T Consensus       136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~  215 (423)
T KOG0313|consen  136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT  215 (423)
T ss_pred             eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence            4566779999999888854333   5899999999999988665432    22348999999999999999999999999


Q ss_pred             cEEEEeCCC-------------------------ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCcee
Q psy4391          92 TLKIWELSS-------------------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL  146 (231)
Q Consensus        92 ~i~~~d~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  146 (231)
                      .|.+|+.+.                         +.++..+.+|...|.++.|++ ...+++++.|.+|+.||+.++..+
T Consensus       216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~  294 (423)
T KOG0313|consen  216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLK  294 (423)
T ss_pred             eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccce
Confidence            999999321                         123455678999999999988 788999999999999999999987


Q ss_pred             eeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCc--eeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEE
Q psy4391         147 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLW  223 (231)
Q Consensus       147 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s~d~~v~vw  223 (231)
                      ..+.. .....++..+|..++|++|+.|..+++||.+++.  .+..-+..+...|..+.|+|... .|++++.||++++|
T Consensus       295 ~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW  373 (423)
T KOG0313|consen  295 STLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW  373 (423)
T ss_pred             eeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence            77654 4678999999999999999999999999998753  33333345556899999999775 56789999999999


Q ss_pred             eCC
Q psy4391         224 DSY  226 (231)
Q Consensus       224 d~~  226 (231)
                      |.-
T Consensus       374 DvR  376 (423)
T KOG0313|consen  374 DVR  376 (423)
T ss_pred             Eec
Confidence            963

>KOG1274|consensus

Probab=99.94  E-value=1.6e-24  Score=174.72  Aligned_cols=202  Identities=27%  Similarity=0.503  Sum_probs=170.5

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC-----------cEEEE-----------------------------
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------KFEKT-----------------------------   64 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-----------~~~~~-----------------------------   64 (231)
                      .|+...+.++|.|+|+.|++++.||.|++|+....           .....                             
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~   90 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT   90 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence            68888999999999999999999999999975321           11110                             


Q ss_pred             -EecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCC
Q psy4391          65 -ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG  143 (231)
Q Consensus        65 -~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  143 (231)
                       +.....++..++++-+|+++|.|+.|-.|++.++.+....+.+++|..+|.++.++|.+++||+.+.||.|++||++++
T Consensus        91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~  170 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG  170 (933)
T ss_pred             eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence             1112335678899999999999999999999999999888999999999999999999999999999999999999988


Q ss_pred             ceeeeccC-------C-CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCC-CeEEEEECCCCCEEEEE
Q psy4391         144 KCLKTLPA-------H-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAA  214 (231)
Q Consensus       144 ~~~~~~~~-------~-~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~  214 (231)
                      .....+..       . ...+..++|+|++..+++.+.|+.|++|+..+.+....+...... .+..++|+|.|+|||++
T Consensus       171 ~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs  250 (933)
T KOG1274|consen  171 ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAS  250 (933)
T ss_pred             hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeee
Confidence            76544421       1 345678999999999999999999999999999888877665443 38889999999999999


Q ss_pred             eCCCeEEEEeCC
Q psy4391         215 TLDNTLKLWDSY  226 (231)
Q Consensus       215 s~d~~v~vwd~~  226 (231)
                      +.||.|.|||..
T Consensus       251 ~~~g~I~vWnv~  262 (933)
T KOG1274|consen  251 TLDGQILVWNVD  262 (933)
T ss_pred             ccCCcEEEEecc
Confidence            999999999975

>KOG0281|consensus

Probab=99.94  E-value=3.1e-26  Score=167.14  Aligned_cols=199  Identities=30%  Similarity=0.631  Sum_probs=164.7

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc---EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ++-+|...|..+.|+  ..++++++.|.++.+||+....   ....+.+|...|..+.|+  .++|++++.|.+|++|++
T Consensus       272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~  347 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST  347 (499)
T ss_pred             HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence            345799999999997  4589999999999999986554   223456898999988886  469999999999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      .+.+.++++.+|...+.|+.+  .++++++|+.|.+|++||+..|.++..+++|+.-|.++.|+  .+.+++|++||.|+
T Consensus       348 st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkik  423 (499)
T KOG0281|consen  348 STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIK  423 (499)
T ss_pred             cceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEE
Confidence            999999999999888877655  58899999999999999999999999999999999999995  67899999999999


Q ss_pred             EEeCCCCceeeee--------ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy4391         179 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       179 v~d~~~~~~~~~~--------~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~~  230 (231)
                      +||+..+...+..        ...+...|-.+.|+  ...+++++.|..|.|||+...+|
T Consensus       424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPP  481 (499)
T ss_pred             EEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCc
Confidence            9999776433211        11234456666665  46789999999999999865544

>KOG0973|consensus

Probab=99.94  E-value=2.5e-25  Score=182.05  Aligned_cols=197  Identities=30%  Similarity=0.450  Sum_probs=164.6

Q ss_pred             EEeeccc-ccceEEEEECCCCCEEEEEe--CCCcEEEeecCC------------CcEEEEEecccccEEEEEECCCCCEE
Q psy4391          20 KFTLAGH-TKAVSSVKFSPNGEWLASSS--ADKLIKIWGAYD------------GKFEKTISGHKLGISDVAWSSDSRLL   84 (231)
Q Consensus        20 ~~~~~~h-~~~i~~~~~~~~~~~l~~~~--~dg~i~i~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l   84 (231)
                      +..+-+| ...|.++..+|+|..+++|+  .||.++||+.+.            .+....+..|.+.|.++.|+|||+++
T Consensus         5 kp~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~l   84 (942)
T KOG0973|consen    5 KPTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYL   84 (942)
T ss_pred             cccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeE
Confidence            3444455 45699999999999999999  899999998642            12234456788899999999999999


Q ss_pred             EEecCCCcEEEEeCCC------------------ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCcee
Q psy4391          85 VSGSDDKTLKIWELSS------------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL  146 (231)
Q Consensus        85 ~~~~~~g~i~~~d~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~  146 (231)
                      |+|++|+.|.+|+...                  .+....+.+|.+.|..++|+|++.++++++.|++|.+|+.++...+
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~  164 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL  164 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence            9999999999998762                  1255677889999999999999999999999999999999999999


Q ss_pred             eeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCC-----CCCeEEEEECCCCCEEEEEeC
Q psy4391         147 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-----NPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       147 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~~i~~~~~s~~g~~l~~~s~  216 (231)
                      +.+..|.+.|..+.|+|-|++||+-+.|++|++|+..+....+.+....     ..-+.-+.|||||++|++...
T Consensus       165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            9999999999999999999999999999999999987765555543322     223456889999999988653

>KOG0274|consensus

Probab=99.94  E-value=1.6e-24  Score=173.61  Aligned_cols=193  Identities=36%  Similarity=0.705  Sum_probs=173.0

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEE-EecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      |...+.+..|.  +.++++++.+..|++|+..++..... +.+|.++|..+++..-+.++++|+.|.++++||..++++.
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~  284 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT  284 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence            45667788887  66788899999999999998888877 9999999999999887889999999999999999999999


Q ss_pred             eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCC
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (231)
                      +.+.+|.+.+.++...  ...+++|+.|.+|++|+++++..+..+.+|.++|.++..+  +.++++|+.|+.|.+||+.+
T Consensus       285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~  360 (537)
T KOG0274|consen  285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT  360 (537)
T ss_pred             EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence            9999999988877654  4578889999999999999999999999999999999987  88999999999999999999


Q ss_pred             CceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       185 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ++++..+.. +...|.++.+.+. ..+++|+.|+.|++||..
T Consensus       361 ~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~  400 (537)
T KOG0274|consen  361 GKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR  400 (537)
T ss_pred             ceeeeeecC-CcceEEEEEecCc-ceEEeeeeccceEeecCC
Confidence            999998876 6677888887766 889999999999999963

>KOG4283|consensus

Probab=99.94  E-value=6.8e-25  Score=156.90  Aligned_cols=200  Identities=26%  Similarity=0.491  Sum_probs=163.0

Q ss_pred             ccccceEEEEECC-CCCEEEEEeCCCcEEEeecCCCc----------EEEE-----EecccccEEEEEECC-CCCEEEEe
Q psy4391          25 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGK----------FEKT-----ISGHKLGISDVAWSS-DSRLLVSG   87 (231)
Q Consensus        25 ~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~----------~~~~-----~~~~~~~v~~~~~~~-~~~~l~~~   87 (231)
                      .|.+.|.++...+ .|+++++|+.||.+.+||++...          ....     -.+|+..|..+.|-| |..++.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            5889999999988 68899999999999999986432          0111     124677899999998 55677888


Q ss_pred             cCCCcEEEEeCCCceeeeeecCCCcceEEEEECCC---CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCC
Q psy4391          88 SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ---SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD  164 (231)
Q Consensus        88 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  164 (231)
                      +-|.++++||..+.+..-.++- .+.|..-+++|-   ..++|+|..+-.|++.|+.+|.....+.+|.+.|.++.|+|.
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             cccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            8999999999999877666653 455777778773   568899999999999999999999999999999999999998


Q ss_pred             CCe-EEEEecCCeEEEEeCCCC-ceeeeee-------------cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         165 GSL-IVSSSYDGLCRIWDTASG-QCLKTLI-------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       165 ~~~-l~~~~~dg~i~v~d~~~~-~~~~~~~-------------~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .++ |++|+.||.|++||++.. .+...+-             ..+...+..++|+.+|.++++++.|.++++|+.
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence            775 578999999999999764 2222221             123345788999999999999999999999996

>KOG0772|consensus

Probab=99.94  E-value=3e-25  Score=169.11  Aligned_cols=200  Identities=22%  Similarity=0.408  Sum_probs=157.5

Q ss_pred             cccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcEEE-EEe-----cccccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          24 AGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEK-TIS-----GHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~-~~~-----~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      +||...+++.+|+|..+ .+++++.||++++|++...+... .+.     +....++.++|++++..||+|+.||.|.+|
T Consensus       265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W  344 (641)
T KOG0772|consen  265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW  344 (641)
T ss_pred             CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence            58999999999999665 67899999999999997654333 232     234568899999999999999999999999


Q ss_pred             eCCCce--e-eeeecCCCc--ceEEEEECCCCCEEEEeecCCcEEEEECCCCce-eeeccC--CCCCeEEEEEcCCCCeE
Q psy4391          97 ELSSGK--C-LKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-LKTLPA--HSDPVSAVHFNRDGSLI  168 (231)
Q Consensus        97 d~~~~~--~-~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l  168 (231)
                      +.....  + ...-+.|..  .++++.|+++|++|++-+.|+.+++||++..+. +.....  ...+-+.++|+|+.+++
T Consensus       345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli  424 (641)
T KOG0772|consen  345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLI  424 (641)
T ss_pred             ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEE
Confidence            975432  2 222235554  799999999999999999999999999987543 222211  12345678999999999


Q ss_pred             EEEec------CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         169 VSSSY------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       169 ~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      ++|+.      .|.+.+||..+...++++... ...|..+.|+|.=..+.+|+.||.++||-
T Consensus       425 ~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  425 LTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             EecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeecCCCceEEEE
Confidence            99864      468999999988888777554 45577789999988899999999999873

>KOG1036|consensus

Probab=99.93  E-value=2.5e-24  Score=154.45  Aligned_cols=197  Identities=21%  Similarity=0.361  Sum_probs=151.4

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeee
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      ...|+++.|+|.++.|++++.||.+++|+.........+ .+..++.+++|.++ ..+++|+.||.|+.+|+.+++.. .
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~   89 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-Q   89 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-e
Confidence            568999999999998888899999999999766443333 46789999999874 56899999999999999987754 4


Q ss_pred             ecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCc
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  186 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  186 (231)
                      +..|...+.++...+....+++|++|++|++||.+.......+.. ...|.++..  .+..|++|+.+..+.+||+++..
T Consensus        90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence            567889999999999999999999999999999996444333332 335666554  35667777777777777776532


Q ss_pred             eee---------------e---------------------------------eec--------CCCCCeEEEEECCCCCE
Q psy4391         187 CLK---------------T---------------------------------LID--------DDNPPVSFVKFSPNGKY  210 (231)
Q Consensus       187 ~~~---------------~---------------------------------~~~--------~~~~~i~~~~~s~~g~~  210 (231)
                      ...               .                                 +..        ....||++++|+|-...
T Consensus       167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t  246 (323)
T KOG1036|consen  167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT  246 (323)
T ss_pred             chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence            110               0                                 000        01135889999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCC
Q psy4391         211 ILAATLDNTLKLWDSYPCL  229 (231)
Q Consensus       211 l~~~s~d~~v~vwd~~~~~  229 (231)
                      ||+|+.||.|.+||.+++.
T Consensus       247 faTgGsDG~V~~Wd~~~rK  265 (323)
T KOG1036|consen  247 FATGGSDGIVNIWDLFNRK  265 (323)
T ss_pred             EEecCCCceEEEccCcchh
Confidence            9999999999999987753

>KOG0299|consensus

Probab=99.93  E-value=1.9e-24  Score=162.34  Aligned_cols=206  Identities=25%  Similarity=0.434  Sum_probs=176.9

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEE-EE-----------------ecccccEEEEEECCCCCEE
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-TI-----------------SGHKLGISDVAWSSDSRLL   84 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~-~~-----------------~~~~~~v~~~~~~~~~~~l   84 (231)
                      +..|..+|.+++++|++++.++++.+|+|.-|++.+++... .+                 ..|...+..++.++|+++|
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl  217 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL  217 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence            35799999999999999999999999999999987765331 10                 1455568899999999999


Q ss_pred             EEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCC
Q psy4391          85 VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD  164 (231)
Q Consensus        85 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  164 (231)
                      ++|+.|..|.||+.++.+.++.+++|.+.|.+++|-.....+++++.|+.+++|+++....+..+.+|.+.|..+....-
T Consensus       218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r  297 (479)
T KOG0299|consen  218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR  297 (479)
T ss_pred             EecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc
Confidence            99999999999999999999999999999999999888889999999999999999988889999999999999988878


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCC
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLPK  231 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~~~  231 (231)
                      ++.+.+|+.|+++++|++....  +.+...+...+.+++|-.+ ..+++|+.+|.|.+|+...+.|.
T Consensus       298 eR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkpl  361 (479)
T KOG0299|consen  298 ERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPL  361 (479)
T ss_pred             cceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCce
Confidence            8888888899999999995443  3334455666788887655 57899999999999999887773

>KOG0300|consensus

Probab=99.93  E-value=8.4e-25  Score=158.13  Aligned_cols=209  Identities=26%  Similarity=0.463  Sum_probs=180.6

Q ss_pred             ceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      +.+...+.||...|..++.......+.+++.|.+-+||.++++.+.....+|.+.|.++.|++.+.++++++.|++-.+|
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            34445567999999999998877888899999999999999999999999999999999999999999999999999998


Q ss_pred             eC------CC----------------------------------ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEE
Q psy4391          97 EL------SS----------------------------------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR  136 (231)
Q Consensus        97 d~------~~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  136 (231)
                      ..      ..                                  ..++..+++|...|.++.|-..|+.++++++|.+-.
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            62      10                                  012345667888888999999999999999999999


Q ss_pred             EEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC
Q psy4391         137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       137 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~  216 (231)
                      +||++++..+..+.+|....+.++-+|..+++++.+.|.+.++||++..-.-..++..+...|++..|.-+. .+++|+.
T Consensus       298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD  376 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD  376 (481)
T ss_pred             eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC
Confidence            999999999999999999999999999999999999999999999985433334456677788998888764 5889999


Q ss_pred             CCeEEEEeCC
Q psy4391         217 DNTLKLWDSY  226 (231)
Q Consensus       217 d~~v~vwd~~  226 (231)
                      |.+|+|||..
T Consensus       377 DrTvKvWdLr  386 (481)
T KOG0300|consen  377 DRTVKVWDLR  386 (481)
T ss_pred             CceEEEeeec
Confidence            9999999964

>KOG0300|consensus

Probab=99.93  E-value=2.6e-24  Score=155.60  Aligned_cols=206  Identities=30%  Similarity=0.556  Sum_probs=174.3

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeec------CC------------------------------C----cE
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA------YD------------------------------G----KF   61 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~------~~------------------------------~----~~   61 (231)
                      +..||.++|.+++|++.+.++++++.|++-.||..      ..                              +    ..
T Consensus       185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP  264 (481)
T KOG0300|consen  185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP  264 (481)
T ss_pred             eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence            45699999999999999999999999999999961      00                              0    01


Q ss_pred             EEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECC
Q psy4391          62 EKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR  141 (231)
Q Consensus        62 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  141 (231)
                      ...+.+|...|.+..|...|+.+++++.|.+-.+||+++++.+..+.+|......|+-+|..+++++.+.|.+.++||.+
T Consensus       265 l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR  344 (481)
T KOG0300|consen  265 LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR  344 (481)
T ss_pred             eeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch
Confidence            23466788888889999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC-ceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce-eeeeecCCCCCeEEEEECCCCCEEEEEeCCCe
Q psy4391         142 TG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNT  219 (231)
Q Consensus       142 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~  219 (231)
                      .. ..+..|.+|...|++..|.-+. .+++|+.|.+|++||+++.+. +.++.  -.++++-++++..++.++.-..+.+
T Consensus       345 eaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRq  421 (481)
T KOG0300|consen  345 EAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQ  421 (481)
T ss_pred             hhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCce
Confidence            33 3467789999999999998754 578999999999999987654 33332  2456788999998889999888889


Q ss_pred             EEEEeC----CCCCC
Q psy4391         220 LKLWDS----YPCLP  230 (231)
Q Consensus       220 v~vwd~----~~~~~  230 (231)
                      |++||.    .++||
T Consensus       422 vRlfDlnG~RlaRlP  436 (481)
T KOG0300|consen  422 VRLFDLNGNRLARLP  436 (481)
T ss_pred             EEEEecCCCccccCC
Confidence            999996    56666

>KOG0267|consensus

Probab=99.93  E-value=3.6e-26  Score=180.03  Aligned_cols=200  Identities=27%  Similarity=0.558  Sum_probs=182.3

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      .|...+.++..-..++.++.|+.|..+-+|.+........+.+|..+|.++.|+++...|++|+.+|.|++||++..+.+
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v  105 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV  105 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence            57888888888777888999999999999998776666678999999999999999999999999999999999999999


Q ss_pred             eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCC
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (231)
                      +.+.+|...+..+.|+|.+.+.+.|+.|..+++||.+...+...+..|...+..+.|+|+|++++.++.|..+++||+..
T Consensus       106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a  185 (825)
T KOG0267|consen  106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA  185 (825)
T ss_pred             hhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc
Confidence            99999999999999999999999999999999999998788888888999999999999999999999999999999999


Q ss_pred             CceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       185 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ++....+.. +...+..+.|+|..-+++.|+.|+.|++||.
T Consensus       186 gk~~~ef~~-~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl  225 (825)
T KOG0267|consen  186 GKLSKEFKS-HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL  225 (825)
T ss_pred             ccccccccc-ccccccccccCchhhhhccCCCCceeeeecc
Confidence            987776653 3456778899999999999999999999995

>KOG0278|consensus

Probab=99.93  E-value=2.2e-25  Score=156.04  Aligned_cols=199  Identities=27%  Similarity=0.494  Sum_probs=177.5

Q ss_pred             ecccccceEEEEECC---CCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          23 LAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~---~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      -.+|+++|..++|+|   +|-+|++++.||.-.+.+-+++.....+.+|++.|+......+...-++++.|-+-++||.-
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~   89 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAV   89 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhh
Confidence            358999999999986   78899999999999998899999999999999999999988887778899999999999999


Q ss_pred             CceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc-eeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      ++..++.+. |..-|..++|+.|.+.|++|+.+..+++||++..+ +.+.+..|.+.|+.+-|....+.+++.+.|+.|+
T Consensus        90 tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR  168 (334)
T KOG0278|consen   90 TGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR  168 (334)
T ss_pred             hhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence            998888775 66778899999999999999999999999998754 4667889999999999998888999999999999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +||.++++.++++..  ..+++++.++++|++|.++ ..+.|.+||+
T Consensus       169 LWD~rTgt~v~sL~~--~s~VtSlEvs~dG~ilTia-~gssV~Fwda  212 (334)
T KOG0278|consen  169 LWDHRTGTEVQSLEF--NSPVTSLEVSQDGRILTIA-YGSSVKFWDA  212 (334)
T ss_pred             EEEeccCcEEEEEec--CCCCcceeeccCCCEEEEe-cCceeEEecc
Confidence            999999998888754  4578999999999987665 4689999997

>KOG2055|consensus

Probab=99.93  E-value=1.2e-23  Score=158.28  Aligned_cols=202  Identities=18%  Similarity=0.339  Sum_probs=170.5

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCC--cEEEEEecccccEEEEEECCCCC-EEEEecCCCcEEEEeCCCcee
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      .+.|+++.|+|....+++|+.|+.+++|.+...  ..+..+.-...++...+|.|+|. .+++++....++.||+.+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            468999999999999999999999999988532  34455555577899999999998 888999999999999988664


Q ss_pred             ee--eecCCC-cceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEE
Q psy4391         104 LK--TLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       104 ~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~  180 (231)
                      .+  ...++. ..+....++|++++|+..+..|.|.+....+++.+..+.. .+.+..+.|+.+++.|++++.+|.|.+|
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~  371 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVW  371 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence            32  222222 2455678899999999999999999999999988777754 6789999999999999999999999999


Q ss_pred             eCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCC
Q psy4391         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCL  229 (231)
Q Consensus       181 d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~  229 (231)
                      |++...++..+.....-.-+.++.+++|.|||+|+..|.|.|||...|.
T Consensus       372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~  420 (514)
T KOG2055|consen  372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF  420 (514)
T ss_pred             ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence            9999999998887766666789999999999999999999999975553

>KOG0308|consensus

Probab=99.93  E-value=1.5e-24  Score=169.23  Aligned_cols=204  Identities=28%  Similarity=0.495  Sum_probs=179.5

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC--cEEEEEecccccEEEEEE-CCCCCEEEEecCCCcEEEEe
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAW-SSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~g~i~~~d   97 (231)
                      .++..|..-|..++...+|+.+++++.|-+|++|+...+  -....+..|..-|.+++. .++...+|+|+-|+.|.+||
T Consensus        67 asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWD  146 (735)
T KOG0308|consen   67 ASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWD  146 (735)
T ss_pred             hhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEE
Confidence            345568888999999999999999999999999998766  355667788889999999 77888899999999999999


Q ss_pred             CCCcee--e--------eeec-CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCC
Q psy4391          98 LSSGKC--L--------KTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS  166 (231)
Q Consensus        98 ~~~~~~--~--------~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  166 (231)
                      +.++..  +        ..+. ++...+.+++.++.|..++.|+.++.+++||.++.+.+..+.+|..-|+++..++||.
T Consensus       147 in~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt  226 (735)
T KOG0308|consen  147 INTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT  226 (735)
T ss_pred             ccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC
Confidence            997632  1        1222 5677899999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         167 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .+++++.||+|++||+...+++.++..+... +.++..+|+=+.+++|+.||.|..=|.
T Consensus       227 ~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~-VWaL~~~~sf~~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  227 RLLSASSDGTIRLWDLGQQRCLATYIVHKEG-VWALQSSPSFTHVYSGGRDGNIYRTDL  284 (735)
T ss_pred             eEeecCCCceEEeeeccccceeeeEEeccCc-eEEEeeCCCcceEEecCCCCcEEeccc
Confidence            9999999999999999999999998766655 889999999999999999999987774

>KOG0269|consensus

Probab=99.93  E-value=8.3e-25  Score=173.51  Aligned_cols=200  Identities=22%  Similarity=0.411  Sum_probs=164.8

Q ss_pred             eecccccceEEEEECCCC-CEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECC-CCCEEEEecCCCcEEEEeCC
Q psy4391          22 TLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~d~~   99 (231)
                      .+..|++.+.++.|++.. .+|++|+.||.|+.||++.......+.+....|.++.|+| .+..++++.++|.+++||++
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR  207 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR  207 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence            456899999999999855 4788999999999999998888888888888899999998 46788999999999999998


Q ss_pred             C-ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC-CCCeEEEEEcCCCCe-EEEEec--C
Q psy4391         100 S-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-SDPVSAVHFNRDGSL-IVSSSY--D  174 (231)
Q Consensus       100 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~--d  174 (231)
                      . .++...+.+|.+++.++.|+|++.+||||+.|+.|++||..+.+.-.....+ ..++..++|-|...+ |++++.  |
T Consensus       208 qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d  287 (839)
T KOG0269|consen  208 QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD  287 (839)
T ss_pred             CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcccc
Confidence            6 4567778899999999999999999999999999999999865432222222 358899999997664 555553  6


Q ss_pred             CeEEEEeCCCCceeeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEE
Q psy4391         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLK  221 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~s~d~~v~  221 (231)
                      -.|+|||++..-........+...++.++|.. |-..|.+++.||.|.
T Consensus       288 tsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  288 TSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             ceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            68999999987777666777778888899966 445778888888764

>KOG0641|consensus

Probab=99.93  E-value=2.5e-22  Score=139.14  Aligned_cols=211  Identities=29%  Similarity=0.523  Sum_probs=158.2

Q ss_pred             CCccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCC---C-------c-----EEEEEecccccEEEEEE
Q psy4391          13 PKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---G-------K-----FEKTISGHKLGISDVAW   77 (231)
Q Consensus        13 ~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~---~-------~-----~~~~~~~~~~~v~~~~~   77 (231)
                      .++.+.- .+.-.....|.+++|+|.|.+.+.|+...+.+|-....   .       +     ..+.-+.|.+.+.+.+|
T Consensus        19 ~k~~f~~-i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~w   97 (350)
T KOG0641|consen   19 EKKHFEA-INILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAW   97 (350)
T ss_pred             cccceEE-EEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEe
Confidence            3333433 33335667899999999999999999999888864311   1       1     11233457888999999


Q ss_pred             CCCCCEEEEecCCCcEEEEeCCCceee-----eeec--------------------------------------------
Q psy4391          78 SSDSRLLVSGSDDKTLKIWELSSGKCL-----KTLK--------------------------------------------  108 (231)
Q Consensus        78 ~~~~~~l~~~~~~g~i~~~d~~~~~~~-----~~~~--------------------------------------------  108 (231)
                      +|+|+.|++|+.|..|++.......+.     ..+.                                            
T Consensus        98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~  177 (350)
T KOG0641|consen   98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH  177 (350)
T ss_pred             cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce
Confidence            999999999999999998754321110     1111                                            


Q ss_pred             ---CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccC--C-----CCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         109 ---GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA--H-----SDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       109 ---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                         +|.+.+.++ ++-++..+++|+.|.+|++||++-..++..+..  |     ...|.+++..|.|++|++|-.|....
T Consensus       178 a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~  256 (350)
T KOG0641|consen  178 ALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCM  256 (350)
T ss_pred             eecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceE
Confidence               222222221 222456788999999999999998887776532  1     25789999999999999999999999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +||++.++.++.+. .+...|.++.|+|.-.|+++++.|..|++-|..
T Consensus       257 lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  257 LYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             EEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            99999999887764 566789999999999999999999999999864

>KOG0301|consensus

Probab=99.92  E-value=9.1e-24  Score=165.86  Aligned_cols=193  Identities=31%  Similarity=0.520  Sum_probs=165.2

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      ++|.+|...|.++....++. +++|+.|.++++|..  ++....+.+|...|++++..|++ .+++|+.|.+|++|.-  
T Consensus        95 ~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--  168 (745)
T KOG0301|consen   95 YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--  168 (745)
T ss_pred             hhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--
Confidence            56779999999999988888 899999999999986  44556689999999999999987 7889999999999986  


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEE
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~  180 (231)
                      ++.++.+.+|.+.|..+++-+++ .++++++||.|++|++ +|..+..+.+|...++++...+++..+++++.|+++++|
T Consensus       169 ~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW  246 (745)
T KOG0301|consen  169 GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIW  246 (745)
T ss_pred             CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEe
Confidence            66788999999999999988764 5778999999999999 688899999999999999988888999999999999999


Q ss_pred             eCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       181 d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +..  ++.+.+... ...+.++.+=++|+ +++|+.||.|+||..
T Consensus       247 ~~~--e~~q~I~lP-ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~  287 (745)
T KOG0301|consen  247 KKD--ECVQVITLP-TTSIWSAKVLLNGD-IVVGGSDGRVRVFTV  287 (745)
T ss_pred             ecC--ceEEEEecC-ccceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence            876  555655433 33567777777777 567777999999975

>KOG1273|consensus

Probab=99.92  E-value=3.2e-23  Score=149.55  Aligned_cols=195  Identities=23%  Similarity=0.437  Sum_probs=158.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecC
Q psy4391          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG  109 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~  109 (231)
                      ..|+.|++.|.+||.|..||.|.|||..+....+.+.+|-.+|.+++|+++|++|++++.|..|.+||+..+.+++.++ 
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence            7899999999999999999999999999988888889999999999999999999999999999999999999888887 


Q ss_pred             CCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeeeccCC-----CCCeEEEEEcCCCCeEEEEecCCeEEEEeCC
Q psy4391         110 HSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAH-----SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (231)
Q Consensus       110 ~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (231)
                      ..++|..+.|+|.. +.++..-.+..-.+.++..+.. ..+...     .....+..|++.|+++++|...|.+.++|..
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence            46789999999954 3333333333344555443221 111111     1122334688999999999999999999999


Q ss_pred             CCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       184 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +.+++..+.......|..+.++..|++|+..+.|+.||.|+..
T Consensus       184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            9988887765555678899999999999999999999999964

>KOG0308|consensus

Probab=99.92  E-value=8.1e-24  Score=165.16  Aligned_cols=205  Identities=24%  Similarity=0.396  Sum_probs=176.3

Q ss_pred             EeecccccceEEEEE-CCCCCEEEEEeCCCcEEEeecCCCcE----------EEEEe-cccccEEEEEECCCCCEEEEec
Q psy4391          21 FTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKF----------EKTIS-GHKLGISDVAWSSDSRLLVSGS   88 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~-~~~~~~l~~~~~dg~i~i~~~~~~~~----------~~~~~-~~~~~v~~~~~~~~~~~l~~~~   88 (231)
                      -++..|..-|.|+++ .++..++|+|+-|+.|.+||+.++..          ...+. ++..++.+++..+.|..|++|+
T Consensus       111 stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGg  190 (735)
T KOG0308|consen  111 STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGG  190 (735)
T ss_pred             hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecC
Confidence            456789999999999 88888999999999999999986622          12222 6777899999999999999999


Q ss_pred             CCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeE
Q psy4391          89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus        89 ~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  168 (231)
                      ..+.+++||.++.+.+..+++|...|.++..++||+.+++++.||+|++||+....++..+..|...+.++..+|+-..+
T Consensus       191 tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~v  270 (735)
T KOG0308|consen  191 TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHV  270 (735)
T ss_pred             cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         169 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ++|+.||.|..-|+++...... ......++..+..+.+.+-+-+++.|+.|+-|-.-
T Consensus       271 YsG~rd~~i~~Tdl~n~~~~tl-ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  271 YSGGRDGNIYRTDLRNPAKSTL-ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             EecCCCCcEEecccCCchhheE-eecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence            9999999999999988643333 33445567777777555555677889999999753

>KOG0639|consensus

Probab=99.92  E-value=3e-24  Score=163.42  Aligned_cols=196  Identities=22%  Similarity=0.447  Sum_probs=168.4

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCC--cEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      ..-|.++.+.|||+.|++|++-.++.|||+...  +...++......+.+++.+||.+..++++.||.|.|||+.+...+
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V  544 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV  544 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence            346889999999999999999999999998644  334445444456788999999999999999999999999999999


Q ss_pred             eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceee-------------------------------------
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK-------------------------------------  147 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-------------------------------------  147 (231)
                      +.+++|.+.+.|+.++++|..|-+|+-|.+|+-||++.+..+.                                     
T Consensus       545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp  624 (705)
T KOG0639|consen  545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP  624 (705)
T ss_pred             ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc
Confidence            9999999999999999999999999999999999998764321                                     


Q ss_pred             ---eccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         148 ---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       148 ---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                         .+..|+..|.++.|.+.|+++++.+.|..+..|...-|..+.  ...+.++|.++.+|-|.+|+++|+.|.+..||.
T Consensus       625 ~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF--qskE~SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  625 EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--QSKESSSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             cceeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee--eccccCcceeeeeccCceEEEecCCCcceEEEE
Confidence               123456788999999999999999999999999988776544  345677899999999999999999999999886

>KOG1539|consensus

Probab=99.92  E-value=2.6e-23  Score=166.27  Aligned_cols=195  Identities=27%  Similarity=0.454  Sum_probs=174.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEE---ecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      ..+++++.++.|++.+.|...|.|.+|+++.+-....+   ..|+.+|.+++...-++.+++++.+|.+.+||..+....
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            57899999999999999999999999999999887777   478899999999988899999999999999999988877


Q ss_pred             eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCC
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (231)
                      ..++- ...+..+..+.....++.+..|-.|.++|..+.+.++.+.+|.+.|++++|||||++|++++.|++|++||+.+
T Consensus       529 ~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  529 KSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             eeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence            77764 34466777888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeeeecCCCCCeEEEEECCCCCEEEEEeCC-CeEEEEeC
Q psy4391         185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDS  225 (231)
Q Consensus       185 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d-~~v~vwd~  225 (231)
                      +.++-.+...  .+..++.|+|+|++||+...| +-|.+|-.
T Consensus       608 ~~lID~~~vd--~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  608 GTLIDGLLVD--SPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             cceeeeEecC--CcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            9988776543  456789999999999999998 68999974

>KOG1332|consensus

Probab=99.92  E-value=1e-23  Score=147.04  Aligned_cols=203  Identities=24%  Similarity=0.366  Sum_probs=166.0

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC---cEEEEEecccccEEEEEECC--CCCEEEEecCCCcEEEEe
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~g~i~~~d   97 (231)
                      -..|...|......-.|++||+++.|++|+|+..+..   +...++.+|.++|..++|..  -|.+||+++-||.|.+|.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            3578888998888889999999999999999998754   45678899999999999976  799999999999999999


Q ss_pred             CCCcee--eeeecCCCcceEEEEECCC--CCEEEEeecCCcEEEEECCCC-c--eeeeccCCCCCeEEEEEcCC---C--
Q psy4391          98 LSSGKC--LKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTG-K--CLKTLPAHSDPVSAVHFNRD---G--  165 (231)
Q Consensus        98 ~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~-~--~~~~~~~~~~~v~~~~~~~~---~--  165 (231)
                      -++++-  ......|...+.+++|.|.  |-.|++++.||.|.+++.+.. .  ..+...+|+-.|.+++|.|-   |  
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            887743  3344578888999999885  578999999999999988754 1  23445678888999999885   4  


Q ss_pred             ---------CeEEEEecCCeEEEEeCCCCcee-eeeecCCCCCeEEEEECCCC----CEEEEEeCCCeEEEEeC
Q psy4391         166 ---------SLIVSSSYDGLCRIWDTASGQCL-KTLIDDDNPPVSFVKFSPNG----KYILAATLDNTLKLWDS  225 (231)
Q Consensus       166 ---------~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~~i~~~~~s~~g----~~l~~~s~d~~v~vwd~  225 (231)
                               +.|++|+.|..|++|+..+.+-. ...+..+..-+..++|.|.-    .++|+++.||+|-||-.
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence                     46999999999999998875432 22244566678889999874    58999999999999964

>KOG0303|consensus

Probab=99.91  E-value=1.3e-22  Score=150.29  Aligned_cols=208  Identities=23%  Similarity=0.419  Sum_probs=166.1

Q ss_pred             ecccccceEEEEECC-CCCEEEEEeCCCcEEEeecCCCc-------EEEEEecccccEEEEEECCC-CCEEEEecCCCcE
Q psy4391          23 LAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGK-------FEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTL   93 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i   93 (231)
                      ++||++.|..++|+| +...||+|+.|.+|.||.+-++.       ....+.+|...|.-++|+|. .+.|++++.|..|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            469999999999999 45578999999999999985442       35667899999999999995 4567899999999


Q ss_pred             EEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCC-eEEEEEcCCCCeEEEEe
Q psy4391          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP-VSAVHFNRDGSLIVSSS  172 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~  172 (231)
                      .+||+.+++.+..+. |.+.+.++.|+.+|.++++.+.|..|++||.++++.+..-.+|.+. ...+.|..++..+.+|-
T Consensus       157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf  235 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF  235 (472)
T ss_pred             EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence            999999999888887 8999999999999999999999999999999999988887777652 33455777888444443


Q ss_pred             ---cCCeEEEEeCCCCceeeeeec-CCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCCCCCC
Q psy4391         173 ---YDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSYPCLPK  231 (231)
Q Consensus       173 ---~dg~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~~~~~~  231 (231)
                         .+.++.+||..+.+....+.. .....|..--+++|...++.++ .|+.||-|...+--|+
T Consensus       236 sr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~  299 (472)
T KOG0303|consen  236 SRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPF  299 (472)
T ss_pred             ccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCce
Confidence               457899999876544333322 2334566667899999887766 4899999997665553

>KOG0302|consensus

Probab=99.91  E-value=1e-22  Score=149.90  Aligned_cols=205  Identities=28%  Similarity=0.481  Sum_probs=160.0

Q ss_pred             eEEeecccccceEEEEECCCCC--EEEEEeCCCcEEEeecCC----------------CcEEEEEecccccEEEEEECCC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYD----------------GKFEKTISGHKLGISDVAWSSD   80 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~--~l~~~~~dg~i~i~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~   80 (231)
                      +......|.+.+..+.-++-++  +.++-+..|.|+||++..                .+.+..+.+|...=..+.|+|-
T Consensus       143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~  222 (440)
T KOG0302|consen  143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPI  222 (440)
T ss_pred             ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccc
Confidence            4444557888999999888765  445557789999999632                1233455667666678999993


Q ss_pred             -CCEEEEecCCCcEEEEeCCCceee---eeecCCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCc---eeeeccCC
Q psy4391          81 -SRLLVSGSDDKTLKIWELSSGKCL---KTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGK---CLKTLPAH  152 (231)
Q Consensus        81 -~~~l~~~~~~g~i~~~d~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~  152 (231)
                       ...+++|...+.|++|...++.-.   ..+.+|...|-.++|+|. ...+++++.||.|++||+|.+.   ++.. .+|
T Consensus       223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh  301 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAH  301 (440)
T ss_pred             cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ecc
Confidence             234788888899999999886532   345578888999999996 4788999999999999999883   3333 788


Q ss_pred             CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCc---eeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeC
Q psy4391         153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDS  225 (231)
Q Consensus       153 ~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~~i~~~~~s~~g-~~l~~~s~d~~v~vwd~  225 (231)
                      .+.|..+.|+....+||+|+.||.++|||++..+   .+..+ ..+..+|+++.|+|.. ..+++++.|++|.+||.
T Consensus       302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDl  377 (440)
T KOG0302|consen  302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDL  377 (440)
T ss_pred             CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE-EeccCCeeEEEeccccCceEEeccCCCcEEEEEe
Confidence            8999999999988899999999999999998643   33444 3567789999999975 46778888999999995

>KOG0302|consensus

Probab=99.91  E-value=6.4e-23  Score=151.03  Aligned_cols=207  Identities=25%  Similarity=0.489  Sum_probs=157.3

Q ss_pred             ceeEEeecccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcEE---EEEecccccEEEEEECCC-CCEEEEecCCC
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFE---KTISGHKLGISDVAWSSD-SRLLVSGSDDK   91 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g   91 (231)
                      ....|++.+|...=.+++|||-.. .|++|.--+.|++|...++...   ..+.+|...|.+++|+|. ...+++|+.||
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg  280 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG  280 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence            334477889999999999999332 4678877889999998877653   346678899999999995 45789999999


Q ss_pred             cEEEEeCCCce--eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCC---CceeeeccCCCCCeEEEEEcCC-C
Q psy4391          92 TLKIWELSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT---GKCLKTLPAHSDPVSAVHFNRD-G  165 (231)
Q Consensus        92 ~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~-~  165 (231)
                      .|+|||++.+.  .-...+.|.+.|..+.|+..-.+||+|+.||.+++||++.   ++.+..+.-|..+|+++.|+|. .
T Consensus       281 sIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~  360 (440)
T KOG0302|consen  281 SIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED  360 (440)
T ss_pred             eEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC
Confidence            99999999762  2223378888999999999888999999999999999985   4567788899999999999995 4


Q ss_pred             CeEEEEecCCeEEEEeCCCCce--------ee--------eee-cCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEe
Q psy4391         166 SLIVSSSYDGLCRIWDTASGQC--------LK--------TLI-DDDNPPVSFVKFSPNGK-YILAATLDNTLKLWD  224 (231)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~--------~~--------~~~-~~~~~~i~~~~~s~~g~-~l~~~s~d~~v~vwd  224 (231)
                      ..+++++.|.+|.+||+....-        ..        .++ ......+..+.|+++-. +|++.+.|| +.||-
T Consensus       361 s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  361 SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            5778889999999999864321        00        111 11223355678888754 555566665 44543

>KOG0639|consensus

Probab=99.91  E-value=1.6e-23  Score=159.50  Aligned_cols=200  Identities=21%  Similarity=0.408  Sum_probs=160.1

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc---EEEEEe--cccccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      .|.+-|.++.++...+++++|+ .|.|+|||+....   .+..+.  ....-+.++...|||+.|++|+...++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            6888899999999999999987 5889999985432   222222  234457888999999999999999999999998


Q ss_pred             Cceeee--eecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeE
Q psy4391         100 SGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (231)
Q Consensus       100 ~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  177 (231)
                      ......  .+........+++.+||.++++++..||.|.|||+.+...+..+.+|.+.+.|+.+++||..|.+|+-|.++
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv  575 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV  575 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence            654322  222222345568899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceeee---------------------------------------eecCCCCCeEEEEECCCCCEEEEEeCCC
Q psy4391         178 RIWDTASGQCLKT---------------------------------------LIDDDNPPVSFVKFSPNGKYILAATLDN  218 (231)
Q Consensus       178 ~v~d~~~~~~~~~---------------------------------------~~~~~~~~i~~~~~s~~g~~l~~~s~d~  218 (231)
                      +-||+++++.+..                                       ....+.+.|.++.|.+.|+++++.+.|+
T Consensus       576 RcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDn  655 (705)
T KOG0639|consen  576 RCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN  655 (705)
T ss_pred             eehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchh
Confidence            9999988654221                                       0122344577788888888888888888


Q ss_pred             eEEEEeC
Q psy4391         219 TLKLWDS  225 (231)
Q Consensus       219 ~v~vwd~  225 (231)
                      -+..|.+
T Consensus       656 lLnawrt  662 (705)
T KOG0639|consen  656 LLNAWRT  662 (705)
T ss_pred             hhhhccC
Confidence            8888864

>KOG0305|consensus

Probab=99.91  E-value=1.6e-22  Score=157.54  Aligned_cols=191  Identities=26%  Similarity=0.445  Sum_probs=160.4

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecC-C
Q psy4391          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG-H  110 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~-~  110 (231)
                      -+.|+ ..+.++.| ....|++|+..++........+...|+++.|+++|++|++|..+|.|.+||.+..+.++.+.. |
T Consensus       182 lldWs-s~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h  259 (484)
T KOG0305|consen  182 LLDWS-SANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH  259 (484)
T ss_pred             Hhhcc-cCCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence            46777 34455554 356899999988876655554477899999999999999999999999999999888888888 8


Q ss_pred             CcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeee-ccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceee
Q psy4391         111 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK  189 (231)
Q Consensus       111 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~  189 (231)
                      ...|.+++|+  +..+.+|+.++.|..+|++..+.... +..|...|-.+.|++|+.++|+|+.|+.+.|||....+.+.
T Consensus       260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~  337 (484)
T KOG0305|consen  260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF  337 (484)
T ss_pred             CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE
Confidence            8999999998  67899999999999999998876655 78899999999999999999999999999999997766666


Q ss_pred             eeecCCCCCeEEEEECCCCC-EEEEEe--CCCeEEEEeCCC
Q psy4391         190 TLIDDDNPPVSFVKFSPNGK-YILAAT--LDNTLKLWDSYP  227 (231)
Q Consensus       190 ~~~~~~~~~i~~~~~s~~g~-~l~~~s--~d~~v~vwd~~~  227 (231)
                      .+. .+...|.+++|+|-.. .||+|+  .|++|++||...
T Consensus       338 ~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~  377 (484)
T KOG0305|consen  338 TFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT  377 (484)
T ss_pred             EEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence            554 5567899999999764 566644  699999999753

>KOG2445|consensus

Probab=99.90  E-value=2e-21  Score=139.82  Aligned_cols=201  Identities=25%  Similarity=0.440  Sum_probs=156.0

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEeecCC--C--cEEEEEecccccEEEEEECC--CCCEEEEecCCCcEEEEe
Q psy4391          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--G--KFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~--~--~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~g~i~~~d   97 (231)
                      .+|..-|.++.|.+.|+++|+|+.|+++.|||...  +  ........|.+.|..+.|.+  -|+.+|+++.|+++.+|.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            47888999999999999999999999999999532  2  34456778999999999965  489999999999999997


Q ss_pred             CCC---------ceeeeeecCCCcceEEEEECCC--CCEEEEeecCCcEEEEECCCCc----------------------
Q psy4391          98 LSS---------GKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGK----------------------  144 (231)
Q Consensus        98 ~~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~----------------------  144 (231)
                      -..         .....++....+.|+++.|.|.  |-.+|+++.||.+++|+.....                      
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            521         1123345556678999999985  6788999999999999763210                      


Q ss_pred             ---------------------------------------------eeeeccCCCCCeEEEEEcCCC----CeEEEEecCC
Q psy4391         145 ---------------------------------------------CLKTLPAHSDPVSAVHFNRDG----SLIVSSSYDG  175 (231)
Q Consensus       145 ---------------------------------------------~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg  175 (231)
                                                                   .+..+..|..+|++++|.|+-    .+||+++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence                                                         011223567789999999952    4789999999


Q ss_pred             eEEEEeCCCCc-----------------eeee--eecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         176 LCRIWDTASGQ-----------------CLKT--LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       176 ~i~v~d~~~~~-----------------~~~~--~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                       |+||.+....                 .+..  ....+...+..+.|+-.|..|++.+.||.||+|.+
T Consensus       250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence             9999987321                 0111  13456678999999999999999999999999985

>KOG0270|consensus

Probab=99.90  E-value=2.2e-22  Score=150.87  Aligned_cols=209  Identities=25%  Similarity=0.364  Sum_probs=162.5

Q ss_pred             eecccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCC-CCEEEEecCCCcEEEEeCC
Q psy4391          22 TLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~~~d~~   99 (231)
                      ...+|+..|..+.|+..-+ .||+|+.|.+|.+||+.+++....+..|...|..+.|+|. ...|++|+.|+++.+.|.+
T Consensus       238 ~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  238 SASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             ccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence            3457999999999998765 6789999999999999999999999989999999999985 5788999999999999998


Q ss_pred             Cc-eeeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCC-ceeeeccCCCCCeEEEEEcCCC-CeEEEEecCC
Q psy4391         100 SG-KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDG  175 (231)
Q Consensus       100 ~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg  175 (231)
                      .. ..-..++ ..+.|-.+.|+|.. ..++++..||+|+-+|+|.. +++..+.+|.++|+++++++.- .++++++.|+
T Consensus       318 ~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~  396 (463)
T KOG0270|consen  318 DPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK  396 (463)
T ss_pred             CccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence            42 2222333 24557788999865 45677789999999999975 8899999999999999998754 4678899999


Q ss_pred             eEEEEeCCCCceeeeeec-CCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCCCCC
Q psy4391         176 LCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSYPCLPK  231 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~~g~-~l~~~s~d~~v~vwd~~~~~~~  231 (231)
                      .+++|++..-........ -.-....+.++.|+-. +++.|+..+.++|||.+.+-|+
T Consensus       397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            999998865332111100 0111244566677654 5677778889999999877653

>KOG2048|consensus

Probab=99.90  E-value=8.5e-21  Score=148.95  Aligned_cols=199  Identities=25%  Similarity=0.400  Sum_probs=162.1

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEE-EEEecc-cccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGH-KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      ..+.|.+++|+.+.+.||.+-.+|.|.+|+....-.. ..+.++ ...+.+++|++. ..|.+.+.+|.|.-||+.+.+.
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~  102 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQ  102 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCce
Confidence            4578999999999999999999999999999765443 345544 456999999965 4578889999999999999999


Q ss_pred             eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceee--eccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      ........+.+++++.+|.+..++.|+.||.+..++...+....  .+....+.+.++.|+|++..+++|+.||.|++||
T Consensus       103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd  182 (691)
T KOG2048|consen  103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD  182 (691)
T ss_pred             eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence            88888888999999999999999999999988888887766433  3445568899999999999999999999999999


Q ss_pred             CCCCceeeeeec-------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         182 TASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       182 ~~~~~~~~~~~~-------~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ...+..+.....       ....-|.++.+-.+ ..+++|..-|.|.+||..
T Consensus       183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~  233 (691)
T KOG2048|consen  183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSI  233 (691)
T ss_pred             cCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEccc
Confidence            998877662211       12233556666545 468999999999999973

>KOG4328|consensus

Probab=99.90  E-value=5.1e-22  Score=149.45  Aligned_cols=201  Identities=19%  Similarity=0.302  Sum_probs=161.0

Q ss_pred             ccccceEEEEECCCCC--EEEEEeCCCcEEEeecCC----CcEEEEEecccccEEEEEECCC-CCEEEEecCCCcEEEEe
Q psy4391          25 GHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~--~l~~~~~dg~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~~~d   97 (231)
                      -+.++|++++|+|...  ++++|...|.|=+||..+    ......+..|..+|..+.|+|. ...+++.+-||+|++-|
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D  263 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD  263 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence            4788999999999654  778899999999999842    2234567788899999999994 46789999999999999


Q ss_pred             CCCcee--eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce-eeeccCCCCCeEEEEEcCCC-CeEEEEec
Q psy4391          98 LSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFNRDG-SLIVSSSY  173 (231)
Q Consensus        98 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~  173 (231)
                      +++...  +.........+..+.++.+...++.+..=|.+.+||++++.. ...+..|...|..++++|.. .+|++++.
T Consensus       264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~  343 (498)
T KOG4328|consen  264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL  343 (498)
T ss_pred             ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence            987543  223333445566778888887788887777999999998765 67777888899999999965 57889999


Q ss_pred             CCeEEEEeCCCCceeee---eecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         174 DGLCRIWDTASGQCLKT---LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~---~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      |++.++||++.......   -...+...|.+..|||+|-.|++.+.|+.|+|||.
T Consensus       344 D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  344 DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            99999999986543332   12356678999999999988999999999999997

>KOG0646|consensus

Probab=99.90  E-value=9.3e-22  Score=148.30  Aligned_cols=185  Identities=25%  Similarity=0.452  Sum_probs=154.5

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCcEEEeecC---------CCcEEEEEecccccEEEEEECCC--CCEEEEecCCC
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---------DGKFEKTISGHKLGISDVAWSSD--SRLLVSGSDDK   91 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~---------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g   91 (231)
                      +.+|-..|+++.|+-||.+|++|+.||.|.+|.+.         +.+....+..|..+|+++...+.  ..++++++.|.
T Consensus       119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~  198 (476)
T KOG0646|consen  119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR  198 (476)
T ss_pred             HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence            45788999999999999999999999999999852         23456678889999999988764  35799999999


Q ss_pred             cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc----------------eeeeccCCCC-
Q psy4391          92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK----------------CLKTLPAHSD-  154 (231)
Q Consensus        92 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~----------------~~~~~~~~~~-  154 (231)
                      ++++||+..+..+..+.. ...+.++..+|.++.++.|+.+|.|.+.++....                .+..+.+|.+ 
T Consensus       199 t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~  277 (476)
T KOG0646|consen  199 TIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE  277 (476)
T ss_pred             eEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC
Confidence            999999999988877753 5668899999999999999999999988764322                2344566766 


Q ss_pred             -CeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC
Q psy4391         155 -PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK  209 (231)
Q Consensus       155 -~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~  209 (231)
                       +|+|++++-||..|++|+.||.++|||+.+.++++++.. ..++|+.+.+.|-.+
T Consensus       278 ~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~-~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  278 SAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT-SKGPVTNLQINPLER  332 (476)
T ss_pred             cceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh-hccccceeEeecccc
Confidence             999999999999999999999999999999998887754 456788888866433

>KOG1408|consensus

Probab=99.89  E-value=6.1e-22  Score=156.74  Aligned_cols=199  Identities=23%  Similarity=0.425  Sum_probs=167.3

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECC---CCCEEEEecCCCcEEEEeCCCc-
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS---DSRLLVSGSDDKTLKIWELSSG-  101 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~g~i~~~d~~~~-  101 (231)
                      -.-.+.+++.+|+|++||+|..-|.+++|++.+.+....+..|...|.++.++.   ..++||+++.|+.|.+||.... 
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence            345799999999999999999999999999988888888889999999999974   2467899999999999997531 


Q ss_pred             eeeeeecCCC-------------------------------------------------cceEEEEECCCCCEEEEeecC
Q psy4391         102 KCLKTLKGHS-------------------------------------------------NYVFCCNFNPQSNLIVSGSFD  132 (231)
Q Consensus       102 ~~~~~~~~~~-------------------------------------------------~~v~~~~~~~~~~~l~~~~~d  132 (231)
                      ..+..+.+|.                                                 ..+..+++.|..+++++++.|
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD  617 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD  617 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence            1111121111                                                 234567788888999999999


Q ss_pred             CcEEEEECCCCceeeecc---CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC
Q psy4391         133 ESVRIWDVRTGKCLKTLP---AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK  209 (231)
Q Consensus       133 ~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~  209 (231)
                      +.|++||+++++..+.++   .|++....+...|.|.|+++.+.|.++.++|..+++++.....+ ...|+.+.|.+|-+
T Consensus       618 rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH-sE~VTG~kF~nDCk  696 (1080)
T KOG1408|consen  618 RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH-SEAVTGVKFLNDCK  696 (1080)
T ss_pred             cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc-chheeeeeecccch
Confidence            999999999999888876   34566777889999999999999999999999999999887654 45789999999999


Q ss_pred             EEEEEeCCCeEEEEeC
Q psy4391         210 YILAATLDNTLKLWDS  225 (231)
Q Consensus       210 ~l~~~s~d~~v~vwd~  225 (231)
                      .|++.+.||.|.||..
T Consensus       697 HlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  697 HLISVSGDGCIFVWKL  712 (1080)
T ss_pred             hheeecCCceEEEEEC
Confidence            9999999999999973

>KOG2048|consensus

Probab=99.89  E-value=1.5e-20  Score=147.58  Aligned_cols=213  Identities=24%  Similarity=0.379  Sum_probs=174.2

Q ss_pred             CCCccceeEEeecccc-cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC
Q psy4391          12 NPKPNYVLKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD   90 (231)
Q Consensus        12 ~~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   90 (231)
                      ++..++.++..+.++. +.|.+++|++ +.+|++.+.+|.|..||..+.+....+....+.+++++.+|.+..++.+++|
T Consensus        53 N~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcdd  131 (691)
T KOG2048|consen   53 NLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDD  131 (691)
T ss_pred             ccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCC
Confidence            4566777777777765 6799999994 5566777889999999999999999988888899999999999999999999


Q ss_pred             CcEEEEeCCCcee--eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec-----cC---CCCCeEEEE
Q psy4391          91 KTLKIWELSSGKC--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-----PA---HSDPVSAVH  160 (231)
Q Consensus        91 g~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~---~~~~v~~~~  160 (231)
                      |.+..++...+..  .+.+..+.+.+.++.|+|++..+++|+.||.|++||...++.+...     ..   ..-.|.++.
T Consensus       132 Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~  211 (691)
T KOG2048|consen  132 GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVL  211 (691)
T ss_pred             ceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEE
Confidence            9887777766543  2344556788999999999999999999999999999998876622     11   123467777


Q ss_pred             EcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         161 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       161 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      |..+ ..+++|...|+|.+||...+..++....+ ...|.+++.++++.+|++++.|++|--|...+
T Consensus       212 ~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~  276 (691)
T KOG2048|consen  212 FLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNEDRVFSAGVDPKIIQYSLTT  276 (691)
T ss_pred             Eeec-CcEEEecCCceEEEEcccCcchhhhhhhh-hcceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence            7754 46889999999999999999877766544 45688999999999999999999988887544

>KOG0301|consensus

Probab=99.89  E-value=1.3e-21  Score=153.97  Aligned_cols=199  Identities=26%  Similarity=0.475  Sum_probs=169.0

Q ss_pred             EeecccccceEE-EEECC-CCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          21 FTLAGHTKAVSS-VKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        21 ~~~~~h~~~i~~-~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ..+.+|.+-|.. ++|.+ ++-++++|+.|+.+.+|..........+.+|...|.++....++. +++|+-|.++++|..
T Consensus        51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~  129 (745)
T KOG0301|consen   51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI  129 (745)
T ss_pred             eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence            456677777777 88876 444689999999999999998889999999999999998777776 899999999999987


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      .  ++...+++|...|.++..-|++ .++||+.|..|++|.-  ++.++.+.+|.+.|+.+++-+++ .+++++.||.|+
T Consensus       130 ~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir  203 (745)
T KOG0301|consen  130 G--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIR  203 (745)
T ss_pred             h--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEE
Confidence            4  4555688999999999888887 8999999999999985  77889999999999999999765 477999999999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~  228 (231)
                      +|++ +++.+.+.. .+..-+.++...+++..+++++.|++++||+--.|
T Consensus       204 ~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~  251 (745)
T KOG0301|consen  204 LWDL-DGEVLLEMH-GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDEC  251 (745)
T ss_pred             EEec-cCceeeeee-ccceEEEEEEecCCCCeEEEecCCceEEEeecCce
Confidence            9999 566666554 34456788888888899999999999999986544

>KOG2106|consensus

Probab=99.89  E-value=2.5e-20  Score=142.20  Aligned_cols=199  Identities=19%  Similarity=0.342  Sum_probs=156.3

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc-----------E-----------------------------EE
Q psy4391          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------F-----------------------------EK   63 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-----------~-----------------------------~~   63 (231)
                      ..|.+.|.++....+|.+|- |+.|..|..||..-.+           .                             ..
T Consensus       284 ~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~  362 (626)
T KOG2106|consen  284 HAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL  362 (626)
T ss_pred             eecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence            38999999999999999876 9999999999832100           0                             01


Q ss_pred             EEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCC
Q psy4391          64 TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG  143 (231)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  143 (231)
                      ...+|......++.+|+.+.+++++.|+.+++|+  ..+...... ...+..++.|+|.| .+|.|...|...+.|.++.
T Consensus       363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~  438 (626)
T KOG2106|consen  363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ  438 (626)
T ss_pred             EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccc
Confidence            1123555667788899999999999999999999  223322222 23557789999999 9999999999999999987


Q ss_pred             ceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceee-eeecCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q psy4391         144 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (231)
Q Consensus       144 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~v  222 (231)
                      ..+..... ..++++++|+|+|.+||.|+.|+.|++|.+..+.... .......++|..+.||+|+++|.+.+.|-.|..
T Consensus       439 ~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLy  517 (626)
T KOG2106|consen  439 DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILY  517 (626)
T ss_pred             eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEE
Confidence            66555444 7899999999999999999999999999887554333 333334488999999999999999999999999


Q ss_pred             EeCCCC
Q psy4391         223 WDSYPC  228 (231)
Q Consensus       223 wd~~~~  228 (231)
                      |.+..|
T Consensus       518 W~~~~~  523 (626)
T KOG2106|consen  518 WKPSEC  523 (626)
T ss_pred             EccccC
Confidence            965443

>KOG4283|consensus

Probab=99.88  E-value=2.7e-21  Score=138.59  Aligned_cols=161  Identities=29%  Similarity=0.524  Sum_probs=134.2

Q ss_pred             ccccceEEEEECC-CCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECC---CCCEEEEecCCCcEEEEeCCC
Q psy4391          25 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS---DSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        25 ~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      +|+-.|.++.|-| |.-.+.+++-|..+++||..+.+....++- ...|.+-+|+|   ....||+|..+-.|+++|+..
T Consensus        99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S  177 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS  177 (397)
T ss_pred             cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence            6888999999999 444777889999999999987766655553 34677777887   345788999999999999999


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCE-EEEeecCCcEEEEECCCC-cee--------------eeccCCCCCeEEEEEcCC
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVRTG-KCL--------------KTLPAHSDPVSAVHFNRD  164 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~-~~~--------------~~~~~~~~~v~~~~~~~~  164 (231)
                      +...+.+.+|.+.|.++.|+|...+ |++|+.||.|++||++.. .+.              +.-.+|.+.+..++|+.+
T Consensus       178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd  257 (397)
T KOG4283|consen  178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD  257 (397)
T ss_pred             CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc
Confidence            9999999999999999999998765 688999999999999854 121              223467788999999999


Q ss_pred             CCeEEEEecCCeEEEEeCCCCc
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQ  186 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~  186 (231)
                      +.++++++.|..+++|+..+|+
T Consensus       258 ~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  258 ARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             chhhhhccCccceEEeecccCc
Confidence            9999999999999999987764

>KOG1274|consensus

Probab=99.88  E-value=7.4e-21  Score=153.83  Aligned_cols=194  Identities=22%  Similarity=0.360  Sum_probs=161.5

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      -+-++..++++.+|+++|+|+.|-.|++-+..+......+.+|.++|.++.++|++++||+.+.||.|++||+.++....
T Consensus        95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~  174 (933)
T KOG1274|consen   95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSK  174 (933)
T ss_pred             eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhh
Confidence            35578999999999999999999999999999988899999999999999999999999999999999999999887665


Q ss_pred             eecC-------C-CcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccC--CCCCeEEEEEcCCCCeEEEEecCC
Q psy4391         106 TLKG-------H-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA--HSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus       106 ~~~~-------~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                      .+..       . ...+..++|+|++..++....|+.|++|+.........+..  +...+..++|+|+|+|||+++.||
T Consensus       175 tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  175 TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCC
Confidence            5542       1 23456689999999999999999999999988876555532  334488999999999999999999


Q ss_pred             eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      .|.|||..+.+.     ......|.+++|.|+..-+-.....|..-+|-
T Consensus       255 ~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~  298 (933)
T KOG1274|consen  255 QILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGTLGVSP  298 (933)
T ss_pred             cEEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccccccCh
Confidence            999999987331     33456788999999988776666666555543

>KOG0771|consensus

Probab=99.88  E-value=2.6e-21  Score=144.28  Aligned_cols=193  Identities=22%  Similarity=0.352  Sum_probs=153.3

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeec--
Q psy4391          31 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK--  108 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~--  108 (231)
                      .+++|+.+|..+++++.||.+|+|+............|...|.++.|+|||++|++.+.| ..++|+..++..+....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            689999999999999999999999976666666677788899999999999999999999 99999999986554443  


Q ss_pred             CCCcceEEEEECCCC---C--EEEEeecCCcEEEEECCCCce-----eeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         109 GHSNYVFCCNFNPQS---N--LIVSGSFDESVRIWDVRTGKC-----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       109 ~~~~~v~~~~~~~~~---~--~l~~~~~d~~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      ........|.|+.++   .  +.+.-...+.|..||+.....     ..+.......|++++.+++|++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            222345567787766   2  233334456677766543221     111122234799999999999999999999999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      +++..+.+.++.....|..-|+.+.|+||.++++..+.|..++|..
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence            9999998888887777888899999999999999999999888876

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=6.5e-19  Score=134.14  Aligned_cols=196  Identities=16%  Similarity=0.209  Sum_probs=145.0

Q ss_pred             cceEEEEECCCCCEE-EEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEe-cCCCcEEEEeCCCceeee
Q psy4391          28 KAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG-SDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~g~i~~~d~~~~~~~~  105 (231)
                      ..+.+++|+|+++.+ ++++.++.+++|+..+++....+..+. .+..++|+|+++.++++ ..++.+++||+.+.+.+.
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~  109 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLA  109 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence            346789999999976 566788999999998887766665433 35678999999977654 568999999999887766


Q ss_pred             eecCCCcceEEEEECCCCCEEEEeecCC-cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCeEEEEeCC
Q psy4391         106 TLKGHSNYVFCCNFNPQSNLIVSGSFDE-SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTA  183 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~v~d~~  183 (231)
                      .+... ..+..+.++|++.+++++..++ .+.+||.++++....... ...+..++|+|++++++++ ..++.+.+||+.
T Consensus       110 ~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~  187 (300)
T TIGR03866       110 EIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVA  187 (300)
T ss_pred             EeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence            66532 3356789999999999988765 467789988776554433 2345678999999988654 468999999999


Q ss_pred             CCceeeeeecCC------CCCeEEEEECCCCCEEEEE-eCCCeEEEEeCC
Q psy4391         184 SGQCLKTLIDDD------NPPVSFVKFSPNGKYILAA-TLDNTLKLWDSY  226 (231)
Q Consensus       184 ~~~~~~~~~~~~------~~~i~~~~~s~~g~~l~~~-s~d~~v~vwd~~  226 (231)
                      +++.+..+....      ......++|+|+|++++++ +.++.+.+||..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       188 TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence            887666543211      1112357899999986554 456789999964

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1524|consensus

Probab=99.87  E-value=3e-21  Score=148.32  Aligned_cols=185  Identities=25%  Similarity=0.407  Sum_probs=149.5

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      ..+..|.+.|.+-.|+|||.-|+++++||.|++|.- ++.....+.....+|.+++|.|+.+.++.+. .+.+.+-.+.-
T Consensus        98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~  175 (737)
T KOG1524|consen   98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAA  175 (737)
T ss_pred             hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeeccc
Confidence            345679999999999999999999999999999986 4544444555567899999999988877664 45676666665


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEE
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~  180 (231)
                      ...+..++.|.+-+.++.|++..+++++|++|-..++||.. |+.+..-.+|+.+|++++|+|+ +.++.++.+ +++  
T Consensus       176 n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R--  250 (737)
T KOG1524|consen  176 NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR--  250 (737)
T ss_pred             ccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eee--
Confidence            55667788999999999999999999999999999999986 5666777889999999999999 666666532 222  


Q ss_pred             eCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q psy4391         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (231)
Q Consensus       181 d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~v  222 (231)
                                +.......|..++||+||..+++|+..|.+-+
T Consensus       251 ----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  251 ----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence                      23344556788999999999999999997754

>KOG1063|consensus

Probab=99.87  E-value=8.3e-21  Score=149.45  Aligned_cols=205  Identities=21%  Similarity=0.407  Sum_probs=160.7

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCC-----cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEE
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~   95 (231)
                      ..+.||.-.|.+++.+|+|+++|++.+..     .|++|+..+-...+.+.+|...|+.++|+||+++|++.++|+++.+
T Consensus       519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl  598 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL  598 (764)
T ss_pred             HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence            45679999999999999999999987643     5899998887777889999999999999999999999999999999


Q ss_pred             EeCCCce----eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCC--ceeee--ccCCCCCeEEEEEcCC---
Q psy4391          96 WELSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG--KCLKT--LPAHSDPVSAVHFNRD---  164 (231)
Q Consensus        96 ~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~--~~~~~~~v~~~~~~~~---  164 (231)
                      |......    .....+.|..-|.++.|+|++.+++|+++|..|++|.....  +.+..  ...+..+|+++++.|-   
T Consensus       599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~  678 (764)
T KOG1063|consen  599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHN  678 (764)
T ss_pred             eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccc
Confidence            9875321    22336678888999999999999999999999999998877  44444  2356778999998762   


Q ss_pred             --CCeEEEEecCCeEEEEeCCCCceee-----e---ee---cCCCCCeEEEEECCC----------CCEEEEEeCCCeEE
Q psy4391         165 --GSLIVSSSYDGLCRIWDTASGQCLK-----T---LI---DDDNPPVSFVKFSPN----------GKYILAATLDNTLK  221 (231)
Q Consensus       165 --~~~l~~~~~dg~i~v~d~~~~~~~~-----~---~~---~~~~~~i~~~~~s~~----------g~~l~~~s~d~~v~  221 (231)
                        +..+++|-..|.|.+|.........     .   ..   ..+...|+.+.|.|.          ...|++|+.|..++
T Consensus       679 e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vr  758 (764)
T KOG1063|consen  679 EKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVR  758 (764)
T ss_pred             cccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeE
Confidence              3367888999999999854111000     0   00   112345777889865          23669999999999


Q ss_pred             EEeC
Q psy4391         222 LWDS  225 (231)
Q Consensus       222 vwd~  225 (231)
                      +++.
T Consensus       759 i~nv  762 (764)
T KOG1063|consen  759 IFNV  762 (764)
T ss_pred             Eeec
Confidence            9974

>KOG1034|consensus

Probab=99.87  E-value=8.1e-21  Score=137.80  Aligned_cols=201  Identities=21%  Similarity=0.456  Sum_probs=159.0

Q ss_pred             ccccceEEEEECCC---CC-EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCC-CEEEEecCCCcEEEEeCC
Q psy4391          25 GHTKAVSSVKFSPN---GE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        25 ~h~~~i~~~~~~~~---~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~d~~   99 (231)
                      .|.+....++|+-+   ++ ++|+|+.-|.|+|.|...++....+.+|...|.++.+.|+. +++++++.|..|++|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            36777888888753   33 78888999999999999999999999999999999999975 678999999999999999


Q ss_pred             Cceeeeeec---CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCcee-------------------------eec--
Q psy4391         100 SGKCLKTLK---GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL-------------------------KTL--  149 (231)
Q Consensus       100 ~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-------------------------~~~--  149 (231)
                      +..++..+.   +|.+.|.+++|+++|..|++++.|..+++|++...+..                         ..+  
T Consensus       167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst  246 (385)
T KOG1034|consen  167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST  246 (385)
T ss_pred             CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence            999988774   68899999999999999999999999999999732100                         000  


Q ss_pred             -cCCCC------------------------------------------------------CeE--EEEEcCCCCeEEEEe
Q psy4391         150 -PAHSD------------------------------------------------------PVS--AVHFNRDGSLIVSSS  172 (231)
Q Consensus       150 -~~~~~------------------------------------------------------~v~--~~~~~~~~~~l~~~~  172 (231)
                       ..|..                                                      .+.  ..+|+|-.++||.|.
T Consensus       247 ~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn  326 (385)
T KOG1034|consen  247 TDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN  326 (385)
T ss_pred             cccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence             00100                                                      011  123456667889999


Q ss_pred             cCCeEEEEeCCCCceee--eee-cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         173 YDGLCRIWDTASGQCLK--TLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       173 ~dg~i~v~d~~~~~~~~--~~~-~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +.|.+.+||++..+...  ++. ......|...+|+.||..|+..+.|+.|--||.
T Consensus       327 q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  327 QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            99999999998876531  121 223456888999999999999999999999985

>KOG2055|consensus

Probab=99.87  E-value=1.9e-20  Score=141.28  Aligned_cols=197  Identities=19%  Similarity=0.311  Sum_probs=158.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~  107 (231)
                      ..+.....++++++|+..+..|.|.+....++.....++- .+.|.+++|+.+++.|++++.+|.|.+||+....+++.+
T Consensus       304 ~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf  382 (514)
T KOG2055|consen  304 KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF  382 (514)
T ss_pred             chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence            4677888999999999999999999998888877776664 457899999999999999999999999999998888877


Q ss_pred             cCCCc-ceEEEEECCCCCEEEEeecCCcEEEEECCC------CceeeeccCCCCCeEEEEEcCCCCeEEEEec--CCeEE
Q psy4391         108 KGHSN-YVFCCNFNPQSNLIVSGSFDESVRIWDVRT------GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCR  178 (231)
Q Consensus       108 ~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~  178 (231)
                      ....+ .-+.++.++++.++|+|+..|.|.+||.++      .++++.+..-...|+.|+|+||.++||.++.  +..++
T Consensus       383 ~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalr  462 (514)
T KOG2055|consen  383 VDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALR  462 (514)
T ss_pred             eecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceE
Confidence            64322 235677889999999999999999999653      2344444444568999999999999987774  56788


Q ss_pred             EEeCCCCceeeeeecC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         179 IWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~--~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +..+.+......+...  .-..+++++|||.|-+||.|..+|+|.+|..
T Consensus       463 LVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  463 LVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             EEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence            8877765544443322  2235789999999999999999999999974

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=4.9e-19  Score=134.82  Aligned_cols=182  Identities=20%  Similarity=0.336  Sum_probs=140.4

Q ss_pred             CEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCceeeeeecCCCcceEEEE
Q psy4391          40 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCN  118 (231)
Q Consensus        40 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~  118 (231)
                      ..+++++.|+.+++||..+++....+..+. .+..++|+|+++.+ +++..++.|++||..+++....+..+.. +..+.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~   79 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA   79 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence            567888999999999998888777776543 46779999999876 5667789999999998887766654433 45678


Q ss_pred             ECCCCCEEEEe-ecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC-eEEEEeCCCCceeeeeecCCC
Q psy4391         119 FNPQSNLIVSG-SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQCLKTLIDDDN  196 (231)
Q Consensus       119 ~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~  196 (231)
                      ++|+++.++++ ..++.+++||+++++.+..+..+ ..+..++|+|++++++++..++ .+.+||..+++......... 
T Consensus        80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~-  157 (300)
T TIGR03866        80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ-  157 (300)
T ss_pred             ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC-
Confidence            99999877655 56889999999988776666432 3467899999999999888765 56778998877655443322 


Q ss_pred             CCeEEEEECCCCCEEEEEe-CCCeEEEEeCC
Q psy4391         197 PPVSFVKFSPNGKYILAAT-LDNTLKLWDSY  226 (231)
Q Consensus       197 ~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~  226 (231)
                       ....++|+|+|++|++++ .++.|.+||..
T Consensus       158 -~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~  187 (300)
T TIGR03866       158 -RPRFAEFTADGKELWVSSEIGGTVSVIDVA  187 (300)
T ss_pred             -CccEEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence             235689999999886554 58999999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0650|consensus

Probab=99.86  E-value=3.6e-20  Score=143.91  Aligned_cols=202  Identities=25%  Similarity=0.387  Sum_probs=152.8

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCC--EEEEecCCC-------
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR--LLVSGSDDK-------   91 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~g-------   91 (231)
                      ..++||++.|.++...|.|.+|++|+.||+|+||.+.++++++.+.- ...|.+++|+|.+.  .||++-.+.       
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            34579999999999999999999999999999999999988877653 34677777777544  233322111       


Q ss_pred             -------------------------cEEEEe-------------------------------------------------
Q psy4391          92 -------------------------TLKIWE-------------------------------------------------   97 (231)
Q Consensus        92 -------------------------~i~~~d-------------------------------------------------   97 (231)
                                               .+..|.                                                 
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ  552 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ  552 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence                                     122232                                                 


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeE
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  177 (231)
                      +........++...+.+.++.|+|...+++.++. ..|++||+-.+..++.+......+..++++|.|..|+.++.|+.+
T Consensus       553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~  631 (733)
T KOG0650|consen  553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKM  631 (733)
T ss_pred             cccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCee
Confidence            1111111111112344667889998888887665 679999999888888888888899999999999999999999999


Q ss_pred             EEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      ..||+.-+.........+...+..++|++.-.++++|+.||.+.||-
T Consensus       632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            99999876544444556667789999999999999999999999886

>KOG2106|consensus

Probab=99.86  E-value=2e-19  Score=137.32  Aligned_cols=190  Identities=24%  Similarity=0.457  Sum_probs=152.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce-----
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK-----  102 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~-----  102 (231)
                      ..|.|+.|.++|+. ++|..+|.|.||+..+.+..+....|.++|.+++...+|. |++|++|+.|..||-.-.+     
T Consensus       247 k~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~e  324 (626)
T KOG2106|consen  247 KFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETE  324 (626)
T ss_pred             eEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccccccccccc
Confidence            57999999999985 5789999999999977776666668999999999998887 5569999999999832110     


Q ss_pred             ------eee-----------------------------eecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceee
Q psy4391         103 ------CLK-----------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK  147 (231)
Q Consensus       103 ------~~~-----------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  147 (231)
                            .++                             ...+|.+....++.+|+.+.+++++.|+.+++|+  ..+...
T Consensus       325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w  402 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW  402 (626)
T ss_pred             CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE
Confidence                  011                             1123555666788899999999999999999999  334433


Q ss_pred             eccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         148 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       148 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ... ...++.++.|+|.| .+|.|...|...+.|.++...+..- .. ..+++.++|+|+|.+||.|+.|+.|.||-.
T Consensus       403 t~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~-~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~V  476 (626)
T KOG2106|consen  403 TKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH-TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRV  476 (626)
T ss_pred             EEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE-ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence            332 35688999999999 9999999999999999986544433 23 778999999999999999999999999963

>KOG0294|consensus

Probab=99.86  E-value=1.6e-19  Score=130.40  Aligned_cols=155  Identities=28%  Similarity=0.460  Sum_probs=127.9

Q ss_pred             EecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCC--EEEEeecCCcEEEEECCC
Q psy4391          65 ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVRT  142 (231)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~v~d~~~  142 (231)
                      +..|.+.+++++.+  +.++++|+.|.+|++||+.+......+-.|.+.++++.|.+.-.  .|++|+.||.|.+|+...
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~  116 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS  116 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence            45678889988874  78999999999999999998887888888999999999998765  899999999999999999


Q ss_pred             CceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q psy4391         143 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (231)
Q Consensus       143 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~v  222 (231)
                      ...+..+.+|.+.|+.++++|.+++.++.+.|+.+++||+-+++.-.........  ..+.|+|.|.+++.+.. +.|-+
T Consensus       117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a--t~v~w~~~Gd~F~v~~~-~~i~i  193 (362)
T KOG0294|consen  117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA--TLVSWSPQGDHFVVSGR-NKIDI  193 (362)
T ss_pred             eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc--eeeEEcCCCCEEEEEec-cEEEE
Confidence            9999999999999999999999999999999999999999888754443322222  33667777766655553 35555


Q ss_pred             Ee
Q psy4391         223 WD  224 (231)
Q Consensus       223 wd  224 (231)
                      |.
T Consensus       194 ~q  195 (362)
T KOG0294|consen  194 YQ  195 (362)
T ss_pred             Ee
Confidence            54

>KOG0647|consensus

Probab=99.86  E-value=1.6e-19  Score=129.82  Aligned_cols=189  Identities=25%  Similarity=0.360  Sum_probs=143.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCC--EEEEecCCCcEEEEeCCCce
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR--LLVSGSDDKTLKIWELSSGK  102 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~g~i~~~d~~~~~  102 (231)
                      .|.++|.+++|+.||..+++|+.|+.+++||+.++ ....+..|..+|..+.|-+...  .|++|+-|.+|+.||.+...
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            57899999999999999999999999999999888 5567778999999999987554  78999999999999998766


Q ss_pred             eeeeecCC-----------------------------------------CcceEEEEECCCCCEEEEeecCCcEEEEECC
Q psy4391         103 CLKTLKGH-----------------------------------------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVR  141 (231)
Q Consensus       103 ~~~~~~~~-----------------------------------------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  141 (231)
                      ++..+.-.                                         .-.+.+++...+....+.|+-+|++.+..+.
T Consensus       149 pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id  228 (347)
T KOG0647|consen  149 PVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID  228 (347)
T ss_pred             eeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC
Confidence            55443210                                         1123455555666666777778887777666


Q ss_pred             CCce--eeeccCCC---------CCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCE
Q psy4391         142 TGKC--LKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY  210 (231)
Q Consensus       142 ~~~~--~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  210 (231)
                      .+..  -..++.|.         .+|.+++|+|.-..|++++.||.+..||-.....+.... .+..+|++..|+.+|.+
T Consensus       229 ~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~-~~~qpItcc~fn~~G~i  307 (347)
T KOG0647|consen  229 DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE-THPQPITCCSFNRNGSI  307 (347)
T ss_pred             CCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC-cCCCccceeEecCCCCE
Confidence            5422  12222232         246789999999999999999999999987655554433 35568999999999998


Q ss_pred             EEEEe
Q psy4391         211 ILAAT  215 (231)
Q Consensus       211 l~~~s  215 (231)
                      +|-+.
T Consensus       308 faYA~  312 (347)
T KOG0647|consen  308 FAYAL  312 (347)
T ss_pred             EEEEe
Confidence            76543

>KOG4378|consensus

Probab=99.86  E-value=2.2e-20  Score=142.37  Aligned_cols=192  Identities=23%  Similarity=0.330  Sum_probs=158.8

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCC
Q psy4391          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHS  111 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~  111 (231)
                      |++......++++|+..+.|+|||.......+.++.|...|+.+.+.....+||+++..|.|.+..+.++.....+....
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s  163 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS  163 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence            44444455788999999999999998666666788899999999999999999999999999999999887777776443


Q ss_pred             -cceEEEEECCCCCE-EEEeecCCcEEEEECCCCceeee-ccCCCCCeEEEEEcCCC-CeEEEEecCCeEEEEeCCCCce
Q psy4391         112 -NYVFCCNFNPQSNL-IVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQC  187 (231)
Q Consensus       112 -~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~  187 (231)
                       ..+.-+.++|..+. |.+++.+|.|.+||++....+.. ...|..|...++|+|.. .+|++.+.|..|.+||.+..+.
T Consensus       164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s  243 (673)
T KOG4378|consen  164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS  243 (673)
T ss_pred             CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc
Confidence             34557889997664 56778999999999987665544 35788899999999965 4678899999999999998776


Q ss_pred             eeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       188 ~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ...+..  ..|.+.++|+++|.+|++|+..|.|..||.
T Consensus       244 ~~~l~y--~~Plstvaf~~~G~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  244 TDRLTY--SHPLSTVAFSECGTYLCAGNSKGELIAYDM  279 (673)
T ss_pred             cceeee--cCCcceeeecCCceEEEeecCCceEEEEec
Confidence            666543  457789999999999999999999999995

>KOG1036|consensus

Probab=99.85  E-value=2.8e-19  Score=128.77  Aligned_cols=191  Identities=20%  Similarity=0.287  Sum_probs=145.0

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      .+..|...|.++.+++....+++|+.|+.|++||.........+... ..|.++.  -.++.|++|+.+..+.+||+++.
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~--v~g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMD--VSGNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEe--ccCCEEEEeecCceEEEEEcccc
Confidence            34468999999999998889999999999999998764333333322 2565554  45788999999999999999875


Q ss_pred             eeeeeec--CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce----eeeccCCC---------CCeEEEEEcCCCC
Q psy4391         102 KCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC----LKTLPAHS---------DPVSAVHFNRDGS  166 (231)
Q Consensus       102 ~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~---------~~v~~~~~~~~~~  166 (231)
                      ....+.+  ...-.+.++++.|++.=.+.++-+|+|.+=.++..+.    ...+..|.         .||.+++|+|-..
T Consensus       166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~  245 (323)
T KOG1036|consen  166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG  245 (323)
T ss_pred             cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence            4332222  1234578899999888899999999988755544321    12233332         3789999999999


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC
Q psy4391         167 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~  216 (231)
                      .|++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||+++.
T Consensus       246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  246 TFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCCCeEEEEec
Confidence            9999999999999999988877666433 456889999999999999883

>KOG0270|consensus

Probab=99.85  E-value=9.6e-20  Score=136.81  Aligned_cols=193  Identities=24%  Similarity=0.403  Sum_probs=148.4

Q ss_pred             EEEEECC-------CCCEEEEEeCCCcEEEeecCCCcE---E------------------EEEecccccEEEEEECCC-C
Q psy4391          31 SSVKFSP-------NGEWLASSSADKLIKIWGAYDGKF---E------------------KTISGHKLGISDVAWSSD-S   81 (231)
Q Consensus        31 ~~~~~~~-------~~~~l~~~~~dg~i~i~~~~~~~~---~------------------~~~~~~~~~v~~~~~~~~-~   81 (231)
                      .|++|..       .|+++|.|+.+-.|.|||+.-...   .                  ....+|...|.++.|.-. .
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            4666643       356999999999999999742110   0                  011246666777888754 4


Q ss_pred             CEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCcee-eeccCCCCCeEEE
Q psy4391          82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCL-KTLPAHSDPVSAV  159 (231)
Q Consensus        82 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~v~~~  159 (231)
                      ..||+|+.|.+|.+||+.++++...+..|...|.++.|+|. ..+|++|+.|+++.+.|+|..... ..+. ..+.|..+
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv  335 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKV  335 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEE
Confidence            56899999999999999999999999989999999999985 578999999999999999953322 2222 24678899


Q ss_pred             EEcCCCC-eEEEEecCCeEEEEeCCCC-ceeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeC
Q psy4391         160 HFNRDGS-LIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDS  225 (231)
Q Consensus       160 ~~~~~~~-~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s~d~~v~vwd~  225 (231)
                      +|.|... .++++..||.++-+|++.. +++.++.. |..+|+.+.+++.-. +|++++.|+.|++|+.
T Consensus       336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A-Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~  403 (463)
T KOG0270|consen  336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA-HDDEISGLSVNIQTPGLLSTASTDKVVKLWKF  403 (463)
T ss_pred             EecCCCceeEEEecCCceEEeeecCCCCCceeEEEe-ccCCcceEEecCCCCcceeeccccceEEEEee
Confidence            9998654 5677888999999999976 55555544 455899999988765 6788899999999996

>KOG1063|consensus

Probab=99.85  E-value=1.4e-19  Score=142.65  Aligned_cols=211  Identities=24%  Similarity=0.438  Sum_probs=161.8

Q ss_pred             ccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcE-EEEE---ecccccEEEEEECCCCCEEEEecCC
Q psy4391          15 PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTI---SGHKLGISDVAWSSDSRLLVSGSDD   90 (231)
Q Consensus        15 ~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~   90 (231)
                      ..+...-...||.+.|..++|+|.|++|++.+.|-+-|+|-....+. -.++   .-|...++++++-+..-.+++|.+.
T Consensus       349 ~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE  428 (764)
T KOG1063|consen  349 TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADE  428 (764)
T ss_pred             cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccc
Confidence            34445555679999999999999999999999999999986541111 1112   2355678888888755567788888


Q ss_pred             CcEEEEeCCC-------------------------------------------cee------------------------
Q psy4391          91 KTLKIWELSS-------------------------------------------GKC------------------------  103 (231)
Q Consensus        91 g~i~~~d~~~-------------------------------------------~~~------------------------  103 (231)
                      ..+|+|+...                                           +..                        
T Consensus       429 KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq  508 (764)
T KOG1063|consen  429 KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ  508 (764)
T ss_pred             eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence            8888887410                                           000                        


Q ss_pred             ---------eeeecCCCcceEEEEECCCCCEEEEeecCC-----cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEE
Q psy4391         104 ---------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus       104 ---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  169 (231)
                               ++.+.+|.-.+.+++.+|+++++|+++...     .|++|+..+......+..|.-.|+.++|+||+++|+
T Consensus       509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LL  588 (764)
T KOG1063|consen  509 LQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLL  588 (764)
T ss_pred             HHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEE
Confidence                     011235667789999999999999997654     489999998888888999999999999999999999


Q ss_pred             EEecCCeEEEEeCCCCceeee---eecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         170 SSSYDGLCRIWDTASGQCLKT---LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~---~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +.+.|.++.+|..........   ....+...|....|+|++.+++++|.|.+|+||.-
T Consensus       589 svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  589 SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             EeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence            999999999998644322111   13345666888999999999999999999999974

>KOG0642|consensus

Probab=99.85  E-value=1.4e-19  Score=139.62  Aligned_cols=211  Identities=23%  Similarity=0.407  Sum_probs=170.8

Q ss_pred             cceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCC--------CcEEEEEecccccEEEEEECCCCCEEEEe
Q psy4391          16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--------GKFEKTISGHKLGISDVAWSSDSRLLVSG   87 (231)
Q Consensus        16 ~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   87 (231)
                      .+.+++++..|...|+.+.|.+....|++|+.||.+.+|+++.        -+....+.+|.++|.+++..+++..+++|
T Consensus       283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg  362 (577)
T KOG0642|consen  283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG  362 (577)
T ss_pred             ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence            3678889999999999999999999999999999999999832        13456778999999999999999999999


Q ss_pred             cCCCcEEEEeCCCc----------eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec--------
Q psy4391          88 SDDKTLKIWELSSG----------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL--------  149 (231)
Q Consensus        88 ~~~g~i~~~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--------  149 (231)
                      +.||+|+.|++...          .....+.+|.+.++.+++++....|++++.||++++|+...... ..+        
T Consensus       363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence            99999999966421          12345668899999999999999999999999999998754332 000        


Q ss_pred             -------------------------------------c--CC-----CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCC
Q psy4391         150 -------------------------------------P--AH-----SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG  185 (231)
Q Consensus       150 -------------------------------------~--~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  185 (231)
                                                           .  +.     ...+.-+.++|.+...+++..|+.|+++|..++
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~  521 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG  521 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence                                                 0  00     012344667788888899999999999999999


Q ss_pred             ceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q psy4391         186 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       186 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~  228 (231)
                      +.+.....+ ...++++++.|+|.+|++++.|+++++|...-+
T Consensus       522 ~~l~s~~a~-~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  522 KILHSMVAH-KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ccchheeec-cceecceeecCCCceEEeecCCceeehhhccch
Confidence            887766543 346889999999999999999999999987433

>KOG1009|consensus

Probab=99.84  E-value=1.8e-19  Score=134.05  Aligned_cols=196  Identities=29%  Similarity=0.488  Sum_probs=153.2

Q ss_pred             eEEeecccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCC---------cEEEEEecccccEEEEEECCCCCEEEEec
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDG---------KFEKTISGHKLGISDVAWSSDSRLLVSGS   88 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   88 (231)
                      ++.+...| .++..+.|.++.. .+++|+.|..|++|.+...         .....+..|...|+.+.|+|+|+.+++|+
T Consensus         6 ~ei~wH~~-~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~   84 (434)
T KOG1009|consen    6 IEISWHDH-EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG   84 (434)
T ss_pred             eEEEecCC-CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence            33444334 5899999999777 9999999999999986422         13345678889999999999999999999


Q ss_pred             CCCcEEEEeCC--------C--------ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC
Q psy4391          89 DDKTLKIWELS--------S--------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH  152 (231)
Q Consensus        89 ~~g~i~~~d~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  152 (231)
                      ++|.+.+|-..        +        ....+.+.+|...+..++|+|+++++++++.|..+++||+..|+....+..|
T Consensus        85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh  164 (434)
T KOG1009|consen   85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH  164 (434)
T ss_pred             CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence            99999999765        2        1234456678888999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeee---------cCCCCC-------------eEEEEECCCCCE
Q psy4391         153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI---------DDDNPP-------------VSFVKFSPNGKY  210 (231)
Q Consensus       153 ~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---------~~~~~~-------------i~~~~~s~~g~~  210 (231)
                      ...+..++|.|-++++++-+.|...+.+.+...+......         .+....             ...++|+|+|.+
T Consensus       165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l  244 (434)
T KOG1009|consen  165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL  244 (434)
T ss_pred             ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence            9999999999999999998888866666654332221110         011111             123689999998


Q ss_pred             EEEEe
Q psy4391         211 ILAAT  215 (231)
Q Consensus       211 l~~~s  215 (231)
                      |++.+
T Consensus       245 lvtPa  249 (434)
T KOG1009|consen  245 LVTPA  249 (434)
T ss_pred             EEccc
Confidence            88765

>KOG0307|consensus

Probab=99.83  E-value=4.8e-20  Score=152.26  Aligned_cols=204  Identities=24%  Similarity=0.370  Sum_probs=160.8

Q ss_pred             EeecccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcEEEEEe--cccccEEEEEECCCCC-EEEEecCCCcEEEE
Q psy4391          21 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSR-LLVSGSDDKTLKIW   96 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~   96 (231)
                      .+...|++.|..+.|++.+. +||+|+.||.|.|||+..........  .....|..++|...-+ .|++++.+|.+.+|
T Consensus       110 a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iW  189 (1049)
T KOG0307|consen  110 ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIW  189 (1049)
T ss_pred             hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceec
Confidence            45568999999999999665 99999999999999986543322221  1245689999987544 56888889999999


Q ss_pred             eCCCceeeeeecCCCc--ceEEEEECCCC-CEEEEeecCC---cEEEEECCCCc-eeeeccCCCCCeEEEEEcCCC-CeE
Q psy4391          97 ELSSGKCLKTLKGHSN--YVFCCNFNPQS-NLIVSGSFDE---SVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDG-SLI  168 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~~~~~d~---~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l  168 (231)
                      |++..+.+..+..+..  .+..+.|+|++ ..+++++.|.   .|.+||+|... .++.+..|...|.++.|.+.+ .++
T Consensus       190 Dlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~ll  269 (1049)
T KOG0307|consen  190 DLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLL  269 (1049)
T ss_pred             cccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhh
Confidence            9998877766655443  35678999986 4566665544   48999998654 456678999999999999865 888


Q ss_pred             EEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeC
Q psy4391         169 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDS  225 (231)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s~d~~v~vwd~  225 (231)
                      ++++.|+.+.+|+..+++.+..+.. .+..+..+.|.|... .+++++.||.|.||..
T Consensus       270 lSsgkD~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl  326 (1049)
T KOG0307|consen  270 LSSGKDNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSL  326 (1049)
T ss_pred             hcccCCCCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeee
Confidence            9999999999999999998888765 344567789999887 7788889999999985

>KOG0321|consensus

Probab=99.83  E-value=8.1e-19  Score=137.30  Aligned_cols=201  Identities=18%  Similarity=0.358  Sum_probs=145.3

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEE--EecccccEEEEEECCCC-CEEEEecCCCcEEEEeCCCc
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~d~~~~  101 (231)
                      .|...|..+.|.|....|++++-|.+++.||+.+.+....  +.+|...|.+++|.|.. ..+++|+.||.+.|||+...
T Consensus        98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n  177 (720)
T KOG0321|consen   98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN  177 (720)
T ss_pred             cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence            6899999999999555888999999999999988877655  78999999999999965 46789999999999998532


Q ss_pred             e--------------------e-------eeeecCCCcceEE---EEECCCCCEEEEeec-CCcEEEEECCCCceeee--
Q psy4391         102 K--------------------C-------LKTLKGHSNYVFC---CNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKT--  148 (231)
Q Consensus       102 ~--------------------~-------~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~--  148 (231)
                      .                    +       .+..+.+...+.+   ..+..|...||+++. |+.|+|||++.......  
T Consensus       178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e  257 (720)
T KOG0321|consen  178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE  257 (720)
T ss_pred             chhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccC
Confidence            1                    0       0111122222333   445567788888877 99999999997654322  


Q ss_pred             ------ccCC---CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce--eeeeecCCCCCe-EEEEECCCCCEEEEEeC
Q psy4391         149 ------LPAH---SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC--LKTLIDDDNPPV-SFVKFSPNGKYILAATL  216 (231)
Q Consensus       149 ------~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~i-~~~~~s~~g~~l~~~s~  216 (231)
                            +..+   ...+.++..+..|.+|++.+.|+.|..|++.....  +..+.......+ ..-..+||+.++++|+.
T Consensus       258 p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs  337 (720)
T KOG0321|consen  258 PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS  337 (720)
T ss_pred             CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC
Confidence                  1122   23567777888889998888899999999876432  122111111111 11236999999999999


Q ss_pred             CCeEEEEeC
Q psy4391         217 DNTLKLWDS  225 (231)
Q Consensus       217 d~~v~vwd~  225 (231)
                      |.++.+|..
T Consensus       338 d~~ayiw~v  346 (720)
T KOG0321|consen  338 DEQAYIWVV  346 (720)
T ss_pred             Ccceeeeee
Confidence            999999986

>KOG1445|consensus

Probab=99.83  E-value=1.9e-19  Score=141.18  Aligned_cols=204  Identities=19%  Similarity=0.352  Sum_probs=152.6

Q ss_pred             ccceEEEEECC-CCCEEEEEeCCCcEEEeecCCC-------cEEEEEecccccEEEEEECCC-CCEEEEecCCCcEEEEe
Q psy4391          27 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        27 ~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~~~d   97 (231)
                      ...|+.+.|.| |.+.||.++.||.|++|.+..+       .....++.|...|..+.|+|- ...|++++.|.+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            45689999999 7789999999999999998543       345567888899999999994 56788999999999999


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce-eeeccCC-CCCeEEEEEcCCCCeEEEEecC-
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-LKTLPAH-SDPVSAVHFNRDGSLIVSSSYD-  174 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-  174 (231)
                      +.+++....+.+|.+.|..++|+|+|+.+++.+.||+|++|+.+++.. +..-... ...-..+.|.-+|+++++.+.| 
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk  786 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK  786 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence            999988889999999999999999999999999999999999987653 2211111 1222456787899999888776 


Q ss_pred             ---CeEEEEeCCCCc--eeeeeecCCCCCeEEEEECCCCCE-EEEEeCCCeEEEEeCCCCCC
Q psy4391         175 ---GLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       175 ---g~i~v~d~~~~~--~~~~~~~~~~~~i~~~~~s~~g~~-l~~~s~d~~v~vwd~~~~~~  230 (231)
                         .+|.+||..+-.  .+.+......+.+..-.+++|... +++|-.|..|.+|...+-.|
T Consensus       787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence               468888876432  233322222222222345666554 45566788999998644433

>KOG2919|consensus

Probab=99.83  E-value=3.3e-18  Score=124.27  Aligned_cols=199  Identities=21%  Similarity=0.430  Sum_probs=150.8

Q ss_pred             cceEEEEEC-------CCCCEEEEEeCCCcEEEeecCCCcEEEEEeccc-----ccEEEEEECCCCCEEEEecCCCcEEE
Q psy4391          28 KAVSSVKFS-------PNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAWSSDSRLLVSGSDDKTLKI   95 (231)
Q Consensus        28 ~~i~~~~~~-------~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~g~i~~   95 (231)
                      ..|....|-       |+..++++.+.+.-|++||..+++....+....     ....+++|+|||.+|++| ....|++
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirv  183 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRV  183 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEE
Confidence            456666664       677788999999999999999998877765422     245689999999998776 4569999


Q ss_pred             EeCC-Ccee--eee-e----cCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCC
Q psy4391          96 WELS-SGKC--LKT-L----KGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS  166 (231)
Q Consensus        96 ~d~~-~~~~--~~~-~----~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  166 (231)
                      +|+. .+..  +.. +    .+..+.+.+++++|.. ..++.|+...++-+|.-..+.++..+..|.+.|+.++|.++|+
T Consensus       184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn  263 (406)
T KOG2919|consen  184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN  263 (406)
T ss_pred             eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC
Confidence            9983 3321  111 1    1335667889999965 4889999988888888778888888899999999999999999


Q ss_pred             eEEEEec-CCeEEEEeCCCCce-eeeeecCC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         167 LIVSSSY-DGLCRIWDTASGQC-LKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       167 ~l~~~~~-dg~i~v~d~~~~~~-~~~~~~~~--~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .|++|+. |-.|..||++..+. +..+..+-  ...-......|+|++|++|+.||.|++||...
T Consensus       264 ~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  264 KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            9999886 56899999986542 22222211  12223356789999999999999999999743

>KOG1273|consensus

Probab=99.83  E-value=1.4e-18  Score=125.76  Aligned_cols=202  Identities=20%  Similarity=0.362  Sum_probs=148.1

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCC-EEEEecCCCcEEEEeCCC
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~d~~~  100 (231)
                      .+.+|..+|++++||++|++|++++.|..+.+||+..+...+.+. ...+|....|+|..+ ..++.-.+..-.+.++..
T Consensus        60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~  138 (405)
T KOG1273|consen   60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD  138 (405)
T ss_pred             hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence            456899999999999999999999999999999999998777765 457899999999543 333333344445555544


Q ss_pred             ceeeeeecC--C---CcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC-CCeEEEEEcCCCCeEEEEecC
Q psy4391         101 GKCLKTLKG--H---SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus       101 ~~~~~~~~~--~---~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      +... .+..  .   +....+..|++.|+++++|...|.+.++|..+.+++..++... ..|..+.++..|+.|+.-+.|
T Consensus       139 ~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD  217 (405)
T KOG1273|consen  139 PKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD  217 (405)
T ss_pred             Ccee-eccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC
Confidence            2211 1110  0   1111123478899999999999999999999998887776554 678899999999999999999


Q ss_pred             CeEEEEeCCCC-------ce--eeeeec-CCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         175 GLCRIWDTASG-------QC--LKTLID-DDNPPVSFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       175 g~i~v~d~~~~-------~~--~~~~~~-~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      ..|+.|++..-       +.  .+++.. -...+...++||.+|.|+.+++. ...+.||..
T Consensus       218 RvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~  279 (405)
T KOG1273|consen  218 RVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK  279 (405)
T ss_pred             ceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEec
Confidence            99999987631       11  111111 12334567899999999988885 458889975

>KOG0322|consensus

Probab=99.82  E-value=4.3e-19  Score=125.46  Aligned_cols=203  Identities=25%  Similarity=0.392  Sum_probs=147.5

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe-cccccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      |.+++|.+.++++.|..+++ |++|..-|.+.+|+..+.+....+. .+...++.+.-.|+ ..+.+-+.|+.+.+|++.
T Consensus         8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia   85 (323)
T KOG0322|consen    8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA   85 (323)
T ss_pred             eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence            44559999999999987666 7889999999999998887776666 34556788877786 457788899999999886


Q ss_pred             Cceeeee--e-------------------------c--------------------------CCCcceEEEEECCC-C--
Q psy4391         100 SGKCLKT--L-------------------------K--------------------------GHSNYVFCCNFNPQ-S--  123 (231)
Q Consensus       100 ~~~~~~~--~-------------------------~--------------------------~~~~~v~~~~~~~~-~--  123 (231)
                      .+..+..  +                         .                          ...+.+.+..+..+ +  
T Consensus        86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~  165 (323)
T KOG0322|consen   86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST  165 (323)
T ss_pred             CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence            4221100  0                         0                          00112223332221 1  


Q ss_pred             CEEEEeecCCcEEEEECCCCceee----------eccCCCC---------------------------------------
Q psy4391         124 NLIVSGSFDESVRIWDVRTGKCLK----------TLPAHSD---------------------------------------  154 (231)
Q Consensus       124 ~~l~~~~~d~~i~v~d~~~~~~~~----------~~~~~~~---------------------------------------  154 (231)
                      -+++.|-++|.+.+||+.++..+-          ....|..                                       
T Consensus       166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~  245 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK  245 (323)
T ss_pred             EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence            246678889999999998762111          0111111                                       


Q ss_pred             -------CeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         155 -------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       155 -------~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                             .+..+.+-||++.+|+++.|+.|+||.-++...+..+..+. ..+++++|+|+-..+|+++.|++|.+|+.|
T Consensus       246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs-agvn~vAfspd~~lmAaaskD~rISLWkLY  323 (323)
T KOG0322|consen  246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS-AGVNAVAFSPDCELMAAASKDARISLWKLY  323 (323)
T ss_pred             eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh-cceeEEEeCCCCchhhhccCCceEEeeecC
Confidence                   23456778999999999999999999999999888776544 789999999999999999999999999865

>KOG1445|consensus

Probab=99.82  E-value=1.1e-19  Score=142.59  Aligned_cols=191  Identities=19%  Similarity=0.412  Sum_probs=147.3

Q ss_pred             ECCCCCEEEE--EeCCCcEEEeecCCC-cEE----EEEecccccEEEEEECC-CCCEEEEecCCCcEEEEeCCCc-----
Q psy4391          35 FSPNGEWLAS--SSADKLIKIWGAYDG-KFE----KTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELSSG-----  101 (231)
Q Consensus        35 ~~~~~~~l~~--~~~dg~i~i~~~~~~-~~~----~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~-----  101 (231)
                      |..+.+++|.  ++..|.|-||++... +..    ..+. ....|+++.|.| |.+.|+++++||.|++|.+..+     
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~  665 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN  665 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence            3344455554  566789999998643 221    1121 235699999999 6778999999999999998653     


Q ss_pred             --eeeeeecCCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         102 --KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       102 --~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                        ++...++.|.+.|+++.|+|- ...|++++.|-+|++||+++++....+..|.+.|..++|+|||+.+|+.+.||.++
T Consensus       666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r  745 (1012)
T KOG1445|consen  666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR  745 (1012)
T ss_pred             cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence              345667788999999999994 57889999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCcee-eeeecCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEeCC
Q psy4391         179 IWDTASGQCL-KTLIDDDNPPVSFVKFSPNGKYILAATLD----NTLKLWDSY  226 (231)
Q Consensus       179 v~d~~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~s~d----~~v~vwd~~  226 (231)
                      +|+.+.++.. ++-....+..-..+.|--||+++++.+.|    .+|.+||+.
T Consensus       746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq  798 (1012)
T KOG1445|consen  746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ  798 (1012)
T ss_pred             EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence            9999876532 21111112223457788899999988865    478888863

>KOG0307|consensus

Probab=99.82  E-value=7.6e-20  Score=151.08  Aligned_cols=200  Identities=20%  Similarity=0.364  Sum_probs=154.3

Q ss_pred             cceEEEEECCCCCE----EEEEeCCCcEEEeecCC---Cc---EEEEEecccccEEEEEECCCCC-EEEEecCCCcEEEE
Q psy4391          28 KAVSSVKFSPNGEW----LASSSADKLIKIWGAYD---GK---FEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIW   96 (231)
Q Consensus        28 ~~i~~~~~~~~~~~----l~~~~~dg~i~i~~~~~---~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~   96 (231)
                      .+...++|.+.|..    |+.|..||.|.+|+...   +.   .+.....|.+.|..+.|++... .+|+|+.+|.|.+|
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            46789999998876    88899999999999754   21   2334557889999999999655 89999999999999


Q ss_pred             eCCCceeeeeec--CCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCceeeeccCCCC--CeEEEEEcCCCC-eEEE
Q psy4391          97 ELSSGKCLKTLK--GHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD--PVSAVHFNRDGS-LIVS  170 (231)
Q Consensus        97 d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~-~l~~  170 (231)
                      |+.+-+.-....  ...+.|.+++|+.. ..+|++++.+|+..+||++..+.+-.+..+.+  .+..++|+|+.. .+++
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~  224 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV  224 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence            998744322221  23467899999875 45778888999999999998877666655443  478899999864 4555


Q ss_pred             EecCC---eEEEEeCCCCceeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCC
Q psy4391         171 SSYDG---LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       171 ~~~dg---~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~s~d~~v~vwd~~~  227 (231)
                      ++.|.   .|.+||++.-.........|...|.++.|.+.+ ++|++++.|++|.+|+...
T Consensus       225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence            55543   799999987655444445677788999999877 8899999999999999754

>KOG1009|consensus

Probab=99.82  E-value=1.6e-18  Score=129.12  Aligned_cols=123  Identities=34%  Similarity=0.594  Sum_probs=103.5

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecC--------C--------CcEEEEEecccccEEEEEECCCCC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--------D--------GKFEKTISGHKLGISDVAWSSDSR   82 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~   82 (231)
                      ....|..|+..|+++.|+|+|++||+|+.+|.+.+|...        +        ......+.+|...+.+++|+|+++
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~  136 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN  136 (434)
T ss_pred             EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence            334577899999999999999999999999999999764        2        112334567888899999999999


Q ss_pred             EEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECC
Q psy4391          83 LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR  141 (231)
Q Consensus        83 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  141 (231)
                      ++++++.|..+++||+..+.....+..|...+..++|.|-++++++-+.|...+.+.+.
T Consensus       137 ~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  137 FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence            99999999999999999999998888888888888899888888887777766665543

>KOG0303|consensus

Probab=99.82  E-value=3.6e-19  Score=132.23  Aligned_cols=162  Identities=28%  Similarity=0.556  Sum_probs=134.6

Q ss_pred             EEecccccEEEEEECC-CCCEEEEecCCCcEEEEeCCCc-------eeeeeecCCCcceEEEEECCC-CCEEEEeecCCc
Q psy4391          64 TISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELSSG-------KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDES  134 (231)
Q Consensus        64 ~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~  134 (231)
                      .+.+|.++|.++.|+| +.+.||+|++|.+|.+|++..+       +++..+.+|...|.-+.|+|. .+.|++++.|..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            3568999999999999 5667899999999999998653       346677889999999999996 478999999999


Q ss_pred             EEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEE
Q psy4391         135 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA  214 (231)
Q Consensus       135 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  214 (231)
                      |.+|++.+|..+-.+. |.+-|.++.|+.||.++++.+.|..|+|||.++++.+..-..+.+..-.-..|-.+|..+.+|
T Consensus       156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            9999999999877776 999999999999999999999999999999999998876644444333445577788844444


Q ss_pred             e---CCCeEEEEeCC
Q psy4391         215 T---LDNTLKLWDSY  226 (231)
Q Consensus       215 s---~d~~v~vwd~~  226 (231)
                      -   .+.++-+||+.
T Consensus       235 fsr~seRq~aLwdp~  249 (472)
T KOG0303|consen  235 FSRMSERQIALWDPN  249 (472)
T ss_pred             cccccccceeccCcc
Confidence            3   46799999974

>KOG1007|consensus

Probab=99.82  E-value=4.8e-18  Score=121.72  Aligned_cols=207  Identities=27%  Similarity=0.407  Sum_probs=153.3

Q ss_pred             Eeec-ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcE-EEEEe-----cccccEEEEEECC--CCCEEEEecCCC
Q psy4391          21 FTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTIS-----GHKLGISDVAWSS--DSRLLVSGSDDK   91 (231)
Q Consensus        21 ~~~~-~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~~g   91 (231)
                      ..|. .+.+.|.|+.|.|+++.+++.. |..|.+|+...... ...+.     ++....++-+|+|  ++..+++. .++
T Consensus       116 ~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~  193 (370)
T KOG1007|consen  116 ASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDS  193 (370)
T ss_pred             hcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCC
Confidence            3443 4567999999999999998865 88999999876654 33332     2334566778998  66666655 578


Q ss_pred             cEEEEeCCCceeeeee-cCCCcceEEEEECCCCC-EEEEeecCCcEEEEECCCCc-eeeeccCCCCCeEEEEEcCC-CCe
Q psy4391          92 TLKIWELSSGKCLKTL-KGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRD-GSL  167 (231)
Q Consensus        92 ~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~  167 (231)
                      ++..||+++......+ ..|...+..+.|+|+.+ +|++++.||.|++||.+..+ .+..+..|...+.++.|+|. .++
T Consensus       194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqL  273 (370)
T KOG1007|consen  194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQL  273 (370)
T ss_pred             cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceE
Confidence            9999999987655444 46777899999999865 67889999999999998654 57788999999999999995 457


Q ss_pred             EEEEecCCeEEEEeCCCCce------------------------eee----eecCCCCCeEEEEECCCCCEE-EEEeCCC
Q psy4391         168 IVSSSYDGLCRIWDTASGQC------------------------LKT----LIDDDNPPVSFVKFSPNGKYI-LAATLDN  218 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~------------------------~~~----~~~~~~~~i~~~~~s~~g~~l-~~~s~d~  218 (231)
                      +++++.|..|.+|....-..                        +..    ....+...|.+++||.-..++ |+-+.||
T Consensus       274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG  353 (370)
T KOG1007|consen  274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG  353 (370)
T ss_pred             EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence            78999999999986532110                        000    122345578999998877755 6678899


Q ss_pred             eEEEEeCCCCC
Q psy4391         219 TLKLWDSYPCL  229 (231)
Q Consensus       219 ~v~vwd~~~~~  229 (231)
                      ++-|=...+.+
T Consensus       354 RviIs~V~r~~  364 (370)
T KOG1007|consen  354 RVIISSVPRFL  364 (370)
T ss_pred             eEEeecCChhh
Confidence            99876554443

>KOG2096|consensus

Probab=99.82  E-value=1.8e-18  Score=125.46  Aligned_cols=162  Identities=22%  Similarity=0.505  Sum_probs=121.9

Q ss_pred             EEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee-----ee-------------------------------e
Q psy4391          63 KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC-----LK-------------------------------T  106 (231)
Q Consensus        63 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~-----~~-------------------------------~  106 (231)
                      ..+++|...|++++|+.||++|++++.|+.|++|++++...     ++                               .
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            34678999999999999999999999999999999864210     00                               0


Q ss_pred             ec-----------------------CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcC
Q psy4391         107 LK-----------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR  163 (231)
Q Consensus       107 ~~-----------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~  163 (231)
                      ++                       .|.-.+..+-....+.+|++++.|..|.+|+++ |+.+..+......-+..+.+|
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP  238 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP  238 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence            00                       001111122233356789999999999999998 887777766555556678999


Q ss_pred             CCCeEEEEecCCeEEEEeCC---CCce--e-eee-ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         164 DGSLIVSSSYDGLCRIWDTA---SGQC--L-KTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~---~~~~--~-~~~-~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +|+++++++..-.+++|.+-   .|+.  + +.+ ...+.+.|...+|+++.+.+++.+.||.++|||+
T Consensus       239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence            99999999999999999863   2221  1 111 2356778999999999999999999999999996

>KOG1538|consensus

Probab=99.82  E-value=8.5e-18  Score=132.81  Aligned_cols=204  Identities=21%  Similarity=0.368  Sum_probs=154.7

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCC-CcEEE---------EEe----------------------
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEK---------TIS----------------------   66 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~---------~~~----------------------   66 (231)
                      +.-++++|+..|.+++|+.||+++|+|+.|..|.+|...- +....         .+.                      
T Consensus        45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK  124 (1081)
T KOG1538|consen   45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK  124 (1081)
T ss_pred             cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh
Confidence            3457889999999999999999999999999999997531 11100         000                      


Q ss_pred             -----cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeec--CCCcceEEEEECCCC-----CEEEEeecCCc
Q psy4391          67 -----GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNPQS-----NLIVSGSFDES  134 (231)
Q Consensus        67 -----~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~-----~~l~~~~~d~~  134 (231)
                           ....++.+++|..||++++.|-.+|+|.+-+....+....-+  +.+++|.+++|+|..     ..++...+..+
T Consensus       125 ~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT  204 (1081)
T KOG1538|consen  125 SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT  204 (1081)
T ss_pred             hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence                 012357788999999999999999999988654433333222  356889999999853     57888899999


Q ss_pred             EEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEE
Q psy4391         135 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA  214 (231)
Q Consensus       135 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  214 (231)
                      +.++.+. |+.+..-..-.-..-|+.+-++|.+++.|+.|+.+++|. +.|-.+.++.. ....|..++..|++++++.|
T Consensus       205 LSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~-~D~WIWtV~~~PNsQ~v~~G  281 (1081)
T KOG1538|consen  205 LSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGE-QDSWIWTVQAKPNSQYVVVG  281 (1081)
T ss_pred             eEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccc-cceeEEEEEEccCCceEEEE
Confidence            9999886 554443333333456788999999999999999999995 34444555443 45678899999999999999


Q ss_pred             eCCCeEEEEeC
Q psy4391         215 TLDNTLKLWDS  225 (231)
Q Consensus       215 s~d~~v~vwd~  225 (231)
                      +.||+|-.|+.
T Consensus       282 CqDGTiACyNl  292 (1081)
T KOG1538|consen  282 CQDGTIACYNL  292 (1081)
T ss_pred             EccCeeehhhh
Confidence            99999998874

>KOG0321|consensus

Probab=99.81  E-value=1.9e-18  Score=135.29  Aligned_cols=194  Identities=24%  Similarity=0.394  Sum_probs=143.5

Q ss_pred             EEEECC--C-CCEEEEEeCCCcEEEeecCCCcEE------EEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce
Q psy4391          32 SVKFSP--N-GEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (231)
Q Consensus        32 ~~~~~~--~-~~~l~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~  102 (231)
                      +..|++  . ...|+.+.++|.|.++|.......      .....|...|.++.|.|....|++++.|.+++.||+++.+
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            356654  2 336788999999999997543322      3445788899999999976788999999999999999988


Q ss_pred             eeee--ecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCce---------------------------eeeccCC
Q psy4391         103 CLKT--LKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKC---------------------------LKTLPAH  152 (231)
Q Consensus       103 ~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~---------------------------~~~~~~~  152 (231)
                      ....  ..+|...+.+++|.|.. ..+++|+.||.+.|||++-...                           +....++
T Consensus       134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~  213 (720)
T KOG0321|consen  134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA  213 (720)
T ss_pred             eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence            7655  77899999999999965 6788999999999999874320                           0111223


Q ss_pred             CCCeEE---EEEcCCCCeEEEEec-CCeEEEEeCCCCceeeeeec--------C--CCCCeEEEEECCCCCEEEEEeCCC
Q psy4391         153 SDPVSA---VHFNRDGSLIVSSSY-DGLCRIWDTASGQCLKTLID--------D--DNPPVSFVKFSPNGKYILAATLDN  218 (231)
Q Consensus       153 ~~~v~~---~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~--------~--~~~~i~~~~~s~~g~~l~~~s~d~  218 (231)
                      ...|..   +.+..|...||+++. |+.|+|||++..........        .  ....+..+..+..|.+|++.+.|+
T Consensus       214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~  293 (720)
T KOG0321|consen  214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN  293 (720)
T ss_pred             cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence            333443   445567888888776 99999999998764332211        1  112356677888899999999999


Q ss_pred             eEEEEeC
Q psy4391         219 TLKLWDS  225 (231)
Q Consensus       219 ~v~vwd~  225 (231)
                      .|.+|+.
T Consensus       294 sIy~ynm  300 (720)
T KOG0321|consen  294 SIYFYNM  300 (720)
T ss_pred             cEEEEec
Confidence            9999995

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=6.2e-18  Score=134.82  Aligned_cols=194  Identities=19%  Similarity=0.172  Sum_probs=132.7

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCC---CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec-CCCcEEE--E
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKI--W   96 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~~--~   96 (231)
                      +..|...+..+.|+|||+.|+..+.+   ..|++|+..++..... .........++|+|||+.|+.+. .+|.+.+  |
T Consensus       199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  277 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVM  277 (429)
T ss_pred             eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEEEE
Confidence            44567789999999999999876543   3699999977654322 22222344689999999888764 5776555  5


Q ss_pred             eCCCceeeeeecCCCcceEEEEECCCCCEEEEee-cCCcEEEEECCCCc-eeeeccCCCCCeEEEEEcCCCCeEEEEecC
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      |+.+++. ..+..+...+....|+|+|+.|+..+ .++...+|+++... ....+ .+..  ....|+|||++++..+.+
T Consensus       278 d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~  353 (429)
T PRK01742        278 GANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD  353 (429)
T ss_pred             ECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC
Confidence            6666554 34444555567889999999777654 56778888764322 22222 2332  457899999999888766


Q ss_pred             CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      + +.+||+.+++... +...  .....+.|+|+|++|+.++.++.+.+|+.
T Consensus       354 ~-i~~~Dl~~g~~~~-lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        354 N-VVKQDLTSGSTEV-LSST--FLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             C-EEEEECCCCCeEE-ecCC--CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            5 5569998876432 2211  12245779999999999999998888764

>KOG4328|consensus

Probab=99.81  E-value=1.6e-18  Score=130.81  Aligned_cols=207  Identities=21%  Similarity=0.379  Sum_probs=156.8

Q ss_pred             eeEEeecccccceEEEEECCCC-CEEEEEeCCCcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCCCcEE
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLK   94 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~i~   94 (231)
                      .-.+-+..|...|.++.|+|.. ..+++.+.||+|+.-|.+.......+.  .....+..+.|+.+...++.+..-|...
T Consensus       225 d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~  304 (498)
T KOG4328|consen  225 DGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFN  304 (498)
T ss_pred             CceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceE
Confidence            3345556899999999999954 488889999999999987654433332  2344567778888888888888888999


Q ss_pred             EEeCCCcee-eeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCce----eeeccCCCCCeEEEEEcCCCCeE
Q psy4391          95 IWELSSGKC-LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKC----LKTLPAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus        95 ~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l  168 (231)
                      +||.++... ...+.-|...|..++++|.. .+++|++.|++.++||++.-..    +-....|...|.+..|+|++-.|
T Consensus       305 ~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl  384 (498)
T KOG4328|consen  305 VIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTL  384 (498)
T ss_pred             EEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCce
Confidence            999987543 44555677789999999965 5789999999999999985332    23345788899999999998889


Q ss_pred             EEEecCCeEEEEeCC----CCceeeeeecCCC-----CCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         169 VSSSYDGLCRIWDTA----SGQCLKTLIDDDN-----PPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       169 ~~~~~dg~i~v~d~~----~~~~~~~~~~~~~-----~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ++.+.|..|+|||..    .-+....+.....     .++ ...|.|+..++++|-.-..|-|+|.
T Consensus       385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~f-KA~W~P~~~li~vg~~~r~IDv~~~  449 (498)
T KOG4328|consen  385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPF-KAAWDPDYNLIVVGRYPRPIDVFDG  449 (498)
T ss_pred             EeeccCCceEEeecccccccCCccceeeccCcccccccch-hheeCCCccEEEEeccCcceeEEcC
Confidence            999999999999983    2222233322221     122 2469999999999999889999986

>KOG1272|consensus

Probab=99.81  E-value=6.2e-19  Score=133.40  Aligned_cols=192  Identities=21%  Similarity=0.361  Sum_probs=160.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec--------------------------------------ccc
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG--------------------------------------HKL   70 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~--------------------------------------~~~   70 (231)
                      .-..+.++.+|+.++.|+.-|.+--+|..++++..++.-                                      ...
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~  210 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHI  210 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcC
Confidence            346788999999999999999999988877665443321                                      112


Q ss_pred             cEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc
Q psy4391          71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP  150 (231)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  150 (231)
                      +|..+.|.|-.-.|++++..|.++.-|+.+|+.+..+....+.+..+.-+|-+..+-+|...|+|.+|......++..+.
T Consensus       211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL  290 (545)
T KOG1272|consen  211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL  290 (545)
T ss_pred             chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence            45567788887788999999999999999999998888878888889999999999999999999999999999999999


Q ss_pred             CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         151 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       151 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      .|.++|+++++.++|.++++.+.|..++|||+++...+.+...  ..+...+++|..|  +++.+....|.||.
T Consensus       291 cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  291 CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCcccccccccc--ceeeecCCeeeeeh
Confidence            9999999999999999999999999999999998876666554  2345667777755  56667778999996

>KOG1408|consensus

Probab=99.81  E-value=1.8e-18  Score=137.31  Aligned_cols=172  Identities=29%  Similarity=0.465  Sum_probs=145.6

Q ss_pred             CCccceeEEeecccccceEEEEECCCC--CEEEEEeCCCcEEEeecCCCcEEEEEec-----ccccEEEEEECCCCCEEE
Q psy4391          13 PKPNYVLKFTLAGHTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISG-----HKLGISDVAWSSDSRLLV   85 (231)
Q Consensus        13 ~~~~~~~~~~~~~h~~~i~~~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~   85 (231)
                      -+.+|.+..++.+|...|+++.|.-.|  ..++++++|..|.+-..+.......+..     .+..+.+++..|..++++
T Consensus       533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~  612 (1080)
T KOG1408|consen  533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV  612 (1080)
T ss_pred             cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence            456677888999999999999998877  5788999998876654332222222222     234578999999999999


Q ss_pred             EecCCCcEEEEeCCCceeeeeecC---CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEc
Q psy4391          86 SGSDDKTLKIWELSSGKCLKTLKG---HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN  162 (231)
Q Consensus        86 ~~~~~g~i~~~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~  162 (231)
                      +++.|+.|++||++.++..+.+++   +.+....+..+|.|.++++...|.++.++|..+++++..+.+|...|+.+.|.
T Consensus       613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~  692 (1080)
T KOG1408|consen  613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL  692 (1080)
T ss_pred             EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence            999999999999999999988874   34556678899999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEecCCeEEEEeCCC
Q psy4391         163 RDGSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       163 ~~~~~l~~~~~dg~i~v~d~~~  184 (231)
                      +|-+.|++.+.||.|.+|.+..
T Consensus       693 nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  693 NDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             ccchhheeecCCceEEEEECch
Confidence            9999999999999999998754

>KOG1539|consensus

Probab=99.81  E-value=4.7e-17  Score=131.02  Aligned_cols=201  Identities=20%  Similarity=0.346  Sum_probs=160.9

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc----EEEEE-ecccccEEEEEECCCC--CEEEEecCCCcEE
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTI-SGHKLGISDVAWSSDS--RLLVSGSDDKTLK   94 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~----~~~~~-~~~~~~v~~~~~~~~~--~~l~~~~~~g~i~   94 (231)
                      +..+|...|.-+  .+=|+.++++..++.+.||+..+..    ....+ ......++++ ++|..  +.|+.|+..|.+.
T Consensus       109 ~~~~~~a~v~~l--~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lq  185 (910)
T KOG1539|consen  109 TTLLHGAKVHLL--LPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQ  185 (910)
T ss_pred             EeccccceEEEE--eeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEE
Confidence            333454444432  2447888889999999999987631    11122 2222226665 46653  5688999999999


Q ss_pred             EEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCe-EEEEec
Q psy4391          95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSSY  173 (231)
Q Consensus        95 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~  173 (231)
                      +||+++++.+.++++..+.|+++.-+|.-..++.|..+|+|.+++++.++.+..++-..+.|++++|.-||.. +++++.
T Consensus       186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~  265 (910)
T KOG1539|consen  186 LWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS  265 (910)
T ss_pred             EEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC
Confidence            9999999999999999999999999999999999999999999999999999999866689999999999875 566777


Q ss_pred             CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .|.+.+||++..+....+...+...+....|-|....+++++.|+.+++|=.
T Consensus       266 ~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf  317 (910)
T KOG1539|consen  266 NGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF  317 (910)
T ss_pred             CceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence            7999999999988777777666667788889999999999999998888843

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=2.9e-16  Score=124.06  Aligned_cols=196  Identities=44%  Similarity=0.766  Sum_probs=161.6

Q ss_pred             ceEEEEE-CCCCC-EEEEE-eCCCcEEEeecCC-CcEEEEEecccccEEEEEECCCCCEEEEecC-CCcEEEEeCCCcee
Q psy4391          29 AVSSVKF-SPNGE-WLASS-SADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSRLLVSGSD-DKTLKIWELSSGKC  103 (231)
Q Consensus        29 ~i~~~~~-~~~~~-~l~~~-~~dg~i~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~~~d~~~~~~  103 (231)
                      .+..+.+ ++++. .++.. ..|+.+.+|+... ......+..|...+..+.|+|+++.+++++. ++.+++|+...+..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP  190 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce
Confidence            6777777 88887 44443 4489999999987 6777788888889999999999998888885 99999999998788


Q ss_pred             eeeecCCCcceEEEEECCCCC-EEEEeecCCcEEEEECCCCceee-eccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         104 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLK-TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      ...+..|...+.+++++|++. .+++++.|+.+++||...+..+. .+..|.... ...|+|++..+++++.|+.+++|+
T Consensus       191 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~  269 (466)
T COG2319         191 LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWD  269 (466)
T ss_pred             EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEee
Confidence            888888889999999999998 55555899999999998777777 577776664 348999998888999999999999


Q ss_pred             CCCCce-eeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         182 TASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       182 ~~~~~~-~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +..... .... ..+...+..+.|+|++..+++++.|+.+++||..
T Consensus       270 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~  314 (466)
T COG2319         270 LRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE  314 (466)
T ss_pred             ecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence            987664 3333 3446788889999999988889989999999753

>KOG1188|consensus

Probab=99.80  E-value=8.7e-18  Score=122.74  Aligned_cols=189  Identities=23%  Similarity=0.403  Sum_probs=144.6

Q ss_pred             CEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECC--CCCEEEEecCCCcEEEEeCCCceeeeee--cCCC-cce
Q psy4391          40 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIWELSSGKCLKTL--KGHS-NYV  114 (231)
Q Consensus        40 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~--~~~~-~~v  114 (231)
                      ..+|++-.+|.|++||..+++....++++...+..+.|..  ....+.+|+.||.|++||++.......+  ..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688888899999999999999999999988888888876  3456889999999999999875543333  3333 345


Q ss_pred             EEEEECCCCCEEEEeec----CCcEEEEECCCCce-eee-ccCCCCCeEEEEEcCC-CCeEEEEecCCeEEEEeCCCCce
Q psy4391         115 FCCNFNPQSNLIVSGSF----DESVRIWDVRTGKC-LKT-LPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQC  187 (231)
Q Consensus       115 ~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~~-~~~-~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~  187 (231)
                      .+++.+-.++++++|..    +-.|.+||.|..+. +.. ...|.+.|++++|+|+ .++|++|+.||.+.+||+..-..
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            56666667888988865    45689999998765 333 4678999999999995 56889999999999999875422


Q ss_pred             eeeee--cCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCC
Q psy4391         188 LKTLI--DDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       188 ~~~~~--~~~~~~i~~~~~s~~g-~~l~~~s~d~~v~vwd~~~~  228 (231)
                      ...+.  -...+.|..+.|..++ +.+.+-+......+|+....
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence            11111  1234568889998887 45788888999999997544

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=2.6e-16  Score=124.37  Aligned_cols=206  Identities=41%  Similarity=0.772  Sum_probs=165.0

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc-EEEEEeccc-ccEEEEEE-CCCCC-EEEEecC-CCcEEEE
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHK-LGISDVAW-SSDSR-LLVSGSD-DKTLKIW   96 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-~g~i~~~   96 (231)
                      ....|...+.++.+.+.+..++.++.|+.+.+|+..... ....+.... ..+..+.+ .+++. .++..+. ++.+.+|
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  139 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW  139 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence            345788999999999999999999999999999987775 455555433 25666666 77777 4555444 8999999


Q ss_pred             eCCC-ceeeeeecCCCcceEEEEECCCCCEEEEeec-CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCC-eEEEEec
Q psy4391          97 ELSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSY  173 (231)
Q Consensus        97 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~  173 (231)
                      +... ......+..|...+..+.++|++..++.++. ++.+++|++..+..+..+..|...+.+++|+|++. .+++++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  219 (466)
T COG2319         140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS  219 (466)
T ss_pred             EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence            9997 6777788888889999999999998888885 99999999998888888888899999999999998 5555589


Q ss_pred             CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q psy4391         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~  228 (231)
                      |+.+.+||...+.........+.... ...|+|++.++++++.|+.+++||....
T Consensus       220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~  273 (466)
T COG2319         220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS  273 (466)
T ss_pred             CCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence            99999999887766652222233332 2279999989999999999999997543

>KOG4378|consensus

Probab=99.80  E-value=8.3e-18  Score=128.52  Aligned_cols=187  Identities=23%  Similarity=0.347  Sum_probs=153.5

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccc-cEEEEEECCCCCEE-EEecCCCcEEEEeC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSRLL-VSGSDDKTLKIWEL   98 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l-~~~~~~g~i~~~d~   98 (231)
                      ..+++|+..|+++.++-..++||+++..|.|.+....++.....+....+ .|.-+.++|..+++ .+++.+|.|.+||+
T Consensus       115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv  194 (673)
T KOG4378|consen  115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV  194 (673)
T ss_pred             hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence            35679999999999999999999999999999999887776666654433 35678999987765 67889999999999


Q ss_pred             CCceeeeee-cCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCe
Q psy4391          99 SSGKCLKTL-KGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (231)
Q Consensus        99 ~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  176 (231)
                      ....+...+ ..|..+...++|+|.. .+|++.+.|..|.+||.+.......+. ...|.+.++|.++|.+|++|...|.
T Consensus       195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~  273 (673)
T KOG4378|consen  195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGE  273 (673)
T ss_pred             cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCce
Confidence            877665544 4677777889999965 567888999999999999777666654 4668999999999999999999999


Q ss_pred             EEEEeCCCCceeeeeecCCCCCeEEEEECCCC
Q psy4391         177 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG  208 (231)
Q Consensus       177 i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g  208 (231)
                      |..||++..+........+...|..++|-|..
T Consensus       274 ~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  274 LIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             EEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            99999998776655666666679999998764

>KOG1523|consensus

Probab=99.80  E-value=9.8e-18  Score=121.56  Aligned_cols=198  Identities=19%  Similarity=0.304  Sum_probs=158.7

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc---EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC-CCce
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL-SSGK  102 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~-~~~~  102 (231)
                      ..+|+|.+|++|+..+|.+-.+..+.||......   ....+..|...|+.+.|.|..+.|++++.|..-++|.. +.++
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            5789999999999999999999999999876543   45667789999999999999999999999999999998 4433


Q ss_pred             --eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCcee--e--eccCCCCCeEEEEEcCCCCeEEEEecCCe
Q psy4391         103 --CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL--K--TLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (231)
Q Consensus       103 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  176 (231)
                        +...+..++...+++.|+|.++.+|+|+....|.||=.+..+.-  .  .-..+...|.++.|+|++-++++|+.|+.
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence              44455567788899999999999999999999999877654421  1  11244667899999999999999999999


Q ss_pred             EEEEeCCCCc------------------eeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         177 CRIWDTASGQ------------------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       177 i~v~d~~~~~------------------~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +++|..--..                  .+.+. ......+..+.|+|+|..|+-.+.|..+.+=|.
T Consensus       170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA  235 (361)
T ss_pred             eeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence            9998642211                  11111 123345788999999999999999999999885

>KOG0650|consensus

Probab=99.80  E-value=2.5e-18  Score=133.85  Aligned_cols=198  Identities=23%  Similarity=0.379  Sum_probs=160.6

Q ss_pred             ccccceEEEEECCCCCEEEEEeCC---CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      .|...|..+.|+..|++|++...+   ..|.|+++.....+.-+....+.+..+.|+|...++++++. ..|++||+..+
T Consensus       519 ~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq  597 (733)
T KOG0650|consen  519 KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ  597 (733)
T ss_pred             ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHH
Confidence            578899999999999999875443   46888888776666556555677999999998888877765 58999999988


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCC-ceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEE
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~  180 (231)
                      +.++.+......+..++.+|.|.-|+.|+.|+.+..+|+... +..+.+.-|...+++++|++.-.++++|+.||++.|+
T Consensus       598 elvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  598 ELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             HHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            888888777788999999999999999999999999999855 4567788899999999999999999999999999887


Q ss_pred             eCC------CCce---eeeeecC---CCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         181 DTA------SGQC---LKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       181 d~~------~~~~---~~~~~~~---~~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      --.      .+-.   ++.+..+   ....|....|+|...+|++++.||.|++|
T Consensus       678 hg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  678 HGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            321      1111   2222221   22346677899999999999999999998

>KOG1310|consensus

Probab=99.79  E-value=3.7e-18  Score=131.89  Aligned_cols=209  Identities=23%  Similarity=0.424  Sum_probs=154.8

Q ss_pred             ceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEE-ecccccEEEEEECC--CCCEEEEecCCCcE
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSS--DSRLLVSGSDDKTL   93 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~~g~i   93 (231)
                      ..++..|.||++-|.+++|+.+|.+|++|+.|-.+.|||....+....+ ++|...|.++.|-|  +.+.+++|..|..|
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence            3455678899999999999999999999999999999999877777776 57888999999988  45678999999999


Q ss_pred             EEEeCCCc----------eeeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeee----------ccCC
Q psy4391          94 KIWELSSG----------KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKT----------LPAH  152 (231)
Q Consensus        94 ~~~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~----------~~~~  152 (231)
                      +++|+...          +..+.+..|...|..++-.|++ +.+.++++||+++-+|++....-..          ....
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            99999742          2334455677778888888888 7889999999999999985321110          1111


Q ss_pred             CCCeEEEEEcCCC-CeEEEEecCCeEEEEeCCCC--------c----------eeeeeecCC-----------CCCeEEE
Q psy4391         153 SDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASG--------Q----------CLKTLIDDD-----------NPPVSFV  202 (231)
Q Consensus       153 ~~~v~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~--------~----------~~~~~~~~~-----------~~~i~~~  202 (231)
                      --...++.++|.. .+|++|+.|-..++||.+..        .          +++.+...+           ....+.+
T Consensus       200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV  279 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence            1234678889854 57889999999999994321        1          111111111           0114668


Q ss_pred             EECCCCCEEEEEeCCCeEEEEeC
Q psy4391         203 KFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       203 ~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +|+|+|.-|++.=..-.|.++|.
T Consensus       280 tfnpNGtElLvs~~gEhVYlfdv  302 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGEHVYLFDV  302 (758)
T ss_pred             EECCCCcEEEEeeCCeEEEEEee
Confidence            89999987776655568999985

>KOG2110|consensus

Probab=99.79  E-value=2.6e-16  Score=116.18  Aligned_cols=190  Identities=19%  Similarity=0.277  Sum_probs=142.7

Q ss_pred             eEEEEECCCCCEEEEEeCCC--cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy4391          30 VSSVKFSPNGEWLASSSADK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~  107 (231)
                      |...-|+  ..++|..+.+.  .+++++...+.....+.- ...|.++.+.-  +.|+++-++ .|++||+++.+.++++
T Consensus        49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-pt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI  122 (391)
T KOG2110|consen   49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFF-PTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTI  122 (391)
T ss_pred             EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEec-CCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhh
Confidence            4444554  44555544433  367777655554444432 34577777653  455555444 5999999999988877


Q ss_pred             cCC---CcceEEEEECCCCCEEEEee--cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCe-EEEEe
Q psy4391         108 KGH---SNYVFCCNFNPQSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWD  181 (231)
Q Consensus       108 ~~~---~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~v~d  181 (231)
                      ..-   ...+.++..++.+.+++.-+  ..|.|.+||+.+-+.+..+.+|.+++.+++|+++|.+||+++..|+ |+|+.
T Consensus       123 ~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~  202 (391)
T KOG2110|consen  123 ETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFS  202 (391)
T ss_pred             hccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEE
Confidence            543   23355555666667888754  4688999999999999999999999999999999999999999985 78999


Q ss_pred             CCCCceeeeeecCC-CCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         182 TASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       182 ~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +.+++.+.++...- -..|.+++|+|++++|++.+..++|+||..
T Consensus       203 v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  203 VPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL  247 (391)
T ss_pred             cCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence            99999888886543 345788999999999999999999999974

>KOG0649|consensus

Probab=99.79  E-value=3.9e-17  Score=114.55  Aligned_cols=192  Identities=21%  Similarity=0.271  Sum_probs=143.5

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCC---------Cc-EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYD---------GK-FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~---------~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      ..|.+-+|+|.++++++|+.+|.|-++.+..         ++ ..-...+|++++..++|.  ..+|++++ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            3566778999999999999999999997642         11 122336788999999998  35666665 49999887


Q ss_pred             CCCcee------eeee--c-----CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCC
Q psy4391          98 LSSGKC------LKTL--K-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD  164 (231)
Q Consensus        98 ~~~~~~------~~~~--~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  164 (231)
                      ......      ...+  .     .....|.++...|..+.+++++.|+.++-||+++|+..+.+.+|.+.+-++.--..
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            643211      0000  0     12245778889998888888889999999999999999999999999999987555


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeeeecCCC---------CCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN---------PPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~---------~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ...+++|+.||++++||.++++++..+...+.         ..|.+++  -+..+|++|+ .-.+.+|..
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhL  234 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHL  234 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEec
Confidence            66788999999999999999998877643322         2244444  4556887776 568899985

>KOG0649|consensus

Probab=99.79  E-value=9.2e-17  Score=112.71  Aligned_cols=209  Identities=18%  Similarity=0.287  Sum_probs=146.6

Q ss_pred             CCCCCCCCCCccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcE----EE----EEec-----cccc
Q psy4391           5 NAPSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EK----TISG-----HKLG   71 (231)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~----~~----~~~~-----~~~~   71 (231)
                      ++-+.+..++. ....+..++|.++|..++|.  ..+|++|+ ||.|+-|...+...    ..    ...-     .-..
T Consensus        41 sl~s~sa~~~g-k~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPe  116 (325)
T KOG0649|consen   41 SLDSGSAEPPG-KLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPE  116 (325)
T ss_pred             hhhccccCCCC-CcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCc
Confidence            33333343333 33445668999999999998  45666655 69999886532211    10    0111     1234


Q ss_pred             EEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccC
Q psy4391          72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA  151 (231)
Q Consensus        72 v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  151 (231)
                      |.++-..|..+-++.++.|+.++-||+++++..+.+++|.+.+.++.--.....+++|++||++++||+++++++..+..
T Consensus       117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence            77888899888888888999999999999999999999999998887645566789999999999999999998877654


Q ss_pred             CC----------CCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEE
Q psy4391         152 HS----------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK  221 (231)
Q Consensus       152 ~~----------~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~  221 (231)
                      ..          ..|.+++  -+..++++|+ ...+.+|.++..++...+.-  ..++..+.|..  +.+++++..+.|.
T Consensus       197 yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrsse~t~vfpi--pa~v~~v~F~~--d~vl~~G~g~~v~  269 (325)
T KOG0649|consen  197 YKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSSESTCVFPI--PARVHLVDFVD--DCVLIGGEGNHVQ  269 (325)
T ss_pred             ccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCCCceEEEec--ccceeEeeeec--ceEEEecccccee
Confidence            32          2344444  4566776654 56789999998887666532  34556666655  4566666666666


Q ss_pred             EEe
Q psy4391         222 LWD  224 (231)
Q Consensus       222 vwd  224 (231)
                      -|.
T Consensus       270 ~~~  272 (325)
T KOG0649|consen  270 SYT  272 (325)
T ss_pred             eee
Confidence            665

>KOG2110|consensus

Probab=99.78  E-value=7.9e-16  Score=113.68  Aligned_cols=198  Identities=16%  Similarity=0.219  Sum_probs=148.5

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec---ccccEEEEEECCCCCEEEEec--CCCcEEEEeCCCce
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG---HKLGISDVAWSSDSRLLVSGS--DDKTLKIWELSSGK  102 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~~g~i~~~d~~~~~  102 (231)
                      ..|.++.++.  ++|+++-. +.|+|||+.+.+....+..   +..++.++..++.+.+++.-+  ..|.|.+||..+-+
T Consensus        88 t~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~  164 (391)
T KOG2110|consen   88 TSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ  164 (391)
T ss_pred             CceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence            4677777753  45655544 3499999999888776643   344566677777777887543  36899999999999


Q ss_pred             eeeeecCCCcceEEEEECCCCCEEEEeecCCc-EEEEECCCCceeeeccCCCC--CeEEEEEcCCCCeEEEEecCCeEEE
Q psy4391         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-VRIWDVRTGKCLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRI  179 (231)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~v  179 (231)
                      .+..+..|.+.+.+++|+++|.+|||++..|+ |+|+.+.+|+.+..++....  .|.+++|+|++++|++.+..++|++
T Consensus       165 ~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHi  244 (391)
T KOG2110|consen  165 PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHI  244 (391)
T ss_pred             eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEE
Confidence            99999999999999999999999999999987 68999999999888875543  4679999999999999999999999


Q ss_pred             EeCCCCceee-------------------------------------eeecCCCCCeEEEEEC--CCCCEEEEEeCCCeE
Q psy4391         180 WDTASGQCLK-------------------------------------TLIDDDNPPVSFVKFS--PNGKYILAATLDNTL  220 (231)
Q Consensus       180 ~d~~~~~~~~-------------------------------------~~~~~~~~~i~~~~~s--~~g~~l~~~s~d~~v  220 (231)
                      |.+.......                                     .........-..+.+.  +..+.+.+++.||.+
T Consensus       245 FKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~  324 (391)
T KOG2110|consen  245 FKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHL  324 (391)
T ss_pred             EEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeE
Confidence            9875421000                                     0000011111223344  467889999999999


Q ss_pred             EEEeCCCC
Q psy4391         221 KLWDSYPC  228 (231)
Q Consensus       221 ~vwd~~~~  228 (231)
                      ..|...|.
T Consensus       325 y~y~l~~~  332 (391)
T KOG2110|consen  325 YSYRLPPK  332 (391)
T ss_pred             EEEEcCCC
Confidence            99987654

>KOG0290|consensus

Probab=99.78  E-value=3.9e-17  Score=117.17  Aligned_cols=197  Identities=19%  Similarity=0.293  Sum_probs=149.2

Q ss_pred             ccccceEEEEECC-CCCEEEEEeCCCcEEEeecCCCc---EEEEEecccccEEEEEECCCC-CEEEEecCCCcEEEEeCC
Q psy4391          25 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        25 ~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~d~~   99 (231)
                      .+..++++..|+. +-++|.+++-|-+..|||++++.   ....+..|...|.+++|...+ +.+|+.+.||.+|++|++
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            3567899999987 56688899999999999998763   456677899999999999855 467999999999999998


Q ss_pred             CceeeeeecCC---CcceEEEEECCC-CCEEEEeecC-CcEEEEECCCCc-eeeeccCCCCCeEEEEEcCC-CCeEEEEe
Q psy4391         100 SGKCLKTLKGH---SNYVFCCNFNPQ-SNLIVSGSFD-ESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRD-GSLIVSSS  172 (231)
Q Consensus       100 ~~~~~~~~~~~---~~~v~~~~~~~~-~~~l~~~~~d-~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~  172 (231)
                      ..+....+...   ..+...++|+++ -+++|+-..| ..|.+.|++... .+..+..|.+.|..++|.|. ...+++++
T Consensus       228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence            76654444322   345677888875 4677776654 468899998754 57788999999999999995 56889999


Q ss_pred             cCCeEEEEeCCCCce--e--eeeecCCCCCeEEEEECCC-CCEEEEEeCCCeEEE
Q psy4391         173 YDGLCRIWDTASGQC--L--KTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKL  222 (231)
Q Consensus       173 ~dg~i~v~d~~~~~~--~--~~~~~~~~~~i~~~~~s~~-g~~l~~~s~d~~v~v  222 (231)
                      .|.++.+||+...-.  .  ..+....+..|+.+.|++. +.+++.+. ++++.+
T Consensus       308 DD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  308 DDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             CcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            999999999865321  0  1112234567899999965 45666665 555554

>KOG0642|consensus

Probab=99.78  E-value=2e-17  Score=127.86  Aligned_cols=183  Identities=26%  Similarity=0.399  Sum_probs=146.3

Q ss_pred             CCCCCCCCCccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecC------CC----cEEEEEecccccEEEE
Q psy4391           6 APSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY------DG----KFEKTISGHKLGISDV   75 (231)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~------~~----~~~~~~~~~~~~v~~~   75 (231)
                      ++.+..+........+++++|.++|.|+++.++++.+++|+.||.|+.|++.      +.    .....+.+|...++.+
T Consensus       323 Lqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l  402 (577)
T KOG0642|consen  323 LQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLL  402 (577)
T ss_pred             hcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeee
Confidence            3433444444556678899999999999999999999999999999999542      11    1233567889999999


Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCCceeeeeec---------------------------------------------C-
Q psy4391          76 AWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK---------------------------------------------G-  109 (231)
Q Consensus        76 ~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~---------------------------------------------~-  109 (231)
                      ++++....|++++.||++++|+...... +.+.                                             . 
T Consensus       403 ~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~  481 (577)
T KOG0642|consen  403 ALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS  481 (577)
T ss_pred             eecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeecccc
Confidence            9999888999999999999998754332 0000                                             0 


Q ss_pred             ------CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCC
Q psy4391         110 ------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (231)
Q Consensus       110 ------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (231)
                            ....+..+.++|.+.+.+++..|+.|+++|..++..+....+|...++++++.|+|.+|++++.||.+++|.+.
T Consensus       482 ~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  482 ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             CCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence                  01123345677888899999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCceee
Q psy4391         184 SGQCLK  189 (231)
Q Consensus       184 ~~~~~~  189 (231)
                      ...+..
T Consensus       562 ~k~~~~  567 (577)
T KOG0642|consen  562 VKTCVL  567 (577)
T ss_pred             chheee
Confidence            665543

>KOG2394|consensus

Probab=99.78  E-value=1.2e-17  Score=128.62  Aligned_cols=137  Identities=20%  Similarity=0.347  Sum_probs=112.7

Q ss_pred             ccceEEEEECCCCC-EEEEEeCCCcEEEeecCCC--------------cE--------------EEEEecccccEEEEEE
Q psy4391          27 TKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDG--------------KF--------------EKTISGHKLGISDVAW   77 (231)
Q Consensus        27 ~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~--------------~~--------------~~~~~~~~~~v~~~~~   77 (231)
                      +..|+++.|-|.++ .++++-.+|.+++||.+..              ..              +..+.-....+..++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            46899999999655 5566788999999965210              00              0111112346788999


Q ss_pred             CCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeE
Q psy4391          78 SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVS  157 (231)
Q Consensus        78 ~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~  157 (231)
                      +|||++||+.++||.++|+|..+.+.+..++.--+...|++|+|||++|++|++|..|.||.+..++.+..-++|...|+
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs  378 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS  378 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence            99999999999999999999998887666665556788999999999999999999999999999999999999999999


Q ss_pred             EEEEcC
Q psy4391         158 AVHFNR  163 (231)
Q Consensus       158 ~~~~~~  163 (231)
                      .++|+|
T Consensus       379 ~VaFDp  384 (636)
T KOG2394|consen  379 VVAFDP  384 (636)
T ss_pred             eEeecc
Confidence            999997

>KOG1007|consensus

Probab=99.77  E-value=4.5e-17  Score=116.79  Aligned_cols=202  Identities=23%  Similarity=0.355  Sum_probs=147.3

Q ss_pred             eecccccceEEEEECCCCC-EEEEEeCC-------CcEEEeecCCCcE---------EEEEe-cccccEEEEEECCCCCE
Q psy4391          22 TLAGHTKAVSSVKFSPNGE-WLASSSAD-------KLIKIWGAYDGKF---------EKTIS-GHKLGISDVAWSSDSRL   83 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~-~l~~~~~d-------g~i~i~~~~~~~~---------~~~~~-~~~~~v~~~~~~~~~~~   83 (231)
                      .+..|.+.|..++-+|-.+ .|+++..+       ....||.+.....         +..+. .+-+.+.++.|.|++..
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            3445678999999999666 45554432       2467898754321         22222 34457899999999999


Q ss_pred             EEEecCCCcEEEEeCCCcee-eeeec-----CCCcceEEEEECC--CCCEEEEeecCCcEEEEECCCCceeeec-cCCCC
Q psy4391          84 LVSGSDDKTLKIWELSSGKC-LKTLK-----GHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVRTGKCLKTL-PAHSD  154 (231)
Q Consensus        84 l~~~~~~g~i~~~d~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~  154 (231)
                      +++-. +..|.+|+++.+.. +..+.     ++....++-.|+|  +++.+++ ..|+++..||+++......+ .+|..
T Consensus       138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq  215 (370)
T KOG1007|consen  138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQ  215 (370)
T ss_pred             eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcc
Confidence            88775 77999999987654 33332     2233456678888  5666665 55789999999987765554 47778


Q ss_pred             CeEEEEEcCCCC-eEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeC
Q psy4391         155 PVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDS  225 (231)
Q Consensus       155 ~v~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~s~d~~v~vwd~  225 (231)
                      .++.+.|+|+.+ +|++|+.||.|++||.+.-+....-...+...+.++.|+|.. +++++++.|..|.+|.+
T Consensus       216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            899999999877 567889999999999997665544455677789999999864 67788999999999975

>KOG2919|consensus

Probab=99.77  E-value=3.5e-17  Score=118.99  Aligned_cols=186  Identities=23%  Similarity=0.348  Sum_probs=139.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEeec-CCCcEEEE---E----ecccccEEEEEECCCC-CEEEEecCCCcEEEEeCCC
Q psy4391          30 VSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKT---I----SGHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~dg~i~i~~~-~~~~~~~~---~----~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~d~~~  100 (231)
                      ..++.|+|||+.|++| ....|++||. +.++....   +    .+..+-+.+++|+|.. ..++.++-...+-||.-..
T Consensus       161 AhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~  239 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG  239 (406)
T ss_pred             heeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence            4579999999999875 5789999998 44443221   1    1224457788999954 4788888888899999888


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEeec-CCcEEEEECCCC-ceeeeccCCCC-CeEEE--EEcCCCCeEEEEecCC
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTG-KCLKTLPAHSD-PVSAV--HFNRDGSLIVSSSYDG  175 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~-~~~~~~~~~~~-~v~~~--~~~~~~~~l~~~~~dg  175 (231)
                      +.+...+.+|.+.|+.+.|.++|+.+++|.. +..|-.||++.- .++..+..|.+ .=..+  ...|++++|++|+.||
T Consensus       240 ~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG  319 (406)
T KOG2919|consen  240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG  319 (406)
T ss_pred             CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence            8899999999999999999999999999975 778999999854 44555555543 22233  4468999999999999


Q ss_pred             eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC
Q psy4391         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~  216 (231)
                      .|++||+................++.++++|-=..+++++.
T Consensus       320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             cEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence            99999998732222233344556778888988777777663

>KOG3881|consensus

Probab=99.77  E-value=2.1e-16  Score=117.42  Aligned_cols=199  Identities=17%  Similarity=0.268  Sum_probs=153.1

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc----EEEEEecccccEEEEEECCCCCEE-EEecCC--CcEEEEeCC
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSSDSRLL-VSGSDD--KTLKIWELS   99 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~--g~i~~~d~~   99 (231)
                      +..|..++..  ...|++|-.+|.+++|....+.    ....+.. ..++..+.-++....| ++|+..  ..+.+||++
T Consensus       105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             cccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            3445555443  3467778889999999986332    2222332 2456667777765555 558888  789999999


Q ss_pred             CceeeeeecCC---------CcceEEEEECCC--CCEEEEeecCCcEEEEECCCCc-eeeeccCCCCCeEEEEEcCCCCe
Q psy4391         100 SGKCLKTLKGH---------SNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSL  167 (231)
Q Consensus       100 ~~~~~~~~~~~---------~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  167 (231)
                      +.+.+..-+.-         .-.++++.|-+.  ...+++++.-+.+++||.+.++ ++..+...+.+++++...|++++
T Consensus       182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~  261 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNF  261 (412)
T ss_pred             cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcE
Confidence            87544333211         123456777776  7899999999999999998764 56777777889999999999999


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q psy4391         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~  228 (231)
                      +++|...|.+..||++.++.+..........+.++..+|.++++++++.|+.|||+|...+
T Consensus       262 Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  262 IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            9999999999999999999888767777778999999999999999999999999998653

>KOG0268|consensus

Probab=99.76  E-value=4.8e-18  Score=125.02  Aligned_cols=159  Identities=26%  Similarity=0.475  Sum_probs=129.7

Q ss_pred             ccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC-ceee
Q psy4391          27 TKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCL  104 (231)
Q Consensus        27 ~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~-~~~~  104 (231)
                      ...|.++.|+|... .|++|+.|+.|.+||.........+.- ...-..++|+|.+-.++++++|..++.||+.. .+++
T Consensus       187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~  265 (433)
T KOG0268|consen  187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL  265 (433)
T ss_pred             CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccc
Confidence            46789999999655 677788999999999988876665542 34566789999887889999999999999986 3466


Q ss_pred             eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc-CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCC
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (231)
                      ...++|.+.+.+++|+|.|+.+++|+.|.+|++|..+.+..-.... ..-..|.++.|+-|.+++++|+.|+.|++|...
T Consensus       266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            7778899999999999999999999999999999998765321111 112368899999999999999999999999765


Q ss_pred             CCc
Q psy4391         184 SGQ  186 (231)
Q Consensus       184 ~~~  186 (231)
                      ..+
T Consensus       346 Ase  348 (433)
T KOG0268|consen  346 ASE  348 (433)
T ss_pred             hhh
Confidence            433

>KOG0644|consensus

Probab=99.76  E-value=2.4e-18  Score=138.55  Aligned_cols=198  Identities=31%  Similarity=0.534  Sum_probs=163.3

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~  102 (231)
                      +.+|...|.|..|...|.++++|+.|-.++||..++..+.....+|.+.+++++.+.+..++++++.|..|++|.+.++.
T Consensus       186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~  265 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA  265 (1113)
T ss_pred             HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence            45899999999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCC----------------------------------------
Q psy4391         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT----------------------------------------  142 (231)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~----------------------------------------  142 (231)
                      ++..+.+|.+.|++++|+|-.    +.+.||++++||.+-                                        
T Consensus       266 pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~  341 (1113)
T KOG0644|consen  266 PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR  341 (1113)
T ss_pred             hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence            999999999999999999953    667788888888651                                        


Q ss_pred             -------------------------------------------CceeeeccCCCCCeEEEEEcCCCC-eEEEEecCCeEE
Q psy4391         143 -------------------------------------------GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCR  178 (231)
Q Consensus       143 -------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~  178 (231)
                                                                 |+.......|...++.+.++|-+. ...+++.||...
T Consensus       342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~  421 (1113)
T KOG0644|consen  342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTI  421 (1113)
T ss_pred             cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceE
Confidence                                                       000111123445566777888444 456889999999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      |||+-.+..++..... ...+..-+||++|+.++....-|.+.|...
T Consensus       422 iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  422 IWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             eeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEecc
Confidence            9999988877766544 344555789999999988888888888764

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.76  E-value=3e-16  Score=111.57  Aligned_cols=148  Identities=20%  Similarity=0.448  Sum_probs=105.7

Q ss_pred             EEEEECCCCCEEEEecC----------CCcEEEEeCCC-ceeeeeecC-CCcceEEEEECCCCCEEEEe--ecCCcEEEE
Q psy4391          73 SDVAWSSDSRLLVSGSD----------DKTLKIWELSS-GKCLKTLKG-HSNYVFCCNFNPQSNLIVSG--SFDESVRIW  138 (231)
Q Consensus        73 ~~~~~~~~~~~l~~~~~----------~g~i~~~d~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~i~v~  138 (231)
                      ..+.|+|+|+.|+.-..          -+...+|.++. ......+.- ..+.|.+++|+|+|+.+++.  ..+..+.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45789999988765433          12344444422 222333322 23469999999999987654  356789999


Q ss_pred             ECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC---CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe
Q psy4391         139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       139 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                      |++ ++.+..+.  ...+..+.|+|+|+++++++.+   |.+.+||.++.+.+....   ...+..++|+|||++|++++
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---cCcEEEEEEcCCCCEEEEEE
Confidence            997 55555554  4577889999999999988754   679999999877665543   23467899999999999987


Q ss_pred             C------CCeEEEEeCC
Q psy4391         216 L------DNTLKLWDSY  226 (231)
Q Consensus       216 ~------d~~v~vwd~~  226 (231)
                      .      |+.++||+..
T Consensus       163 t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  163 TSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             eccceeccccEEEEEec
Confidence            4      7899999863

>KOG0290|consensus

Probab=99.75  E-value=9.9e-17  Score=115.14  Aligned_cols=199  Identities=23%  Similarity=0.408  Sum_probs=150.4

Q ss_pred             ccccceEEEEECCCCC-----EEEEEeCCCcEEEeecCC--CcEE--EEE-----ecccccEEEEEECC-CCCEEEEecC
Q psy4391          25 GHTKAVSSVKFSPNGE-----WLASSSADKLIKIWGAYD--GKFE--KTI-----SGHKLGISDVAWSS-DSRLLVSGSD   89 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~-----~l~~~~~dg~i~i~~~~~--~~~~--~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~   89 (231)
                      .|.-+++.+-|.|+.+     +||++  +..+|+|.+..  .+..  ..+     ..+..+++++.|.. +-++|.+.+-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            5777899999999874     45543  56899999863  2211  111     23456788999986 5578889999


Q ss_pred             CCcEEEEeCCCce---eeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeeec---cCCCCCeEEEEEc
Q psy4391          90 DKTLKIWELSSGK---CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL---PAHSDPVSAVHFN  162 (231)
Q Consensus        90 ~g~i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~  162 (231)
                      |.+..+||++++.   ...++-.|...|..++|...+ +.+|+.+.||.+++||++.......+   .....+...++|+
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn  251 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN  251 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence            9999999999863   355677899999999999865 57889999999999999976543222   2224567788888


Q ss_pred             C-CCCeEEEEecC-CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeC
Q psy4391         163 R-DGSLIVSSSYD-GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDS  225 (231)
Q Consensus       163 ~-~~~~l~~~~~d-g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~s~d~~v~vwd~  225 (231)
                      + |-+++|+-..| ..|.+.|++...........+...|+.++|.|.. ..+.+++.|.++.+||.
T Consensus       252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl  317 (364)
T KOG0290|consen  252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDL  317 (364)
T ss_pred             cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEec
Confidence            7 45677776666 4788999998765555556778889999999975 57888888999999996

>KOG1034|consensus

Probab=99.75  E-value=4e-16  Score=113.67  Aligned_cols=211  Identities=26%  Similarity=0.509  Sum_probs=151.5

Q ss_pred             CccceeEEee-cccccceEEEEECC----CC-CEEEEEeCCCcEEEeecCCCc---EEEEEe--cccccEEEEEECCC--
Q psy4391          14 KPNYVLKFTL-AGHTKAVSSVKFSP----NG-EWLASSSADKLIKIWGAYDGK---FEKTIS--GHKLGISDVAWSSD--   80 (231)
Q Consensus        14 ~~~~~~~~~~-~~h~~~i~~~~~~~----~~-~~l~~~~~dg~i~i~~~~~~~---~~~~~~--~~~~~v~~~~~~~~--   80 (231)
                      +..|...-.+ .+|+..|..++|.+    +. +.+++++ ...+.+|......   ..+...  .+......++|+-+  
T Consensus        24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~  102 (385)
T KOG1034|consen   24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN  102 (385)
T ss_pred             ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence            4555554444 36889999999984    11 2344443 4467777764332   222222  24455667788754  


Q ss_pred             --CCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeeec---cCCCC
Q psy4391          81 --SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL---PAHSD  154 (231)
Q Consensus        81 --~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~  154 (231)
                        ..++|+++.-|.|++.|+.+++....+.+|...|..+.+.|+. +++++++.|..|++|++++..++..+   .+|.+
T Consensus       103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd  182 (385)
T KOG1034|consen  103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD  182 (385)
T ss_pred             CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence              3468888899999999999999999999999999999999975 78999999999999999999998876   46888


Q ss_pred             CeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecC-----C--CCC-----eEEEEE-----CCC--------CC
Q psy4391         155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-----D--NPP-----VSFVKF-----SPN--------GK  209 (231)
Q Consensus       155 ~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----~--~~~-----i~~~~~-----s~~--------g~  209 (231)
                      .|.++.|+++|.++++++.|.++++|++...+....+...     .  ..+     ...-.|     +.+        |.
T Consensus       183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd  262 (385)
T KOG1034|consen  183 EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD  262 (385)
T ss_pred             cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh
Confidence            9999999999999999999999999999854322211100     0  000     011111     111        67


Q ss_pred             EEEEEeCCCeEEEEeC
Q psy4391         210 YILAATLDNTLKLWDS  225 (231)
Q Consensus       210 ~l~~~s~d~~v~vwd~  225 (231)
                      ++++=+-++.|..|.+
T Consensus       263 ~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  263 FILSKSCENAIVCWKP  278 (385)
T ss_pred             heeecccCceEEEEec
Confidence            8888888999999976

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.75  E-value=1.8e-15  Score=117.09  Aligned_cols=193  Identities=16%  Similarity=0.249  Sum_probs=131.1

Q ss_pred             ceEEEEECCCCCEEEEEeC-CCcEEEeecCCC-c---EEEEEecccccEEEEEECCCCCEEEEe-cCCCcEEEEeCCCce
Q psy4391          29 AVSSVKFSPNGEWLASSSA-DKLIKIWGAYDG-K---FEKTISGHKLGISDVAWSSDSRLLVSG-SDDKTLKIWELSSGK  102 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~g~i~~~d~~~~~  102 (231)
                      ....+.++|+++++++++. ++.+.+|+..+. .   ....+. +......++++|++++++++ ..++.|.+||+.+..
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence            4568999999998887654 789999998632 1   222222 22346778899999988654 456899999997632


Q ss_pred             eee-------eecCCCcceEEEEECCCCCEEEEeec-CCcEEEEECCC--Cc--eeeeccCC------CCCeEEEEEcCC
Q psy4391         103 CLK-------TLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRT--GK--CLKTLPAH------SDPVSAVHFNRD  164 (231)
Q Consensus       103 ~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~--~~--~~~~~~~~------~~~v~~~~~~~~  164 (231)
                      .+.       ... .......+.|+|+++++++... ++.|.+||++.  ++  .+..+...      ......+.++|+
T Consensus       160 ~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd  238 (330)
T PRK11028        160 HLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD  238 (330)
T ss_pred             cccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence            221       111 1234567899999999988876 89999999973  22  22222211      122346889999


Q ss_pred             CCeEEEEec-CCeEEEEeCCCCce----eeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         165 GSLIVSSSY-DGLCRIWDTASGQC----LKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       165 ~~~l~~~~~-dg~i~v~d~~~~~~----~~~~~~~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      +++++++.. ++.|.+|++.....    .......  .....+.++|+|++|+++.. ++.|.+|+.
T Consensus       239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            999988854 68999999854321    2222111  12246889999999998776 889999974

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=2.8e-15  Score=119.48  Aligned_cols=195  Identities=18%  Similarity=0.199  Sum_probs=132.0

Q ss_pred             ccccceEEEEECCCCCEEEEEe---CCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEe-cCCC--cEEEEeC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSS---ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG-SDDK--TLKIWEL   98 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~---~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~g--~i~~~d~   98 (231)
                      .+...+...+|+|||+.|+..+   .+..+.+|+..+++... +......+..+.|+|||+.|+.. +.+|  .|++||+
T Consensus       196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~  274 (429)
T PRK03629        196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  274 (429)
T ss_pred             cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            3455788999999999887643   23468889987765433 32223345568999999988754 4444  5889999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecC-C--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC-
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD-E--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-  174 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-  174 (231)
                      ++++..+.. .+...+....|+|+|+.|+..+.+ +  .|+++|+.+++. ..+...........|+|||++++..+.+ 
T Consensus       275 ~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~  352 (429)
T PRK03629        275 ASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG  352 (429)
T ss_pred             CCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC
Confidence            887654433 333456678999999988776654 4  455557766643 3333334445678899999998876543 


Q ss_pred             --CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCe---EEEEeC
Q psy4391         175 --GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT---LKLWDS  225 (231)
Q Consensus       175 --g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~---v~vwd~  225 (231)
                        ..+.+||+.+++. ..+...  .......|+|||++|+..+.++.   +.+++.
T Consensus       353 g~~~I~~~dl~~g~~-~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~  405 (429)
T PRK03629        353 GQQHIAKQDLATGGV-QVLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST  405 (429)
T ss_pred             CCceEEEEECCCCCe-EEeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence              3588899988763 333221  12235679999999999988764   566664

>KOG1523|consensus

Probab=99.75  E-value=1.7e-16  Score=115.17  Aligned_cols=170  Identities=19%  Similarity=0.309  Sum_probs=137.1

Q ss_pred             ceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeec-CCCcEE--EEEecccccEEEEEECCCCCEEEEecCCCcE
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFE--KTISGHKLGISDVAWSSDSRLLVSGSDDKTL   93 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i   93 (231)
                      +...+++..|...|+.+.|+|..++|++++.|..-++|.. .+++..  ..+..+....+.+.|+|.++.+++++..+.|
T Consensus        45 w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~i  124 (361)
T KOG1523|consen   45 WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLI  124 (361)
T ss_pred             ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEE
Confidence            5566788899999999999999999999999999999998 444433  3455677789999999999999999999999


Q ss_pred             EEEeCCCceee----eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCC------------------CceeeeccC
Q psy4391          94 KIWELSSGKCL----KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT------------------GKCLKTLPA  151 (231)
Q Consensus        94 ~~~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~------------------~~~~~~~~~  151 (231)
                      .+|-++..+.-    +.-+...+.|.+++|+|++-+++.|+.|+.++||...-                  |+.+..+..
T Consensus       125 sVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~  204 (361)
T KOG1523|consen  125 SVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS  204 (361)
T ss_pred             EEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc
Confidence            99988754421    12233457789999999999999999999999986421                  112223334


Q ss_pred             CCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCc
Q psy4391         152 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  186 (231)
Q Consensus       152 ~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  186 (231)
                      ..+.+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus       205 ~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  205 SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            56789999999999999999999999999887654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.75  E-value=1.3e-15  Score=108.33  Aligned_cols=153  Identities=20%  Similarity=0.391  Sum_probs=108.2

Q ss_pred             EEEEECCCCCEEEEEeC----------CCcEEEeecCC-CcEEEEEe-cccccEEEEEECCCCCEEEEe--cCCCcEEEE
Q psy4391          31 SSVKFSPNGEWLASSSA----------DKLIKIWGAYD-GKFEKTIS-GHKLGISDVAWSSDSRLLVSG--SDDKTLKIW   96 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~----------dg~i~i~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~--~~~g~i~~~   96 (231)
                      ..+.|+++|+.|+.-..          -|...+|.+.. ......+. ....+|.+++|+|+|+.+++.  ..+..+.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46889999997754221          13344554422 22233332 234469999999999987654  356799999


Q ss_pred             eCCCceeeeeecCCCcceEEEEECCCCCEEEEeecC---CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD---ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                      |++ .+.+..+.  ...+..+.|+|+|+++++++.+   |.|.+||.++.+.+.....  ..++.++|+|||++++++..
T Consensus        89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen   89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence            997 55555554  3456789999999999998753   6699999998887766543  34789999999999998764


Q ss_pred             ------CCeEEEEeCCCCceee
Q psy4391         174 ------DGLCRIWDTASGQCLK  189 (231)
Q Consensus       174 ------dg~i~v~d~~~~~~~~  189 (231)
                            |+.++||+.. |+.+.
T Consensus       164 ~~r~~~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  164 SPRLRVDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             ccceeccccEEEEEec-CeEeE
Confidence                  6788899875 44443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=3.5e-15  Score=119.41  Aligned_cols=197  Identities=18%  Similarity=0.151  Sum_probs=136.1

Q ss_pred             ecccccceEEEEECCCCCEEEEEeC---CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCC--cEEEE
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDK--TLKIW   96 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g--~i~~~   96 (231)
                      +..|...+...+|+|||+.|+..+.   +..|.+|+..++... .+......+....|+|||+.|+ +.+.++  .|++|
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  275 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTM  275 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEE
Confidence            3456778999999999998877543   458999999777553 3444455667889999999875 445555  47788


Q ss_pred             eCCCceeeeeecCCCcceEEEEECCCCCEEEEeec-CC--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                      |+++++.. .+..+........|+|+|+.|+..+. ++  .|+++|+..++. ..+..+.+.+....|+|||+.++....
T Consensus       276 d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~  353 (435)
T PRK05137        276 DLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQ  353 (435)
T ss_pred             ECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEc
Confidence            98877653 34444444556899999998887664 33  588889876654 344333445667889999999987664


Q ss_pred             C---CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC------CeEEEEeC
Q psy4391         174 D---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD------NTLKLWDS  225 (231)
Q Consensus       174 d---g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d------~~v~vwd~  225 (231)
                      +   ..|.+||+..+.. ..+..  ...+..+.|+|||++|+..+.+      ..+.++|.
T Consensus       354 ~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        354 GGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             CCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence            3   3688889865542 33322  2235668899999998876653      24666664

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=2.5e-15  Score=120.12  Aligned_cols=195  Identities=21%  Similarity=0.210  Sum_probs=132.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCC---CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCC--cEEEEeC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDK--TLKIWEL   98 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g--~i~~~d~   98 (231)
                      .+...+.+.+|+|||+.|+..+..   ..|.+|+..++.... +...........|+|+|+.|+ +.+.+|  .|++||+
T Consensus       201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~  279 (433)
T PRK04922        201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL  279 (433)
T ss_pred             cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence            455678899999999998876533   468999997765433 333333455789999999875 444454  6999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeec-CCc--EEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DES--VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                      .+++.. .+..+........|+|+|+.++..+. ++.  |+++|+.+++. ..+..........+|+|||++++..+.++
T Consensus       280 ~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~  357 (433)
T PRK04922        280 GSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSG  357 (433)
T ss_pred             CCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCC
Confidence            887643 34444334456789999998887664 444  67778776653 33333333445689999999998765433


Q ss_pred             ---eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeC
Q psy4391         176 ---LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---NTLKLWDS  225 (231)
Q Consensus       176 ---~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d---~~v~vwd~  225 (231)
                         .|.+||+.+++.. .+...  .......|+|||++++..+.+   +.|.+++.
T Consensus       358 ~~~~I~v~d~~~g~~~-~Lt~~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~  410 (433)
T PRK04922        358 GQYRIAVMDLSTGSVR-TLTPG--SLDESPSFAPNGSMVLYATREGGRGVLAAVST  410 (433)
T ss_pred             CceeEEEEECCCCCeE-ECCCC--CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence               6899999887643 33221  123456899999998887763   35666665

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=7.5e-15  Score=113.61  Aligned_cols=196  Identities=14%  Similarity=0.237  Sum_probs=132.3

Q ss_pred             ccceEEEEECCCCCEEEEEe-CCCcEEEeecCC-CcEE--EEEecccccEEEEEECCCCCEEEEecC-CCcEEEEeCCC-
Q psy4391          27 TKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYD-GKFE--KTISGHKLGISDVAWSSDSRLLVSGSD-DKTLKIWELSS-  100 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~-~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~~~d~~~-  100 (231)
                      .+....++++|++++|++++ .++.|.+|+... +...  .... .......++++|+++++++++. ++.|.+|++++ 
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence            35577889999999887654 578899999863 3322  1221 2234668999999998887764 78999999864 


Q ss_pred             ce---eeeeecCCCcceEEEEECCCCCEEEEee-cCCcEEEEECCCCceee-------eccCCCCCeEEEEEcCCCCeEE
Q psy4391         101 GK---CLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKCLK-------TLPAHSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus       101 ~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~  169 (231)
                      +.   ....+.. ......+.++|+++++++++ .++.|.+||+++...+.       .... ......+.|+|++++++
T Consensus       113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~ly  190 (330)
T PRK11028        113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAY  190 (330)
T ss_pred             CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEE
Confidence            21   2222222 23356678999999886655 56899999997633221       1112 23457899999999998


Q ss_pred             EEec-CCeEEEEeCCC--Cc--eeeeeecC-C----CCCeEEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         170 SSSY-DGLCRIWDTAS--GQ--CLKTLIDD-D----NPPVSFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       170 ~~~~-dg~i~v~d~~~--~~--~~~~~~~~-~----~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      ++.. ++.|.+|++..  ++  .+..+... .    ......+.++|+|++++++.. ++.|.+|+.
T Consensus       191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence            8876 89999999873  22  22222110 0    111235889999999998864 789999985

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=1.8e-15  Score=120.67  Aligned_cols=188  Identities=26%  Similarity=0.309  Sum_probs=124.9

Q ss_pred             ccccceEEEEECCCCCEEEEEeCC---CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCCcEEEE--eC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIW--EL   98 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~--d~   98 (231)
                      .+...+.+.+|+|||+.|+..+..   ..|.+||+.+++... +..........+|+|||+.|+ +.+.++...+|  |+
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~  271 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA  271 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence            456778899999999998876532   358999998776543 333334556789999999886 45677765555  55


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeec-CCcEEEE--ECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIW--DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                      .++. ...+..+........|+|||+.++..+. ++...+|  ++.++.. ..+..........+|+|||++++..+.++
T Consensus       272 ~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~  349 (427)
T PRK02889        272 DGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVG  349 (427)
T ss_pred             CCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccC
Confidence            4444 3344444444456789999998876654 4555555  4444442 22222223344678999999998776554


Q ss_pred             ---eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q psy4391         176 ---LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN  218 (231)
Q Consensus       176 ---~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~  218 (231)
                         .|.+||+.+++.. .+...  .......|+|||++|+..+.++
T Consensus       350 g~~~I~v~d~~~g~~~-~lt~~--~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        350 GAFKLYVQDLATGQVT-ALTDT--TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CcEEEEEEECCCCCeE-EccCC--CCccCceECCCCCEEEEEEecC
Confidence               6999999887643 23222  2235678999999998887644

>KOG1587|consensus

Probab=99.72  E-value=9.7e-16  Score=122.89  Aligned_cols=201  Identities=22%  Similarity=0.321  Sum_probs=147.8

Q ss_pred             ccceEEEEECC-CCCEEEEEeCCCcEEEeecCCCcE--EE----EEecccccEEEEEECCCC--CEEEEecCCCcEEEEe
Q psy4391          27 TKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKF--EK----TISGHKLGISDVAWSSDS--RLLVSGSDDKTLKIWE   97 (231)
Q Consensus        27 ~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~--~~----~~~~~~~~v~~~~~~~~~--~~l~~~~~~g~i~~~d   97 (231)
                      ...|+++.|+| +..+++.|..+|.|.+||...+..  ..    ....|..++..+.|..+-  .-+++++.||.|..|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            46899999999 556888899999999999976554  22    233577889999997543  3488999999999998


Q ss_pred             CCCcee---------------------------------------------ee------------------eecCCCcce
Q psy4391          98 LSSGKC---------------------------------------------LK------------------TLKGHSNYV  114 (231)
Q Consensus        98 ~~~~~~---------------------------------------------~~------------------~~~~~~~~v  114 (231)
                      ++.-..                                             .+                  ....|.+.+
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            632100                                             00                  011244567


Q ss_pred             EEEEECCCCCEEEEeecCCcEEEEECC-CCceeeeccCCCCCeEEEEEcCCCC-eEEEEecCCeEEEEeCCCCceeeeee
Q psy4391         115 FCCNFNPQSNLIVSGSFDESVRIWDVR-TGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLI  192 (231)
Q Consensus       115 ~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~  192 (231)
                      .++.++|-+..++..+.|-++++|... ...++..+..+...+++++|||... .++++..||.+.+||+..........
T Consensus       402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s  481 (555)
T KOG1587|consen  402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS  481 (555)
T ss_pred             EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence            778888877777666669999999877 5556666667777899999999754 66778889999999997544322211


Q ss_pred             c-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         193 D-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       193 ~-~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      . .+......+.|+++|+.|++|...|.+++|+..+
T Consensus       482 ~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  482 QKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            1 1244566788999999999999999999999744

>KOG1538|consensus

Probab=99.72  E-value=3e-15  Score=118.67  Aligned_cols=193  Identities=20%  Similarity=0.415  Sum_probs=146.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee-----
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC-----  103 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~-----  103 (231)
                      .|..++|-|||..|+.+ .+..+.+||..++.....+++|+..|.+++|+.||+.+++|+.|..|.+|+.+-...     
T Consensus        14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH   92 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH   92 (1081)
T ss_pred             chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence            78999999999977664 367899999999999999999999999999999999999999999999998642111     


Q ss_pred             ---eeee---------------------------c--CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc-
Q psy4391         104 ---LKTL---------------------------K--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-  150 (231)
Q Consensus       104 ---~~~~---------------------------~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-  150 (231)
                         ++..                           .  .....+.+|+|..||++++.|-.+|+|.+-+-. ++..-.+. 
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~R  171 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIER  171 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeC
Confidence               1100                           0  013456788999999999999999999987644 33222222 


Q ss_pred             --CCCCCeEEEEEcCCC-----CeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         151 --AHSDPVSAVHFNRDG-----SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       151 --~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                        +...+|.+++|+|..     ..+++.....++..|.+... .+..-... +..-.++.+-++|.|++.|+.|+.+++|
T Consensus       172 pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L-~FdP~CisYf~NGEy~LiGGsdk~L~~f  249 (1081)
T KOG1538|consen  172 PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRAL-NFDPCCISYFTNGEYILLGGSDKQLSLF  249 (1081)
T ss_pred             CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccC-CCCchhheeccCCcEEEEccCCCceEEE
Confidence              345789999999853     47888888888988887643 23211111 1122467788999999999999999998


Q ss_pred             eC
Q psy4391         224 DS  225 (231)
Q Consensus       224 d~  225 (231)
                      -.
T Consensus       250 TR  251 (1081)
T KOG1538|consen  250 TR  251 (1081)
T ss_pred             ee
Confidence            53

>KOG0322|consensus

Probab=99.72  E-value=1.4e-16  Score=112.91  Aligned_cols=157  Identities=22%  Similarity=0.334  Sum_probs=122.7

Q ss_pred             cccceEEEEECC-CCC--EEEEEeCCCcEEEeecCCCcE----------EEEEecccccEEEEEECCCCCEEEEecCCCc
Q psy4391          26 HTKAVSSVKFSP-NGE--WLASSSADKLIKIWGAYDGKF----------EKTISGHKLGISDVAWSSDSRLLVSGSDDKT   92 (231)
Q Consensus        26 h~~~i~~~~~~~-~~~--~l~~~~~dg~i~i~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~   92 (231)
                      ..+.+.+..+.. +++  ++++|-++|.+.+||..++..          ......|..+|.++.+.+.-..=++++.+..
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            356777777644 344  456788899999999987632          2334457788999999875555567777888


Q ss_pred             EEEEeCCCceee----eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeE
Q psy4391          93 LKIWELSSGKCL----KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus        93 i~~~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  168 (231)
                      +.+|.+......    ..+.-.+..+..+.+-||++++|++++|++++||..++.+.+..+.-|.+.|.+++|+|+...+
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM  308 (323)
T ss_pred             ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence            889988643211    1111223346667888999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCeEEEEeC
Q psy4391         169 VSSSYDGLCRIWDT  182 (231)
Q Consensus       169 ~~~~~dg~i~v~d~  182 (231)
                      |+++.|+.|.+|++
T Consensus       309 AaaskD~rISLWkL  322 (323)
T KOG0322|consen  309 AAASKDARISLWKL  322 (323)
T ss_pred             hhccCCceEEeeec
Confidence            99999999999986

>KOG0771|consensus

Probab=99.72  E-value=1.7e-16  Score=118.89  Aligned_cols=155  Identities=26%  Similarity=0.375  Sum_probs=115.7

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC
Q psy4391          73 SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH  152 (231)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~  152 (231)
                      ..++|+.+|..+++++.||.+|+|+......+.....|...|.++.|+|||++|++.+.| ..+||+.+++..+......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            468999999999999999999999988777666777788899999999999999999999 8999999999665554421


Q ss_pred             --CCCeEEEEEcCCC---CeE--EEEecCCeEEEEeCCCCce---eeeee-cCCCCCeEEEEECCCCCEEEEEeCCCeEE
Q psy4391         153 --SDPVSAVHFNRDG---SLI--VSSSYDGLCRIWDTASGQC---LKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLK  221 (231)
Q Consensus       153 --~~~v~~~~~~~~~---~~l--~~~~~dg~i~v~d~~~~~~---~~~~~-~~~~~~i~~~~~s~~g~~l~~~s~d~~v~  221 (231)
                        ..-...+.|+.|+   .++  +.....+.+..||+.....   ++... ......|++++++++|++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence              1234556777666   222  2333345677766543221   11111 11223689999999999999999999999


Q ss_pred             EEeCCCC
Q psy4391         222 LWDSYPC  228 (231)
Q Consensus       222 vwd~~~~  228 (231)
                      |++.+.+
T Consensus       307 i~~~~~l  313 (398)
T KOG0771|consen  307 IYDAKSL  313 (398)
T ss_pred             EEEecee
Confidence            9998654

>KOG2139|consensus

Probab=99.71  E-value=3e-15  Score=110.60  Aligned_cols=192  Identities=21%  Similarity=0.383  Sum_probs=137.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe-cccccEEEEEECCCCC-EEEEecCCCcEEEEeCCC-ceee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELSS-GKCL  104 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~d~~~-~~~~  104 (231)
                      -.+..++|++.-..++++..|..|++|+... +....++ .....|.+++|-|.+. .++.++. +-|.+|.... ....
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence            4577899998766778899999999999865 3333333 2345799999999654 4555555 4677897642 1111


Q ss_pred             -----------eee--cCCCcceEEEEECCCCCEEEEeec-CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEE
Q psy4391         105 -----------KTL--KGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS  170 (231)
Q Consensus       105 -----------~~~--~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  170 (231)
                                 ..+  .+ ...|+++.|++||..+++++. +..|.+||..++..+.......+.++-+.|+||+.+|++
T Consensus       177 r~~~~~s~~~~qvl~~pg-h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPG-HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCC-CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence                       111  22 367899999999999999875 667999999999877666556678899999999999999


Q ss_pred             EecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         171 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      +.-|+..++|+............. ...+..-.|+|+|++|+.... |.=++|.
T Consensus       256 At~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp~lys  307 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACS-GSPRLYS  307 (445)
T ss_pred             ecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEc-CCceEEE
Confidence            999999999965433222222222 236777889999998877664 3444554

>KOG1240|consensus

Probab=99.71  E-value=6.1e-15  Score=123.50  Aligned_cols=217  Identities=16%  Similarity=0.218  Sum_probs=158.7

Q ss_pred             CCCccceeEEeecccccceEEEEECCCC-CEEEEEeCCCcEEEeecCCC-------cEEEEEecccccEEEEEECCCCCE
Q psy4391          12 NPKPNYVLKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSDSRL   83 (231)
Q Consensus        12 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~   83 (231)
                      .+.+.+.+...+..|...+..++.++.. .++++|+.||+|++|+....       +..........++..+.+.+.+..
T Consensus      1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            3466777888888999999999998755 89999999999999997431       122233334567888999999999


Q ss_pred             EEEecCCCcEEEEeCCCce-------eeeeecCC-CcceEEE-EECC-CCC-EEEEeecCCcEEEEECCCCceeeecc--
Q psy4391          84 LVSGSDDKTLKIWELSSGK-------CLKTLKGH-SNYVFCC-NFNP-QSN-LIVSGSFDESVRIWDVRTGKCLKTLP--  150 (231)
Q Consensus        84 l~~~~~~g~i~~~d~~~~~-------~~~~~~~~-~~~v~~~-~~~~-~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~--  150 (231)
                      +|+++.||.|++.+++...       ..+....+ .+.+..+ ++.. .+. .++.+...+.+..||+++......++  
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            9999999999999887521       11111111 2233333 2221 233 67888888999999999776554443  


Q ss_pred             CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCC---CEEEEEe--CCCeEEEEeC
Q psy4391         151 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAAT--LDNTLKLWDS  225 (231)
Q Consensus       151 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l~~~s--~d~~v~vwd~  225 (231)
                      ...+.|++++.+|.+.+++.|+..|.+.+||++-+..+..+......++..+..+|-.   ...++++  ..+.|.+|+.
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence            3457899999999999999999999999999998888888777777777777766543   3444444  4789999997


Q ss_pred             CCC
Q psy4391         226 YPC  228 (231)
Q Consensus       226 ~~~  228 (231)
                      ...
T Consensus      1273 ~~g 1275 (1431)
T KOG1240|consen 1273 ETG 1275 (1431)
T ss_pred             ccC
Confidence            544

>KOG4227|consensus

Probab=99.71  E-value=1.2e-15  Score=113.99  Aligned_cols=203  Identities=17%  Similarity=0.242  Sum_probs=149.8

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCcEEEeecCC------CcEEEEEe-cccccEEEEEECCCCCEEEEecCCCcEEE
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD------GKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~   95 (231)
                      +.+|.+.|.++.|+.++++|++|+.|-.+++|.++.      .+.+.... .|...|.+++|....+++++|..+++|.+
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK  131 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence            458999999999999999999999999999999742      23333333 34578999999999999999999999999


Q ss_pred             EeCCCceeeeeecCC--CcceEEEEECCCCCEEEEeecCCcEEEEECCCCc-eeee--ccCCCCCeEEEEEcCC-CCeEE
Q psy4391          96 WELSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKT--LPAHSDPVSAVHFNRD-GSLIV  169 (231)
Q Consensus        96 ~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~--~~~~~~~v~~~~~~~~-~~~l~  169 (231)
                      -|+++.+.+..+...  .+.|..+..+|..+.+++.+.++.|.+||.+..+ ....  ..........+.|+|. ..+|+
T Consensus       132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~  211 (609)
T KOG4227|consen  132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALIL  211 (609)
T ss_pred             eecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEE
Confidence            999998876655422  2478999999999999999999999999998665 2211  2223445677889985 45777


Q ss_pred             EEecCCeEEEEeCCCCcee-eee-----ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         170 SSSYDGLCRIWDTASGQCL-KTL-----IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~-~~~-----~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +.+..+-+.+||.+..... ...     ............|+|+|..|.+--....=.+||.
T Consensus       212 ~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~  273 (609)
T KOG4227|consen  212 VNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF  273 (609)
T ss_pred             eccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence            8888899999998764321 100     0111122345679999988776655445555554

>KOG2321|consensus

Probab=99.71  E-value=1.5e-15  Score=118.16  Aligned_cols=205  Identities=21%  Similarity=0.333  Sum_probs=149.3

Q ss_pred             ccccceEEEEECCCCCEE-EEEeCCCcEEEeecCCCcEEEE----------------------------Eecc-------
Q psy4391          25 GHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKT----------------------------ISGH-------   68 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~----------------------------~~~~-------   68 (231)
                      +|...-+.+..+|||+++ |+|..--.|++||.........                            +.-|       
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            466777899999999976 5677888999999754321100                            0000       


Q ss_pred             ccc----EEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc
Q psy4391          69 KLG----ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK  144 (231)
Q Consensus        69 ~~~----v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  144 (231)
                      ...    -.+++++.-..-|+.++....|+-++++.|..+..+....+.+.++..++-..+|++|+.+|.|.+||.+...
T Consensus       129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks  208 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS  208 (703)
T ss_pred             eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence            000    1123333222224455555678888999999888888777889999999999999999999999999999876


Q ss_pred             eeeecc------CCCC-----CeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCC--CEE
Q psy4391         145 CLKTLP------AHSD-----PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG--KYI  211 (231)
Q Consensus       145 ~~~~~~------~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l  211 (231)
                      .+..+.      .+.+     .|+++.|+.+|-.+++|+.+|.+.+||++..+.+..-......+|..+.|.+.+  ..|
T Consensus       209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v  288 (703)
T KOG2321|consen  209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV  288 (703)
T ss_pred             hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence            554432      2222     489999999999999999999999999999987776666667789999997663  344


Q ss_pred             EEEeCCCeEEEEeCCCCCC
Q psy4391         212 LAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       212 ~~~s~d~~v~vwd~~~~~~  230 (231)
                      ++. ....++|||.....|
T Consensus       289 ~S~-Dk~~~kiWd~~~Gk~  306 (703)
T KOG2321|consen  289 VSM-DKRILKIWDECTGKP  306 (703)
T ss_pred             Eec-chHHhhhcccccCCc
Confidence            433 356999999766554

>KOG2445|consensus

Probab=99.71  E-value=4e-15  Score=107.71  Aligned_cols=170  Identities=22%  Similarity=0.387  Sum_probs=130.7

Q ss_pred             CCccceeEEeecccccceEEEEECC--CCCEEEEEeCCCcEEEeecCCC-------c--EEEEEecccccEEEEEECC--
Q psy4391          13 PKPNYVLKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDG-------K--FEKTISGHKLGISDVAWSS--   79 (231)
Q Consensus        13 ~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~-------~--~~~~~~~~~~~v~~~~~~~--   79 (231)
                      +..++...-..+.|.++|..+.|.+  -|+.+|+++.|+++.||.-...       +  ....+......|+++.|.|  
T Consensus        45 ~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h  124 (361)
T KOG2445|consen   45 DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH  124 (361)
T ss_pred             CCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh
Confidence            4556777778889999999999975  5899999999999999975211       1  2234455667899999998  


Q ss_pred             CCCEEEEecCCCcEEEEeCCCce---------------------------------------------------------
Q psy4391          80 DSRLLVSGSDDKTLKIWELSSGK---------------------------------------------------------  102 (231)
Q Consensus        80 ~~~~l~~~~~~g~i~~~d~~~~~---------------------------------------------------------  102 (231)
                      -|-.+++++.||.+|+|+....-                                                         
T Consensus       125 lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iy  204 (361)
T KOG2445|consen  125 LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIY  204 (361)
T ss_pred             cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEE
Confidence            47789999999999999752100                                                         


Q ss_pred             ----------eeeeecCCCcceEEEEECCC----CCEEEEeecCCcEEEEECCCC--------------------ceeee
Q psy4391         103 ----------CLKTLKGHSNYVFCCNFNPQ----SNLIVSGSFDESVRIWDVRTG--------------------KCLKT  148 (231)
Q Consensus       103 ----------~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~v~d~~~~--------------------~~~~~  148 (231)
                                .+..+..+.++|.+++|.|.    -.+||+++.|| |++|.+...                    +.+..
T Consensus       205 e~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~  283 (361)
T KOG2445|consen  205 EYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE  283 (361)
T ss_pred             EecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence                      00112245677889999985    35799999999 999998731                    12344


Q ss_pred             ccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCC
Q psy4391         149 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (231)
Q Consensus       149 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (231)
                      +..|.+.|..+.|+-.|..|++.+.||.+++|...
T Consensus       284 ~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  284 LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             ccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            66888999999999999999999999999999653

>KOG2111|consensus

Probab=99.70  E-value=1.6e-14  Score=105.06  Aligned_cols=175  Identities=21%  Similarity=0.328  Sum_probs=131.6

Q ss_pred             CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC-CceeeeeecCCC--cceEEEEECCCCCE
Q psy4391          49 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS-SGKCLKTLKGHS--NYVFCCNFNPQSNL  125 (231)
Q Consensus        49 g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~-~~~~~~~~~~~~--~~v~~~~~~~~~~~  125 (231)
                      ..+.|||-...+...++. ...+|.++.+.++  .|++. ..+.|++|... +.+.++.+....  ....+++-..+..+
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            479999976666666654 3567899988875  34444 45689999987 445555554332  22333333334455


Q ss_pred             EEEee-cCCcEEEEECCCCce--eeeccCCCCCeEEEEEcCCCCeEEEEecCCe-EEEEeCCCCceeeeeecC-CCCCeE
Q psy4391         126 IVSGS-FDESVRIWDVRTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD-DNPPVS  200 (231)
Q Consensus       126 l~~~~-~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~-~~~~i~  200 (231)
                      ||..+ .-|.|.+.|+.....  ...+.+|...|.+++.+.+|..+|+++..|+ |++||..+++.+.++... +...|.
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence            66544 468999999976554  4677899999999999999999999999985 789999999998887653 456789


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         201 FVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       201 ~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +++|||++.+|+++|..|+|+||...+
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            999999999999999999999998643

>KOG1517|consensus

Probab=99.70  E-value=3.2e-15  Score=123.63  Aligned_cols=197  Identities=22%  Similarity=0.350  Sum_probs=140.6

Q ss_pred             cceEEEEECC--CCCEEEEEeCCCcEEEeecCCC--c---EEEEEe-------cccccEEEEEECCCCCEEEEecCCCcE
Q psy4391          28 KAVSSVKFSP--NGEWLASSSADKLIKIWGAYDG--K---FEKTIS-------GHKLGISDVAWSSDSRLLVSGSDDKTL   93 (231)
Q Consensus        28 ~~i~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~--~---~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~g~i   93 (231)
                      ..|+.+.+-.  |..++++|+.||.|+||+....  +   .+..+.       +..+.-.-+.|.....+|+++++-..|
T Consensus      1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred             CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence            4688888865  3447889999999999985322  1   121111       111111335787777778888888999


Q ss_pred             EEEeCCCceeeeeecCCC-cceEEEEEC-CCCCEEEEeecCCcEEEEECCCCc---eeeeccCCCCC--eEEEEEcCCCC
Q psy4391          94 KIWELSSGKCLKTLKGHS-NYVFCCNFN-PQSNLIVSGSFDESVRIWDVRTGK---CLKTLPAHSDP--VSAVHFNRDGS  166 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~~~-~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~--v~~~~~~~~~~  166 (231)
                      ++||.........+.... ..++++.-+ +.|+.++.|..||.|++||.+...   .+.....|...  |..+.+.+.|-
T Consensus      1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred             EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence            999999888777765433 345554433 347999999999999999998654   34555667665  88889988665


Q ss_pred             -eEEEEecCCeEEEEeCCCCceeeee--ecC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         167 -LIVSSSYDGLCRIWDTASGQCLKTL--IDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       167 -~l~~~~~dg~i~v~d~~~~~~~~~~--~~~--~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                       .|++|+.+|.|.+||++.......+  ..+  .++..+++..+++...+|+|+. +.|+||+.
T Consensus      1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred             cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence             4999999999999999985222111  111  1335889999999999999998 99999996

>KOG2394|consensus

Probab=99.68  E-value=1.1e-15  Score=118.04  Aligned_cols=168  Identities=18%  Similarity=0.273  Sum_probs=124.5

Q ss_pred             CCCCEEEEEeCCCcEEEeecCCCcEEEEEe----cccccEEEEEECCCC-CEEEEecCCCcEEEEeCCC-----------
Q psy4391          37 PNGEWLASSSADKLIKIWGAYDGKFEKTIS----GHKLGISDVAWSSDS-RLLVSGSDDKTLKIWELSS-----------  100 (231)
Q Consensus        37 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~d~~~-----------  100 (231)
                      +++--+..|-..|.+++.+.......+.+.    -.+..|+++.|-|.+ ..++++..+|.+++||...           
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            455556677778888888765422211111    123679999999854 4566777899999997531           


Q ss_pred             ---cee--------------eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcC
Q psy4391         101 ---GKC--------------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR  163 (231)
Q Consensus       101 ---~~~--------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~  163 (231)
                         +..              +..+.-....+...+|+|||++||+.+.||.++|||..+...+..++..-+...|++|+|
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP  342 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence               110              111111233566789999999999999999999999998877777777778899999999


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEEC
Q psy4391         164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS  205 (231)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s  205 (231)
                      ||+++++|+.|..|.||.+...+.+.. -..+++.|+.++|+
T Consensus       343 DGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFD  383 (636)
T ss_pred             CccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeec
Confidence            999999999999999999998876654 34567788889888

>KOG4497|consensus

Probab=99.68  E-value=2.2e-15  Score=110.19  Aligned_cols=194  Identities=20%  Similarity=0.361  Sum_probs=135.5

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEeCCCceeeeeecCC
Q psy4391          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLKTLKGH  110 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~  110 (231)
                      -+.|||+|+++|+++.- .+.|.|.++.+..+.+.. -..|.-+.|..|..+++ ....++.|.+|++...+-...+...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            46799999999998754 777777765443322222 33566788998887765 4567889999999998888888888


Q ss_pred             CcceEEEEECCCCCEE-EEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC---------------
Q psy4391         111 SNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD---------------  174 (231)
Q Consensus       111 ~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------  174 (231)
                      ...+..++|+|+|+.| .+...+-+|.||.+.+.+.... .-....+..++|+|||++.+..+.-               
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~  169 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI  169 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence            8889999999999654 5566788999999988765332 2122345677888888876655421               


Q ss_pred             ---------------------CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy4391         175 ---------------------GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       175 ---------------------g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~~  230 (231)
                                           ..+.+||.--.-  ..+..+.+-.+..++|+|.+++|++|+.|+.+||.+.+.=.|
T Consensus       170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Ley--kv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~  244 (447)
T KOG4497|consen  170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEY--KVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP  244 (447)
T ss_pred             HHHhcCCCcccccCceECCCCcEEEEecchhhh--eeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence                                 113334321111  111223345678899999999999999999999988654433

>KOG1524|consensus

Probab=99.67  E-value=1.2e-15  Score=118.04  Aligned_cols=175  Identities=26%  Similarity=0.363  Sum_probs=134.6

Q ss_pred             CEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEE
Q psy4391          40 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNF  119 (231)
Q Consensus        40 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~  119 (231)
                      +.++.++.||.+.+.+- .++..+.+..|.+.+.+-.|+|+|.-|+++++||.|++|.-.. -....+.-....|.|++|
T Consensus        76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCARW  153 (737)
T ss_pred             ceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEEEE
Confidence            46777888999888764 5667777888999999999999999999999999999999653 222223334567999999


Q ss_pred             CCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCe
Q psy4391         120 NPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV  199 (231)
Q Consensus       120 ~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i  199 (231)
                      .|+.+.++.+.. +.+.+=-+.....+-...+|.+-|.++.|++..+.+++|+.|...++||..... +..- ..+..+|
T Consensus       154 ~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~-Lf~S-~~~ey~I  230 (737)
T KOG1524|consen  154 APNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN-LFTS-AAEEYAI  230 (737)
T ss_pred             CCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-cccC-Chhccce
Confidence            999876665443 456555565555566778999999999999999999999999999999986433 3322 2456789


Q ss_pred             EEEEECCCCCEEEEEeCCCeEE
Q psy4391         200 SFVKFSPNGKYILAATLDNTLK  221 (231)
Q Consensus       200 ~~~~~s~~g~~l~~~s~d~~v~  221 (231)
                      ++++|.|+ +.++.++. +.+|
T Consensus       231 TSva~npd-~~~~v~S~-nt~R  250 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSY-NTAR  250 (737)
T ss_pred             eeeeeccc-cceeeeee-eeee
Confidence            99999999 66677764 3444

>KOG1517|consensus

Probab=99.67  E-value=4.5e-15  Score=122.80  Aligned_cols=193  Identities=19%  Similarity=0.327  Sum_probs=143.4

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec-ccccEEEEEEC-CCCCEEEEecCCCcEEEEeCCCce---eee
Q psy4391          31 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWS-SDSRLLVSGSDDKTLKIWELSSGK---CLK  105 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~~---~~~  105 (231)
                      .-+.|.....+|++++.-..|+|||.+.......+.. ....++++.-+ +.|+.+++|..||.|++||.+...   .+.
T Consensus      1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred             eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence            3467777666666666688999999987776666643 33446665433 347899999999999999987533   455


Q ss_pred             eecCCCcc--eEEEEECCCCC-EEEEeecCCcEEEEECCCCceee--eccCC---CCCeEEEEEcCCCCeEEEEecCCeE
Q psy4391         106 TLKGHSNY--VFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLK--TLPAH---SDPVSAVHFNRDGSLIVSSSYDGLC  177 (231)
Q Consensus       106 ~~~~~~~~--v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~--~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i  177 (231)
                      ..+.|...  |..+.+.+.|- .|++|+.+|.|++||++......  .+..|   .+..+++..+++...+|+|+. +.|
T Consensus      1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred             eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence            66777766  88888888664 59999999999999999842211  12222   235899999999999999987 999


Q ss_pred             EEEeCCCCceeeee------ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         178 RIWDTASGQCLKTL------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       178 ~v~d~~~~~~~~~~------~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .||++...+ +..+      .......+.+++|+|..-++|+|+.|..|.||..
T Consensus      1328 kIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1328 KIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred             EEEecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence            999987543 2222      2223445689999999999999999999999985

>KOG1188|consensus

Probab=99.67  E-value=2.7e-15  Score=109.86  Aligned_cols=145  Identities=22%  Similarity=0.441  Sum_probs=116.5

Q ss_pred             CEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECC--CCCEEEEeecCCcEEEEECCCCceeeecc--CCC-CCe
Q psy4391          82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVRTGKCLKTLP--AHS-DPV  156 (231)
Q Consensus        82 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~-~~v  156 (231)
                      ..+|++...|.|++||..+++.+..++++...+..+.|..  ....+.+++.||.|++||+|.......+.  .+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4578888899999999999999999988877777777755  56789999999999999999876554443  333 345


Q ss_pred             EEEEEcCCCCeEEEEec----CCeEEEEeCCCCce-eeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCC
Q psy4391         157 SAVHFNRDGSLIVSSSY----DGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSY  226 (231)
Q Consensus       157 ~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~-~~~~~~~~~~~i~~~~~s~~g-~~l~~~s~d~~v~vwd~~  226 (231)
                      .+++..-.++.+++|..    +-.+.+||.+..+. ++.+...+...|+.+.|+|+. ..|++||.||-|.+||..
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~  196 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK  196 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence            56665556777887763    56899999998876 777777788889999999976 588999999999999974

>KOG1963|consensus

Probab=99.66  E-value=5e-14  Score=114.36  Aligned_cols=203  Identities=21%  Similarity=0.340  Sum_probs=155.2

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCC--C--cEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--G--KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      .|+-.+++.+++|+++++|+|..||.|.+|....  +  .....+..|...|.+++|+++|.+|++|+..+.+.+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            3666689999999999999999999999998643  1  23345678888999999999999999999999999999999


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce---eeeccC--------CCCCeEEEEEcCCCCeEE
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---LKTLPA--------HSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~--------~~~~v~~~~~~~~~~~l~  169 (231)
                      ++ .+-+..-.+.+..+.++||+.+.+....|..|.+....+-..   +.-+..        ..+-.+.++++|..+.++
T Consensus       283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v  361 (792)
T KOG1963|consen  283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV  361 (792)
T ss_pred             CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence            87 455666678899999999999999999999999887643222   111111        133456788999777888


Q ss_pred             EEecCCeEEEEeCCCCceeeeeecC-----C-----CCCeEEEEECCCCCEEEEEe--------CC--CeEEEEeCCCC
Q psy4391         170 SSSYDGLCRIWDTASGQCLKTLIDD-----D-----NPPVSFVKFSPNGKYILAAT--------LD--NTLKLWDSYPC  228 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~-----~-----~~~i~~~~~s~~g~~l~~~s--------~d--~~v~vwd~~~~  228 (231)
                      -.+..|.|.+||+-+.+.+..+...     .     .-.+..++.+-.|.++++.-        .|  ..+++|-..|.
T Consensus       362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~  440 (792)
T KOG1963|consen  362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN  440 (792)
T ss_pred             ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence            8889999999999877665544211     1     11345667777788888765        22  37888877654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.66  E-value=1.1e-13  Score=110.47  Aligned_cols=194  Identities=23%  Similarity=0.248  Sum_probs=131.6

Q ss_pred             ccccceEEEEECCCCCEEEEEeCC---CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEE-ecCCC--cEEEEeC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVS-GSDDK--TLKIWEL   98 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~g--~i~~~d~   98 (231)
                      .+...+...+|+|+|++|+.+...   ..|++|+..+++... +..+...+..++|+|+++.|+. .+.++  .|++||+
T Consensus       187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~  265 (417)
T TIGR02800       187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL  265 (417)
T ss_pred             cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence            345568889999999998876543   479999998775433 3333445667899999987764 44444  5888998


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeec-CC--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                      .++.... +..+........|+|+++.|+..+. ++  .|+++|+.+++. ..+..+......+.|+|++++++.++.++
T Consensus       266 ~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~  343 (417)
T TIGR02800       266 DGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREG  343 (417)
T ss_pred             CCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccC
Confidence            8765433 3333333345689999998876654 33  588888877654 33443445667789999999998887765


Q ss_pred             ---eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCC---eEEEEe
Q psy4391         176 ---LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWD  224 (231)
Q Consensus       176 ---~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~---~v~vwd  224 (231)
                         .|.+||+.++.. ..+...  .......|+|+|++|+..+.++   .+.+.+
T Consensus       344 ~~~~i~~~d~~~~~~-~~l~~~--~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~  395 (417)
T TIGR02800       344 GGFNIAVMDLDGGGE-RVLTDT--GLDESPSFAPNGRMILYATTRGGRGVLGLVS  395 (417)
T ss_pred             CceEEEEEeCCCCCe-EEccCC--CCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence               788999987543 222221  1223467999999998887754   344444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1963|consensus

Probab=99.66  E-value=5.3e-14  Score=114.20  Aligned_cols=204  Identities=22%  Similarity=0.367  Sum_probs=141.7

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      .+.-|...|.++.|+++|.+|++|+..|.+-+|...+++ .+-+..-..++..+.++||+...+....|..|.+....+.
T Consensus       246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             EEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence            456788999999999999999999999999999998887 4455666778999999999999999999999999887554


Q ss_pred             eeeeeecC-----------CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeee----------------------
Q psy4391         102 KCLKTLKG-----------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT----------------------  148 (231)
Q Consensus       102 ~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----------------------  148 (231)
                      +....+.+           ..+..+.++++|.-+.++..+..+.|.+||+.+...+..                      
T Consensus       325 ~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav  404 (792)
T KOG1963|consen  325 EIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAV  404 (792)
T ss_pred             hhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeee
Confidence            43332221           123345566777666666667777777777644221111                      


Q ss_pred             ----------------------------------------------ccCCCCCeEEEEEcC-C-CCeEEEEecCCeEEEE
Q psy4391         149 ----------------------------------------------LPAHSDPVSAVHFNR-D-GSLIVSSSYDGLCRIW  180 (231)
Q Consensus       149 ----------------------------------------------~~~~~~~v~~~~~~~-~-~~~l~~~~~dg~i~v~  180 (231)
                                                                    ...|+..+.+.++.+ . ....++++.||.+++|
T Consensus       405 ~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW  484 (792)
T KOG1963|consen  405 ARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIW  484 (792)
T ss_pred             hhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEE
Confidence                                                          123444444444433 2 2267888999999999


Q ss_pred             eCCCCcee---------eeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         181 DTASGQCL---------KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       181 d~~~~~~~---------~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      -+..-+..         ..+..-+..++.+++|+.||..|++ +.|+.|.+||+-.
T Consensus       485 ~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  485 VFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYDT  539 (792)
T ss_pred             EEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-ecCCEEEEecCCC
Confidence            77322111         1111224667888999999975555 5689999999854

>KOG1272|consensus

Probab=99.66  E-value=5.1e-16  Score=117.84  Aligned_cols=192  Identities=19%  Similarity=0.302  Sum_probs=155.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~  107 (231)
                      ..|..+.|.|.--+|++++..|.++.-|+.+|+.+..+....+.+..++..|-...+-+|..+|+|.+|.....+++..+
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi  289 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI  289 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence            57888999999889999999999999999999999888877788888999998889999999999999999998888888


Q ss_pred             cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEE-eCCCCc
Q psy4391         108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW-DTASGQ  186 (231)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~-d~~~~~  186 (231)
                      -.|.+.|.++++.++|++++|.+.|..+++||+++-..+..... ..+...+++|..|  +++.+....+.+| |...+.
T Consensus       290 LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s  366 (545)
T KOG1272|consen  290 LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGS  366 (545)
T ss_pred             HhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCC
Confidence            88999999999999999999999999999999998775555544 4567778888654  4455667789999 443321


Q ss_pred             ---eeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q psy4391         187 ---CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (231)
Q Consensus       187 ---~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~v  222 (231)
                         ....+......+|..+.|-|-.+.|-+|...|.-.+
T Consensus       367 ~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  367 GHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI  405 (545)
T ss_pred             CCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence               111222233457888999998888888877774443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.8e-14  Score=115.01  Aligned_cols=170  Identities=18%  Similarity=0.204  Sum_probs=115.6

Q ss_pred             CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC---CcEEEEeCCCceee--eeecCCCcceEEEEECCC
Q psy4391          48 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---KTLKIWELSSGKCL--KTLKGHSNYVFCCNFNPQ  122 (231)
Q Consensus        48 dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~d~~~~~~~--~~~~~~~~~v~~~~~~~~  122 (231)
                      +..|.+||..... ...+..+...+....|+|||+.|+.++.+   ..|++||+.+++..  ..+.++   .....|+|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence            4688999885444 45566667778999999999999887643   46999999887543  223332   335789999


Q ss_pred             CCEEEEee-cCCcEE--EEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe-cCCeEEEEeCCCCceeeeeecCCCCC
Q psy4391         123 SNLIVSGS-FDESVR--IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQCLKTLIDDDNPP  198 (231)
Q Consensus       123 ~~~l~~~~-~d~~i~--v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~  198 (231)
                      |+.|+.+. .+|.+.  +||+.+++. ..+..+...+....|+|||+.|+..+ .+|...+|++............. . 
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~-  335 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G-  335 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C-
Confidence            99888764 577654  557766653 44555566678899999999877554 56777777654322112222222 1 


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         199 VSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       199 i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                       ....|+|||++|++.+.++ +.+||..
T Consensus       336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~  361 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDN-VVKQDLT  361 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCC-EEEEECC
Confidence             3467999999999887755 5558853

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=3.2e-13  Score=108.22  Aligned_cols=195  Identities=19%  Similarity=0.205  Sum_probs=127.7

Q ss_pred             ccccceEEEEECCCCCEEEEEeCC---CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEE-ecCCC--cEEEEeC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVS-GSDDK--TLKIWEL   98 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~d---g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~g--~i~~~d~   98 (231)
                      .+...+....|+|||+.|+..+.+   ..|.+|+..++.... +...........|+|||+.|+. ...+|  .|++||+
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~  274 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL  274 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence            455678899999999988765433   368888987775433 3333334556899999998864 44444  6888899


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeec-CC--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC-
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-  174 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-  174 (231)
                      ++++... +..+........|+|+|+.++..+. ++  .|+++|+.+++.. .+...........|+|+|+.++....+ 
T Consensus       275 ~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~  352 (430)
T PRK00178        275 ASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQD  352 (430)
T ss_pred             CCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccC
Confidence            8876443 3333334456789999998776654 33  5777888777643 222222233457899999998876643 


Q ss_pred             C--eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC-C--eEEEEeC
Q psy4391         175 G--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-N--TLKLWDS  225 (231)
Q Consensus       175 g--~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d-~--~v~vwd~  225 (231)
                      +  .|.++|+.+++. ..+... . ......|+|||++++..+.+ +  .+.+++.
T Consensus       353 ~~~~l~~~dl~tg~~-~~lt~~-~-~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        353 GNFHVAAQDLQRGSV-RILTDT-S-LDESPSVAPNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             CceEEEEEECCCCCE-EEccCC-C-CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            3  578889988764 323221 1 12245799999999887754 3  4555554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=2.9e-13  Score=108.43  Aligned_cols=171  Identities=16%  Similarity=0.189  Sum_probs=120.2

Q ss_pred             cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC---CCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEE
Q psy4391          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD---DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (231)
Q Consensus        50 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (231)
                      .|.++|.. +...+.+..+...+...+|+|||+.|+..+.   +..|++||+.+++.. .+......+....|+|+|+.|
T Consensus       183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence            67777764 4444556666778999999999999887653   468999999887653 333344456678999999877


Q ss_pred             E-EeecCCc--EEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec-CC--eEEEEeCCCCceeeeeecCCCCCeE
Q psy4391         127 V-SGSFDES--VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVS  200 (231)
Q Consensus       127 ~-~~~~d~~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~i~  200 (231)
                      + +.+.++.  |++||+.++.. ..+..+........|+|||+.++..+. +|  .|.++|+.+++. +.+... ...+.
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~-~~~~~  337 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFG-GGRYS  337 (435)
T ss_pred             EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecC-CCccc
Confidence            6 4455554  77889987764 445555555677899999998887663 33  688889876654 333322 23345


Q ss_pred             EEEECCCCCEEEEEeCC---CeEEEEeC
Q psy4391         201 FVKFSPNGKYILAATLD---NTLKLWDS  225 (231)
Q Consensus       201 ~~~~s~~g~~l~~~s~d---~~v~vwd~  225 (231)
                      ...|+|||++|+..+.+   ..|.+||.
T Consensus       338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~  365 (435)
T PRK05137        338 TPVWSPRGDLIAFTKQGGGQFSIGVMKP  365 (435)
T ss_pred             CeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence            67899999999887653   36777775

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.64  E-value=1e-12  Score=102.41  Aligned_cols=187  Identities=19%  Similarity=0.214  Sum_probs=130.1

Q ss_pred             CEEE-EEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEE
Q psy4391          40 EWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCN  118 (231)
Q Consensus        40 ~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~  118 (231)
                      ++++ +-..+|.|.+.|..+.+....+......-..+.++|||+++++++.||.|.++|+.+.+.+..++.... ...++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~   84 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIA   84 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEE
Confidence            4443 455689999999999988888876544344578999999999999999999999999999988886544 56899


Q ss_pred             ECCCCCEEEEee-cCCcEEEEECCCCceeeeccCC-------CCCeEEEEEcCCCCeEEEEec-CCeEEEEeCCCCceee
Q psy4391         119 FNPQSNLIVSGS-FDESVRIWDVRTGKCLKTLPAH-------SDPVSAVHFNRDGSLIVSSSY-DGLCRIWDTASGQCLK  189 (231)
Q Consensus       119 ~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~  189 (231)
                      ++++|+++++++ ..+.+.++|.++.+.++.+...       +..+.++..+|....++..-. .+.|.+.|....+.+.
T Consensus        85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen   85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence            999999998775 6889999999999888776543       235677777888886665555 4899888987665443


Q ss_pred             eeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCC
Q psy4391         190 TLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSYP  227 (231)
Q Consensus       190 ~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~~  227 (231)
                      ..............|+|+|+|++++. .++.|-++|..+
T Consensus       165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~  203 (369)
T PF02239_consen  165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT  203 (369)
T ss_dssp             EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred             eeeecccccccccccCcccceeeecccccceeEEEeecc
Confidence            32222333456788999999887654 467888888654

...

>KOG2139|consensus

Probab=99.63  E-value=1.9e-13  Score=101.22  Aligned_cols=200  Identities=16%  Similarity=0.314  Sum_probs=131.9

Q ss_pred             ccceEEEEECCCC-CEEEEEeCCCcEEEeecCCC-cEEE-----------EE--ecccccEEEEEECCCCCEEEEecC-C
Q psy4391          27 TKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDG-KFEK-----------TI--SGHKLGISDVAWSSDSRLLVSGSD-D   90 (231)
Q Consensus        27 ~~~i~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~-~~~~-----------~~--~~~~~~v~~~~~~~~~~~l~~~~~-~   90 (231)
                      ...|++++|-|.+ +.|+.|.. +-|.+|..... ...+           .+  .+| ..|+++.|.+||..+++++- +
T Consensus       140 QrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs  217 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS  217 (445)
T ss_pred             hcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence            5689999999954 46777665 45778876421 1111           11  123 57999999999999988775 6


Q ss_pred             CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEE
Q psy4391          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS  170 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  170 (231)
                      ..|.+||.+++..+.......+.+.-+.|+||+.+++.+.-|+..++|+..............+.|...+|+|+|+.|+-
T Consensus       218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf  297 (445)
T KOG2139|consen  218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLF  297 (445)
T ss_pred             ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEE
Confidence            78999999998766555334456778899999999999999999999965433333333344568999999999997764


Q ss_pred             EecCCeEEEEeCC----CCcee------ee-----e-----e---cCCCCCeEEEEECCCCCEEEEEeCCC--------e
Q psy4391         171 SSYDGLCRIWDTA----SGQCL------KT-----L-----I---DDDNPPVSFVKFSPNGKYILAATLDN--------T  219 (231)
Q Consensus       171 ~~~dg~i~v~d~~----~~~~~------~~-----~-----~---~~~~~~i~~~~~s~~g~~l~~~s~d~--------~  219 (231)
                      .... .-.+|.+.    .....      ..     +     .   ........+++|+|.|.+||+.-..+        .
T Consensus       298 ~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~  376 (445)
T KOG2139|consen  298 ACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLH  376 (445)
T ss_pred             EEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhh
Confidence            4322 22233221    10000      00     0     0   00123467899999999999865433        4


Q ss_pred             EEEEeCCCCC
Q psy4391         220 LKLWDSYPCL  229 (231)
Q Consensus       220 v~vwd~~~~~  229 (231)
                      |.+||+....
T Consensus       377 i~~fdtr~sp  386 (445)
T KOG2139|consen  377 ISRFDTRKSP  386 (445)
T ss_pred             hhhhcccccC
Confidence            6677764433

>KOG3881|consensus

Probab=99.62  E-value=4.5e-14  Score=105.22  Aligned_cols=177  Identities=15%  Similarity=0.298  Sum_probs=136.3

Q ss_pred             cceEEEEECCCCCEE-EEEeCC--CcEEEeecCCCcEEEEEec-------cccc--EEEEEECCC--CCEEEEecCCCcE
Q psy4391          28 KAVSSVKFSPNGEWL-ASSSAD--KLIKIWGAYDGKFEKTISG-------HKLG--ISDVAWSSD--SRLLVSGSDDKTL   93 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l-~~~~~d--g~i~i~~~~~~~~~~~~~~-------~~~~--v~~~~~~~~--~~~l~~~~~~g~i   93 (231)
                      ..+..+.-++....| ++|+..  ..+.+||.+..+...+-+.       -..+  ++++.|.+.  ...++++..-+.+
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv  228 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV  228 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence            345566666655554 558887  7899999987644333221       1112  456788877  7889999999999


Q ss_pred             EEEeCCCc-eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeee-ccCCCCCeEEEEEcCCCCeEEEE
Q psy4391          94 KIWELSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSS  171 (231)
Q Consensus        94 ~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~  171 (231)
                      ++||...+ +++..+......+.++...|.++++++|...+.+..||++.+..... +....+.++++..+|..++++++
T Consensus       229 R~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~  308 (412)
T KOG3881|consen  229 RLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASC  308 (412)
T ss_pred             EEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEee
Confidence            99999865 46777776778899999999999999999999999999999987766 77778999999999999999999


Q ss_pred             ecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECC
Q psy4391         172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP  206 (231)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~  206 (231)
                      +-|..++|+|+.+.+.+.....  .+.++.+-+.+
T Consensus       309 GLDRyvRIhD~ktrkll~kvYv--Ks~lt~il~~~  341 (412)
T KOG3881|consen  309 GLDRYVRIHDIKTRKLLHKVYV--KSRLTFILLRD  341 (412)
T ss_pred             ccceeEEEeecccchhhhhhhh--hccccEEEecC
Confidence            9999999999998665554322  23344454433

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=6.2e-13  Score=105.90  Aligned_cols=196  Identities=16%  Similarity=0.088  Sum_probs=121.3

Q ss_pred             ccceEEEEECCCCCEE---EEEeCCC--cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC-CC--c--EEEE
Q psy4391          27 TKAVSSVKFSPNGEWL---ASSSADK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-DK--T--LKIW   96 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l---~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g--~--i~~~   96 (231)
                      ...+.+.+|+|||+.+   ++...+|  .|.+.++.++... .+..........+|+|||+.|+.... +|  .  +..|
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~  262 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF  262 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence            4456788999999853   2444454  4666677665443 33333444556899999998876543 23  3  3446


Q ss_pred             eCCCc---eeeeeecCCCcceEEEEECCCCCEEEEee-cCCc--EEEEECCC-CceeeeccCCCCCeEEEEEcCCCCeEE
Q psy4391          97 ELSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDES--VRIWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus        97 d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~--i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~  169 (231)
                      ++..+   +..+.............|+|||+.|+..+ .+|.  |+++++.. +.....+......+....|+|||+.|+
T Consensus       263 ~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~La  342 (428)
T PRK01029        263 SLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIA  342 (428)
T ss_pred             ecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEE
Confidence            76542   32223322222334678999999877665 4564  44445542 222344444445667789999999888


Q ss_pred             EEecC---CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeC
Q psy4391         170 SSSYD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL---DNTLKLWDS  225 (231)
Q Consensus       170 ~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~---d~~v~vwd~  225 (231)
                      ..+.+   ..|.+||+.+++... +... ...+....|+|||++|+..+.   ...|.++|.
T Consensus       343 f~~~~~g~~~I~v~dl~~g~~~~-Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        343 FCSVIKGVRQICVYDLATGRDYQ-LTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             EEEcCCCCcEEEEEECCCCCeEE-ccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            76543   378999998887533 3222 234566889999998876554   246777775

>KOG2111|consensus

Probab=99.61  E-value=4.4e-12  Score=92.52  Aligned_cols=155  Identities=21%  Similarity=0.330  Sum_probs=114.7

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecC-CCcEEEEEeccc--ccEEEEEECCCCCEEEE-ecCCCcEEEEeCCCce
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHK--LGISDVAWSSDSRLLVS-GSDDKTLKIWELSSGK  102 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~-~~~~g~i~~~d~~~~~  102 (231)
                      ..+|.++.+.++  +|++.- .+.|.+|... +.+....+....  .++.+++-..+...||. |-.-|.|++-|+...+
T Consensus        94 ~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~  170 (346)
T KOG2111|consen   94 NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK  170 (346)
T ss_pred             ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC
Confidence            456777777654  555543 6789999876 445555444322  23333332333344443 3446899999987644


Q ss_pred             e--eeeecCCCcceEEEEECCCCCEEEEeecCCc-EEEEECCCCceeeeccCC--CCCeEEEEEcCCCCeEEEEecCCeE
Q psy4391         103 C--LKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-VRIWDVRTGKCLKTLPAH--SDPVSAVHFNRDGSLIVSSSYDGLC  177 (231)
Q Consensus       103 ~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i  177 (231)
                      .  ...+.+|.+.|.+++.+-+|.++||++..|+ |++||..+|..+..+...  ...+.+|+|+|+..+|++.+..|++
T Consensus       171 ~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTl  250 (346)
T KOG2111|consen  171 PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTL  250 (346)
T ss_pred             cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeE
Confidence            3  3678899999999999999999999999997 789999999998887644  3468999999999999999999999


Q ss_pred             EEEeCCC
Q psy4391         178 RIWDTAS  184 (231)
Q Consensus       178 ~v~d~~~  184 (231)
                      ++|.++.
T Consensus       251 HiF~l~~  257 (346)
T KOG2111|consen  251 HIFSLRD  257 (346)
T ss_pred             EEEEeec
Confidence            9998765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=1.1e-12  Score=105.19  Aligned_cols=193  Identities=17%  Similarity=0.177  Sum_probs=122.8

Q ss_pred             ccceEEEEECCCCCEEEEEeC-CC--cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEE-ecCCCc--EEEEeCCC
Q psy4391          27 TKAVSSVKFSPNGEWLASSSA-DK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVS-GSDDKT--LKIWELSS  100 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~g~--i~~~d~~~  100 (231)
                      ...+....|+|||++|+..+. ++  .|.+|+..+++... +..........+|+|||+.|+. ...++.  |+++|+.+
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t  295 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT  295 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence            445678999999998876543 33  57788887765433 3322333456799999998865 455564  77888887


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEeec-CC--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC-C-
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-G-  175 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-  175 (231)
                      ++.. .+..+........|+|+++.|+..+. ++  .|+++|+.+++... +..........+|+|||++++..+.+ + 
T Consensus       296 g~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~  373 (448)
T PRK04792        296 KALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGK  373 (448)
T ss_pred             CCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCc
Confidence            7643 33334444566789999998876653 33  47777887776433 22222233456899999998776543 3 


Q ss_pred             -eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC-C--eEEEEeC
Q psy4391         176 -LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-N--TLKLWDS  225 (231)
Q Consensus       176 -~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d-~--~v~vwd~  225 (231)
                       .|.++|+.+++. ..+... . ......|+|+|+.|+..+.+ +  .+.+++.
T Consensus       374 ~~I~~~dl~~g~~-~~lt~~-~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        374 FNIARQDLETGAM-QVLTST-R-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             eEEEEEECCCCCe-EEccCC-C-CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence             466678887764 222211 1 11234799999988876654 3  3555554

>KOG1310|consensus

Probab=99.61  E-value=3.4e-15  Score=115.79  Aligned_cols=164  Identities=26%  Similarity=0.487  Sum_probs=128.4

Q ss_pred             EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee-cCCCcceEEEEECCC--CCEEEEeecCCcEEE
Q psy4391          61 FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL-KGHSNYVFCCNFNPQ--SNLIVSGSFDESVRI  137 (231)
Q Consensus        61 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v  137 (231)
                      +.+++.+|.+-|.++.|+.+|.+|++|++|-.+.|||.-..+.++.+ .+|...|.++.|-|.  .+++++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            34678899999999999999999999999999999999877766655 478889999999884  578999999999999


Q ss_pred             EECCCC----------ceeeeccCCCCCeEEEEEcCCC-CeEEEEecCCeEEEEeCCCCce-------eeeeecC--CCC
Q psy4391         138 WDVRTG----------KCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQC-------LKTLIDD--DNP  197 (231)
Q Consensus       138 ~d~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~-------~~~~~~~--~~~  197 (231)
                      +|+...          .....+..|...|..++-.|++ ..+.+++.||+++-+|++....       ...+...  .--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            999742          2233345566778888889988 6788999999999999987321       1111100  112


Q ss_pred             CeEEEEECCCC-CEEEEEeCCCeEEEEe
Q psy4391         198 PVSFVKFSPNG-KYILAATLDNTLKLWD  224 (231)
Q Consensus       198 ~i~~~~~s~~g-~~l~~~s~d~~v~vwd  224 (231)
                      ...++.++|.. .+|++|+.|-.+++||
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhh
Confidence            34678889976 4788899999999999

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=3.4e-13  Score=107.67  Aligned_cols=172  Identities=20%  Similarity=0.222  Sum_probs=112.2

Q ss_pred             cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC---CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEE
Q psy4391          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (231)
Q Consensus        50 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (231)
                      .|.++|. ++.....+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++.... ...........|+|+|+.|
T Consensus       177 ~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~l  254 (427)
T PRK02889        177 QLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRTL  254 (427)
T ss_pred             EEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEE
Confidence            4666665 344444455556678899999999998876542   4699999998765433 2223345578999999888


Q ss_pred             EE-eecCCcEEEE--ECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec-CCeEEEE--eCCCCceeeeeecCCCCCeE
Q psy4391         127 VS-GSFDESVRIW--DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGLCRIW--DTASGQCLKTLIDDDNPPVS  200 (231)
Q Consensus       127 ~~-~~~d~~i~v~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~v~--d~~~~~~~~~~~~~~~~~i~  200 (231)
                      +. .+.++...+|  |+..+. ...+..+........|+|||+.++..+. +|...+|  ++.+++.. .+.... ....
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g-~~~~  331 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTG-SYNT  331 (427)
T ss_pred             EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCC-CCcC
Confidence            64 5667765555  555444 4455444455567889999998876554 4555555  55555432 222221 2223


Q ss_pred             EEEECCCCCEEEEEeCCC---eEEEEeCC
Q psy4391         201 FVKFSPNGKYILAATLDN---TLKLWDSY  226 (231)
Q Consensus       201 ~~~~s~~g~~l~~~s~d~---~v~vwd~~  226 (231)
                      ..+|+|||++++..+.++   .|.+||..
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~  360 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLA  360 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECC
Confidence            578999999999877654   69999864

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=2.2e-12  Score=102.99  Aligned_cols=171  Identities=13%  Similarity=0.128  Sum_probs=114.4

Q ss_pred             cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec---CCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEE
Q psy4391          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS---DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (231)
Q Consensus        50 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (231)
                      .|.++|...... +.+..+...+...+|+|||+.|+..+   .+..+.+|++.+++..... ..........|+|||+.|
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEE
Confidence            577777754433 34444556788999999999988654   2457999999887543322 222223457899999988


Q ss_pred             EEe-ecCC--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC-C--eEEEEeCCCCceeeeeecCCCCCeE
Q psy4391         127 VSG-SFDE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-G--LCRIWDTASGQCLKTLIDDDNPPVS  200 (231)
Q Consensus       127 ~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~i~  200 (231)
                      +.. +.++  .|++||+++++.. .+..+...+....|+|||+.|+..+.+ +  .|.++|+.+++.. .+.. ......
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~  334 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQNQ  334 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCCCcc
Confidence            765 3344  5889999887653 344444566788999999988776654 4  4555577766532 3322 222345


Q ss_pred             EEEECCCCCEEEEEeCC---CeEEEEeC
Q psy4391         201 FVKFSPNGKYILAATLD---NTLKLWDS  225 (231)
Q Consensus       201 ~~~~s~~g~~l~~~s~d---~~v~vwd~  225 (231)
                      ...|+|||++++..+.+   ..|.+||.
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl  362 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDL  362 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEEC
Confidence            67899999999887654   35778885

>KOG4547|consensus

Probab=99.59  E-value=9.7e-13  Score=102.86  Aligned_cols=185  Identities=18%  Similarity=0.327  Sum_probs=147.0

Q ss_pred             CCCCEEEEEeCCCcEEEeecCCCcEEEEEec---ccccEEEEEEC--------------------CCCCEEEEecCCCcE
Q psy4391          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISG---HKLGISDVAWS--------------------SDSRLLVSGSDDKTL   93 (231)
Q Consensus        37 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~---~~~~v~~~~~~--------------------~~~~~l~~~~~~g~i   93 (231)
                      |...++|....||.+++|+...++....+..   -.+......|.                    .+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4567889899999999999988877766642   12334444441                    233467778889999


Q ss_pred             EEEeCCCceeeeeec--CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE
Q psy4391          94 KIWELSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  171 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  171 (231)
                      .+|+...++....+.  .|.+.+.++.++.+-..|.+++.|..+.+|+....+.++.+......+.+++++||+..++++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            999999988776665  567888888888888999999999999999999999999988888889999999999999988


Q ss_pred             ecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCC-----CCEEEEEe-CCCeEEEEe
Q psy4391         172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-----GKYILAAT-LDNTLKLWD  224 (231)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~s-~d~~v~vwd  224 (231)
                      +  ++|++||+++++.+..+. ++.++|..+.|..+     |.+++++. .+.-+.+|-
T Consensus       163 s--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  163 S--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             c--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            6  679999999999887765 56678898888776     67766544 355666664

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=5.3e-13  Score=106.85  Aligned_cols=172  Identities=18%  Similarity=0.151  Sum_probs=117.5

Q ss_pred             cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC---CCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEE
Q psy4391          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD---DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (231)
Q Consensus        50 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (231)
                      .|.+||... .....+..+...+...+|+|||+.|+..+.   ...|++||+.+++.... ...........|+|+|+.+
T Consensus       185 ~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        185 ALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCEE
Confidence            578888753 334455556667889999999999987763   34699999988765332 2223334467899999877


Q ss_pred             EE-eecCC--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec-CC--eEEEEeCCCCceeeeeecCCCCCeE
Q psy4391         127 VS-GSFDE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVS  200 (231)
Q Consensus       127 ~~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~i~  200 (231)
                      +. .+.++  .|++||+.+++. ..+..+.......+|+|||+.++..+. +|  .+.++|+.+++... +... .....
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~~~  339 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNYNA  339 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCCcc
Confidence            64 44454  599999988764 444444445567899999998887663 44  47777877765432 2222 22234


Q ss_pred             EEEECCCCCEEEEEeCCC---eEEEEeCC
Q psy4391         201 FVKFSPNGKYILAATLDN---TLKLWDSY  226 (231)
Q Consensus       201 ~~~~s~~g~~l~~~s~d~---~v~vwd~~  226 (231)
                      ..+|+|||++++..+.++   .|.+||..
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~  368 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLS  368 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECC
Confidence            578999999998876543   68999863

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.58  E-value=5.7e-12  Score=98.20  Aligned_cols=195  Identities=17%  Similarity=0.303  Sum_probs=125.5

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec-CCCcEEEEeCCCceeeeeecC
Q psy4391          31 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWELSSGKCLKTLKG  109 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~~~d~~~~~~~~~~~~  109 (231)
                      ..+.|+|||+++++++.||.|.++|..+.+...++.... ....+++++||+++++++ ..+.+.++|.++.+.++.+..
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~  118 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT  118 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence            457899999999999999999999999999888887543 467899999999988665 578999999887665543321


Q ss_pred             C------------------C---------------------------------cceEEEEECCCCCEEEEe-ecCCcEEE
Q psy4391         110 H------------------S---------------------------------NYVFCCNFNPQSNLIVSG-SFDESVRI  137 (231)
Q Consensus       110 ~------------------~---------------------------------~~v~~~~~~~~~~~l~~~-~~d~~i~v  137 (231)
                      .                  .                                 .......|+|++++++.+ ..+..+-+
T Consensus       119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~v  198 (369)
T PF02239_consen  119 GGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAV  198 (369)
T ss_dssp             -EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred             ccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEE
Confidence            0                  0                                 011234678888877665 45567878


Q ss_pred             EECCCCceeeecc-------------------------------------------------------CCCCCeEEEEEc
Q psy4391         138 WDVRTGKCLKTLP-------------------------------------------------------AHSDPVSAVHFN  162 (231)
Q Consensus       138 ~d~~~~~~~~~~~-------------------------------------------------------~~~~~v~~~~~~  162 (231)
                      +|.++++.+..+.                                                       ...++ .-+.-+
T Consensus       199 iD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th  277 (369)
T PF02239_consen  199 IDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH  277 (369)
T ss_dssp             EETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--
T ss_pred             EeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC
Confidence            8877654332110                                                       00111 224568


Q ss_pred             CCCCeEEEE----ecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC--CeEEEEeCCC
Q psy4391         163 RDGSLIVSS----SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD--NTLKLWDSYP  227 (231)
Q Consensus       163 ~~~~~l~~~----~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d--~~v~vwd~~~  227 (231)
                      |+++++.+.    ...+.|.++|..+.+....+.......+..+.|+++|+++..+..+  +.|.|||...
T Consensus       278 P~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  278 PDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred             CCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence            999999887    3447999999999876666644333447889999999987776654  3799999754

...

>KOG0974|consensus

Probab=99.58  E-value=2.7e-13  Score=112.07  Aligned_cols=194  Identities=21%  Similarity=0.256  Sum_probs=152.2

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEeccccc----EEEEEECCCCCEEEEecCCCcEEEEeCCCceeeee
Q psy4391          31 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG----ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      ....+..+.+.++....+..+.+||...+.....+......    ..-+..+++.-++++|+--+.|.+|+....+.-..
T Consensus        91 ~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~  170 (967)
T KOG0974|consen   91 FGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR  170 (967)
T ss_pred             cccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcce
Confidence            33445556677888888999999998766655554432221    12234466667889999999999999873332235


Q ss_pred             ecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceee-eccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCC
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK-TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG  185 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  185 (231)
                      +.+|.+.+..+.++.+|.++++.+.|+.+++|++.+++... ....|...+..++|+|+  .+++++.|.+.++|+... 
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-  247 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-  247 (967)
T ss_pred             ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-
Confidence            77899999999999999999999999999999999887655 55688999999999998  899999999999996543 


Q ss_pred             ceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         186 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       186 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +.+..+..+....+..++..++...+++++.|+.+++||..-
T Consensus       248 ~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  248 TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            344455556666788899999999999999999999999744

>KOG4227|consensus

Probab=99.54  E-value=3.3e-13  Score=101.14  Aligned_cols=163  Identities=18%  Similarity=0.292  Sum_probs=130.0

Q ss_pred             EEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC------ceeeeeecC-CCcceEEEEECCCCCEEEEeecCCcE
Q psy4391          63 KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS------GKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESV  135 (231)
Q Consensus        63 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i  135 (231)
                      +.+.+|.+.|.++.|+.++++|++|+.|..+++|+++.      .+++..... |.+.|.+++|+..++++++|..+++|
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            34567888999999999999999999999999999863      233333333 44789999999999999999999999


Q ss_pred             EEEECCCCceeeeccC--CCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeee--ecCCCCCeEEEEECCCCC-E
Q psy4391         136 RIWDVRTGKCLKTLPA--HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNGK-Y  210 (231)
Q Consensus       136 ~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~~~~~~i~~~~~s~~g~-~  210 (231)
                      .+-|+++.+.+..+..  ..+.|+.+..+|..+.+++.+.++.|.+||.+........  ..........+-|+|... +
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            9999999887766532  2458999999999999999999999999999876532222  223344566778999765 6


Q ss_pred             EEEEeCCCeEEEEeC
Q psy4391         211 ILAATLDNTLKLWDS  225 (231)
Q Consensus       211 l~~~s~d~~v~vwd~  225 (231)
                      |++.+..+-+.+||.
T Consensus       210 i~~~~~~~G~~~~D~  224 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDR  224 (609)
T ss_pred             EEeccccCCCCceee
Confidence            677788889999995

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.52  E-value=1.6e-11  Score=98.14  Aligned_cols=172  Identities=18%  Similarity=0.194  Sum_probs=116.6

Q ss_pred             cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC---CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEE
Q psy4391          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (231)
Q Consensus        50 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (231)
                      .|.++|... .....+..+...+....|+|+|++|+.+...   ..|++||+.+++..... ........+.|+|+++.|
T Consensus       171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCCccceEECCCCCEE
Confidence            466777643 3344455455568888999999999876543   47999999887543332 233445568899999877


Q ss_pred             EEe-ecCC--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC-C--eEEEEeCCCCceeeeeecCCCCCeE
Q psy4391         127 VSG-SFDE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-G--LCRIWDTASGQCLKTLIDDDNPPVS  200 (231)
Q Consensus       127 ~~~-~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~i~  200 (231)
                      +.. +.++  .|++||+.+++. ..+..+........|+||++.|+..+.. +  .|.++|+.+++.. .+.. ......
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~-~~~~~~  325 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF-RGGYNA  325 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec-CCCCcc
Confidence            644 4443  588899987754 3344444445567899999988766543 3  6888888876643 2322 223345


Q ss_pred             EEEECCCCCEEEEEeCCC---eEEEEeCC
Q psy4391         201 FVKFSPNGKYILAATLDN---TLKLWDSY  226 (231)
Q Consensus       201 ~~~~s~~g~~l~~~s~d~---~v~vwd~~  226 (231)
                      ...|+|+|++++.++.++   .|.+||..
T Consensus       326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~  354 (417)
T TIGR02800       326 SPSWSPDGDLIAFVHREGGGFNIAVMDLD  354 (417)
T ss_pred             CeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence            678999999999988775   78888853

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0644|consensus

Probab=99.51  E-value=1.6e-14  Score=117.03  Aligned_cols=156  Identities=27%  Similarity=0.526  Sum_probs=123.3

Q ss_pred             EEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCC
Q psy4391          64 TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG  143 (231)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  143 (231)
                      .+.+|...|.+..|...|.+|+++++|..++||.++++.+....++|...++.++.+.+...+++++.|..|++|-++.+
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            34568888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeee----ecCCCCCeEEEEECCCCCEEEEEeCCCe
Q psy4391         144 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSPNGKYILAATLDNT  219 (231)
Q Consensus       144 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~----~~~~~~~i~~~~~s~~g~~l~~~s~d~~  219 (231)
                      ..+..+..|++.|++++|+|-.    +.+.||++++||.+- ......    .......+.++.|-..+.-+++++.|+.
T Consensus       265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e  339 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE  339 (1113)
T ss_pred             chHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence            9999999999999999999944    677899999999871 110000    0011122333444455555555555555


Q ss_pred             EEEEe
Q psy4391         220 LKLWD  224 (231)
Q Consensus       220 v~vwd  224 (231)
                      ...|.
T Consensus       340 a~n~e  344 (1113)
T KOG0644|consen  340 ARNHE  344 (1113)
T ss_pred             cccch
Confidence            55543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.50  E-value=3.1e-10  Score=88.34  Aligned_cols=198  Identities=16%  Similarity=0.308  Sum_probs=129.2

Q ss_pred             cceEEEEECCCCCEEEEEeC-CCcEEEeecCC-CcEEEE---Ee----------cccccEEEEEECCCCCEEEEecC-CC
Q psy4391          28 KAVSSVKFSPNGEWLASSSA-DKLIKIWGAYD-GKFEKT---IS----------GHKLGISDVAWSSDSRLLVSGSD-DK   91 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~~~~-~g   91 (231)
                      ..-..++++|++++|+++.. +|.+.++++.. +.....   +.          ........+.++|+++++++... ..
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D  166 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD  166 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence            34467899999999988775 78999999876 333222   11          11234788999999998877543 45


Q ss_pred             cEEEEeCCCce--ee--eeec-CCCcceEEEEECCCCCEEEEeec-CCcEEEEECC--CCce--eeeccC------CCCC
Q psy4391          92 TLKIWELSSGK--CL--KTLK-GHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVR--TGKC--LKTLPA------HSDP  155 (231)
Q Consensus        92 ~i~~~d~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~--~~~~--~~~~~~------~~~~  155 (231)
                      .|.+|+++...  ..  ..+. ........+.|+|++++++...+ ++.|.++++.  .+..  +..+..      ....
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence            79999987644  21  1222 22355778999999998877654 6779999887  3321  111111      1225


Q ss_pred             eEEEEEcCCCCeEEEEec-CCeEEEEeCC--CCce--eeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCC
Q psy4391         156 VSAVHFNRDGSLIVSSSY-DGLCRIWDTA--SGQC--LKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSY  226 (231)
Q Consensus       156 v~~~~~~~~~~~l~~~~~-dg~i~v~d~~--~~~~--~~~~~~~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~~  226 (231)
                      ...++++|||++|+++.. .+.|.+|++.  +++.  +..+... ...-..++++|+|++|+++.. ++.|.+|+..
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            788999999999887664 5789999983  3332  2222222 223467899999999998875 6799999753

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1587|consensus

Probab=99.49  E-value=1.2e-11  Score=99.68  Aligned_cols=176  Identities=22%  Similarity=0.245  Sum_probs=120.9

Q ss_pred             CcEEEeecCCCcEEEEEecccccEEEEEECCC-CCEEEEecCCCcEEEEeCCCcee--eee----ecCCCcceEEEEECC
Q psy4391          49 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSGKC--LKT----LKGHSNYVFCCNFNP  121 (231)
Q Consensus        49 g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~~~d~~~~~~--~~~----~~~~~~~v~~~~~~~  121 (231)
                      +.+.+|++...............|.++.|+|. ...++.|+.+|.|.+||+..+..  ...    ...|...+..+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            47899999876444444444678999999995 45677888899999999987553  211    235677888888865


Q ss_pred             C--CCEEEEeecCCcEEEEECCCCce------------------------------------------------------
Q psy4391         122 Q--SNLIVSGSFDESVRIWDVRTGKC------------------------------------------------------  145 (231)
Q Consensus       122 ~--~~~l~~~~~d~~i~v~d~~~~~~------------------------------------------------------  145 (231)
                      +  +.-+++++.||.|..|+++.-..                                                      
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            3  35589999999999998753110                                                      


Q ss_pred             ---------eeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCC-CCceeeeeecCCCCCeEEEEECCCCC-EEEEE
Q psy4391         146 ---------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGK-YILAA  214 (231)
Q Consensus       146 ---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~  214 (231)
                               ...+..|.++|+++.++|=+..++..+.|.++++|.-. ....+..+. .....+..++|||-.. .++++
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~  460 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATV  460 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEE
Confidence                     00112345677888888866554444448899999766 433333332 2233488899999875 55667


Q ss_pred             eCCCeEEEEeC
Q psy4391         215 TLDNTLKLWDS  225 (231)
Q Consensus       215 s~d~~v~vwd~  225 (231)
                      ..||.|.+||.
T Consensus       461 d~~G~l~iWDL  471 (555)
T KOG1587|consen  461 DGDGNLDIWDL  471 (555)
T ss_pred             cCCCceehhhh
Confidence            77999999996

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.1e-10  Score=92.68  Aligned_cols=181  Identities=16%  Similarity=0.099  Sum_probs=117.2

Q ss_pred             ceEEEEECCCCCE-EEEEeC---CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEe-cC--CCcEEEEeCCCc
Q psy4391          29 AVSSVKFSPNGEW-LASSSA---DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG-SD--DKTLKIWELSSG  101 (231)
Q Consensus        29 ~i~~~~~~~~~~~-l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~--~g~i~~~d~~~~  101 (231)
                      .+....|+|||+. ++..+.   +..|.++|..+++...... .........|+|||+.++.. +.  +..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            5678999999985 554333   3468888887776544333 34445667899999877643 33  357888898877


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeec-CC--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC----
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD----  174 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----  174 (231)
                      +..+ +...........|+|||+.|+..+. .+  .|.++|+.+++....... ...  ...|+|||+.++.....    
T Consensus       268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~  343 (419)
T PRK04043        268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNE  343 (419)
T ss_pred             cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcc
Confidence            6433 3323222334579999987776653 23  588889887765333221 111  24899999988766543    


Q ss_pred             -----CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q psy4391         175 -----GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (231)
Q Consensus       175 -----g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d  217 (231)
                           ..|.+.|+.+++. +.+... . ......|+|||+.++..+.+
T Consensus       344 ~~~~~~~I~v~d~~~g~~-~~LT~~-~-~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        344 FGKNTFNLYLISTNSDYI-RRLTAN-G-VNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             cCCCCcEEEEEECCCCCe-EECCCC-C-CcCCeEECCCCCEEEEEEcc
Confidence                 3688889888764 333322 1 22357899999988777654

>KOG2321|consensus

Probab=99.46  E-value=6.8e-12  Score=98.21  Aligned_cols=188  Identities=18%  Similarity=0.291  Sum_probs=142.1

Q ss_pred             EEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecC---
Q psy4391          33 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG---  109 (231)
Q Consensus        33 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~---  109 (231)
                      ++++.-..-|+.++....|+-++++.|+....+....+.+..+..++-..+|++|+.+|.|..||..+...+..+..   
T Consensus       139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~  218 (703)
T KOG2321|consen  139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS  218 (703)
T ss_pred             ccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc
Confidence            44443333344555566788888888888888877778899999999999999999999999999987665544431   


Q ss_pred             ---CC-----cceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec-cCCCCCeEEEEEcCCCC--eEEEEecCCeEE
Q psy4391         110 ---HS-----NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-PAHSDPVSAVHFNRDGS--LIVSSSYDGLCR  178 (231)
Q Consensus       110 ---~~-----~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~  178 (231)
                         +.     ..|+++.|+.+|-.+++|+.+|.+.+||+++.+++..- ....-+|..+.|.+.+.  .+++ .....++
T Consensus       219 v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~k  297 (703)
T KOG2321|consen  219 VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILK  297 (703)
T ss_pred             cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhh
Confidence               22     23889999999999999999999999999988765442 33456888999977633  3333 3346889


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      +||-.+++....+..  ...++.+++-|++-+++++-.+..+..|
T Consensus       298 iWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  298 IWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             hcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeE
Confidence            999999987776643  3457888999999999988887777766

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.2e-10  Score=93.52  Aligned_cols=172  Identities=13%  Similarity=0.130  Sum_probs=113.1

Q ss_pred             cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC---CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEE
Q psy4391          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (231)
Q Consensus        50 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (231)
                      .|.++|..... ...+..+...+....|+|||+.|+..+.+   ..|.+||+.+++.... ...........|+|+|+.+
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEE
Confidence            36666665433 34454555678889999999998776543   3689999988765432 2222334467899999988


Q ss_pred             EE-eecCC--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec-CC--eEEEEeCCCCceeeeeecCCCCCeE
Q psy4391         127 VS-GSFDE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVS  200 (231)
Q Consensus       127 ~~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~i~  200 (231)
                      +. ...++  .|+++|+.++.. ..+..+........|+|||+.++..+. +|  .|.++|+.+++... +... .....
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~-~~~~~  334 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV-GNYNA  334 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-CCCcc
Confidence            74 34444  588889988764 344444445566789999998776553 33  67778887776433 2221 12223


Q ss_pred             EEEECCCCCEEEEEeCC-C--eEEEEeCC
Q psy4391         201 FVKFSPNGKYILAATLD-N--TLKLWDSY  226 (231)
Q Consensus       201 ~~~~s~~g~~l~~~s~d-~--~v~vwd~~  226 (231)
                      ...|+|+|++++..+.+ +  .|.+||..
T Consensus       335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~  363 (430)
T PRK00178        335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQ  363 (430)
T ss_pred             ceEECCCCCEEEEEEccCCceEEEEEECC
Confidence            46899999999887753 3  57777753

>KOG0974|consensus

Probab=99.45  E-value=1.8e-12  Score=107.22  Aligned_cols=149  Identities=27%  Similarity=0.436  Sum_probs=124.9

Q ss_pred             EEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee-eecCCC
Q psy4391          33 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK-TLKGHS  111 (231)
Q Consensus        33 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~-~~~~~~  111 (231)
                      +.++++.-++++|+.-+.|.+|.....+....+.+|.+.+.++.|+.||.++++.++|+.+++|++++.+... ..-+|.
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs  218 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS  218 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence            3445566688899999999999987544444688999999999999999999999999999999999987655 555789


Q ss_pred             cceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC-CCeEEEEEcCCCCeEEEEecCCeEEEEeCCC
Q psy4391         112 NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       112 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (231)
                      ..+..+.+.|.  .+++++.|-+.++|+.+ +..+..+..|. ..+..++..++...+++++.|+.+++||+..
T Consensus       219 aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  219 ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            99999999998  99999999999999765 34444555553 4688899999888999999999999998754

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=6.1e-11  Score=94.60  Aligned_cols=177  Identities=17%  Similarity=0.186  Sum_probs=108.2

Q ss_pred             ceEEEEECCCCCEEEEEe-CCC----cEEEeecCCC--cEEEEEe-cccccEEEEEECCCCCEEEEec-CCCcEEEE--e
Q psy4391          29 AVSSVKFSPNGEWLASSS-ADK----LIKIWGAYDG--KFEKTIS-GHKLGISDVAWSSDSRLLVSGS-DDKTLKIW--E   97 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~-~dg----~i~i~~~~~~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~g~i~~~--d   97 (231)
                      .....+|+|||+.|+... .+|    .+..|+...+  .....+. .........+|+|||+.|+..+ .+|...+|  +
T Consensus       232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence            345689999999887644 233    2333565432  1222333 2223345679999999887665 45654444  4


Q ss_pred             CCC-ceeeeeecCCCcceEEEEECCCCCEEEEeecC---CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec
Q psy4391          98 LSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD---ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus        98 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                      +.. +.....+......+....|+|+|+.|+....+   ..|.+||+.+++.. .+......+....|+|||+.|+..+.
T Consensus       312 ~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        312 IDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             CcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEEC
Confidence            432 22233344334455678899999988876543   46899999888753 33333345677899999998875433


Q ss_pred             ---CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCC
Q psy4391         174 ---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG  208 (231)
Q Consensus       174 ---dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g  208 (231)
                         ...+.++|+.+++... +.. ....+...+|+|-.
T Consensus       391 ~~g~~~L~~vdl~~g~~~~-Lt~-~~g~~~~p~Ws~~~  426 (428)
T PRK01029        391 NSNESELYLISLITKKTRK-IVI-GSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCceEEEEECCCCCEEE-eec-CCCcccCceecCCC
Confidence               3468888998776433 222 22334567788753

>KOG2315|consensus

Probab=99.43  E-value=1.9e-10  Score=89.95  Aligned_cols=192  Identities=21%  Similarity=0.393  Sum_probs=132.8

Q ss_pred             cccceEEEEECCCCC--EEEE-----EeCCCcEEEeecCCCcEE-----EEEecccccEEEEEECCCCCEEEE-e--cCC
Q psy4391          26 HTKAVSSVKFSPNGE--WLAS-----SSADKLIKIWGAYDGKFE-----KTISGHKLGISDVAWSSDSRLLVS-G--SDD   90 (231)
Q Consensus        26 h~~~i~~~~~~~~~~--~l~~-----~~~dg~i~i~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~-~--~~~   90 (231)
                      |...|+.+.+||.++  .+|+     .+.-..+++|.......-     +.+.  ...-..+.|.+-|.-|+. +  .-|
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVD  241 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVD  241 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeec
Confidence            567899999999755  4443     345568999987522211     1221  122234678887664322 2  112


Q ss_pred             ---------CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEe--ecCCcEEEEECCCCceeeeccCCCCCeEEE
Q psy4391          91 ---------KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG--SFDESVRIWDVRTGKCLKTLPAHSDPVSAV  159 (231)
Q Consensus        91 ---------g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~  159 (231)
                               ..+++++++.......+. ..++|.++.|+|+++.++..  -.-..+.+||++ +..+..+  .+++-.++
T Consensus       242 ktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~  317 (566)
T KOG2315|consen  242 KTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTA  317 (566)
T ss_pred             CCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccce
Confidence                     368888887544444443 36789999999999877654  446679999987 4444544  35677889


Q ss_pred             EEcCCCCeEEEEecC---CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC------CCeEEEEeCC
Q psy4391         160 HFNRDGSLIVSSSYD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL------DNTLKLWDSY  226 (231)
Q Consensus       160 ~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~------d~~v~vwd~~  226 (231)
                      -|+|.|++++.++.+   |.|-+||..+.+.+..+....   -+...|+|||+++++++.      |+.++||+..
T Consensus       318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~---tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN---TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             EECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC---ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            999999999988765   799999999977776654333   355789999999988874      7899999863

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.4e-10  Score=93.18  Aligned_cols=171  Identities=16%  Similarity=0.150  Sum_probs=109.4

Q ss_pred             cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC-C--CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEE
Q psy4391          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-D--KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (231)
Q Consensus        50 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~--g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (231)
                      .+.++|..... .+.+......+....|+|||+.|+..+. +  ..|++||+.+++.... ...........|+|+|+.|
T Consensus       199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence            45556654333 3445555667888999999999887643 2  3688899987764332 2222223457899999987


Q ss_pred             EE-eecCCc--EEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec-CC--eEEEEeCCCCceeeeeecCCCCCeE
Q psy4391         127 VS-GSFDES--VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVS  200 (231)
Q Consensus       127 ~~-~~~d~~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~i~  200 (231)
                      +. .+.++.  |+++|+.+++. ..+..+........|+||++.++..+. ++  .|.++|+.+++... +... .....
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~-g~~~~  353 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE-GEQNL  353 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-CCCCc
Confidence            65 455564  78889887764 444444445667899999998876553 33  57777887776433 2211 11223


Q ss_pred             EEEECCCCCEEEEEeC-CCe--EEEEeC
Q psy4391         201 FVKFSPNGKYILAATL-DNT--LKLWDS  225 (231)
Q Consensus       201 ~~~~s~~g~~l~~~s~-d~~--v~vwd~  225 (231)
                      ..+|+|||++|+..+. ++.  |.++|.
T Consensus       354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl  381 (448)
T PRK04792        354 GGSITPDGRSMIMVNRTNGKFNIARQDL  381 (448)
T ss_pred             CeeECCCCCEEEEEEecCCceEEEEEEC
Confidence            4689999999988765 343  444554

>KOG4497|consensus

Probab=99.41  E-value=1.8e-10  Score=84.91  Aligned_cols=199  Identities=18%  Similarity=0.293  Sum_probs=130.9

Q ss_pred             ecccccceEEEEECCCCCEE-EEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCC----------
Q psy4391          23 LAGHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK----------   91 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g----------   91 (231)
                      ++.-...+.++.|||||+.| .+..-+-.|.+|...+.+. ..+...+..+..++|+|||++.+.+++..          
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee-EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            33445789999999999755 4566788999999865433 33444455678889999998876654321          


Q ss_pred             --------------------------cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce
Q psy4391          92 --------------------------TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC  145 (231)
Q Consensus        92 --------------------------~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  145 (231)
                                                .+.+||.--.-.+... .-.-.+..++|+|-+++++.|+.|+.+++.+--+.+.
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~  244 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP  244 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence                                      1223332111011111 1123466789999999999999999988754211000


Q ss_pred             e------------------------------------------------------------eecc------CCCCCeEEE
Q psy4391         146 L------------------------------------------------------------KTLP------AHSDPVSAV  159 (231)
Q Consensus       146 ~------------------------------------------------------------~~~~------~~~~~v~~~  159 (231)
                      .                                                            ..++      ...-.+.-+
T Consensus       245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l  324 (447)
T KOG4497|consen  245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL  324 (447)
T ss_pred             hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence            0                                                            0000      001134568


Q ss_pred             EEcCCCCeEEEEecC--CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         160 HFNRDGSLIVSSSYD--GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       160 ~~~~~~~~l~~~~~d--g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +|++|..++++-...  +.+.+||+...+....+..  ..+|....|+|....|+.++...++.+|.+
T Consensus       325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ--k~piraf~WdP~~prL~vctg~srLY~W~p  390 (447)
T KOG4497|consen  325 AFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ--KHPIRAFEWDPGRPRLVVCTGKSRLYFWAP  390 (447)
T ss_pred             eecCCceEEeeecCCCCceEEEEechhhhhhhhhhh--ccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence            999999988876543  6899999998775554433  457888999999999999998889999975

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.41  E-value=2e-09  Score=82.61  Aligned_cols=191  Identities=12%  Similarity=0.151  Sum_probs=130.2

Q ss_pred             EECCCCCEEEEEeC----------CCcEEEeecCCCcEEEEEecccc-------cEEEEEECCCCCEEEEec-C-CCcEE
Q psy4391          34 KFSPNGEWLASSSA----------DKLIKIWGAYDGKFEKTISGHKL-------GISDVAWSSDSRLLVSGS-D-DKTLK   94 (231)
Q Consensus        34 ~~~~~~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~-~g~i~   94 (231)
                      .++|||+.|+.+..          ++.|.+||..+.+...++.....       ....++++|||+++++.. . +..|.
T Consensus        52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence            39999998876554          78999999999998887763221       233678999999988766 3 67899


Q ss_pred             EEeCCCceeeeeecCCC------------------c-------------ceEEEE--------------ECC-CCCEEEE
Q psy4391          95 IWELSSGKCLKTLKGHS------------------N-------------YVFCCN--------------FNP-QSNLIVS  128 (231)
Q Consensus        95 ~~d~~~~~~~~~~~~~~------------------~-------------~v~~~~--------------~~~-~~~~l~~  128 (231)
                      +.|+.+++.+..+....                  .             ......              +.+ +++.+..
T Consensus       132 VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v  211 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP  211 (352)
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEE
Confidence            99998877655432100                  0             000101              122 6666666


Q ss_pred             eecCCcEEEEECCCCc-----eeeeccC-------CCCCeEEEEEcCCCCeEEEEec----------CCeEEEEeCCCCc
Q psy4391         129 GSFDESVRIWDVRTGK-----CLKTLPA-------HSDPVSAVHFNRDGSLIVSSSY----------DGLCRIWDTASGQ  186 (231)
Q Consensus       129 ~~~d~~i~v~d~~~~~-----~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~v~d~~~~~  186 (231)
                      ..+ |.|.+.|+....     ....+..       ..+.+..++++|+++.+++...          .+.|.++|..+++
T Consensus       212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k  290 (352)
T TIGR02658       212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK  290 (352)
T ss_pred             ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence            555 899999964332     2222111       2233445999999998887431          2479999999999


Q ss_pred             eeeeeecCCCCCeEEEEECCCCC-EEEEEe-CCCeEEEEeCCC
Q psy4391         187 CLKTLIDDDNPPVSFVKFSPNGK-YILAAT-LDNTLKLWDSYP  227 (231)
Q Consensus       187 ~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s-~d~~v~vwd~~~  227 (231)
                      .+..+....  ....++++|||+ +|++.. .++.|.++|...
T Consensus       291 vi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       291 RLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             EEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence            888876543  567899999999 777666 578899999643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.40  E-value=3.1e-09  Score=82.78  Aligned_cols=198  Identities=13%  Similarity=0.265  Sum_probs=128.8

Q ss_pred             cceEEEEECCCCCEEEEEeC----CCcEEEeecCCC--cE--EEEEecccccEEEEEECCCCCEEEEec-CCCcEEEEeC
Q psy4391          28 KAVSSVKFSPNGEWLASSSA----DKLIKIWGAYDG--KF--EKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWEL   98 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~----dg~i~i~~~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~~~d~   98 (231)
                      .....++++|++++|++...    +|.|..|.+...  ..  .............++.+|++++++++. .+|.+.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34556889999999988766    568888887653  32  222222334456789999999988776 5889999999


Q ss_pred             CC-ceeeee---ec----------CCCcceEEEEECCCCCEEEEeec-CCcEEEEECCCCc--eee--ecc-CCCCCeEE
Q psy4391          99 SS-GKCLKT---LK----------GHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTGK--CLK--TLP-AHSDPVSA  158 (231)
Q Consensus        99 ~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~--~~~--~~~-~~~~~v~~  158 (231)
                      .. +.....   +.          .......++.++|+++++++... ...|.+|++....  ...  .+. ......+.
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            86 332221   21          11244678899999998887643 4579999987654  211  111 23456789


Q ss_pred             EEEcCCCCeEEEEe-cCCeEEEEeCC--CCce--eeeeecC-----CCCCeEEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         159 VHFNRDGSLIVSSS-YDGLCRIWDTA--SGQC--LKTLIDD-----DNPPVSFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       159 ~~~~~~~~~l~~~~-~dg~i~v~d~~--~~~~--~~~~~~~-----~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      +.|+|+++++++.. .++.|.++++.  .+..  +..+...     .......++++|||++|+++.. ++.|.+|+.
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence            99999999886654 56789999887  4322  2222111     1124577999999999988764 678999986

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1240|consensus

Probab=99.40  E-value=1.5e-10  Score=97.94  Aligned_cols=202  Identities=18%  Similarity=0.250  Sum_probs=139.4

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEE-------EEEecc-cccEEEE-EECC-CCC-EEEEecCCCcEEE
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGH-KLGISDV-AWSS-DSR-LLVSGSDDKTLKI   95 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-------~~~~~~-~~~v~~~-~~~~-~~~-~l~~~~~~g~i~~   95 (231)
                      ..++.++...+.++.+|.++.||.|++.++......       +....+ .+.+.++ ++.. .+. .++.+...+.|..
T Consensus      1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred             CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence            467888889999999999999999999987542111       111111 2223332 3433 233 6778888899999


Q ss_pred             EeCCCceeeeeec--CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc-CCCCCeEEEEEcCCC---CeEE
Q psy4391          96 WELSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFNRDG---SLIV  169 (231)
Q Consensus        96 ~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~---~~l~  169 (231)
                      ||+........++  ...+.+++++.+|.++.+++|+..|.+.+||++-+..+..+. .+..+++.+..+|-.   ...+
T Consensus      1178 ~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred             ecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEE
Confidence            9998755443333  345779999999999999999999999999999888776653 233577777766533   3444


Q ss_pred             EEe--cCCeEEEEeCCCCceeeeeecCCCC------------------CeEEEEECCCCCEEEEEeCCCeEEEEeC-CCC
Q psy4391         170 SSS--YDGLCRIWDTASGQCLKTLIDDDNP------------------PVSFVKFSPNGKYILAATLDNTLKLWDS-YPC  228 (231)
Q Consensus       170 ~~~--~dg~i~v~d~~~~~~~~~~~~~~~~------------------~i~~~~~s~~g~~l~~~s~d~~v~vwd~-~~~  228 (231)
                      +++  ..+.+.+|++.++.....+......                  ......+..-+.++++|+.|..|+.||. .|+
T Consensus      1258 s~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1258 SAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             EecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            444  4678999999998766655443111                  1122334444568899999999999994 555

>KOG4547|consensus

Probab=99.39  E-value=1.6e-10  Score=90.68  Aligned_cols=142  Identities=15%  Similarity=0.261  Sum_probs=120.8

Q ss_pred             CCEEEEEeCCCcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEE
Q psy4391          39 GEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC  116 (231)
Q Consensus        39 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~  116 (231)
                      ...++-|...|.|.+|+...++....+.  .|.++|.++.++.+-..|.+++.|+.+.+|+.......+.++.....+..
T Consensus        70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s  149 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS  149 (541)
T ss_pred             ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence            3467778899999999998888777765  57788999999998889999999999999999999999999988888999


Q ss_pred             EEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCC-----CCeEEEEe-cCCeEEEEeC
Q psy4391         117 CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD-----GSLIVSSS-YDGLCRIWDT  182 (231)
Q Consensus       117 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-~dg~i~v~d~  182 (231)
                      ++.+||+..+++++  +.|++||+++++.+..+.+|.++|++++|--+     |.+++++. .+.-+.+|-.
T Consensus       150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  150 LCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             EEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            99999999999877  57999999999999999999999999999765     66665543 3444556643

>KOG1064|consensus

Probab=99.39  E-value=3.7e-12  Score=110.82  Aligned_cols=187  Identities=14%  Similarity=0.257  Sum_probs=143.8

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe-cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      .+-..|.++.=+|...+-++|+.||.+++|....+..+..+. .....|+.+.|+.+|+.+..+..||.+.+|... .++
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence            345678888888988899999999999999876665554443 223779999999999999999999999999987 455


Q ss_pred             eeeecCCCcceEEEEECCCCCEEEEee---cCCcEEEEECCCCce-eeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEE
Q psy4391         104 LKTLKGHSNYVFCCNFNPQSNLIVSGS---FDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (231)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  179 (231)
                      ....+.|.....+..|-.  ..+++++   .++.+.+||...... ......|.+.++++++.|..+.|++|+.+|.+++
T Consensus      2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred             eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence            556667766666665543  5566654   467899999653221 1112688899999999999999999999999999


Q ss_pred             EeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ||++..+....+..          ++ ...+++.|+..|.++||+.
T Consensus      2363 ~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred             eehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEc
Confidence            99987665444322          34 4578999999999999995

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.37  E-value=1.9e-09  Score=94.52  Aligned_cols=196  Identities=15%  Similarity=0.210  Sum_probs=129.5

Q ss_pred             eEEEEECCCCCEEEEEe-CCCcEEEeecCCCcEEEEEecc-----------------cccEEEEEECC-CCCEEEEecCC
Q psy4391          30 VSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISGH-----------------KLGISDVAWSS-DSRLLVSGSDD   90 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~~   90 (231)
                      -..+++++++..|+.+. .++.|+++|..++. ...+.+.                 -.....++++| ++..+++...+
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            46788888888666554 45678888876543 2222210                 11245789999 45556677778


Q ss_pred             CcEEEEeCCCceeeeeecC---------------CCcceEEEEECCCCCEE-EEeecCCcEEEEECCCCceeeec-----
Q psy4391          91 KTLKIWELSSGKCLKTLKG---------------HSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCLKTL-----  149 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~-----  149 (231)
                      +.|++||..++.... +.+               .-.....++++|++..| ++-..++.|++||+.++......     
T Consensus       705 ~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~  783 (1057)
T PLN02919        705 HQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT  783 (1057)
T ss_pred             CeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence            899999987764321 110               01234568899998844 55566789999999876431110     


Q ss_pred             --------cCC--------CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecC------------CCCCeEE
Q psy4391         150 --------PAH--------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------------DNPPVSF  201 (231)
Q Consensus       150 --------~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~~i~~  201 (231)
                              ...        -.....++++++|..+++-..++.|++||..++.........            .-.....
T Consensus       784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G  863 (1057)
T PLN02919        784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG  863 (1057)
T ss_pred             cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence                    000        012357899999998888888999999999877644322111            0012357


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         202 VKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       202 ~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ++++++|+.+++-+.+++|++||...
T Consensus       864 Iavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        864 LALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             EEEeCCCCEEEEECCCCEEEEEECCC
Confidence            89999999888888899999999743

>KOG0280|consensus

Probab=99.35  E-value=1.3e-10  Score=84.17  Aligned_cols=194  Identities=21%  Similarity=0.295  Sum_probs=127.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEE--EEecccccEEEEEECCC-CCEEEEecCCCcEEEEeCCC-ceeee
Q psy4391          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSS-GKCLK  105 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~~~d~~~-~~~~~  105 (231)
                      ..++.|++.+..++++..+|.+.+-+........  .++.|....+-..|+.. -+.+.+|++|+.+.-||++- ++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            4578889989999998889999865544444443  67788888888888753 36788999999999999983 33322


Q ss_pred             e-ecCCCcceEEEEECC-CCCEEEEeecCCcEEEEECC-CCceeeeccCCCCCeEEEEEcCCC--CeEEEEecCCeEEEE
Q psy4391         106 T-LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVR-TGKCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCRIW  180 (231)
Q Consensus       106 ~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~v~  180 (231)
                      . .+.|...|.++.-+| .+.+|++|+.|..|++||.| .++++..-.. .+.|..+..+|.-  +.|+++-..| .++.
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~  281 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPEIFHRLLAACMHNG-AKIL  281 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecchhhhHHHHHHHhcC-ceEE
Confidence            2 445777788887765 57899999999999999998 5666655443 4789999999843  3444444444 4555


Q ss_pred             eCCCCcee-e-ee--ecCCCCCeEEEEECCCCCEEEEEe-CCCeEE-EEeC
Q psy4391         181 DTASGQCL-K-TL--IDDDNPPVSFVKFSPNGKYILAAT-LDNTLK-LWDS  225 (231)
Q Consensus       181 d~~~~~~~-~-~~--~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~-vwd~  225 (231)
                      +...+... + .+  ...+.+-...-.|.....+||+++ .|+.++ +|-.
T Consensus       282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~  332 (339)
T KOG0280|consen  282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLH  332 (339)
T ss_pred             Eecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeee
Confidence            55443322 1 11  111222122223443345678766 377644 7753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.34  E-value=1.6e-09  Score=83.60  Aligned_cols=121  Identities=20%  Similarity=0.250  Sum_probs=100.6

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCC-cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADK-LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      +|.+.|.-..+..+++-++.|..|| .+-|++..++.. +.+...-+.|.++..+++|++++.+.....+.++|++++..
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            5677788888888888889999999 899999976654 44555567899999999999999999999999999999987


Q ss_pred             eeeecCCCcceEEEEECCCCCEEEEeecCC----cEEEEECCCCcee
Q psy4391         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE----SVRIWDVRTGKCL  146 (231)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~~  146 (231)
                      ...-+...+-++...|+|+++++|-+--+|    .|+++|+..++..
T Consensus       436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence            665566667899999999999999887665    5889999876643

>KOG1334|consensus

Probab=99.34  E-value=1.6e-11  Score=94.33  Aligned_cols=206  Identities=23%  Similarity=0.332  Sum_probs=153.0

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEE-ecccccEEEEEECC--CCCEEEEecCCCcEEE
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSS--DSRLLVSGSDDKTLKI   95 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~~g~i~~   95 (231)
                      +...|.+|.+.|..+.|...|..|++++.|-.|.+||.........+ .+|...|....|-|  +.+.|++++.||.+++
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            44567799999999999999999999999999999998877766655 46767777777877  4567999999999998


Q ss_pred             EeCCC-ce--eeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeeec---cCCCC---CeEEEEEcCCC
Q psy4391          96 WELSS-GK--CLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL---PAHSD---PVSAVHFNRDG  165 (231)
Q Consensus        96 ~d~~~-~~--~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~---~v~~~~~~~~~  165 (231)
                      =.+.. +.  ....+..|.+.+..++.-|+. ..+.+++.|+.+.-+|++.+.....+   ..+..   ....++.+|..
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n  293 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN  293 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence            66543 22  123445677888888888865 56888999999999999877543332   22222   45678888866


Q ss_pred             C-eEEEEecCCeEEEEeCCCCce------eee-----eecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         166 S-LIVSSSYDGLCRIWDTASGQC------LKT-----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       166 ~-~l~~~~~dg~i~v~d~~~~~~------~~~-----~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      . .+++++.|-.+++||.+.-..      +..     +.......|+.++++.++.-|++.-.|-.|.++.
T Consensus       294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence            5 789999999999999765321      112     2223345688999998877676666787888874

>KOG4190|consensus

Probab=99.34  E-value=3.9e-12  Score=99.59  Aligned_cols=200  Identities=21%  Similarity=0.414  Sum_probs=141.5

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCC-------CcEEEEEecccccEEEEEECCCCCEEEEecCCCcE
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-------GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTL   93 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i   93 (231)
                      ..+.||+..|..++--.+.+-+++++.|.+|++|.+..       ...+.....|+.++.++.|..+-+.++++  ||.|
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi  806 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI  806 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence            34568999999988877777888999999999998752       12445566788999999999888877665  7899


Q ss_pred             EEEeCCCceeeeeec-----CCCcceEEEEECCCCCEEEEe-ecCCcEEEEECCCCceeeeccCC-----CCCeEEEEEc
Q psy4391          94 KIWELSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKTLPAH-----SDPVSAVHFN  162 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~  162 (231)
                      .+||.--++.+..+.     +....+.++. +-+..+++.| +...+++++|.+.......++..     ...+++++..
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            999987666544332     1112233322 2233444444 78899999999988766555432     3457899999


Q ss_pred             CCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEE-EeC
Q psy4391         163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL-WDS  225 (231)
Q Consensus       163 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~v-wd~  225 (231)
                      +.|++++++-.+|.|.+.|.++|+.+..+..-.- ....++ .|..+.|+....|..+.| |-.
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWha  947 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHA  947 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehh
Confidence            9999999999999999999999997766543221 111222 455667777777777777 654

>KOG2041|consensus

Probab=99.32  E-value=5.8e-11  Score=95.63  Aligned_cols=210  Identities=17%  Similarity=0.312  Sum_probs=146.4

Q ss_pred             CCccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCC
Q psy4391          13 PKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD   90 (231)
Q Consensus        13 ~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~   90 (231)
                      ...+..+..++.||.++|.-+.|+.+.+.|.+...+|.|.+|....+.....+.  ..+.-|.+++|..+|..|+..-.|
T Consensus        57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD  136 (1189)
T KOG2041|consen   57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYED  136 (1189)
T ss_pred             cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEcc
Confidence            345566777899999999999999999999999999999999987776544332  345668899999999999999999


Q ss_pred             CcEEEEeCCCceee-eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc-------eeee----ccCCCCCeEE
Q psy4391          91 KTLKIWELSSGKCL-KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-------CLKT----LPAHSDPVSA  158 (231)
Q Consensus        91 g~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-------~~~~----~~~~~~~v~~  158 (231)
                      |.|.+=.++..+.- +.+++  .....+.|++|.+.++.+-.+|.++++|.+..-       +...    +......+..
T Consensus       137 GavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~  214 (1189)
T KOG2041|consen  137 GAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE  214 (1189)
T ss_pred             CCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence            99988777643311 22222  223467899999998888889999999976321       1000    1111122444


Q ss_pred             EEEc--------CCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC---------CeEE
Q psy4391         159 VHFN--------RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---------NTLK  221 (231)
Q Consensus       159 ~~~~--------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d---------~~v~  221 (231)
                      +.|.        |+...++++...|.+.+-.-.+-.... +... +-.+....|+++|..||+++.+         +.|+
T Consensus       215 i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv-v~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~  292 (1189)
T KOG2041|consen  215 IEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV-VVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH  292 (1189)
T ss_pred             eeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe-EEec-ccEeecceecCCCcEEEEccCcccccCccccceEE
Confidence            4443        577889999988988776433222111 1111 2345667899999999998854         4777


Q ss_pred             EEeCC
Q psy4391         222 LWDSY  226 (231)
Q Consensus       222 vwd~~  226 (231)
                      +|.++
T Consensus       293 Fysp~  297 (1189)
T KOG2041|consen  293 FYSPY  297 (1189)
T ss_pred             Eeccc
Confidence            77653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.30  E-value=3.3e-09  Score=81.97  Aligned_cols=172  Identities=17%  Similarity=0.243  Sum_probs=128.4

Q ss_pred             CCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCC-cEEEEeCCCceeeeeecCCCcceEE
Q psy4391          38 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK-TLKIWELSSGKCLKTLKGHSNYVFC  116 (231)
Q Consensus        38 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g-~i~~~d~~~~~~~~~~~~~~~~v~~  116 (231)
                      +|++++..+ .|...+.+...+...+  -++..+|.-..+.-+.+-++.|..|| .+-+||..+++..+.. ..-+.+.+
T Consensus       331 ~Gd~ia~VS-RGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e-~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVS-RGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE-KDLGNIEA  406 (668)
T ss_pred             CCcEEEEEe-cCcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-CCccceEE
Confidence            577777655 4666666655443322  23455677777777777888899998 8999999988765544 44577899


Q ss_pred             EEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC----eEEEEeCCCCceeeeee
Q psy4391         117 CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG----LCRIWDTASGQCLKTLI  192 (231)
Q Consensus       117 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~~~~~  192 (231)
                      +..+++|+.++.+.....+.+.|+.+++....-....+-|+...|+|+++++|-+--+|    .|+++|+.+++......
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT  486 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT  486 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence            99999999999999999999999999986555555667899999999999999876665    79999999887544322


Q ss_pred             cCCCCCeEEEEECCCCCEEEEEe
Q psy4391         193 DDDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       193 ~~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                       +.. .=.+-+|+|||++|..-+
T Consensus       487 -~ta-~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         487 -PTA-YDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             -Ccc-cccCcccCCCCcEEEEEe
Confidence             211 113468999999987765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.29  E-value=1.7e-08  Score=75.47  Aligned_cols=196  Identities=13%  Similarity=0.262  Sum_probs=129.7

Q ss_pred             EEEEECCCCCEEEEEeCC-CcEEEeecCC-CcEEEE--Eeccccc----------EEEEEECCCCCEEEEecC-CCcEEE
Q psy4391          31 SSVKFSPNGEWLASSSAD-KLIKIWGAYD-GKFEKT--ISGHKLG----------ISDVAWSSDSRLLVSGSD-DKTLKI   95 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~d-g~i~i~~~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~l~~~~~-~g~i~~   95 (231)
                      +-++++++|++++++... |.|.++-+.+ +.....  +..|.+.          +....+.|+++++++.+. ...|.+
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~  171 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL  171 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence            678889999998887664 6888887754 332211  1122222          778899999999887764 347899


Q ss_pred             EeCCCceeee----eecCCCcceEEEEECCCCCEEEEeec-CCcEEEEECCCC-ceeeecc---------CCCCCeEEEE
Q psy4391          96 WELSSGKCLK----TLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTG-KCLKTLP---------AHSDPVSAVH  160 (231)
Q Consensus        96 ~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~-~~~~~~~---------~~~~~v~~~~  160 (231)
                      |+++.+....    .++ .......+.|+|++++..+.++ +++|.+|..... ..+..++         .......++.
T Consensus       172 y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh  250 (346)
T COG2706         172 YDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH  250 (346)
T ss_pred             EEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence            9998665322    222 2344678999999999888765 888999988763 2222221         1234677899


Q ss_pred             EcCCCCeEEEEecC-CeEEEEeCC--CCceee-eeecCCCCCeEEEEECCCCCEEEEEeCCC-eEEEEeCCC
Q psy4391         161 FNRDGSLIVSSSYD-GLCRIWDTA--SGQCLK-TLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDSYP  227 (231)
Q Consensus       161 ~~~~~~~l~~~~~d-g~i~v~d~~--~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~~~s~d~-~v~vwd~~~  227 (231)
                      +++||++|+++... ..|.+|.+.  +++... .....+...-....++++|++|+++..++ .|.+|...|
T Consensus       251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            99999999887643 467777554  333211 11222222235577999999999988754 788887543

>KOG1354|consensus

Probab=99.28  E-value=2.5e-10  Score=84.52  Aligned_cols=197  Identities=23%  Similarity=0.401  Sum_probs=130.1

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc-----EEEEEecc------------cccEEEEEECCCCC--EEEEe
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGH------------KLGISDVAWSSDSR--LLVSG   87 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~~--~l~~~   87 (231)
                      ..-|.++.|..+|++||+|..+|.|.++......     ....+..|            ...+..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            3568999999999999999999999998754322     12222222            23467889988654  46677


Q ss_pred             cCCCcEEEEeCCCceeee--------------------ee----------------cCCCcceEEEEECCCCCEEEEeec
Q psy4391          88 SDDKTLKIWELSSGKCLK--------------------TL----------------KGHSNYVFCCNFNPQSNLIVSGSF  131 (231)
Q Consensus        88 ~~~g~i~~~d~~~~~~~~--------------------~~----------------~~~~~~v~~~~~~~~~~~l~~~~~  131 (231)
                      +.|.+|++|-+.......                    .+                .+|.--+.++.++.|+..++++ .
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence            789999999874321100                    00                1244446678888888877754 4


Q ss_pred             CCcEEEEECCCCcee---eeccCC-----CCCeEEEEEcCC-CCeEEEEecCCeEEEEeCCCCce------eee------
Q psy4391         132 DESVRIWDVRTGKCL---KTLPAH-----SDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQC------LKT------  190 (231)
Q Consensus       132 d~~i~v~d~~~~~~~---~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~------~~~------  190 (231)
                      |=+|.+|+++.....   ..+..+     ..-|++..|+|. ...++-.+..|.|++.|++....      +..      
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            567999998743321   112222     235778889985 45677778899999999984211      111      


Q ss_pred             ---eecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         191 ---LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       191 ---~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                         +..+..+.|+.+.|+++|+|+++=.. -+|++||.
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~  300 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDL  300 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEec
Confidence               11112235778999999999986543 59999996

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.28  E-value=3e-08  Score=74.14  Aligned_cols=198  Identities=13%  Similarity=0.254  Sum_probs=129.8

Q ss_pred             cccceEEEEECCCCCEEEEEeCC---CcEEEeecCC--CcEEE--EEecccccEEEEEECCCCCEEEEecC-CCcEEEEe
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYD--GKFEK--TISGHKLGISDVAWSSDSRLLVSGSD-DKTLKIWE   97 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~d---g~i~i~~~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~~~d   97 (231)
                      +.+..+-++|+|+++.|+++..+   |.|.-|.+..  ++...  .......+..-+++++++++++++.- .|.|.++-
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence            45667889999999999887554   6676666643  44322  22222334477899999999887754 57899998


Q ss_pred             CCC-ceee---eeecCCCcc----------eEEEEECCCCCEEEEeec-CCcEEEEECCCCceeeecc---CCCCCeEEE
Q psy4391          98 LSS-GKCL---KTLKGHSNY----------VFCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKTLP---AHSDPVSAV  159 (231)
Q Consensus        98 ~~~-~~~~---~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~---~~~~~v~~~  159 (231)
                      +.. +...   ..+. |.+.          +....+.|+++++++..- ..+|.+|++..|.....-.   ......+.|
T Consensus       118 ~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi  196 (346)
T COG2706         118 LQADGSLQPVVQVVK-HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI  196 (346)
T ss_pred             cccCCccccceeeee-cCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence            865 3321   2221 2222          566789999999888753 3468999998765422211   223456899


Q ss_pred             EEcCCCCeEEEEe-cCCeEEEEeCCCC-ceeeeeec--------CCCCCeEEEEECCCCCEEEEEeC-CCeEEEEe
Q psy4391         160 HFNRDGSLIVSSS-YDGLCRIWDTASG-QCLKTLID--------DDNPPVSFVKFSPNGKYILAATL-DNTLKLWD  224 (231)
Q Consensus       160 ~~~~~~~~l~~~~-~dg~i~v~d~~~~-~~~~~~~~--------~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd  224 (231)
                      .|+|++++.++.+ -+++|.+|..... ..+..++.        ........|.+++||++|+++-. ...|-+|.
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~  272 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS  272 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence            9999999887655 5789999987763 22222211        12334577899999999988764 23555554

>KOG1275|consensus

Probab=99.27  E-value=4.4e-10  Score=92.65  Aligned_cols=180  Identities=18%  Similarity=0.270  Sum_probs=129.5

Q ss_pred             EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEEC
Q psy4391          41 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFN  120 (231)
Q Consensus        41 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  120 (231)
                      .++.|+-...+..+|..+.+..+...-...++.-+  ..+++.+.+|...|+|.+-|..+.+.++.+..|.+.+.+  |+
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fD  224 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FD  224 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceee--ee
Confidence            44444444555556665554443333223344444  346788999999999999999999999999999998865  56


Q ss_pred             CCCCEEEEeec---------CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCC-CeEEEEecCCeEEEEe---CCCCce
Q psy4391         121 PQSNLIVSGSF---------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWD---TASGQC  187 (231)
Q Consensus       121 ~~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~v~d---~~~~~~  187 (231)
                      -.|++|++++.         |..|+|||+|+-+.+..+..+.++ .-+.|+|.- ..+++++..|...+.|   +.+...
T Consensus       225 v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~  303 (1118)
T KOG1275|consen  225 VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA  303 (1118)
T ss_pred             ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence            67899998876         345799999987776666665554 345677753 4678888899999988   333322


Q ss_pred             eeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       188 ~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      -........+.+..+.++++|+.++.|..+|.|.+|-.
T Consensus       304 ~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  304 GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            22333455566889999999999999999999999984

>KOG1409|consensus

Probab=99.27  E-value=3.9e-10  Score=83.45  Aligned_cols=206  Identities=19%  Similarity=0.319  Sum_probs=144.7

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCC-CcEEEEEe-cccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ..+.||.+.++....-|..+-+++.+.|.++++|--.+ ++.-..+. .-..+++.+.+.++.+.|+++-.+|++.-+.+
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~   97 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL   97 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence            34568999999988889888899999999999997543 22222222 22456888999999999999999999887765


Q ss_pred             CC----ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEE--------------------------------------
Q psy4391          99 SS----GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR--------------------------------------  136 (231)
Q Consensus        99 ~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~--------------------------------------  136 (231)
                      ..    ....+....|...+..+.|+.....+++.+.|..+.                                      
T Consensus        98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqv  177 (404)
T KOG1409|consen   98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQI  177 (404)
T ss_pred             hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccce
Confidence            32    223333344555555555555444444444443321                                      


Q ss_pred             -EEE--CCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEE
Q psy4391         137 -IWD--VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA  213 (231)
Q Consensus       137 -v~d--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  213 (231)
                       ...  .+.-..+..+.+|.+++.+++|.|....+++|..|..+.+||+..++........+...+..+..-+.-+.+.+
T Consensus       178 t~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S  257 (404)
T KOG1409|consen  178 TMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLIS  257 (404)
T ss_pred             EEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeee
Confidence             111  11122345667888999999999999999999999999999998776555555555556666666666688999


Q ss_pred             EeCCCeEEEEeCC
Q psy4391         214 ATLDNTLKLWDSY  226 (231)
Q Consensus       214 ~s~d~~v~vwd~~  226 (231)
                      ++.||.|.+||.+
T Consensus       258 ~~edg~i~~w~mn  270 (404)
T KOG1409|consen  258 CGEDGGIVVWNMN  270 (404)
T ss_pred             ccCCCeEEEEecc
Confidence            9999999999963

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.25  E-value=1.5e-08  Score=75.47  Aligned_cols=181  Identities=20%  Similarity=0.331  Sum_probs=122.3

Q ss_pred             EEECCCCCEEEEEeC-----CCcEEEeecC-CCcEEEEEecccccEEEEEECCCCCEEEEecC-----------------
Q psy4391          33 VKFSPNGEWLASSSA-----DKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-----------------   89 (231)
Q Consensus        33 ~~~~~~~~~l~~~~~-----dg~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------   89 (231)
                      -.||+||++|++...     .|.|-|||.. ......++..+..+..++.+.|||+.|+++..                 
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            379999999987543     4789999998 56677788888888889999999988776532                 


Q ss_pred             -CCcEEEEeCCCceeeeeec----CCCcceEEEEECCCCCEEEEeecCCc-------EEEEECCCCceeeec-------c
Q psy4391          90 -DKTLKIWELSSGKCLKTLK----GHSNYVFCCNFNPQSNLIVSGSFDES-------VRIWDVRTGKCLKTL-------P  150 (231)
Q Consensus        90 -~g~i~~~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~-------i~v~d~~~~~~~~~~-------~  150 (231)
                       +..+.+.|..+++.+.+..    .+...+..++++++|..++..-..|.       +-+++.  ++.+..+       .
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~  213 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWR  213 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHH
Confidence             1235556667776655532    25567888999999887776554443       233332  2222222       2


Q ss_pred             CCCCCeEEEEEcCCCCeEEEEe-cCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeE
Q psy4391         151 AHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL  220 (231)
Q Consensus       151 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v  220 (231)
                      ...+.+-++++++++..+++.+ ..+.+.+||..+++.+......+   +..++..+++ ++++.+ .|.+
T Consensus       214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D---~cGva~~~~~-f~~ssG-~G~~  279 (305)
T PF07433_consen  214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD---ACGVAPTDDG-FLVSSG-QGQL  279 (305)
T ss_pred             hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc---eeeeeecCCc-eEEeCC-CccE
Confidence            2346889999999998876554 56799999999998776654333   3455666666 555444 3443

>KOG1334|consensus

Probab=99.25  E-value=8.7e-11  Score=90.39  Aligned_cols=203  Identities=17%  Similarity=0.304  Sum_probs=149.2

Q ss_pred             eecccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcEEEEEe---ccc---ccEEEEEECCCCC-EEEEecCCCcE
Q psy4391          22 TLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTIS---GHK---LGISDVAWSSDSR-LLVSGSDDKTL   93 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~-~l~~~~~~g~i   93 (231)
                      .+..|.+.|.-++.-|+.. .+.+++.|+.+.-+|+........+.   .+.   .....++..|... .+++++.|-.+
T Consensus       227 rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~  306 (559)
T KOG1334|consen  227 RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFA  306 (559)
T ss_pred             ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhh
Confidence            3557999999999999765 67889999999988887654433332   111   2567788888554 78999999999


Q ss_pred             EEEeCCCcee------eeee------cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc------------eeee-
Q psy4391          94 KIWELSSGKC------LKTL------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK------------CLKT-  148 (231)
Q Consensus        94 ~~~d~~~~~~------~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~------------~~~~-  148 (231)
                      ++||...-..      +..+      ....-.|+++.++.++.-+.+.-.|-.|+++.-..+.            .++. 
T Consensus       307 RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~v  386 (559)
T KOG1334|consen  307 RVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRV  386 (559)
T ss_pred             hhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchh
Confidence            9999864211      1111      1223458899999888888888889999999543321            1222 


Q ss_pred             ccCCCC--CeEEEE-EcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         149 LPAHSD--PVSAVH-FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       149 ~~~~~~--~v~~~~-~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .++|..  .|..+- |-|...++++|+.-|.|.+|+-.+++.++.+.... ..|+++.-+|.-..||+++.|.-|+||-+
T Consensus       387 YKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr-~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  387 YKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDR-HVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             hcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhccc-ceEeccCCCCCCchhhccCCccceeeecC
Confidence            445533  355554 45888999999999999999999988776655444 48899999999999999999999999986

>KOG0280|consensus

Probab=99.25  E-value=3.5e-09  Score=76.93  Aligned_cols=178  Identities=19%  Similarity=0.243  Sum_probs=121.0

Q ss_pred             cceEEEEECC---CCC-EEEEEeCCCcEEEeecCCCcEEEEEec---ccc---cEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          28 KAVSSVKFSP---NGE-WLASSSADKLIKIWGAYDGKFEKTISG---HKL---GISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        28 ~~i~~~~~~~---~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~---~~~---~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      ..+..+.|..   +|. .++-+..+|.|.++..........+.+   ...   ...++.|++.+..+++...+|.+.+-+
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~  149 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY  149 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence            4455566643   455 456677789999987654333222221   111   134678889898999999999988555


Q ss_pred             CCCce--eeeeecCCCcceEEEEECC-CCCEEEEeecCCcEEEEECCCC-ceeee-ccCCCCCeEEEEEcC-CCCeEEEE
Q psy4391          98 LSSGK--CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTG-KCLKT-LPAHSDPVSAVHFNR-DGSLIVSS  171 (231)
Q Consensus        98 ~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~-~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~  171 (231)
                      .....  .++.++.|.-....+.|+. +.+++++|+.|+.+..||+|.. +.+.. ...|...|.++.-+| .+.++++|
T Consensus       150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG  229 (339)
T KOG0280|consen  150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG  229 (339)
T ss_pred             cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe
Confidence            44433  3346788887777777765 3478999999999999999933 33333 456777888877765 67799999


Q ss_pred             ecCCeEEEEeCCC-CceeeeeecCCCCCeEEEEECCC
Q psy4391         172 SYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN  207 (231)
Q Consensus       172 ~~dg~i~v~d~~~-~~~~~~~~~~~~~~i~~~~~s~~  207 (231)
                      ++|-.|++||.++ ++.+..-  .....|..+.++|.
T Consensus       230 sYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  230 SYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPE  264 (339)
T ss_pred             ccccceeeeehhcccCccccC--ccccceEEEEecch
Confidence            9999999999984 4444322  22345666777764

>KOG3914|consensus

Probab=99.23  E-value=3.3e-10  Score=85.24  Aligned_cols=160  Identities=21%  Similarity=0.355  Sum_probs=110.5

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcE-EE--EEecccccEEEEEECCCCCEEEEecCCC---cEEEEeCCCce
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EK--TISGHKLGISDVAWSSDSRLLVSGSDDK---TLKIWELSSGK  102 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~d~~~~~  102 (231)
                      ....+..++.++++|.+..+....+++...... .+  ....-.....++.+..+......+...|   .+.+|....+.
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            344566778889999888888877777654322 11  1111122334455555555555544444   44555544433


Q ss_pred             eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc-CCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      . ..+-+|-+.+.+++++||+++|+++..|+.|++-....--.+..+. +|...|..++.-+ +..|++++.|+++++||
T Consensus       144 ~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  144 C-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWD  221 (390)
T ss_pred             c-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEe
Confidence            3 3344788889999999999999999999999998776555555554 5888999998876 45589999999999999


Q ss_pred             CCCCceeee
Q psy4391         182 TASGQCLKT  190 (231)
Q Consensus       182 ~~~~~~~~~  190 (231)
                      +.+++.+..
T Consensus       222 ~~sgk~L~t  230 (390)
T KOG3914|consen  222 ITSGKLLDT  230 (390)
T ss_pred             cccCCcccc
Confidence            999987654

>KOG1409|consensus

Probab=99.22  E-value=2.7e-09  Score=79.11  Aligned_cols=158  Identities=22%  Similarity=0.422  Sum_probs=113.3

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCC----cEEEEEecccccEEEEEECCCCCEEEEecCCCcEE--------
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLK--------   94 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~--------   94 (231)
                      ...++++.+.++...|+.|-.+|++.-+.....    ...+....|...+..+.|+...+.+++++.|..+.        
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~  147 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN  147 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence            467889999999999999999999988875422    22333345556666666665555555554443221        


Q ss_pred             -------------------------------EEeCC--CceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECC
Q psy4391          95 -------------------------------IWELS--SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR  141 (231)
Q Consensus        95 -------------------------------~~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  141 (231)
                                                     +..+.  .-..+..+.+|.+.+.++.|.+...++++|..|..+.+||+.
T Consensus       148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig  227 (404)
T KOG1409|consen  148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG  227 (404)
T ss_pred             cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence                                           11111  112344566788899999999999999999999999999997


Q ss_pred             CCce-eeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCC
Q psy4391         142 TGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       142 ~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (231)
                      .++. ......|.+.|..+...+--+.+.+++.||.|.+||...
T Consensus       228 g~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  228 GRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             CCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            5543 344567777888888777778899999999999998743

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=3.8e-08  Score=78.34  Aligned_cols=168  Identities=15%  Similarity=0.110  Sum_probs=105.2

Q ss_pred             cEEEeecCCCcEEEEEecccccEEEEEECCCCCE-EEEecC---CCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCE
Q psy4391          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRL-LVSGSD---DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL  125 (231)
Q Consensus        50 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  125 (231)
                      .|.+-|.. +...+.+.... ......|+|||+. ++..+.   ...|+++|+.+++...... ..+......|+|||+.
T Consensus       170 ~l~~~d~d-g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~  246 (419)
T PRK04043        170 NIVLADYT-LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK  246 (419)
T ss_pred             eEEEECCC-CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence            34443442 33333343333 6678899999985 554333   3579999998887654433 3344556789999987


Q ss_pred             EEEe-ec--CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec-CC--eEEEEeCCCCceeeeeecCCCCCe
Q psy4391         126 IVSG-SF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPV  199 (231)
Q Consensus       126 l~~~-~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~i  199 (231)
                      ++.. +.  +..|.++|+.+++. ..+..+........|+|||+.++..+. .+  .|.+.|+.+++..+.... ...  
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--  322 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--  322 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--
Confidence            7654 32  35688889887763 444433333345689999998876653 23  688889987765333222 111  


Q ss_pred             EEEEECCCCCEEEEEeCC---------CeEEEEeC
Q psy4391         200 SFVKFSPNGKYILAATLD---------NTLKLWDS  225 (231)
Q Consensus       200 ~~~~~s~~g~~l~~~s~d---------~~v~vwd~  225 (231)
                       ...|+|||++++..+..         ..|.+.|.
T Consensus       323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~  356 (419)
T PRK04043        323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLIST  356 (419)
T ss_pred             -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEEC
Confidence             24899999999887754         25666664

>KOG4714|consensus

Probab=99.21  E-value=4.2e-10  Score=80.35  Aligned_cols=199  Identities=18%  Similarity=0.237  Sum_probs=120.0

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc-EEEEEecccccEEEEEECCCCCEEEEecC-----CCcEEEEeC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSRLLVSGSD-----DKTLKIWEL   98 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~g~i~~~d~   98 (231)
                      .|.+.-.+-+.+-.+..++++..||.+.+++.+... ....+.....+-.+.+....++.+.++..     -+..+.|++
T Consensus        87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~  166 (319)
T KOG4714|consen   87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTL  166 (319)
T ss_pred             ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecc
Confidence            344333333444456778999999999999875421 11112111122223334444555544322     124455555


Q ss_pred             CCceeeeeecCCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCce-eeeccCCCCCeEEEEEcC-CCCeEEEEecCC
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG  175 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg  175 (231)
                      +..+....-.-....+.+++-+|. .+++++|+.||.+-+||.+.... ...+.+|+.++..+.|+| ++..|++++.||
T Consensus       167 ~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG  246 (319)
T KOG4714|consen  167 DPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG  246 (319)
T ss_pred             cccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence            433221111111233777888885 45677888999999999998754 334678999999999998 567999999999


Q ss_pred             eEEEEeCCCCceee---------eeec---------------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         176 LCRIWDTASGQCLK---------TLID---------------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       176 ~i~v~d~~~~~~~~---------~~~~---------------~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      .+..||..+. .+.         .+..               .....|+  .|+-.|..|++|+.-+.|.+++..
T Consensus       247 slw~wdas~~-~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~~l  318 (319)
T KOG4714|consen  247 SLWHWDASTT-FLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSIN--SFDVLGPCLVCGTDAEAIYLTRHL  318 (319)
T ss_pred             cEEEEcCCCc-eEEecCccccccccccCCcccceEeeeccccccceeee--eeeccCceEEeccccceEEEeccc
Confidence            9999998742 111         0000               0001122  355568899999988899888753

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.19  E-value=1.2e-07  Score=70.34  Aligned_cols=188  Identities=18%  Similarity=0.173  Sum_probs=120.8

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEEC-CCCCEEEEecCCCcEEEEeCCCceeeeeecC
Q psy4391          32 SVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSRLLVSGSDDKTLKIWELSSGKCLKTLKG  109 (231)
Q Consensus        32 ~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~  109 (231)
                      ++.|.+ ++.++++-...+.|..|+..++.... +....  ...+++. +++. ++.+.. +.+.++|..+++.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~-~~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADS-GGIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEc-CceEEEecCCCcEEEEeec
Confidence            578988 66677776678899999987765433 32222  5667777 6655 444444 4455669888764433322


Q ss_pred             -----CCcceEEEEECCCCCEEEEeecC--------CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEE-EEecCC
Q psy4391         110 -----HSNYVFCCNFNPQSNLIVSGSFD--------ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDG  175 (231)
Q Consensus       110 -----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg  175 (231)
                           .......++++|+|++.++....        |.+..++.. ++. ..+...-.....++|+|+++.|+ +-+..+
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~  156 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKTLYVADSFNG  156 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchheeecccccc
Confidence                 34567789999999988876543        457777776 443 33222344568899999999776 556678


Q ss_pred             eEEEEeCCCCce----eeeeecCCCC--CeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         176 LCRIWDTASGQC----LKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       176 ~i~v~d~~~~~~----~~~~~~~~~~--~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      .|..+++.....    ...+......  ....++++.+|++.++.-..+.|.++|..
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            899998853221    1222222222  25679999999988887778999999863

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.18  E-value=9.8e-09  Score=88.69  Aligned_cols=196  Identities=18%  Similarity=0.310  Sum_probs=127.5

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecC------------C-----------CcEEEEEec----------------
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAY------------D-----------GKFEKTISG----------------   67 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~------------~-----------~~~~~~~~~----------------   67 (231)
                      ...|.+++||||++.|+..+.+|++.+....            +           |+....+.|                
T Consensus       120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            4689999999999999998888888775321            0           111111111                


Q ss_pred             --------ccccEEEEEECCCCCEEEEecC------CCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeec--
Q psy4391          68 --------HKLGISDVAWSSDSRLLVSGSD------DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--  131 (231)
Q Consensus        68 --------~~~~v~~~~~~~~~~~l~~~~~------~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--  131 (231)
                              ....-..++|..||+++|+.+-      .+.+++|+-+ |........-.+--..++|-|.|++||+...  
T Consensus       200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~  278 (928)
T PF04762_consen  200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLP  278 (928)
T ss_pred             ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcC
Confidence                    1113346889999999987653      2578999976 4433322222222346799999999998865  


Q ss_pred             -CCcEEEEECCCCceeeec----cCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce--eeeeecCCCCCeEEEEE
Q psy4391         132 -DESVRIWDVRTGKCLKTL----PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC--LKTLIDDDNPPVSFVKF  204 (231)
Q Consensus       132 -d~~i~v~d~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~~i~~~~~  204 (231)
                       ...|.+|+-+ |..-..+    ......|..++|++|+..||....|. |.+|-..+...  .+.+.......+..+.|
T Consensus       279 ~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~W  356 (928)
T PF04762_consen  279 DRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKW  356 (928)
T ss_pred             CCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEE
Confidence             3346677643 3322222    23456789999999999999877655 99998877642  23333333444455899


Q ss_pred             CCCCC-EEEEEeCCCeEEEEeC
Q psy4391         205 SPNGK-YILAATLDNTLKLWDS  225 (231)
Q Consensus       205 s~~g~-~l~~~s~d~~v~vwd~  225 (231)
                      +|... .|...+.+|.+..++.
T Consensus       357 dpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  357 DPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             CCCCCCEEEEEecCCcEEEEEE
Confidence            99654 5677777788877763

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.18  E-value=8.4e-08  Score=69.78  Aligned_cols=191  Identities=17%  Similarity=0.296  Sum_probs=118.1

Q ss_pred             EEECCCCCEEEEEeCCCcEEEeecCCCc--EEEE--Eec-ccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy4391          33 VKFSPNGEWLASSSADKLIKIWGAYDGK--FEKT--ISG-HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        33 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~  107 (231)
                      ++.+.+|+.||+- .|..|.|....+.-  ....  +.. ....=..++|+||+..||.+...|+|+++|+...+. ..+
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEc
Confidence            5677899988874 57788887654431  1111  211 122245789999999999999999999999986432 222


Q ss_pred             cCC-------CcceEEEEECCC------CCEEEEeecCCcEEEEECCCC--c---eeee--ccC-CCCCeEEEEEcCCCC
Q psy4391         108 KGH-------SNYVFCCNFNPQ------SNLIVSGSFDESVRIWDVRTG--K---CLKT--LPA-HSDPVSAVHFNRDGS  166 (231)
Q Consensus       108 ~~~-------~~~v~~~~~~~~------~~~l~~~~~d~~i~v~d~~~~--~---~~~~--~~~-~~~~v~~~~~~~~~~  166 (231)
                      ...       ...|..+.|-+.      ...|+.-...|.++=|-+..+  +   ....  +.. +...|.++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            211       123444444332      234666677777776554221  1   1112  222 356899999999988


Q ss_pred             eEEEEecC----C-------eEEEEeCCCCcee---------------------e-------eeecCCCCCeEEEEECCC
Q psy4391         167 LIVSSSYD----G-------LCRIWDTASGQCL---------------------K-------TLIDDDNPPVSFVKFSPN  207 (231)
Q Consensus       167 ~l~~~~~d----g-------~i~v~d~~~~~~~---------------------~-------~~~~~~~~~i~~~~~s~~  207 (231)
                      +|++|+..    +       -+..|.+-++..-                     +       .........|..|..|||
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd  240 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD  240 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence            88776531    1       2455654322110                     0       001223455778999999


Q ss_pred             CCEEEEEeCCCeEEEEeC
Q psy4391         208 GKYILAATLDNTLKLWDS  225 (231)
Q Consensus       208 g~~l~~~s~d~~v~vwd~  225 (231)
                      |+.||+...+|.|.+|+.
T Consensus       241 g~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  241 GSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             CCEEEEEEcCCeEEEEec
Confidence            999999999999999985

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.15  E-value=4.2e-07  Score=67.49  Aligned_cols=180  Identities=19%  Similarity=0.274  Sum_probs=117.4

Q ss_pred             eEEEEEC-CCCCEEEEEeCCCcEEEeecCCCcEEEEEec-----ccccEEEEEECCCCCEEEEecCC--------CcEEE
Q psy4391          30 VSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISG-----HKLGISDVAWSSDSRLLVSGSDD--------KTLKI   95 (231)
Q Consensus        30 i~~~~~~-~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~--------g~i~~   95 (231)
                      ...+++. +++.++ .+... .+.++|..+++.......     ......++++.|+|+..++....        |.+..
T Consensus        42 ~~G~~~~~~~g~l~-v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLY-VADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEE-EEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEE-EEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            5667777 565554 44444 445558877755444332     34568899999999977765543        45777


Q ss_pred             EeCCCceeeeeecCCCcceEEEEECCCCCEEE-EeecCCcEEEEECCCCce-------eeeccCCCCCeEEEEEcCCCCe
Q psy4391          96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRIWDVRTGKC-------LKTLPAHSDPVSAVHFNRDGSL  167 (231)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~  167 (231)
                      ++.. ++...... .-.....++|+|+++.|+ +-+..+.|..+++.....       ...+....+....++++.+|++
T Consensus       120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l  197 (246)
T PF08450_consen  120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL  197 (246)
T ss_dssp             EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred             ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence            7776 44333332 234567899999998776 556778899998863321       1122222234778999999998


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEE-CCCCCEEEEEe
Q psy4391         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF-SPNGKYILAAT  215 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~-s~~g~~l~~~s  215 (231)
                      .++....+.|.++|.. ++.+..+... ....+.++| .++.+.|++.+
T Consensus       198 ~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  198 WVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred             EEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence            8887788999999988 7777776655 346788999 57777776655

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.15  E-value=2.3e-07  Score=69.28  Aligned_cols=194  Identities=15%  Similarity=0.226  Sum_probs=131.1

Q ss_pred             EEEEECC-CCCEEEEEeCCCc-EEEeecCCCcEEEEEecccccEE--EEEECCCCCEEEEecC-----CCcEEEEeCC-C
Q psy4391          31 SSVKFSP-NGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGIS--DVAWSSDSRLLVSGSD-----DKTLKIWELS-S  100 (231)
Q Consensus        31 ~~~~~~~-~~~~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~-----~g~i~~~d~~-~  100 (231)
                      ..++.+| .+..++.+-.-|. ..+||..++.....+......-.  .-.|++||++|++.-.     .|.|-|||.. +
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~   87 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG   87 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence            3678888 4556667777774 67899988887776654332211  2479999999988654     4789999998 5


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEeec------------------CCcEEEEECCCCceeeecc----CCCCCeEE
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF------------------DESVRIWDVRTGKCLKTLP----AHSDPVSA  158 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~v~d~~~~~~~~~~~----~~~~~v~~  158 (231)
                      .+.+..+..+.-....+.+.|||..|+.+..                  +..+.+.|..+|+.+.+..    -|.-.++.
T Consensus        88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence            6666777766555567789999977766532                  2235567778888776633    25668999


Q ss_pred             EEEcCCCCeEEEEecCCe-------EEEEeCCCCceeeeeec------CCCCCeEEEEECCCCCEEEEEeC-CCeEEEEe
Q psy4391         159 VHFNRDGSLIVSSSYDGL-------CRIWDTASGQCLKTLID------DDNPPVSFVKFSPNGKYILAATL-DNTLKLWD  224 (231)
Q Consensus       159 ~~~~~~~~~l~~~~~dg~-------i~v~d~~~~~~~~~~~~------~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd  224 (231)
                      +++.++|..++..-..|.       +-+++..  +.+..+..      .-...+-+|+++++|.++++.+. .|.+.+||
T Consensus       168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d  245 (305)
T PF07433_consen  168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD  245 (305)
T ss_pred             EEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence            999999987766554442       3333322  22222111      11235778999999998877775 67999998


Q ss_pred             CC
Q psy4391         225 SY  226 (231)
Q Consensus       225 ~~  226 (231)
                      ..
T Consensus       246 ~~  247 (305)
T PF07433_consen  246 AA  247 (305)
T ss_pred             CC
Confidence            63

>KOG4532|consensus

Probab=99.14  E-value=3.1e-08  Score=71.35  Aligned_cols=175  Identities=16%  Similarity=0.103  Sum_probs=115.8

Q ss_pred             EEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce--eee-eecCCCcceEEEE
Q psy4391          42 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK--CLK-TLKGHSNYVFCCN  118 (231)
Q Consensus        42 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~--~~~-~~~~~~~~v~~~~  118 (231)
                      +..++.|.++++.+++.+.......-....+..++.++|++++++.++...|..|.++...  .+. .+....+.-.+..
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence            3445566666666665433322222222347788999999999999999999999987532  222 1222233345678


Q ss_pred             ECCCCCEEEEeecCCcEEEEECCCCceee-----eccCCCCCeEEEEEcCCCC--eEEEEecCCeEEEEeCCCCceeeee
Q psy4391         119 FNPQSNLIVSGSFDESVRIWDVRTGKCLK-----TLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL  191 (231)
Q Consensus       119 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-----~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~v~d~~~~~~~~~~  191 (231)
                      |+.....+|++..||.+.+||++.-....     .-..|.++++.+.|++.|.  +|+..-.-+.+.+.|+++++..+.+
T Consensus       211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence            99999999999999999999998654322     2245788999999998664  4555555678999999998766554


Q ss_pred             ecCCC-------CCeEEEEECCCCCEEEEEeC
Q psy4391         192 IDDDN-------PPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       192 ~~~~~-------~~i~~~~~s~~g~~l~~~s~  216 (231)
                      ...+.       ..+..-.|+.++.-+.+.++
T Consensus       291 ~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  291 VIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             ecCccccccccccccccccccCCCcccccccc
Confidence            32221       22444556777665555553

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.12  E-value=5.5e-08  Score=84.19  Aligned_cols=195  Identities=15%  Similarity=0.213  Sum_probs=130.1

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEe----ecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC---
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIW----GAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS---   99 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~---   99 (231)
                      .+.|.++.|-++..-++.+..+|.|.+.    +..+. .......-..+|.+++|+||++.++..+.++++.+-+-.   
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~  153 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP  153 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence            4679999999999988888999999888    44332 222333446789999999999999998888887664321   


Q ss_pred             ------------Ccee--------eeeecC------------------------CCcceEEEEECCCCCEEEEeec---C
Q psy4391         100 ------------SGKC--------LKTLKG------------------------HSNYVFCCNFNPQSNLIVSGSF---D  132 (231)
Q Consensus       100 ------------~~~~--------~~~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~---d  132 (231)
                                  ..+.        ..++.+                        ..+.-..++|-.||.++|+.+-   .
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~  233 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET  233 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence                        0000        011100                        1123456789999999998764   2


Q ss_pred             ---CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec---CCeEEEEeCCCCceeeeeec---CCCCCeEEEE
Q psy4391         133 ---ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY---DGLCRIWDTASGQCLKTLID---DDNPPVSFVK  203 (231)
Q Consensus       133 ---~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~---~~~~~i~~~~  203 (231)
                         +.++||+-+ |......+.-.+--.+++|-|.|.++|+...   ...|.+|.- +|-....+..   .....+..+.
T Consensus       234 ~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~  311 (928)
T PF04762_consen  234 GSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELA  311 (928)
T ss_pred             CceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEE
Confidence               468999965 5543333333333457899999999988764   234555542 3322233322   3455688999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEeC
Q psy4391         204 FSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       204 ~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      |++|+..||....| .|.+|-.
T Consensus       312 Wn~ds~iLAv~~~~-~vqLWt~  332 (928)
T PF04762_consen  312 WNSDSEILAVWLED-RVQLWTR  332 (928)
T ss_pred             ECCCCCEEEEEecC-CceEEEe
Confidence            99999999997755 4999964

>KOG1354|consensus

Probab=99.10  E-value=5.6e-09  Score=77.51  Aligned_cols=160  Identities=19%  Similarity=0.358  Sum_probs=110.6

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEE---EEecc-----cccEEEEEECCCC-CEEEEecCCCcEE
Q psy4391          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGH-----KLGISDVAWSSDS-RLLVSGSDDKTLK   94 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~---~~~~~-----~~~v~~~~~~~~~-~~l~~~~~~g~i~   94 (231)
                      .+|+-.|.++.++.|++.++++ .|=.|.+|+.+-.....   .++.+     ..-|++..|+|.. +.++..+..|+|+
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            3688899999999999998875 46789999875322211   12221     2236778899954 5667788899999


Q ss_pred             EEeCCCcee----eeee------------cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCC-CceeeeccCCC----
Q psy4391          95 IWELSSGKC----LKTL------------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-GKCLKTLPAHS----  153 (231)
Q Consensus        95 ~~d~~~~~~----~~~~------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~----  153 (231)
                      +.|++....    .+.+            .+-.+.|..+.|++.|+++++-.. -+|++||++. .+++.....|.    
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~  318 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRS  318 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHH
Confidence            999974210    0111            111244678899999999986443 5799999954 34444444442    


Q ss_pred             --------CCe---EEEEEcCCCCeEEEEecCCeEEEEeCCCC
Q psy4391         154 --------DPV---SAVHFNRDGSLIVSSSYDGLCRIWDTASG  185 (231)
Q Consensus       154 --------~~v---~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  185 (231)
                              +.|   ..++|+.++.++++|+....++++++..|
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence                    122   35789999999999999999999996544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.08  E-value=6.2e-08  Score=85.19  Aligned_cols=156  Identities=18%  Similarity=0.250  Sum_probs=107.9

Q ss_pred             EEEEECCC-CCEEEEEeCCCcEEEeecCCCcEEEEEecc---------------cccEEEEEECCCCCEE-EEecCCCcE
Q psy4391          31 SSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGH---------------KLGISDVAWSSDSRLL-VSGSDDKTL   93 (231)
Q Consensus        31 ~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l-~~~~~~g~i   93 (231)
                      ..++++|+ +.++++...++.|++|+..++... .+.+.               ......++++|+++.| ++...++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            46889984 555566667889999998665432 22110               1234578999998855 555667899


Q ss_pred             EEEeCCCceeeeeecC---------------------CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc--
Q psy4391          94 KIWELSSGKCLKTLKG---------------------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP--  150 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--  150 (231)
                      ++||++++.......+                     .-.....++++++|+++++-..+++|++||..++.......  
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G  844 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG  844 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence            9999987543211100                     00123578899999988888899999999998775432221  


Q ss_pred             -----------CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce
Q psy4391         151 -----------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (231)
Q Consensus       151 -----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (231)
                                 +.-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus       845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                       1112457889999999888888899999999988764

>KOG4532|consensus

Probab=99.04  E-value=1.3e-07  Score=68.22  Aligned_cols=195  Identities=14%  Similarity=0.089  Sum_probs=124.6

Q ss_pred             EEEEECCC-----CCEEEEEeCCCcEEEeecCCCc-EEEEEecccccEEEEE-ECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          31 SSVKFSPN-----GEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVA-WSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        31 ~~~~~~~~-----~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      ..+.|-|.     -..||.|+..|...+|...+.. ..+....+..+|.-.. .......+..++.|+++++.+++.+..
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence            34666663     2367888899999999876432 2222222222221110 011122356677888888888775443


Q ss_pred             eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce--ee-eccCCCCCeEEEEEcCCCCeEEEEecCCeEEEE
Q psy4391         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC--LK-TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~  180 (231)
                      ...+....-.+..+.++++++++++.+....|-.|.+.....  ++ .....++.-.+..|+.....+|++.+||.+.+|
T Consensus       151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~  230 (344)
T KOG4532|consen  151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIY  230 (344)
T ss_pred             cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEE
Confidence            333322222367889999999999999999999998865432  22 122233445677899999999999999999999


Q ss_pred             eCCCCceeee----eecCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEeC
Q psy4391         181 DTASGQCLKT----LIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDS  225 (231)
Q Consensus       181 d~~~~~~~~~----~~~~~~~~i~~~~~s~~g~--~l~~~s~d~~v~vwd~  225 (231)
                      |++.......    -..++...+..+.|++-|.  +|+..-.-+.+++-|.
T Consensus       231 DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~  281 (344)
T KOG4532|consen  231 DVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT  281 (344)
T ss_pred             EecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence            9986543221    1234667788899998663  4454444567777775

>KOG2695|consensus

Probab=99.04  E-value=1.1e-09  Score=81.26  Aligned_cols=158  Identities=19%  Similarity=0.315  Sum_probs=113.1

Q ss_pred             EEEECCC--CCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc-----eee
Q psy4391          32 SVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG-----KCL  104 (231)
Q Consensus        32 ~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~-----~~~  104 (231)
                      .++|+-+  |-. ++.+-+-.+-+-+++++... .+. .+..|.++.|.-.++.+..|+.+|.|..+|++..     .+.
T Consensus       216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a  292 (425)
T KOG2695|consen  216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA  292 (425)
T ss_pred             hhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence            3466532  233 33445666777777776433 333 4567888889888899999999999999999864     233


Q ss_pred             eeecCCCcceEEEEECC-CCCEEEEeecCCcEEEEECCCCce---eeeccCCCCCe--EEEEEcCCCCeEEEEecCCeEE
Q psy4391         105 KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKC---LKTLPAHSDPV--SAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      +.+ -|.+.++++..-. +++.|.+.+.+|.|++||++.-++   +....+|...-  ..+...+....+++++.|...+
T Consensus       293 ~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR  371 (425)
T KOG2695|consen  293 QRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR  371 (425)
T ss_pred             EEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence            333 3667777766544 678899999999999999997776   66666664322  2334566777888899999999


Q ss_pred             EEeCCCCceeeeeec
Q psy4391         179 IWDTASGQCLKTLID  193 (231)
Q Consensus       179 v~d~~~~~~~~~~~~  193 (231)
                      +|.++.+..+.++..
T Consensus       372 iWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  372 IWSLDSGHLLCTIPF  386 (425)
T ss_pred             EEecccCceeeccCC
Confidence            999999988776643

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.03  E-value=2.2e-07  Score=72.47  Aligned_cols=193  Identities=21%  Similarity=0.333  Sum_probs=128.8

Q ss_pred             cceEEEEECCCCC--EEEE-----EeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC-----------
Q psy4391          28 KAVSSVKFSPNGE--WLAS-----SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-----------   89 (231)
Q Consensus        28 ~~i~~~~~~~~~~--~l~~-----~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------   89 (231)
                      ..|....|+|.++  .|+.     .+..+.+++|.+........-.-....-..+.|.+.|++++.--.           
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg  253 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG  253 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence            5678888888644  3442     456788999988655444332222223345789999988764211           


Q ss_pred             CCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEee--cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCe
Q psy4391          90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSL  167 (231)
Q Consensus        90 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  167 (231)
                      ...++++++.... +.......++|....|.|.++.+++.+  ....+.++|++.. ....+.  +..-..+.|+|.+++
T Consensus       254 esnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~  329 (561)
T COG5354         254 ESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERY  329 (561)
T ss_pred             cceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccE
Confidence            2467788877332 222224467899999999988776654  5778899999855 333332  334456789999999


Q ss_pred             EEEEecC---CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe------CCCeEEEEeCC
Q psy4391         168 IVSSSYD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT------LDNTLKLWDSY  226 (231)
Q Consensus       168 l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s------~d~~v~vwd~~  226 (231)
                      ++.++.|   |.+.+||............  .....-+.|+|||+++.+..      .|+.|+|||..
T Consensus       330 il~agF~nl~gni~i~~~~~rf~~~~~~~--~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         330 ILFAGFDNLQGNIEIFDPAGRFKVAGAFN--GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             EEEecCCccccceEEeccCCceEEEEEee--cCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            9988766   6899999887655442222  22234578999999987765      37899999963

>KOG1912|consensus

Probab=99.01  E-value=6.7e-08  Score=79.01  Aligned_cols=205  Identities=18%  Similarity=0.233  Sum_probs=139.8

Q ss_pred             eecccccceEEEEECCCC-----------C-EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECC---CC-CEEE
Q psy4391          22 TLAGHTKAVSSVKFSPNG-----------E-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS---DS-RLLV   85 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~-----------~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~   85 (231)
                      ++.-|...|+.+.|.|..           + +||++...|.|.+||.........+..+..++.+++|-+   +. ..++
T Consensus        50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll  129 (1062)
T KOG1912|consen   50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL  129 (1062)
T ss_pred             ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence            445688999999998632           1 467788889999999988877778888888899999965   34 4677


Q ss_pred             EecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCC-CCEEEEeecCCcEEEEECC-C------CceeeeccCCCC---
Q psy4391          86 SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVR-T------GKCLKTLPAHSD---  154 (231)
Q Consensus        86 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~-~------~~~~~~~~~~~~---  154 (231)
                      +-.....+.+|+..+|+..-..........++.++|- .+.+..-+..|.+-+.+.- .      ++.......|.+   
T Consensus       130 aIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~  209 (1062)
T KOG1912|consen  130 AIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH  209 (1062)
T ss_pred             EecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh
Confidence            7778889999999999887666655566667888883 3444444444555444331 1      111111111111   


Q ss_pred             ----------------------CeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCC--CE
Q psy4391         155 ----------------------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG--KY  210 (231)
Q Consensus       155 ----------------------~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~  210 (231)
                                            ....++|+|.-+.++-......+.++|++-..++..+.-+.+ .+..+.+-|++  +.
T Consensus       210 lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~  288 (1062)
T KOG1912|consen  210 LERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDA  288 (1062)
T ss_pred             hhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcce
Confidence                                  012356788777666667788899999998888777654332 33456665554  68


Q ss_pred             EEEEeCCCeEEEEeCCC
Q psy4391         211 ILAATLDNTLKLWDSYP  227 (231)
Q Consensus       211 l~~~s~d~~v~vwd~~~  227 (231)
                      |++...||++.+|-...
T Consensus       289 LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  289 LFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEEEecCCeEEEEEeec
Confidence            99999999999997643

>KOG2041|consensus

Probab=99.00  E-value=3.9e-09  Score=85.43  Aligned_cols=154  Identities=18%  Similarity=0.309  Sum_probs=123.2

Q ss_pred             ccEEEEEECCCCCEEEEecCCCcEEEEeCCCce---------------eeeeecCCCcceEEEEECCCCCEEEEeecCCc
Q psy4391          70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK---------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES  134 (231)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  134 (231)
                      ....++.|.....+|++|+.||.+++..+.+..               ..+.+.+|...|..+.|+.+.+.+.+...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            457789999999999999999999998775422               12456789999999999999999999999999


Q ss_pred             EEEEECCCCceeeeccC--CCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEE
Q psy4391         135 VRIWDVRTGKCLKTLPA--HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL  212 (231)
Q Consensus       135 i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  212 (231)
                      |.||-+..|+....+..  ..+.|.+|+|+.||..++....||.|.+=.+..++....-.  .......+.|++|.+.++
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc--chheccceeecccHHHHH
Confidence            99999998876555432  34578999999999999999999998877776655333211  122345678999999999


Q ss_pred             EEeCCCeEEEEeC
Q psy4391         213 AATLDNTLKLWDS  225 (231)
Q Consensus       213 ~~s~d~~v~vwd~  225 (231)
                      .+-.+|.+++||.
T Consensus       173 f~~ange~hlydn  185 (1189)
T KOG2041|consen  173 FKKANGETHLYDN  185 (1189)
T ss_pred             hhhcCCcEEEecc
Confidence            9889999999996

>KOG2315|consensus

Probab=99.00  E-value=1.4e-07  Score=74.36  Aligned_cols=147  Identities=20%  Similarity=0.354  Sum_probs=101.4

Q ss_pred             EEEECCCCC-EEEE--EeCCC---------cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec--CCCcEEEEe
Q psy4391          32 SVKFSPNGE-WLAS--SSADK---------LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS--DDKTLKIWE   97 (231)
Q Consensus        32 ~~~~~~~~~-~l~~--~~~dg---------~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~g~i~~~d   97 (231)
                      .+.|++-|. +|+.  ..-|.         .+++.+.......-.+ ...++|.++.|+|+++.++++-  .=-.+.++|
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifn  300 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFN  300 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEc
Confidence            577888776 3322  22232         4666665522222222 2367899999999998765543  345788999


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeec---CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec-
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF---DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-  173 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  173 (231)
                      ++. .++..+.  .++-.++-|+|.|++++.++.   .|.+.+||+.+.+.+..+.+-  ..+-..|+|||+++++++. 
T Consensus       301 lr~-~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  301 LRG-KPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             CCC-CEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEecc
Confidence            874 4555553  344457889999999988876   478999999998877777653  3345689999999998864 


Q ss_pred             -----CCeEEEEeCCC
Q psy4391         174 -----DGLCRIWDTAS  184 (231)
Q Consensus       174 -----dg~i~v~d~~~  184 (231)
                           |+.++||+...
T Consensus       376 PRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  376 PRLRVDNGIKIWHYTG  391 (566)
T ss_pred             ccEEecCCeEEEEecC
Confidence                 67889998754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.99  E-value=6.2e-07  Score=65.37  Aligned_cols=166  Identities=14%  Similarity=0.246  Sum_probs=106.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec-------ccccEEEEEECCC------CCEEEEecCCCcEEEE
Q psy4391          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-------HKLGISDVAWSSD------SRLLVSGSDDKTLKIW   96 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-------~~~~v~~~~~~~~------~~~l~~~~~~g~i~~~   96 (231)
                      =+.++||||+.+||.+...|+|++||+... ....+..       -...|..+.|.+-      ...|++-.-.|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            457899999999999999999999998643 2233321       1234566666442      1235555667777666


Q ss_pred             eCCC-----ceeeeeec--C-CCcceEEEEECCCCCEEEEeecCC-----------cEEEEECCCCcee-----------
Q psy4391          97 ELSS-----GKCLKTLK--G-HSNYVFCCNFNPQSNLIVSGSFDE-----------SVRIWDVRTGKCL-----------  146 (231)
Q Consensus        97 d~~~-----~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~d~-----------~i~v~d~~~~~~~-----------  146 (231)
                      -+..     .+..+.+.  . ....+.++.++|..++|+.|+...           -+..|-+-++.+.           
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~  204 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI  204 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence            5422     22223332  1 245688899999999888776421           2445543222110           


Q ss_pred             ---------eec---------cCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCC
Q psy4391         147 ---------KTL---------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN  196 (231)
Q Consensus       147 ---------~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  196 (231)
                               .++         ......|..|..+|||..||+...+|.|.+|++.+-+..+.+...+.
T Consensus       205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq  272 (282)
T PF15492_consen  205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ  272 (282)
T ss_pred             cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence                     000         11245788999999999999999999999999998877666654443

>KOG3914|consensus

Probab=98.99  E-value=1.7e-08  Score=76.24  Aligned_cols=155  Identities=17%  Similarity=0.229  Sum_probs=102.7

Q ss_pred             EEEEEECCCCCEEEEecCCCcEEEEeCCCcee-eeee--cCCCcceEEEEECCCCCEEEEeecCCcE---EEEECCCCce
Q psy4391          72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC-LKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESV---RIWDVRTGKC  145 (231)
Q Consensus        72 v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~-~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i---~v~d~~~~~~  145 (231)
                      ......++.++.+|.+..+....+++...... .+.+  ..-.....++.+-.+......+..-|.+   .+|....+. 
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-  143 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-  143 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-
Confidence            44556678888888888877766666654322 1111  1111222334444444444444444444   444444333 


Q ss_pred             eeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       146 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ...+.+|-.-++.++++||+++++++..|..|++-....-..+..+...|..=|..++.-++ +.|++++.|++|++||.
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~  222 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI  222 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence            34445777788999999999999999999999998877666666666666666777887765 55899999999999997


Q ss_pred             CCC
Q psy4391         226 YPC  228 (231)
Q Consensus       226 ~~~  228 (231)
                      ..+
T Consensus       223 ~sg  225 (390)
T KOG3914|consen  223 TSG  225 (390)
T ss_pred             ccC
Confidence            443

>KOG1064|consensus

Probab=98.99  E-value=1.1e-08  Score=90.20  Aligned_cols=156  Identities=15%  Similarity=0.266  Sum_probs=120.3

Q ss_pred             cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeec-CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce
Q psy4391          67 GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC  145 (231)
Q Consensus        67 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  145 (231)
                      .+-..|..+.=+|...+.++|+.||.+++|....++.+..++ ...+.+..+.|+.+|+.+..+..||.+.+|... .+.
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence            344557777778888899999999999999998877766665 233778889999999999999999999999987 555


Q ss_pred             eeeccCCCCCeEEEEEcCCCCeEEEEe---cCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q psy4391         146 LKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (231)
Q Consensus       146 ~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~v  222 (231)
                      ....+.|........|--  ..+++++   .++.+.+||.--......+...+....+.+++-|..+.|++|+.+|.|++
T Consensus      2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred             eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence            666677777777777764  5566554   35789999964322211222344556788999999999999999999999


Q ss_pred             EeC
Q psy4391         223 WDS  225 (231)
Q Consensus       223 wd~  225 (231)
                      ||.
T Consensus      2363 ~D~ 2365 (2439)
T KOG1064|consen 2363 FDI 2365 (2439)
T ss_pred             eeh
Confidence            996

>KOG4190|consensus

Probab=98.97  E-value=6.6e-09  Score=81.94  Aligned_cols=202  Identities=18%  Similarity=0.288  Sum_probs=135.7

Q ss_pred             ceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec--ccccEEEEEECC--CCCEE-EEecCCC
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG--HKLGISDVAWSS--DSRLL-VSGSDDK   91 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l-~~~~~~g   91 (231)
                      -..+++.+.|+.+|..+.|..+-+.++++  ||.|.+||..-++....+..  ..+.+..+.--+  +...+ +.++...
T Consensus       774 saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeS  851 (1034)
T KOG4190|consen  774 SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAES  851 (1034)
T ss_pred             ceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchh
Confidence            33567888999999999999998888765  89999999877765543321  112222222223  23333 3446788


Q ss_pred             cEEEEeCCCceeeeeec-----CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCC
Q psy4391          92 TLKIWELSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS  166 (231)
Q Consensus        92 ~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  166 (231)
                      +|+++|.+..+....++     +.+..+.++++.+.|+.++.+-.+|.+.+.|.++|+.+..+...+.....++ .|..+
T Consensus       852 TVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq  930 (1034)
T KOG4190|consen  852 TVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQ  930 (1034)
T ss_pred             hheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhH
Confidence            99999998877665554     3345678899999999999999999999999999998887766554333333 35667


Q ss_pred             eEEEEecCCeEEE-EeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         167 LIVSSSYDGLCRI-WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       167 ~l~~~~~dg~i~v-~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      .++....|..+.+ |-...+........... +...  ...-|.-|++....+.+.||-
T Consensus       931 ~L~~saldHslaVnWhaldgimh~q~kpppe-pahf--lqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  931 ALAQSALDHSLAVNWHALDGIMHLQDKPPPE-PAHF--LQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             HHHhhcccceeEeeehhcCCeeeeccCCCCc-chhh--hhccCceeEEeccCcEEEEEe
Confidence            7777778888888 86655543322211111 1111  223456677777777888875

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.97  E-value=6.7e-07  Score=68.95  Aligned_cols=181  Identities=12%  Similarity=0.147  Sum_probs=111.4

Q ss_pred             CCCEEEEEeCC-----CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC----------CCcEEEEeCCCce
Q psy4391          38 NGEWLASSSAD-----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD----------DKTLKIWELSSGK  102 (231)
Q Consensus        38 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------~g~i~~~d~~~~~  102 (231)
                      ++.+++.....     +.|.+.|..+.+....+.....+- .+ ++||++.++++..          +..|.+||..+.+
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~   88 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL   88 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence            44555443332     889999999988888877544333 34 9999998876654          6799999999999


Q ss_pred             eeeeecCCCc-------ceEEEEECCCCCEEEEeec--CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec
Q psy4391         103 CLKTLKGHSN-------YVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus       103 ~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                      .+..+.....       ......++|+|++++....  +..|.++|+.+++.+..+... ++..-...+++..+  +-+.
T Consensus        89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~--~~~~  165 (352)
T TIGR02658        89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFF--MHCR  165 (352)
T ss_pred             EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccE--EEee
Confidence            8877764222       2236789999999998763  688999999999988877652 22222223222222  2234


Q ss_pred             CCeEEEEeCCC-Ccee-ee--eecCCCCCe-EEEEECC-CCCEEEEEeCCCeEEEEe
Q psy4391         174 DGLCRIWDTAS-GQCL-KT--LIDDDNPPV-SFVKFSP-NGKYILAATLDNTLKLWD  224 (231)
Q Consensus       174 dg~i~v~d~~~-~~~~-~~--~~~~~~~~i-~~~~~s~-~g~~l~~~s~d~~v~vwd  224 (231)
                      ||......+.+ ++.. ..  +...+..++ ..-.+.+ +|+++.+... |.|.+.|
T Consensus       166 Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id  221 (352)
T TIGR02658       166 DGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQID  221 (352)
T ss_pred             cCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEe
Confidence            55444433322 2111 11  111111010 0113345 8887777665 9999998

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.93  E-value=5.4e-09  Score=54.00  Aligned_cols=38  Identities=37%  Similarity=0.749  Sum_probs=35.2

Q ss_pred             eeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEee
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG   55 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~   55 (231)
                      ....++.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            35678889999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714|consensus

Probab=98.93  E-value=1e-08  Score=73.42  Aligned_cols=146  Identities=17%  Similarity=0.255  Sum_probs=95.4

Q ss_pred             CCEEEEecCCCcEEEEeCCCce-eeeeecCCCcceEEEEECCCCCEEEEee-----cCCcEEEEECCCCceeeeccCCCC
Q psy4391          81 SRLLVSGSDDKTLKIWELSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGS-----FDESVRIWDVRTGKCLKTLPAHSD  154 (231)
Q Consensus        81 ~~~l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~d~~i~v~d~~~~~~~~~~~~~~~  154 (231)
                      +..++++..||.+.+.+.+.-. ..+.+........+.+.-..++++.++.     ..+..+.|+++..+.+..-.....
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~  180 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD  180 (319)
T ss_pred             CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence            4568899999999999876511 1111111111111222233445554432     234466677664433222222233


Q ss_pred             CeEEEEEcCCCC-eEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCC
Q psy4391         155 PVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       155 ~v~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~s~d~~v~vwd~~  226 (231)
                      .+.+++-+|..+ .+++|+.||.+.+||.++......+...++.++..+-|+|. +..|++++.||.+-.||..
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            588888888554 56678889999999999887666667777888999999985 5799999999999999975

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.91  E-value=8.9e-07  Score=65.31  Aligned_cols=183  Identities=21%  Similarity=0.188  Sum_probs=115.9

Q ss_pred             CCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee-cCCC---c
Q psy4391          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL-KGHS---N  112 (231)
Q Consensus        37 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~-~~~~---~  112 (231)
                      +++..+++++.++.+..||..+++.......... +.... ...+..++++..++.++.+|.++++..... ....   .
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP-ISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-GGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-cccee-eecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            3567777778999999999999987766653211 11001 123455666767889999999999877663 2211   1


Q ss_pred             ceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCC----------eEEEEEcCCCCeEEEEecCCe-EEEEe
Q psy4391         113 YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP----------VSAVHFNRDGSLIVSSSYDGL-CRIWD  181 (231)
Q Consensus       113 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~dg~-i~v~d  181 (231)
                      ..........+..++.+..++.|..+|+++|+.+.........          +..-....++ .++.++.++. +.+ |
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d  189 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-D  189 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-E
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-E
Confidence            1111222223778888888999999999999987776553321          1122222344 6667777775 555 9


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +.+++.+-  ..... .... ....++..|++++.++.|..||...
T Consensus       190 ~~tg~~~w--~~~~~-~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  190 LATGEKLW--SKPIS-GIYS-LPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             TTTTEEEE--EECSS--ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred             CCCCCEEE--EecCC-CccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence            99998542  22212 1222 1457778888888999999999754

...

>KOG2114|consensus

Probab=98.91  E-value=5.5e-07  Score=74.51  Aligned_cols=191  Identities=15%  Similarity=0.205  Sum_probs=125.0

Q ss_pred             EECCCCCEEEEEeCCCcEEEeecCCCcEEEEEeccccc-EEEEEECCCCCEEEEecCCC-----cEEEEeCCCc------
Q psy4391          34 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSRLLVSGSDDK-----TLKIWELSSG------  101 (231)
Q Consensus        34 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~g-----~i~~~d~~~~------  101 (231)
                      .|++.+..++.|+.+|.|.+.+.. -+....+..+... +..+-...+..+|++.+.|+     .+++|+++..      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            478889999999999999888642 2333455555555 44443334446777776654     4899998742      


Q ss_pred             eee---eeec----CCCcceEEEEECCCCCEEEEeecCCcEEEEECC----CCceeeeccCCCCCeEEEEEcCCCCeEEE
Q psy4391         102 KCL---KTLK----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR----TGKCLKTLPAHSDPVSAVHFNRDGSLIVS  170 (231)
Q Consensus       102 ~~~---~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  170 (231)
                      .++   +.+.    ....++.+++++.+-+.+|+|-.+|.|..+.-.    .+..........++|+.+++..+++.++-
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            122   1121    124567788899999999999999999988532    11112223345679999999988887333


Q ss_pred             EecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         171 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +.....|.+|.+............++.++.+-.+++....+++++ +..+.+||+.
T Consensus       189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd  243 (933)
T KOG2114|consen  189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSD  243 (933)
T ss_pred             EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCC
Confidence            344567889988844423344556666777777776555355544 5789999973

>KOG0309|consensus

Probab=98.88  E-value=3.4e-08  Score=80.29  Aligned_cols=211  Identities=22%  Similarity=0.363  Sum_probs=139.0

Q ss_pred             CccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC-cEEEEEecc-cccEEEEEECCCC--CEEEEecC
Q psy4391          14 KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGH-KLGISDVAWSSDS--RLLVSGSD   89 (231)
Q Consensus        14 ~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~-~~~v~~~~~~~~~--~~l~~~~~   89 (231)
                      .+.+-...++.. .+.+.++..+|.|+-++.++.-|-+ +.|+... ...+.+... .-.|.+..|+|..  .+-++...
T Consensus        12 s~tf~kslsl~v-~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts   89 (1081)
T KOG0309|consen   12 SPTFGKSLSLKV-DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS   89 (1081)
T ss_pred             CCccCceeEEEe-cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC
Confidence            444555555532 4577889999999999988877654 4454432 222222211 1235567787643  33444444


Q ss_pred             CCcEEEEeCCCc---eeeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCce-eeeccCCCCCeEEEEEcCC
Q psy4391          90 DKTLKIWELSSG---KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFNRD  164 (231)
Q Consensus        90 ~g~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~  164 (231)
                      ...-.+|++...   .....+-+|...++.+.|+|+. ..+++++.|..+..||+++... +..+..-......++|+..
T Consensus        90 ~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk  169 (1081)
T KOG0309|consen   90 NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK  169 (1081)
T ss_pred             cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeeccc
Confidence            445557887643   2334456788889999999875 5789999999999999997642 3333333345667899876


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeCC
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~s~d~~v~vwd~~  226 (231)
                      ...+.+.+....+.+||++.+.........+...++.++|..- ...+.+++.|++|++||..
T Consensus       170 ~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~  232 (1081)
T KOG0309|consen  170 DPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS  232 (1081)
T ss_pred             CcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence            6666667778899999999876554444445556666666532 2456788899999999974

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.87  E-value=9.4e-09  Score=53.08  Aligned_cols=38  Identities=37%  Similarity=0.868  Sum_probs=35.5

Q ss_pred             ceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         144 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       144 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      +++..+..|.++|.+++|+|++.++++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46778889999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.87  E-value=1e-06  Score=69.66  Aligned_cols=176  Identities=17%  Similarity=0.087  Sum_probs=109.9

Q ss_pred             CEEEEEeCCCcEEEeecCCCcEEEEEeccc----cc---EEEEEECC--CCCEEEEecCCCcEEEEeCCCceeeeeecCC
Q psy4391          40 EWLASSSADKLIKIWGAYDGKFEKTISGHK----LG---ISDVAWSS--DSRLLVSGSDDKTLKIWELSSGKCLKTLKGH  110 (231)
Q Consensus        40 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~----~~---v~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~  110 (231)
                      ..++.+..+|.+..+|..+++.........    ..   ...+.-+|  .+..++.++.+|.++.+|.++++........
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~  270 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS  270 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC
Confidence            356667778888888888876554322100    00   00000011  2457778888999999999988765544321


Q ss_pred             CcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC-CCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceee
Q psy4391         111 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK  189 (231)
Q Consensus       111 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~  189 (231)
                      .  ....  ...+..++.++.+|.+..+|..+++.+....... ........  .+..+++++.+|.+.++|..+++.+.
T Consensus       271 ~--~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~  344 (377)
T TIGR03300       271 S--YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA  344 (377)
T ss_pred             C--ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            1  1111  1246678888899999999999998776553211 12222222  35688899999999999999998877


Q ss_pred             eeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         190 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       190 ~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      ++............+. + ..|++++.||.|..|
T Consensus       345 ~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       345 RLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence            6654332212222222 2 358888899988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.86  E-value=6.3e-08  Score=71.30  Aligned_cols=197  Identities=22%  Similarity=0.443  Sum_probs=126.0

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc-----EEEEEeccc------------ccEEEEEECCCC--CEEEEe
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----FEKTISGHK------------LGISDVAWSSDS--RLLVSG   87 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~~   87 (231)
                      ...|+++.|...|.++++|...|.|.+|..+...     ....+.+|.            ..|..+.|..++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4579999999999999999999999998764322     112233332            246778887654  346677


Q ss_pred             cCCCcEEEEeCCCcee-------------------ee--------ee----------------cCCCcceEEEEECCCCC
Q psy4391          88 SDDKTLKIWELSSGKC-------------------LK--------TL----------------KGHSNYVFCCNFNPQSN  124 (231)
Q Consensus        88 ~~~g~i~~~d~~~~~~-------------------~~--------~~----------------~~~~~~v~~~~~~~~~~  124 (231)
                      +.|.+|++|.+.....                   +.        .+                ..|.-.+.++.++.|..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            7899999998643210                   00        00                12233355667777766


Q ss_pred             EEEEeecCCcEEEEECCCCce---eeeccCC-----CCCeEEEEEcCCC-CeEEEEecCCeEEEEeCCCCce------ee
Q psy4391         125 LIVSGSFDESVRIWDVRTGKC---LKTLPAH-----SDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQC------LK  189 (231)
Q Consensus       125 ~l~~~~~d~~i~v~d~~~~~~---~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~------~~  189 (231)
                      .+++ ..|=+|.+|++.....   +..+..|     ..-|++..|+|.. ..+.-.+..|.|++-|++....      +.
T Consensus       186 t~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            6664 4456788998875432   2222333     2356778899854 4555667789999999983211      11


Q ss_pred             e---------eecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         190 T---------LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       190 ~---------~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .         +..+..+.|+.+.|+++|+++++-+. .+|++||.
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDv  308 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDV  308 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEec
Confidence            1         11122345778999999999987654 59999995

>KOG2066|consensus

Probab=98.84  E-value=2.3e-07  Score=76.08  Aligned_cols=181  Identities=17%  Similarity=0.234  Sum_probs=124.3

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeee
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      ...++|++++  ++.++.|+-+|.+++++... .. .....|...      ..+|+++++|+.||.|.+-.+-+.+....
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            4567788886  67899999999999998743 22 333333322      56899999999999999988877766555


Q ss_pred             ecCCCcceEEEEECCC-----CCEEEEeecCCcEEEEECCCC--ceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEE
Q psy4391         107 LKGHSNYVFCCNFNPQ-----SNLIVSGSFDESVRIWDVRTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  179 (231)
                      +.- .-++.+++++|+     .+.+++|+.-| +.++.-+--  +....+....++|.++.|.  |.++|-++.+| +++
T Consensus       109 ~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v  183 (846)
T KOG2066|consen  109 YDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV  183 (846)
T ss_pred             Eec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence            543 356778899997     46788899888 777653311  1111345668899999996  78888887666 799


Q ss_pred             EeCCCCceeeeeecCCCCC-----eEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         180 WDTASGQCLKTLIDDDNPP-----VSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~-----i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      ||..+.+.+..+......+     -..+.|.++.+.++  +...+|+|..
T Consensus       184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~  231 (846)
T KOG2066|consen  184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICS  231 (846)
T ss_pred             EeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEE
Confidence            9999887766554333211     12467887765444  3445666654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.82  E-value=4.7e-06  Score=65.92  Aligned_cols=183  Identities=18%  Similarity=0.114  Sum_probs=110.2

Q ss_pred             CCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEE
Q psy4391          38 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC  117 (231)
Q Consensus        38 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~  117 (231)
                      .+..++.++.+|.+.-+|..+++................  .++..++.++.++.+..+|.++++.+.............
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p  141 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP  141 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence            366788888899999999888887665443221111222  246678888889999999999988765544322111111


Q ss_pred             EECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeE-----EEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeee
Q psy4391         118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVS-----AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI  192 (231)
Q Consensus       118 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  192 (231)
                      ..  .+..++.+..++.++.+|.++|+.+...........     .....  +..++.+..+|.+..+|+.+++.+-...
T Consensus       142 ~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~  217 (377)
T TIGR03300       142 LV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQR  217 (377)
T ss_pred             EE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeec
Confidence            11  245677778899999999999988776544322111     11111  2467778888999999998887543221


Q ss_pred             cCCC---CC---eEEEEECC--CCCEEEEEeCCCeEEEEeCC
Q psy4391         193 DDDN---PP---VSFVKFSP--NGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       193 ~~~~---~~---i~~~~~s~--~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ....   ..   ...+.-+|  .+..+++++.+|.+..||..
T Consensus       218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~  259 (377)
T TIGR03300       218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR  259 (377)
T ss_pred             cccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence            1000   00   00000011  24466667777777777753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0882|consensus

Probab=98.80  E-value=1.4e-07  Score=72.58  Aligned_cols=199  Identities=21%  Similarity=0.270  Sum_probs=135.3

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCC--C-cEEEEEecccccEEEEEECCCCCEEEEecC-CCcEEEEeCCCc
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD--G-KFEKTISGHKLGISDVAWSSDSRLLVSGSD-DKTLKIWELSSG  101 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~~~d~~~~  101 (231)
                      |...|+.+.- ...+++.+++.||.++.|.-..  + +...-+..|...+.+++.+-++..+.+.+. |..++++|+++-
T Consensus         8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            5666665544 3567889999999999997532  1 122334456667788888889998889777 999999999876


Q ss_pred             eeeeeecCCCcceEEEEEC-CCC---CEEEEe-ecCCcEEEEECCCCce--eeeccCCCCCeEEEEEcCCCCeEEEEecC
Q psy4391         102 KCLKTLKGHSNYVFCCNFN-PQS---NLIVSG-SFDESVRIWDVRTGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~-~~~---~~l~~~-~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      ..+..++...- ...+.|. ..|   ..++.+ -.++.+.++|-....+  ...-..|..+|..+.+.|-+..+.+....
T Consensus        87 DminmiKL~~l-Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~  165 (558)
T KOG0882|consen   87 DMINMIKLVDL-PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS  165 (558)
T ss_pred             chhhhcccccC-CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence            65433332111 1122232 223   244444 4578899999775542  22334678899999999999999999999


Q ss_pred             CeEEEEeCCC-Cceeee-----e--------ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         175 GLCRIWDTAS-GQCLKT-----L--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       175 g~i~v~d~~~-~~~~~~-----~--------~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      |.|..|.... .+..+.     +        .........++.|+|+|..+..-+.|.+|++++..
T Consensus       166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK  231 (558)
T ss_pred             ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence            9999998763 111110     0        01122334678999999999999999999999864

>KOG2695|consensus

Probab=98.79  E-value=2.9e-08  Score=73.85  Aligned_cols=140  Identities=14%  Similarity=0.240  Sum_probs=100.9

Q ss_pred             EEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc----eeeeccCCCCCeEEEE
Q psy4391          85 VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK----CLKTLPAHSDPVSAVH  160 (231)
Q Consensus        85 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~~v~~~~  160 (231)
                      ++.+.+-.+-+-|++++.. +.+. ..+.|.+..|...+++++.|..+|.|-.+|++.+.    ......-|...|+++.
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq  305 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ  305 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence            4455566777778877542 2333 34557778888889999999999999999998752    1122234678888888


Q ss_pred             EcC-CCCeEEEEecCCeEEEEeCCCCce---eeeeecCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         161 FNR-DGSLIVSSSYDGLCRIWDTASGQC---LKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       161 ~~~-~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~-~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ... ++++|++.+.+|.|.+||++.-++   +.....+-+. ...-+-+.+....+++++.|-..|||...
T Consensus       306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            877 788999999999999999987666   4444433221 11223467778889999999999999864

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.78  E-value=1e-06  Score=70.07  Aligned_cols=158  Identities=21%  Similarity=0.187  Sum_probs=100.1

Q ss_pred             ccceEEEEECCCCCEEEEE---eCC-CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEe-cCCC--cEEEEeCC
Q psy4391          27 TKAVSSVKFSPNGEWLASS---SAD-KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG-SDDK--TLKIWELS   99 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~---~~d-g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~g--~i~~~d~~   99 (231)
                      ...+..-+|+|+++.++..   ... ..+.+++..+++...... ....-...+|+|||++|+.+ ..+|  .|+++|+.
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            4467788999999976543   222 358888888776655544 22233456899999988644 4455  46677877


Q ss_pred             CceeeeeecCCCcceEEEEECCCCCEEEEeec-CCc--EEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec-CC
Q psy4391         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DES--VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG  175 (231)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg  175 (231)
                      +++..+ +....+.-..-.|+|+|+.++..+. .|.  |.++|++.+.. ..+....+.-....|+|||++++..+. +|
T Consensus       271 ~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g  348 (425)
T COG0823         271 GKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGG  348 (425)
T ss_pred             CCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCC
Confidence            666333 4433333335679999998877654 444  66667776554 333333333336789999999987664 34


Q ss_pred             e--EEEEeCCCCce
Q psy4391         176 L--CRIWDTASGQC  187 (231)
Q Consensus       176 ~--i~v~d~~~~~~  187 (231)
                      .  |.+.|+.++..
T Consensus       349 ~~~i~~~~~~~~~~  362 (425)
T COG0823         349 QWDIDKNDLASGGK  362 (425)
T ss_pred             ceeeEEeccCCCCc
Confidence            4  66677766553

>KOG2314|consensus

Probab=98.77  E-value=1.5e-06  Score=68.80  Aligned_cols=193  Identities=16%  Similarity=0.228  Sum_probs=117.8

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC-----CcEEEEeCCCceeeee
Q psy4391          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSGKCLKT  106 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----g~i~~~d~~~~~~~~~  106 (231)
                      -+.||.|++++|.... ..|.||+.....+...-.-.-.+|....|+|.++.||.-...     ..+.+-.+.+++.++.
T Consensus       310 ~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt  388 (698)
T KOG2314|consen  310 IFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT  388 (698)
T ss_pred             eEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence            4689999999987665 578888865433322222223568889999998888754321     2456666666665554


Q ss_pred             ecCCCcceEEEEECCCCCEEEEe----------ecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec---
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSG----------SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY---  173 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~----------~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---  173 (231)
                      ..-++-.=..+.|..+|.+|..-          +.-..+.++.++..........-...|.+.+|.|.|..+++-+.   
T Consensus       389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~  468 (698)
T KOG2314|consen  389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV  468 (698)
T ss_pred             ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc
Confidence            44333222345677777776542          11123455555544332222223567888999999998876543   


Q ss_pred             CCeEEEEeCCC-CceeeeeecCCCCCeEEEEECCCCCEEEEEeC---CCeEEEEeC
Q psy4391         174 DGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPNGKYILAATL---DNTLKLWDS  225 (231)
Q Consensus       174 dg~i~v~d~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~---d~~v~vwd~  225 (231)
                      ..++.+|-+.+ ......+..-+....+.+.|+|.|+++++++.   .|.+.++|+
T Consensus       469 k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~  524 (698)
T KOG2314|consen  469 KNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDT  524 (698)
T ss_pred             ccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEec
Confidence            35788887763 22111111122334577899999999987654   689999996

>KOG1920|consensus

Probab=98.76  E-value=3.5e-06  Score=72.37  Aligned_cols=195  Identities=17%  Similarity=0.228  Sum_probs=126.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC----CCcee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL----SSGKC  103 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~----~~~~~  103 (231)
                      ..|.++.|..++.-++.+...|.|.+-|.++.... ....-..+|.+++|+||++.++..+..+++.+-+-    -..+.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            57999999999998888899999998887665432 22334578999999999999988888777765332    00000


Q ss_pred             -------------------eeeecCC---------------------CcceEEEEECCCCCEEEEe-----ecCCcEEEE
Q psy4391         104 -------------------LKTLKGH---------------------SNYVFCCNFNPQSNLIVSG-----SFDESVRIW  138 (231)
Q Consensus       104 -------------------~~~~~~~---------------------~~~v~~~~~~~~~~~l~~~-----~~d~~i~v~  138 (231)
                                         ...+.+.                     .+.-..+.|--||.++|+.     ...+.++||
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                               0111110                     1112347888899999883     223789999


Q ss_pred             ECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe---cCCeEEEEeCCCCceeeee---ecCCCCCeEEEEECCCCCEEE
Q psy4391         139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPNGKYIL  212 (231)
Q Consensus       139 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~---~~~~~~~i~~~~~s~~g~~l~  212 (231)
                      |-+ |..-..-....+--.+++|-|.|..+++..   .|+.|.+|.-. |-....+   ...+..++..++|+.++..||
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLA  305 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILA  305 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCCcee
Confidence            977 432222222233345789999999998764   34568777543 2211111   122333488899999999998


Q ss_pred             E---EeCCCeEEEEeC
Q psy4391         213 A---ATLDNTLKLWDS  225 (231)
Q Consensus       213 ~---~s~d~~v~vwd~  225 (231)
                      +   ......|++|-.
T Consensus       306 v~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  306 VVTSNLENSLVQLWTT  321 (1265)
T ss_pred             eeecccccceEEEEEe
Confidence            8   444556999974

>KOG0309|consensus

Probab=98.75  E-value=1.5e-07  Score=76.67  Aligned_cols=205  Identities=23%  Similarity=0.373  Sum_probs=132.5

Q ss_pred             eEEeecccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcE-EEEEecccccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      +.+-+.+|.+.|+.+-|.|+.. .+++++.|..+..||.+.... ...+..-..+...++|+.....+++.+....+++|
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw  185 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW  185 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence            5677889999999999999665 778999999999999976543 34444444556778998766666667777899999


Q ss_pred             eCCCc-eeeeeecCCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCcee-eeccCCCCCeEEEEEcCCCC--eEEEE
Q psy4391          97 ELSSG-KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCL-KTLPAHSDPVSAVHFNRDGS--LIVSS  171 (231)
Q Consensus        97 d~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~--~l~~~  171 (231)
                      |...+ .++..+++|...+..++|+.. ...+.+.+.|++|++||....... ........++..-++.|-|+  ++.--
T Consensus       186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~  265 (1081)
T KOG0309|consen  186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM  265 (1081)
T ss_pred             eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc
Confidence            99864 577788888888888777653 356788899999999998654321 12222344666666666443  22111


Q ss_pred             ecCCeEEEEeCCC----------CceeeeeecCCCCCeEEEEE--------CCC--CCEEEEEeCCCeEEEEe
Q psy4391         172 SYDGLCRIWDTAS----------GQCLKTLIDDDNPPVSFVKF--------SPN--GKYILAATLDNTLKLWD  224 (231)
Q Consensus       172 ~~dg~i~v~d~~~----------~~~~~~~~~~~~~~i~~~~~--------s~~--g~~l~~~s~d~~v~vwd  224 (231)
                      -.+..+.+++.++          .+.+..+..+. ..|....|        +-|  .-.|++-+.|..+++|-
T Consensus       266 ~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~-D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp  337 (1081)
T KOG0309|consen  266 VGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD-DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP  337 (1081)
T ss_pred             cCCeeeeeccccchhhhhccccCCcceeeecCcc-hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence            1122333333322          22333433322 22222222        112  23688999999999995

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.75  E-value=1e-05  Score=63.50  Aligned_cols=194  Identities=17%  Similarity=0.246  Sum_probs=118.0

Q ss_pred             cceEEEEECCCCCEEEEEeC---------------CCcEEEeecCCCcEEEEEec-------------------------
Q psy4391          28 KAVSSVKFSPNGEWLASSSA---------------DKLIKIWGAYDGKFEKTISG-------------------------   67 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~---------------dg~i~i~~~~~~~~~~~~~~-------------------------   67 (231)
                      ..|.-+.|+|.+++|.+=..               +..+.+||..++..+..+..                         
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~  151 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG  151 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence            46778899999999887433               23588998876643332211                         


Q ss_pred             -----cc---------------ccEEEEEECCCC--CEEEE-----ecCCCcEEEEeCCCceeeeeecCCCcceEEEEEC
Q psy4391          68 -----HK---------------LGISDVAWSSDS--RLLVS-----GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFN  120 (231)
Q Consensus        68 -----~~---------------~~v~~~~~~~~~--~~l~~-----~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~  120 (231)
                           |.               .++....|+|.+  ..|+.     .+..+.+++|.+.....+....-..-.-..+.|+
T Consensus       152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~  231 (561)
T COG5354         152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ  231 (561)
T ss_pred             CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe
Confidence                 11               234556666643  22332     3445567777776444332221111112357788


Q ss_pred             CCCCEEEEee-----------cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE--ecCCeEEEEeCCCCce
Q psy4391         121 PQSNLIVSGS-----------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--SYDGLCRIWDTASGQC  187 (231)
Q Consensus       121 ~~~~~l~~~~-----------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~v~d~~~~~~  187 (231)
                      +.|+++..--           ....+++++++... +.....-.++|...+|.|.++.+++.  ..+-.+.++|++.+ .
T Consensus       232 ~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l  309 (561)
T COG5354         232 VLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L  309 (561)
T ss_pred             cCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-e
Confidence            8887654311           12457888887433 33322447899999999998877654  46788999999876 3


Q ss_pred             eeeeecCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCC
Q psy4391         188 LKTLIDDDNPPVSFVKFSPNGKYILAATLD---NTLKLWDSY  226 (231)
Q Consensus       188 ~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d---~~v~vwd~~  226 (231)
                      ...+...   .-+.+.|+|.+++++.++-|   |.|.+||..
T Consensus       310 ~~~~Pe~---~rNT~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         310 RFYFPEQ---KRNTIFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             EEecCCc---ccccccccCcccEEEEecCCccccceEEeccC
Confidence            3332221   22446789999998887755   588888863

>KOG1832|consensus

Probab=98.74  E-value=1.9e-08  Score=83.41  Aligned_cols=184  Identities=21%  Similarity=0.319  Sum_probs=130.6

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCC--cEEEEeCC
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK--TLKIWELS   99 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g--~i~~~d~~   99 (231)
                      ++..|+...+|++|+-+.++|+.|.-.|.|++|++.+|.......+|...++-+.-+-+|..+++.+...  ...+|++.
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence            3557888999999999999999999999999999999998889999999999988888998877665433  56789986


Q ss_pred             C-ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC----CCCeEEEEEcCCCCeEEEEecC
Q psy4391         100 S-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH----SDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus       100 ~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      . +.+.+.+.+.    .++.|+.....-+.|.......+||++++..+..+...    ...-....|+|+..+++   .|
T Consensus      1176 s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---nd 1248 (1516)
T KOG1832|consen 1176 STGGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---ND 1248 (1516)
T ss_pred             cccCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eC
Confidence            4 4445555432    24566655544555666677889999998765542211    11225678999988776   46


Q ss_pred             CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC
Q psy4391         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~  216 (231)
                      |.  +||.+..+.+..+-.-. - ...=.|+|+|.-++..+.
T Consensus      1249 Gv--LWDvR~~~aIh~FD~ft-~-~~~G~FHP~g~eVIINSE 1286 (1516)
T KOG1832|consen 1249 GV--LWDVRIPEAIHRFDQFT-D-YGGGGFHPSGNEVIINSE 1286 (1516)
T ss_pred             ce--eeeeccHHHHhhhhhhe-e-cccccccCCCceEEeech
Confidence            64  69988776555432111 0 011248999988888774

>KOG2314|consensus

Probab=98.73  E-value=1.6e-06  Score=68.66  Aligned_cols=180  Identities=14%  Similarity=0.233  Sum_probs=119.3

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC-----------CCcEEEEeCC
Q psy4391          31 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-----------DKTLKIWELS   99 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------~g~i~~~d~~   99 (231)
                      +-+.|||.|.+|++--..| |.+|.-.+-...+.+.  ...|.-+.|+|..++|++-+.           ...+.+||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            4588999999999866544 6788765554444444  246888999999999987542           2479999999


Q ss_pred             CceeeeeecCCC---cceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe--cC
Q psy4391         100 SGKCLKTLKGHS---NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YD  174 (231)
Q Consensus       100 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d  174 (231)
                      +|...+.+....   ..-.-..||.|++++|.-.. ..|.+|+..+-..+..-...-..|....|+|.+..||-=.  .+
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence            998777765422   22334689999999998777 4588998776433322222335678889999988776422  11


Q ss_pred             ---CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe
Q psy4391         175 ---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       175 ---g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                         ..+.+..+.+++.+++....+-+. ..+.|..+|.+|..-.
T Consensus       370 ~~parvtL~evPs~~~iRt~nlfnVsD-ckLhWQk~gdyLcvkv  412 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKREIRTKNLFNVSD-CKLHWQKSGDYLCVKV  412 (698)
T ss_pred             CCcceEEEEecCccceeeeccceeeec-cEEEeccCCcEEEEEE
Confidence               245566666665554432211111 2367888898887643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.72  E-value=5.8e-07  Score=71.63  Aligned_cols=113  Identities=24%  Similarity=0.318  Sum_probs=78.5

Q ss_pred             EEEEEECC-CCCEEEEe----cCCCc----EEEEeCCCceee----eeecCCCcceEEEEECCCCCEEEEeecCCcEEEE
Q psy4391          72 ISDVAWSS-DSRLLVSG----SDDKT----LKIWELSSGKCL----KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW  138 (231)
Q Consensus        72 v~~~~~~~-~~~~l~~~----~~~g~----i~~~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~  138 (231)
                      ..++.|+- +...+.+.    +.+|.    -.+|+....+..    ..+ ...+.+.+++++|+...++.|+.||.|.+|
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILY  286 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEE
Confidence            34566665 34444443    22343    345666543321    122 245678899999999999999999999999


Q ss_pred             ECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce
Q psy4391         139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (231)
Q Consensus       139 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (231)
                      |...+...  .....-.++.++|+|+|..+++|+..|.+.+||+.-+..
T Consensus       287 D~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  287 DTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             EcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            98876432  223344568899999999999999999999999865443

>KOG1920|consensus

Probab=98.70  E-value=5.2e-06  Score=71.40  Aligned_cols=159  Identities=15%  Similarity=0.349  Sum_probs=102.5

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeec----CC-------------------CcEEEEEeccc--------------
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGA----YD-------------------GKFEKTISGHK--------------   69 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~----~~-------------------~~~~~~~~~~~--------------   69 (231)
                      ...|.+..|+||++.++..+..+++.+.+.    ..                   |+....+.+..              
T Consensus       109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~  188 (1265)
T KOG1920|consen  109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA  188 (1265)
T ss_pred             cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence            457999999999999988887777766432    10                   11111222111              


Q ss_pred             -------ccEEEEEECCCCCEEEE-----ecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEee---cCCc
Q psy4391          70 -------LGISDVAWSSDSRLLVS-----GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS---FDES  134 (231)
Q Consensus        70 -------~~v~~~~~~~~~~~l~~-----~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~  134 (231)
                             ..-..+.|.-||+++++     ....+.+++||-+ +.....-......-.+++|-|.|.++++..   .++.
T Consensus       189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~  267 (1265)
T KOG1920|consen  189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD  267 (1265)
T ss_pred             ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc
Confidence                   11234899999999887     3333799999987 332222111222334689999999999864   4567


Q ss_pred             EEEEECCC---CceeeeccCCCCCeEEEEEcCCCCeEEE---EecCCeEEEEeCCCCc
Q psy4391         135 VRIWDVRT---GKCLKTLPAHSDPVSAVHFNRDGSLIVS---SSYDGLCRIWDTASGQ  186 (231)
Q Consensus       135 i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~dg~i~v~d~~~~~  186 (231)
                      |.+|.-+.   |...-.+......+..++|+.++..|++   ......|.+|-..+..
T Consensus       268 IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  268 IVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             EEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            88887542   2222233444555899999999999987   4444569999887654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.67  E-value=3.7e-06  Score=66.96  Aligned_cols=162  Identities=21%  Similarity=0.211  Sum_probs=101.9

Q ss_pred             CcEEEEEecccccEEEEEECCCCCEEEEe---cCC-CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEee-cCC
Q psy4391          59 GKFEKTISGHKLGISDVAWSSDSRLLVSG---SDD-KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDE  133 (231)
Q Consensus        59 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~~-g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~  133 (231)
                      +.....+......+..-.|+|+++.++..   ... ..+.++++++++....+.. ...-....|+|||+.++... .||
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~g~~~~P~fspDG~~l~f~~~rdg  260 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-NGNNGAPAFSPDGSKLAFSSSRDG  260 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-CCccCCccCCCCCCEEEEEECCCC
Confidence            44444444444556677899999876544   222 4688999998776555542 22233568999998877654 455


Q ss_pred             c--EEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec-CC--eEEEEeCCCCceeeeeecCCCCCeEEEEECCCC
Q psy4391         134 S--VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG  208 (231)
Q Consensus       134 ~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g  208 (231)
                      .  |+++|+..++. ..+....+.-..-.|+|||++++-.+. .|  .|.++|+..+.. ..+....... ....|+|||
T Consensus       261 ~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~-~~p~~SpdG  337 (425)
T COG0823         261 SPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN-SNPVWSPDG  337 (425)
T ss_pred             CccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC-cCccCCCCC
Confidence            4  77789887763 334443444446789999998876553 44  566778777664 3332222222 256799999


Q ss_pred             CEEEEEeCC-Ce--EEEEe
Q psy4391         209 KYILAATLD-NT--LKLWD  224 (231)
Q Consensus       209 ~~l~~~s~d-~~--v~vwd  224 (231)
                      ++++..+.. |.  |.+.|
T Consensus       338 ~~i~~~~~~~g~~~i~~~~  356 (425)
T COG0823         338 DKIVFESSSGGQWDIDKND  356 (425)
T ss_pred             CEEEEEeccCCceeeEEec
Confidence            999888753 44  44443

>KOG0882|consensus

Probab=98.64  E-value=7e-07  Score=68.92  Aligned_cols=193  Identities=17%  Similarity=0.162  Sum_probs=130.3

Q ss_pred             ccccceEEEEECCCCCEEEEEeC-CCcEEEeecCCCcEEEEEecccccEEEEEECC-CC---CEEE-EecCCCcEEEEeC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DS---RLLV-SGSDDKTLKIWEL   98 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~l~-~~~~~g~i~~~d~   98 (231)
                      .|...|.+++.+-+|-++.+.+. |..++++|+++-.....+.-...+ ..+.|.. .|   ..|+ +.-.++.+.++|-
T Consensus        51 aHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~  129 (558)
T KOG0882|consen   51 AHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDG  129 (558)
T ss_pred             HHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECC
Confidence            56777888899999998888666 999999998765444333321111 1223322 22   1333 3445789999997


Q ss_pred             CCce--eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCC------Ccee---------eeccCCCCCeEEEEE
Q psy4391          99 SSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT------GKCL---------KTLPAHSDPVSAVHF  161 (231)
Q Consensus        99 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~------~~~~---------~~~~~~~~~v~~~~~  161 (231)
                      ....  ....-+-|.++|..+.+++.+..+.+....|.|..|....      .+..         ..+........++.|
T Consensus       130 ~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Ef  209 (558)
T KOG0882|consen  130 FGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEF  209 (558)
T ss_pred             cCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEE
Confidence            6433  2222345778899999999999999999999999998763      1110         111222345678999


Q ss_pred             cCCCCeEEEEecCCeEEEEeCCCCceeeeeec--------------------------------CCCCCeEEEEECCCCC
Q psy4391         162 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLID--------------------------------DDNPPVSFVKFSPNGK  209 (231)
Q Consensus       162 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--------------------------------~~~~~i~~~~~s~~g~  209 (231)
                      +|++..+.+-+.|..|++++..+++.++.+..                                ........+.|+..|.
T Consensus       210 sp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~  289 (558)
T KOG0882|consen  210 SPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGN  289 (558)
T ss_pred             ccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCC
Confidence            99999999999999999999998875443210                                1111234567999999


Q ss_pred             EEEEEeCCC
Q psy4391         210 YILAATLDN  218 (231)
Q Consensus       210 ~l~~~s~d~  218 (231)
                      +|+-++.=|
T Consensus       290 flly~t~~g  298 (558)
T KOG0882|consen  290 FLLYGTILG  298 (558)
T ss_pred             EEEeeccee
Confidence            998887543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.63  E-value=1.1e-05  Score=59.38  Aligned_cols=143  Identities=19%  Similarity=0.096  Sum_probs=92.8

Q ss_pred             CCcEEEeecCCCcEEEEEecc--cccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCE
Q psy4391          48 DKLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL  125 (231)
Q Consensus        48 dg~i~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  125 (231)
                      +|.|..+|..+++......-.  ....... ..+++..+++++.++.+..||..+++.+.............  ...+..
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--VVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--EEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee--eecccc
Confidence            678888998888877666431  1111111 22356677788899999999999998776655322111011  123556


Q ss_pred             EEEeecCCcEEEEECCCCceeeec-cCCC---CCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeec
Q psy4391         126 IVSGSFDESVRIWDVRTGKCLKTL-PAHS---DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID  193 (231)
Q Consensus       126 l~~~~~d~~i~v~d~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  193 (231)
                      ++.+..++.++.+|..+|+.+... ....   .....+....++..++++..++.+..+|+++|+.+-....
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence            677778889999999999988774 3221   1122223333477888888899999999999988665544

...

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=0.00013  Score=57.81  Aligned_cols=192  Identities=15%  Similarity=0.183  Sum_probs=131.2

Q ss_pred             EEEEECCCCCEEEEE-eCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC---CCcEEEEeCCCceeeee
Q psy4391          31 SSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD---DKTLKIWELSSGKCLKT  106 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~g~i~~~d~~~~~~~~~  106 (231)
                      ..++.++.+..++.. ..++.|.+.|..+.+......... ....++++|+++.+..+..   ++.+.+.|..+.+....
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            467788888866554 445889999976665555544322 5667899999988776655   67888899888877766


Q ss_pred             ecCCCcceEEEEECCCCCEEEEee-cCCcEEEEECCCCceee-----eccCCCCCeEEEEEcCCCCeEEEEecC---CeE
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKCLK-----TLPAHSDPVSAVHFNRDGSLIVSSSYD---GLC  177 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i  177 (231)
                      ......+ ..++++|+|+.++... .++.+.+.|.+......     ..... .....+.++|++..+.+....   +.+
T Consensus       156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceE
Confidence            5543333 6789999999766665 78899999977654432     12222 233567899999976655443   589


Q ss_pred             EEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      ...|..++.............-..+..+|+|.++.+... .+.+.+-|.
T Consensus       234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~  282 (381)
T COG3391         234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDG  282 (381)
T ss_pred             EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence            999998887665422211102345789999998888744 478877775

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.61  E-value=8.4e-05  Score=54.81  Aligned_cols=199  Identities=17%  Similarity=0.253  Sum_probs=112.0

Q ss_pred             eecccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcEEEEEecc-cccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          22 TLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      .+.+-...++.++|.|+.+ ++++....+.|..++. +++..+.+.-. .....++++..++.++++.-.++.+.+.++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4556667799999999766 5566777788888886 46666666422 3567888998888877777778889888873


Q ss_pred             Cce------eeeeec-----CCCcceEEEEECCCCCEEEEeecCCcEEEEECCC---Cceeee--------ccCCCCCeE
Q psy4391         100 SGK------CLKTLK-----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT---GKCLKT--------LPAHSDPVS  157 (231)
Q Consensus       100 ~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~--------~~~~~~~v~  157 (231)
                      ...      ....+.     .++..+-.++|++.++.++.+-+..-..+|.++.   ...+..        .......++
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            311      111121     2334578899999988888777776667776653   111110        112233578


Q ss_pred             EEEEcCCC-CeEEEEecCCeEEEEeCCCCceeeeeecCC--------CCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         158 AVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDD--------NPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       158 ~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--------~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      +++++|.. .+++....+..+..+| ..++.+..+....        -++-..|+|+++|++.+ .+.-+...+|
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence            89999854 5566666778888888 5566555443221        23457799999996544 4455544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.60  E-value=2e-06  Score=63.58  Aligned_cols=198  Identities=21%  Similarity=0.432  Sum_probs=125.8

Q ss_pred             ccceEEEEECCCCC--EEEEEeCCCcEEEeecCCCcEE---------------------------EEE------------
Q psy4391          27 TKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFE---------------------------KTI------------   65 (231)
Q Consensus        27 ~~~i~~~~~~~~~~--~l~~~~~dg~i~i~~~~~~~~~---------------------------~~~------------   65 (231)
                      ...|..+.|..++.  .++..+.|.+|++|.+......                           ..+            
T Consensus        85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~  164 (460)
T COG5170          85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC  164 (460)
T ss_pred             HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc
Confidence            35688899976554  4556678999999976432100                           000            


Q ss_pred             ----ecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce---eeeeecCC-----CcceEEEEECCC-CCEEEEeecC
Q psy4391          66 ----SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK---CLKTLKGH-----SNYVFCCNFNPQ-SNLIVSGSFD  132 (231)
Q Consensus        66 ----~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~---~~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~d  132 (231)
                          ..|...+.++.+..|.+.++++ .+-.|.+|+++-..   .+..++.+     ...+++..|+|. .+.+...+..
T Consensus       165 rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk  243 (460)
T COG5170         165 RVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK  243 (460)
T ss_pred             eeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence                1233446778888888877765 56689999987432   12223333     234677888886 4567777888


Q ss_pred             CcEEEEECCCCce----eee------------ccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCc-eeeeeecC-
Q psy4391         133 ESVRIWDVRTGKC----LKT------------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLIDD-  194 (231)
Q Consensus       133 ~~i~v~d~~~~~~----~~~------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~-  194 (231)
                      |.|++-|++....    .+.            +..-...|+.+.|+++|+++++-. =-++++||....+ ++.++..+ 
T Consensus       244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~  322 (460)
T COG5170         244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHC  322 (460)
T ss_pred             CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHH
Confidence            9999999984321    000            111123578899999999988654 3579999987543 33433111 


Q ss_pred             ----------CCCCe---EEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         195 ----------DNPPV---SFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       195 ----------~~~~i---~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                                ....|   -.+.||-|.+.+++|+..+..-+|-..
T Consensus       323 ~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         323 DLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                      11112   236789899999999988887777543

>KOG1275|consensus

Probab=98.58  E-value=1.2e-06  Score=73.22  Aligned_cols=142  Identities=16%  Similarity=0.221  Sum_probs=108.6

Q ss_pred             CCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC---------CCcEEEEeCCCceeeeee
Q psy4391          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD---------DKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        37 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~g~i~~~d~~~~~~~~~~  107 (231)
                      .+++.+.+|...|+|.+-|..+.+....+..|.+.+.++  +-.|+.|++++-         |..|+|||++..+.+..+
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI  262 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI  262 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee--eccCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence            357888999999999999999889999999999888764  556889998875         446899999887766555


Q ss_pred             cCCCcceEEEEECCC-CCEEEEeecCCcEEEEECC---CC-ceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         108 KGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVR---TG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       108 ~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~---~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      ..+.++ ..+.|.|. ...++..+..|...+.|..   +. ..+..+......+..+.++++++.++.|..+|.|.+|.
T Consensus       263 ~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  263 QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            544433 34567775 4567788888999998833   22 11233334445689999999999999999999999996

>KOG1912|consensus

Probab=98.57  E-value=2.7e-06  Score=70.00  Aligned_cols=194  Identities=16%  Similarity=0.281  Sum_probs=141.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCC------------CEEEEecCCCcEEEE
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS------------RLLVSGSDDKTLKIW   96 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~~g~i~~~   96 (231)
                      .-.++.|+|.| +||.|+ ...|.+-|..+.+..+.+..|...|+.+.|.|..            -.||++...|.|.+|
T Consensus        17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~   94 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV   94 (1062)
T ss_pred             cccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence            35678898866 455544 4577888888888888888899999999997621            246788889999999


Q ss_pred             eCCCceeeeeecCCCcceEEEEECC---CC-CEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcC-CCCeEEEE
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNP---QS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSS  171 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  171 (231)
                      |...+..+..+..+.+.+.+++|-+   +. .+++.-.....+.+|+..+|+...+.........++.++| |.+.+..-
T Consensus        95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l  174 (1062)
T KOG1912|consen   95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL  174 (1062)
T ss_pred             EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence            9998887777887888888888855   33 4667777788999999999998888777667788899988 66777777


Q ss_pred             ecCCeEEEEeCCC-------CceeeeeecCCCC-------------------C------eEEEEECCCCCEEEEEeCCCe
Q psy4391         172 SYDGLCRIWDTAS-------GQCLKTLIDDDNP-------------------P------VSFVKFSPNGKYILAATLDNT  219 (231)
Q Consensus       172 ~~dg~i~v~d~~~-------~~~~~~~~~~~~~-------------------~------i~~~~~s~~g~~l~~~s~d~~  219 (231)
                      +..|.+.+-+.-.       ++..+ +...+..                   .      ...++|+|.-+..+.......
T Consensus       175 ~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre  253 (1062)
T KOG1912|consen  175 GSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE  253 (1062)
T ss_pred             ccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence            7788777665321       11111 1111100                   0      013567898888888888888


Q ss_pred             EEEEeC
Q psy4391         220 LKLWDS  225 (231)
Q Consensus       220 v~vwd~  225 (231)
                      +.|+|.
T Consensus       254 llv~dl  259 (1062)
T KOG1912|consen  254 LLVFDL  259 (1062)
T ss_pred             eEEEcc
Confidence            888885

>KOG2066|consensus

Probab=98.55  E-value=9.2e-06  Score=67.08  Aligned_cols=153  Identities=24%  Similarity=0.328  Sum_probs=104.5

Q ss_pred             ecccccceEEEEECCC-------------CCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCC-----CCEE
Q psy4391          23 LAGHTKAVSSVKFSPN-------------GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-----SRLL   84 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~-------------~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l   84 (231)
                      +..|.+.|.-..+.-+             |+++++|+.||.|.|-...+......+. ...++.+++++|+     .+.+
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~f  132 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQF  132 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhhe
Confidence            4456666665555444             9999999999999998887665544443 3457889999997     5678


Q ss_pred             EEecCCCcEEEEeCC---CceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCe-----
Q psy4391          85 VSGSDDKTLKIWELS---SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPV-----  156 (231)
Q Consensus        85 ~~~~~~g~i~~~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v-----  156 (231)
                      ++|+..| +.++.-.   ....+ .+....++|.++.|.  |++||=++.+| ++|||+.+++.+..++.....+     
T Consensus       133 v~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~f  207 (846)
T KOG2066|consen  133 VSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELF  207 (846)
T ss_pred             eecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccC
Confidence            8999888 7666532   11111 344556789999996  66888777666 8999999988777665433332     


Q ss_pred             -EEEEEcCCCCeEEEEecCCeEEEEeCC
Q psy4391         157 -SAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (231)
Q Consensus       157 -~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (231)
                       ..+.|.++.+ |+ .++..+|++..++
T Consensus       208 pphl~W~~~~~-LV-IGW~d~v~i~~I~  233 (846)
T KOG2066|consen  208 PPHLHWQDEDR-LV-IGWGDSVKICSIK  233 (846)
T ss_pred             CCceEecCCCe-EE-EecCCeEEEEEEe
Confidence             2466766544 33 3456677777766

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.55  E-value=2.1e-05  Score=64.45  Aligned_cols=183  Identities=13%  Similarity=0.097  Sum_probs=112.7

Q ss_pred             EEECCCCCEEE-EEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC---C-CcEEEEeCCCceeeeee
Q psy4391          33 VKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD---D-KTLKIWELSSGKCLKTL  107 (231)
Q Consensus        33 ~~~~~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~-g~i~~~d~~~~~~~~~~  107 (231)
                      +-+.|||+.+. .....+.+.+.|.++.+....+.-. .....+.++|+|+++++.+-   . ..+..-+..+......+
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            44667777653 3344567778887776655554432 24456789999998877752   2 23333332222111111


Q ss_pred             cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCC-----CceeeeccCCCCCeEEEEEcCCCCeEEEEe-cCCeEEEEe
Q psy4391         108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWD  181 (231)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~v~d  181 (231)
                      ....  +  ..+.++|++...  .+++|.++|.++     ...+..+.. ......+.++|||+++++++ .+.++.|+|
T Consensus       277 ni~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVID  349 (635)
T PRK02888        277 NIAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVID  349 (635)
T ss_pred             chHH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEE
Confidence            1100  0  023456776665  357899999988     344444443 34556789999999987665 478999999


Q ss_pred             CCCCce------------eeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         182 TASGQC------------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       182 ~~~~~~------------~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +.+.+.            ..+... ...| ...+|+++|.-..+--.|.+|..||.
T Consensus       350 v~k~k~~~~~~~~~~~~vvaevev-GlGP-LHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        350 VRKLDDLFDGKIKPRDAVVAEPEL-GLGP-LHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             ChhhhhhhhccCCccceEEEeecc-CCCc-ceEEECCCCCEEEeEeecceeEEEeh
Confidence            987552            222222 2233 34789999987777778999999995

>KOG4649|consensus

Probab=98.53  E-value=0.00011  Score=53.35  Aligned_cols=146  Identities=12%  Similarity=0.055  Sum_probs=95.2

Q ss_pred             ECCCCC-EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcc
Q psy4391          35 FSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY  113 (231)
Q Consensus        35 ~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~  113 (231)
                      ..+|.+ +++.|+..+.+.--|..+++...+..- ..++.+-+.- -|++++.|+..|.+++.+.++++....+......
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v   95 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV   95 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence            334444 566777777777778777766544321 1222222221 3678999999999999999999766655533322


Q ss_pred             eEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeC
Q psy4391         114 VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (231)
Q Consensus       114 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (231)
                      -......+++.++..|+.|++.+..|.++..++.+.+-..+...+-++.|-...|+.+...|.+.--..
T Consensus        96 k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~  164 (354)
T KOG4649|consen   96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTK  164 (354)
T ss_pred             ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEcc
Confidence            233456789999999999999999999999888887655544455566663333444444554443333

>KOG1645|consensus

Probab=98.52  E-value=1e-05  Score=61.81  Aligned_cols=78  Identities=21%  Similarity=0.317  Sum_probs=65.6

Q ss_pred             ecccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCC-EEEEecCCCcEEEEeCCC
Q psy4391          23 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~d~~~  100 (231)
                      +.+|...|..++|+|..+ ++..++.+..|.|.|+++.........+ ..+++++|+-+.. +|++|..+|.|.+||++.
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            456788899999999888 6778899999999999988877777766 6899999987654 677888899999999975


Q ss_pred             c
Q psy4391         101 G  101 (231)
Q Consensus       101 ~  101 (231)
                      .
T Consensus       268 ~  268 (463)
T KOG1645|consen  268 P  268 (463)
T ss_pred             C
Confidence            3

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.51  E-value=1.9e-06  Score=68.78  Aligned_cols=76  Identities=18%  Similarity=0.289  Sum_probs=63.2

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~  102 (231)
                      .....|.+++++|+.++++.|..||+|.+||...+...  .......+..++|+|+|..+++|+..|.+.+||+.-..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            46778999999999999999999999999998655322  22334567889999999999999999999999987543

>KOG3617|consensus

Probab=98.49  E-value=1.2e-05  Score=67.19  Aligned_cols=109  Identities=11%  Similarity=0.257  Sum_probs=86.0

Q ss_pred             EEEEECCCCCEEEEEe----CCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeee
Q psy4391          31 SSVKFSPNGEWLASSS----ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~----~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      +-..|+|...+++.++    ..|+|.||- ++|........ ...+.+++|+|..-.|+.+-.-|.+.+|...+.+.-..
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            3457999999888764    468899884 35554444332 33467799999887888888899999999887766555


Q ss_pred             ecCCCcceEEEEECCCCCEEEEeecCCcEEEEECC
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR  141 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  141 (231)
                      ...|...+..+.|+|+|+.++++..-|.+.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            66788889999999999999999999999999654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.47  E-value=5.6e-05  Score=60.25  Aligned_cols=176  Identities=13%  Similarity=0.015  Sum_probs=104.8

Q ss_pred             EEEEEeCCCcEEEeecCCCcEEEEEeccc--c-----cEEEEEECC--CCCEEEEecCCCcEEEEeCCCceeeeeecCCC
Q psy4391          41 WLASSSADKLIKIWGAYDGKFEKTISGHK--L-----GISDVAWSS--DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHS  111 (231)
Q Consensus        41 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--~-----~v~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~  111 (231)
                      .++.+..+|.+..++..+++.........  .     ....+.-+|  .+..++.++.+|.+..+|..+++.+-..... 
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-  285 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG-  285 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC-
Confidence            45556667777777777766443322100  0     001111122  2456777778899999999988765443211 


Q ss_pred             cceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC-CCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeee
Q psy4391         112 NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT  190 (231)
Q Consensus       112 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~  190 (231)
                       ....+.  ..+..++.++.++.+..+|..+++.+....... ....+..+  .+..++.++.+|.+..+|..+++.+.+
T Consensus       286 -~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~  360 (394)
T PRK11138        286 -SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ  360 (394)
T ss_pred             -CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence             111111  245677788889999999999998766543211 11222222  245678889999999999999987665


Q ss_pred             eecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         191 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       191 ~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      .............+  .+..|++++.||.|..++
T Consensus       361 ~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        361 QKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             EEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence            53322211111222  245788889999988775

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.44  E-value=0.00011  Score=58.89  Aligned_cols=140  Identities=23%  Similarity=0.254  Sum_probs=79.5

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeee
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      .-....+.++|+|+.++.++ +|.-.++.....+...  .   +.-.+++|.+.+ .+|+-..++.|.++.--+.+....
T Consensus        32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~--~---G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA--F---GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE--E---EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT--
T ss_pred             CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc--c---CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceE
Confidence            34578999999999998854 7787888754433322  1   223457899854 467777788899963222232223


Q ss_pred             ecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      ++... .+..+ |.  |.+|...+.+ .|.+||..+++.+..+...  +|..+.|++++++++..+.+ .+.+++
T Consensus       105 i~~~~-~~~~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  105 IKLPF-SVEKI-FG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             ---SS--EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             EcCCc-ccceE-Ec--CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            33221 12222 22  7777766554 7999999999999988753  48999999999999888755 455554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.44  E-value=8.6e-05  Score=60.98  Aligned_cols=104  Identities=11%  Similarity=0.137  Sum_probs=74.4

Q ss_pred             ECCCCCEEEEecCCCcEEEEeCCC-----ceeeeeecCCCcceEEEEECCCCCEEEEee-cCCcEEEEECCCCce-----
Q psy4391          77 WSSDSRLLVSGSDDKTLKIWELSS-----GKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKC-----  145 (231)
Q Consensus        77 ~~~~~~~l~~~~~~g~i~~~d~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~-----  145 (231)
                      +.++|++...  .++.|.+.|..+     .+....+... .....+.++|||+++++++ .+..+.|+|+.+.+.     
T Consensus       284 ~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        284 AVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             hhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            3457776655  356899999987     3455555533 4466789999999887765 488999999987542     


Q ss_pred             -------eeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCC
Q psy4391         146 -------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       146 -------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (231)
                             +.......+| ...+|+++|..+.+-.-|.+|..||+..
T Consensus       361 ~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        361 IKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence                   2333333333 4578999998777888899999999875

>KOG1645|consensus

Probab=98.40  E-value=5.7e-06  Score=63.14  Aligned_cols=93  Identities=22%  Similarity=0.311  Sum_probs=71.8

Q ss_pred             EEEeecCCCcEEEEEecccccEEEEEECCCCC-EEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCC-CEEEE
Q psy4391          51 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVS  128 (231)
Q Consensus        51 i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~  128 (231)
                      +++.+..+.+....+.++...|.+++|+|..+ .+..++.+..|++.|+++...+.....+ ..+++|+|+-+. ++|+.
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            44444444444444556666789999999776 6778899999999999998888777766 678899998765 67788


Q ss_pred             eecCCcEEEEECCCCc
Q psy4391         129 GSFDESVRIWDVRTGK  144 (231)
Q Consensus       129 ~~~d~~i~v~d~~~~~  144 (231)
                      |...|.|.+||++..+
T Consensus       254 Gl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eccCceEEEEEccCCC
Confidence            8899999999998654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.39  E-value=0.00015  Score=53.51  Aligned_cols=187  Identities=19%  Similarity=0.292  Sum_probs=108.8

Q ss_pred             EECCCCCEEEEEeCC-----CcEEEeecCCC-cEEEEEecccccEEEEEECCCCCEEEEecCC-------C---------
Q psy4391          34 KFSPNGEWLASSSAD-----KLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSRLLVSGSDD-------K---------   91 (231)
Q Consensus        34 ~~~~~~~~l~~~~~d-----g~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------g---------   91 (231)
                      .|||||.+|++...|     |.|=+||...+ ....++..|..+...+.|.+||+.++.+...       |         
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            589999999875443     67899998643 3455677888888999999999998876431       1         


Q ss_pred             --cEEEEeCCCceeeeee--c--CCCcceEEEEECCCCCEEEEeecCCc-----EEEEECCCCceeeecc-------CCC
Q psy4391          92 --TLKIWELSSGKCLKTL--K--GHSNYVFCCNFNPQSNLIVSGSFDES-----VRIWDVRTGKCLKTLP-------AHS  153 (231)
Q Consensus        92 --~i~~~d~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~v~d~~~~~~~~~~~-------~~~  153 (231)
                        .+.+.|..+++.+.+.  .  -+...+..++..++|+.++.+-..|.     .-|=-...++.++.+.       ...
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~a  279 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFA  279 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHH
Confidence              2333343344332221  1  12334666777777776655433221     0010111222222221       123


Q ss_pred             CCeEEEEEcCCCCeEEEEe-cCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         154 DPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       154 ~~v~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ..|-+++.+.+..+++..+ ..+...+||..++..+......+...   ++  +.+.-+++.+.+|++.++..
T Consensus       280 nYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaG---va--~~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         280 NYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAG---VA--AAKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             hhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccccccc---ce--eccCceEEecCCceEEeccc
Confidence            4567788876656655444 45678899999998765443333222   22  33344667777888887764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.39  E-value=0.00012  Score=58.45  Aligned_cols=180  Identities=12%  Similarity=0.113  Sum_probs=99.3

Q ss_pred             EEEEEeCCCcEEEeecCCCcEEEEEecccccEEE-EEECC--CCCEEEEecCCCcEEEEeCCCceeeeeecCCCc-----
Q psy4391          41 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISD-VAWSS--DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSN-----  112 (231)
Q Consensus        41 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~-~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~-----  112 (231)
                      .++.+..+|.+.-+|..+++.............. ..-+|  .+..++.+..+|.+..+|.++++..........     
T Consensus       162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~  241 (394)
T PRK11138        162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE  241 (394)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc
Confidence            3444555667777777777655544321100000 00011  123466677788888888888775443321100     


Q ss_pred             --ceEEEEECC--CCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCcee
Q psy4391         113 --YVFCCNFNP--QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL  188 (231)
Q Consensus       113 --~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  188 (231)
                        ....+..+|  .+..++.++.++.+..+|..+|+.+.......  ...+.  ..+..++.++.+|.+..+|..+++.+
T Consensus       242 ~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        242 IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFA--VDGGRIYLVDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             hhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcE--EECCEEEEEcCCCeEEEEECCCCcEE
Confidence              000111122  24567777889999999999998776643221  11122  24567778888999999999988753


Q ss_pred             eeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       189 ~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      =...............  .+..|++++.||.|...|..
T Consensus       318 W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~  353 (394)
T PRK11138        318 WSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRE  353 (394)
T ss_pred             EcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECC
Confidence            2211111111111111  24567778888888888763

>KOG4640|consensus

Probab=98.37  E-value=3.9e-06  Score=67.50  Aligned_cols=94  Identities=20%  Similarity=0.279  Sum_probs=76.6

Q ss_pred             cceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeE-EEEEcCCCCeEEEEecCCeEEEEeCCCCceeee
Q psy4391         112 NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT  190 (231)
Q Consensus       112 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~  190 (231)
                      ..+..+.|+|.-.++|++..+|.+-+.-++ .+.+..+..+...++ +++|.|||+.+|+|-.||+|++.|.+++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            346678999999999999999999888887 667788876666666 999999999999999999999999999887766


Q ss_pred             eecCCCCCeEEEEECC
Q psy4391         191 LIDDDNPPVSFVKFSP  206 (231)
Q Consensus       191 ~~~~~~~~i~~~~~s~  206 (231)
                      ........|..+.|++
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            4333344566677763

>KOG2114|consensus

Probab=98.37  E-value=3.5e-05  Score=64.30  Aligned_cols=150  Identities=20%  Similarity=0.312  Sum_probs=101.3

Q ss_pred             EECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcc-eEEEEECCCCCEEEEeecCCc-----EEEEECCCC------
Q psy4391          76 AWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDES-----VRIWDVRTG------  143 (231)
Q Consensus        76 ~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~-----i~v~d~~~~------  143 (231)
                      +|++.+..++.|+.+|.|.+++-. .+..+.++.+... +..+....+.++|++.+.|+.     +++||++.-      
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            678889999999999999888743 2333556655544 444433334467777766554     899998643      


Q ss_pred             ceee--ec-----cCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe--CC-CCceeeeeecCCCCCeEEEEECCCCCEEEE
Q psy4391         144 KCLK--TL-----PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD--TA-SGQCLKTLIDDDNPPVSFVKFSPNGKYILA  213 (231)
Q Consensus       144 ~~~~--~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d--~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  213 (231)
                      +++.  .+     ...+.++.+++.+.+-+.+|+|-.+|.|..+.  +. ..............+|+.+++..+++.++.
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF  188 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF  188 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence            2221  11     12356788999999989999999999998883  22 222233344556778999999999987444


Q ss_pred             EeCCCeEEEEeCC
Q psy4391         214 ATLDNTLKLWDSY  226 (231)
Q Consensus       214 ~s~d~~v~vwd~~  226 (231)
                      ...-.+|.+|...
T Consensus       189 v~Tt~~V~~y~l~  201 (933)
T KOG2114|consen  189 VATTEQVMLYSLS  201 (933)
T ss_pred             EEecceeEEEEec
Confidence            4445788888753

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.37  E-value=0.00014  Score=60.56  Aligned_cols=186  Identities=15%  Similarity=0.200  Sum_probs=102.7

Q ss_pred             cceEEEEECCCCCEEEEEe------CCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC-----------
Q psy4391          28 KAVSSVKFSPNGEWLASSS------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD-----------   90 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~------~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----------   90 (231)
                      ..+...+++|+|+.++...      .|..-.+|-...+.....+.... ......|+|+|+.+++....           
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC-CCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            3577899999999887644      24444455432222223333222 37778999998877766432           


Q ss_pred             -CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEE---EECCCCce-e---eeccC-CCCCeEEEEE
Q psy4391          91 -KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI---WDVRTGKC-L---KTLPA-HSDPVSAVHF  161 (231)
Q Consensus        91 -g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v---~d~~~~~~-~---~~~~~-~~~~v~~~~~  161 (231)
                       +.+.+.+++.++...   .....+..+.|+|||..++... ++.|++   -....|.. +   ..+.. -...+..+.|
T Consensus       429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W  504 (591)
T PRK13616        429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW  504 (591)
T ss_pred             CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence             233333444333222   2234688999999999888766 467766   44444431 1   11222 2234578899


Q ss_pred             cCCCCeEEEEecCCeEEEE--eCCCCceeeeeec-CCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q psy4391         162 NRDGSLIVSSSYDGLCRIW--DTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (231)
Q Consensus       162 ~~~~~~l~~~~~dg~i~v~--d~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~~~s~d~~v~v  222 (231)
                      .+++.++ ++..++.-.+|  ++..... ..+.. ....++..++-+++  -+++.+.++.+.+
T Consensus       505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l  564 (591)
T PRK13616        505 RTGDSLV-VGRSDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL  564 (591)
T ss_pred             ecCCEEE-EEecCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence            9988854 55555544444  4443221 11111 12345666776663  4566666665543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.36  E-value=0.00077  Score=53.92  Aligned_cols=183  Identities=21%  Similarity=0.238  Sum_probs=97.5

Q ss_pred             EEECCCCCEEEEEeCC----------C-cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          33 VKFSPNGEWLASSSAD----------K-LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        33 ~~~~~~~~~l~~~~~d----------g-~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      ++.+|.|-.||....+          . .|+||+.. |+....+.-..+.+..+.|+.+. .|++...+|.+++||+...
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~  111 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE  111 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc
Confidence            4455655555554322          1 48888874 55666665445789999998864 5667779999999998643


Q ss_pred             eeeeeec--CCCcceE-----EEEECCCCCEEEEeecCCcEEEEECCCCc-eeeeccC----------CCCCeEEEEEcC
Q psy4391         102 KCLKTLK--GHSNYVF-----CCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPA----------HSDPVSAVHFNR  163 (231)
Q Consensus       102 ~~~~~~~--~~~~~v~-----~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~----------~~~~v~~~~~~~  163 (231)
                      . ...+.  .....+.     ...+..+|-.+.  ..++.+.+..-.... ..+.+..          .........++.
T Consensus       112 ~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~  188 (410)
T PF04841_consen  112 F-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS  188 (410)
T ss_pred             e-eechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence            3 11111  0111121     122233443333  334445444322211 1111110          000000122344


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +....+....++.+.+.+-...+.   +  ....++..+++||+|+++|.-+.+|.+.|...
T Consensus       189 ~~~~~i~~~~g~~i~~i~~~~~~~---i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss  245 (410)
T PF04841_consen  189 DRVVEILLANGETIYIIDENSFKQ---I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS  245 (410)
T ss_pred             CcceEEEEecCCEEEEEEcccccc---c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence            444445555555555443322111   1  12357889999999999999999999988874

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.34  E-value=9.8e-05  Score=57.95  Aligned_cols=186  Identities=18%  Similarity=0.277  Sum_probs=101.0

Q ss_pred             CCCCCEEEEEe---------CCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeee
Q psy4391          36 SPNGEWLASSS---------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        36 ~~~~~~l~~~~---------~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      |||+++++...         ..+...+||+.+++...... ....+....|+|+|+.++... ++.|.+++..++...+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            57888766532         23567888988765443332 255678899999999988875 57899999877654433


Q ss_pred             ecCC-----------------CcceEEEEECCCCCEEEEeecC-CcEE--------------------------------
Q psy4391         107 LKGH-----------------SNYVFCCNFNPQSNLIVSGSFD-ESVR--------------------------------  136 (231)
Q Consensus       107 ~~~~-----------------~~~v~~~~~~~~~~~l~~~~~d-~~i~--------------------------------  136 (231)
                      ....                 -+.-..+.|+||++.|+....| ..++                                
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence            2211                 1112357799999988876433 2222                                


Q ss_pred             ---EEECCCCceeee-----ccCCCCCeEEEEEcCCCCeEEEEecC-----CeEEEEeCCCCceeeeeecCCCCCe---E
Q psy4391         137 ---IWDVRTGKCLKT-----LPAHSDPVSAVHFNRDGSLIVSSSYD-----GLCRIWDTASGQCLKTLIDDDNPPV---S  200 (231)
Q Consensus       137 ---v~d~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~~i---~  200 (231)
                         ++|+.+++....     .......+..+.|.++++.++..-.+     ..+.++|..+++............+   .
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence               233333322110     01123356778898888844443322     2466778877654333322222222   2


Q ss_pred             EEEEC-CCC-CEEEEEeCCCeEEEE
Q psy4391         201 FVKFS-PNG-KYILAATLDNTLKLW  223 (231)
Q Consensus       201 ~~~~s-~~g-~~l~~~s~d~~v~vw  223 (231)
                      ...+. +++ .+|.....||.-+||
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly  263 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLY  263 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEE
Confidence            34443 555 455555567754444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.32  E-value=5.6e-05  Score=64.06  Aligned_cols=140  Identities=24%  Similarity=0.323  Sum_probs=97.2

Q ss_pred             CCEEEEe-cCCCcEEEEeCCCceeeeeecCCCcc-eEEEEECCC-------CCEEEEeecCCcEEEEECCCCc--eeee-
Q psy4391          81 SRLLVSG-SDDKTLKIWELSSGKCLKTLKGHSNY-VFCCNFNPQ-------SNLIVSGSFDESVRIWDVRTGK--CLKT-  148 (231)
Q Consensus        81 ~~~l~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~-------~~~l~~~~~d~~i~v~d~~~~~--~~~~-  148 (231)
                      .++|+.. .....|+-.|++.|+.+..++.+... +..  +.|+       ....+.|-.+..+..||.|...  .+.. 
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence            3444433 34568888999999999999876643 443  4442       3456778888899999998643  2211 


Q ss_pred             c--cCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         149 L--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       149 ~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .  -......+|++-+.+| +||+|+.+|.|++||- .++.-++.+..-+.||..|..+.||+||++.+ +..+.++++
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            0  0123346677766655 6899999999999994 34434445555578999999999999998887 678888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1008|consensus

Probab=98.28  E-value=3.6e-07  Score=73.39  Aligned_cols=197  Identities=20%  Similarity=0.297  Sum_probs=123.6

Q ss_pred             ccceEEEEECCCCC--EEEEEeCCCcEEEeecCCCcE--EEEEecccccEEEEEECC-CCCEEEEecC----CCcEEEEe
Q psy4391          27 TKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSS-DSRLLVSGSD----DKTLKIWE   97 (231)
Q Consensus        27 ~~~i~~~~~~~~~~--~l~~~~~dg~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----~g~i~~~d   97 (231)
                      ...+.|+++.-+.+  .++.|..+|.|-+-.......  .....++...+++++|.+ |.+.||+|-.    |..+.+||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            44577777766444  678899999998876654332  233456667789999988 4556666533    45789999


Q ss_pred             CCCc--eeee--eecC-CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcC-CCCeEEEE
Q psy4391          98 LSSG--KCLK--TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSS  171 (231)
Q Consensus        98 ~~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  171 (231)
                      +.++  .+..  .+.+ ......+++|..+.+++.+|...+.++++|++... ..........+..+.++| .+.++++-
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceecc
Confidence            9865  1111  1111 22334467788888899999999999999998332 122222234556677777 66777655


Q ss_pred             ecCCeEEEEe-CCCCcee-eeeecCC---CCCeEEEEECCCCC-EEEEEeC-CCeEEEEeC
Q psy4391         172 SYDGLCRIWD-TASGQCL-KTLIDDD---NPPVSFVKFSPNGK-YILAATL-DNTLKLWDS  225 (231)
Q Consensus       172 ~~dg~i~v~d-~~~~~~~-~~~~~~~---~~~i~~~~~s~~g~-~l~~~s~-d~~v~vwd~  225 (231)
                      . ||.|.+|| .++-+.. ..+....   ...+..++|.|... .+++.+. .+.|+.||.
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            4 99999999 4433222 2221111   12367789988654 3444444 468888885

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.26  E-value=0.00043  Score=55.62  Aligned_cols=141  Identities=13%  Similarity=0.217  Sum_probs=78.5

Q ss_pred             ccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceee
Q psy4391          68 HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK  147 (231)
Q Consensus        68 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  147 (231)
                      .......+.++|+|+++++ +.+|...+|.....+....     +.-....|.+. +.+|+-...+.|.++.--.....+
T Consensus        31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-
T ss_pred             CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccccce
Confidence            3345678999999999888 5677777887544333221     12234568874 456666668889986322222222


Q ss_pred             eccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         148 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       148 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      .+... ..+..+..   |.+|+..+.+ .|.+||..+++.++++..   .++..+.|+++|++++..+.+ .+.|++
T Consensus       104 ~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  104 SIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             ----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             EEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            33321 23444433   7877777644 899999999988877642   247889999999999999854 666665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621|consensus

Probab=98.26  E-value=3.6e-05  Score=62.86  Aligned_cols=117  Identities=16%  Similarity=0.177  Sum_probs=87.5

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe-cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      |...|.=-+++..+++++.|+..|.+++|+-..+.....-. +....+.....+++..++|+|+..|.|.++.+..+.+-
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            34455555677789999999999999999876554433322 23344556678888888999999999999987653221


Q ss_pred             e--ee----cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCC
Q psy4391         105 K--TL----KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT  142 (231)
Q Consensus       105 ~--~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  142 (231)
                      .  .+    +.|...|++++|++++..+++|...|.|.+-.+..
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            1  11    23567899999999999999999999999887776

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.23  E-value=0.0016  Score=52.36  Aligned_cols=196  Identities=19%  Similarity=0.236  Sum_probs=104.9

Q ss_pred             ceEEEEECCCCCEEEEE-eCCC----cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC-----------Cc
Q psy4391          29 AVSSVKFSPNGEWLASS-SADK----LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD-----------KT   92 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~-~~dg----~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----------g~   92 (231)
                      .+....++|+|+++|.+ +..|    .++++|+.+++........ .....+.|.++++.++....+           ..
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            44468899999988754 3334    5999999998665432111 112238999998877655432           23


Q ss_pred             EEEEeCCCcee--eeeecCCCc-c-eEEEEECCCCCEEEEeecC----CcEEEEECCCC----ceeeeccCCCCCe-EEE
Q psy4391          93 LKIWELSSGKC--LKTLKGHSN-Y-VFCCNFNPQSNLIVSGSFD----ESVRIWDVRTG----KCLKTLPAHSDPV-SAV  159 (231)
Q Consensus        93 i~~~d~~~~~~--~~~~~~~~~-~-v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~----~~~~~~~~~~~~v-~~~  159 (231)
                      |+.|.+.+...  ...+..... . ...+..++++++++.....    ..+.+.|+..+    .....+......+ ..+
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v  283 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV  283 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence            77788776432  233433332 2 5678899999988765432    34788888764    2233333323333 333


Q ss_pred             EEcCCCCeEEEEe---cCCeEEEEeCCCCce--eeeeecCCCCCeEEEEECCCCCEEEEEeC-CC--eEEEEeCC
Q psy4391         160 HFNRDGSLIVSSS---YDGLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPNGKYILAATL-DN--TLKLWDSY  226 (231)
Q Consensus       160 ~~~~~~~~l~~~~---~dg~i~v~d~~~~~~--~~~~~~~~~~~i~~~~~s~~g~~l~~~s~-d~--~v~vwd~~  226 (231)
                      ... .+.+++...   ..+.|...++.....  .......+...+....+...+.+|+.... ++  +|+++|..
T Consensus       284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence            333 344444332   235677777776542  22122222222222334444555555444 43  77777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.20  E-value=0.00019  Score=59.77  Aligned_cols=146  Identities=14%  Similarity=0.139  Sum_probs=85.8

Q ss_pred             cEEEEEECCCCCEEEEec------CCC--cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecC----------
Q psy4391          71 GISDVAWSSDSRLLVSGS------DDK--TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----------  132 (231)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~------~~g--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------  132 (231)
                      .+.+.+.+|+|+.++...      .+.  .|.+++... .. ..+... .......|+|+|..+++....          
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            567889999999887654      233  555556532 22 223222 225677899998877766432          


Q ss_pred             --CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEE---EeCCCCc-ee---eeeecCCCCCeEEEE
Q psy4391         133 --ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI---WDTASGQ-CL---KTLIDDDNPPVSFVK  203 (231)
Q Consensus       133 --~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v---~d~~~~~-~~---~~~~~~~~~~i~~~~  203 (231)
                        +.+.+.+++.+....   ...+.|..+.|+|||..++... +|.|.+   -....++ .+   ..+.......+..+.
T Consensus       428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence              233333444333211   2245799999999999888765 577776   4444443 11   112222222346788


Q ss_pred             ECCCCCEEEEEeCCCeEEEEe
Q psy4391         204 FSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       204 ~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      |..++.++ ++..++...+|.
T Consensus       504 W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        504 WRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             EecCCEEE-EEecCCCCceEE
Confidence            99999855 555555555554

>KOG4649|consensus

Probab=98.19  E-value=0.00095  Score=48.75  Aligned_cols=103  Identities=11%  Similarity=0.066  Sum_probs=72.6

Q ss_pred             CCEEEEEeCCCcEEEeecCCCcEEEEEeccc-ccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEE
Q psy4391          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC  117 (231)
Q Consensus        39 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~  117 (231)
                      |++++.|...|.+++.+..++.....+.... ..+ .....+++..|..++.|++.+..|.++..++...+.......+.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP  141 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP  141 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence            5667888999999999999887666654322 222 23567889999999999999999999988888777655555555


Q ss_pred             EECCCCCEEEEeecCCcEEEEECCC
Q psy4391         118 NFNPQSNLIVSGSFDESVRIWDVRT  142 (231)
Q Consensus       118 ~~~~~~~~l~~~~~d~~i~v~d~~~  142 (231)
                      +.+|-...|+.+...|.+.-...+.
T Consensus       142 ~i~~g~~sly~a~t~G~vlavt~~~  166 (354)
T KOG4649|consen  142 VIAPGDGSLYAAITAGAVLAVTKNP  166 (354)
T ss_pred             eecCCCceEEEEeccceEEEEccCC
Confidence            6677444455555556554444443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.0021  Score=51.09  Aligned_cols=195  Identities=16%  Similarity=0.250  Sum_probs=123.6

Q ss_pred             ceEEEEECCCCCEEEEEeC-CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCceeeee
Q psy4391          29 AVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      ....+...+++..+..... ...+...+...................++.++.+..+ +....+..|.+.|..+.+....
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            4556778888865544332 2234444433111111111111234566788888755 4444568999999877666655


Q ss_pred             ecCCCcceEEEEECCCCCEEEEeec---CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe-cCCeEEEEeC
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGSF---DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDT  182 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~v~d~  182 (231)
                      ..... ....++++|+++.+..+..   ++.+.+.|..+.+..........+ ..++++|+|..+++.. .++.+.++|.
T Consensus       112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~  189 (381)
T COG3391         112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT  189 (381)
T ss_pred             eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence            54332 4567899999988777755   688999999988887775554445 7899999999766555 6789999997


Q ss_pred             CCCceee-e---eecCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCC
Q psy4391         183 ASGQCLK-T---LIDDDNPPVSFVKFSPNGKYILAATLD---NTLKLWDSY  226 (231)
Q Consensus       183 ~~~~~~~-~---~~~~~~~~i~~~~~s~~g~~l~~~s~d---~~v~vwd~~  226 (231)
                      ......+ .   ....... -..++++|+|.++.+.-..   +.+.+.|..
T Consensus       190 ~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~  239 (381)
T COG3391         190 SGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSGSNNVLKIDTA  239 (381)
T ss_pred             CCcceeccccccccccCCC-CceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence            7665442 1   0111112 2457899999977665543   488887753

>KOG3621|consensus

Probab=98.15  E-value=3.2e-05  Score=63.20  Aligned_cols=110  Identities=15%  Similarity=0.231  Sum_probs=85.8

Q ss_pred             EEECCCCCEEEEecCCCcEEEEeCCCceeeee-ecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceee-----e
Q psy4391          75 VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT-LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK-----T  148 (231)
Q Consensus        75 ~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-----~  148 (231)
                      -+++..+++++.|+..|.+++|+-..++.... ..+....+..+.++++..++|.|+..|.|.++-++.+..-.     .
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~  118 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP  118 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence            35667789999999999999999776653322 22244566778889999999999999999999887644211     1


Q ss_pred             -ccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCC
Q psy4391         149 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       149 -~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (231)
                       -..|...|++++|++++..+++|...|.|.+..+..
T Consensus       119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence             123677899999999999999999999999887766

>KOG4640|consensus

Probab=98.12  E-value=2.9e-05  Score=62.71  Aligned_cols=91  Identities=21%  Similarity=0.332  Sum_probs=74.2

Q ss_pred             cEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceE-EEEECCCCCEEEEeecCCcEEEEECCCCceeeec
Q psy4391          71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL  149 (231)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  149 (231)
                      .+.-+.|+|.-..||.+..+|.+.++.+. .+.+..+..+...++ +++|.|||++||.|-.||+|++.|..++..+...
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            46678999999999999999999999887 666777775666666 9999999999999999999999999998776653


Q ss_pred             c-CCCCCeEEEEEc
Q psy4391         150 P-AHSDPVSAVHFN  162 (231)
Q Consensus       150 ~-~~~~~v~~~~~~  162 (231)
                      . ....+|.++-|+
T Consensus       101 ~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  101 LFSVETDISKGIWD  114 (665)
T ss_pred             ccccccchheeecc
Confidence            2 224567777775

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.01  E-value=0.0035  Score=48.02  Aligned_cols=182  Identities=13%  Similarity=0.167  Sum_probs=105.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec-----ccccEEEEEECCCCCEEEEecC-----------CCcE
Q psy4391          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-----HKLGISDVAWSSDSRLLVSGSD-----------DKTL   93 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~-----------~g~i   93 (231)
                      +.++..-..+..|+++.  ..+.+++.+++.....+..     ......+....|+|.+.++...           -|.+
T Consensus        68 ~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l  145 (307)
T COG3386          68 FSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL  145 (307)
T ss_pred             cccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence            34444433444444432  3344555554444233221     1234567788999987766544           1334


Q ss_pred             EEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeec-CCcEEEEECCC--Cce-----eeeccCCCCCeEEEEEcCCC
Q psy4391          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRT--GKC-----LKTLPAHSDPVSAVHFNRDG  165 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~--~~~-----~~~~~~~~~~v~~~~~~~~~  165 (231)
                      +.++. .+...+.+..+-.....++|+||++.++.... .+.|+-|++..  +..     ...+....+..-.++...+|
T Consensus       146 yr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG  224 (307)
T COG3386         146 YRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG  224 (307)
T ss_pred             EEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence            44443 34555555544445567999999987777654 57888887752  211     11122234555667778888


Q ss_pred             CeEEEEecCC-eEEEEeCCCCceeeeeecCCCCCeEEEEE-CCCCCEEEEEeC
Q psy4391         166 SLIVSSSYDG-LCRIWDTASGQCLKTLIDDDNPPVSFVKF-SPNGKYILAATL  216 (231)
Q Consensus       166 ~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~~i~~~~~-s~~g~~l~~~s~  216 (231)
                      .+.+++..+| .|..|+.. ++.+..+..... .+++++| .|+.+.|++.+.
T Consensus       225 ~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         225 NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CEEEecccCCceEEEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEec
Confidence            8776555554 89999998 887777765543 3455555 566676666554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.01  E-value=0.0044  Score=49.23  Aligned_cols=195  Identities=15%  Similarity=0.225  Sum_probs=108.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEE-------------------------------------------EEE
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------------------------------------------KTI   65 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~-------------------------------------------~~~   65 (231)
                      .|+.+.|+++...|++|...|.|.+|.....+..                                           ..+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5788999998888899999999888753211000                                           011


Q ss_pred             ecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee--cC------CCcceEEEEEC-----CCC---CEEEEe
Q psy4391          66 SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL--KG------HSNYVFCCNFN-----PQS---NLIVSG  129 (231)
Q Consensus        66 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~--~~------~~~~v~~~~~~-----~~~---~~l~~~  129 (231)
                      ....++|++++.+ |-.+++.|.++|.+.+.|++....+..-  ..      ....+.++.|.     .|+   -.+++|
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            1124567788876 4458999999999999999876654431  11      23456666664     233   468889


Q ss_pred             ecCCcEEEEECC--C-Cce----eeeccCCCCCeEEEE-EcCC-C-------------------CeEEEEecCCeEEEEe
Q psy4391         130 SFDESVRIWDVR--T-GKC----LKTLPAHSDPVSAVH-FNRD-G-------------------SLIVSSSYDGLCRIWD  181 (231)
Q Consensus       130 ~~d~~i~v~d~~--~-~~~----~~~~~~~~~~v~~~~-~~~~-~-------------------~~l~~~~~dg~i~v~d  181 (231)
                      ...|.+.+|.+.  . +..    ......+.+++..+. ++.+ |                   .-++....+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            999999999764  1 111    111123445554443 3211 1                   1244445578899999


Q ss_pred             CCCCceeeeeecCCCCCeEEEEE-----CCCCCEEEEEeCCCeEEEEeC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKF-----SPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~-----s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +.+.+...+.. ........+.+     ...+..|++-..+|.|++|..
T Consensus       242 ~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL  289 (395)
T PF08596_consen  242 PPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL  289 (395)
T ss_dssp             TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred             CCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence            98877666554 22122223334     235678888889999999963

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=98.00  E-value=0.0035  Score=47.76  Aligned_cols=159  Identities=14%  Similarity=0.202  Sum_probs=83.4

Q ss_pred             EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEEC
Q psy4391          61 FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV  140 (231)
Q Consensus        61 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  140 (231)
                      ...........+..+.-+++|++++++.....+.-||.-...-...-+.....+..+.|.|++.+.+.+ ..|.|++=+.
T Consensus       136 W~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~  214 (302)
T PF14870_consen  136 WQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD  214 (302)
T ss_dssp             EEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred             eeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence            344444455678888889999988888766666677754322222222335678899999998877754 8888888772


Q ss_pred             C-CCceee----eccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCC--CCCeEEEEECCCCCEEEE
Q psy4391         141 R-TGKCLK----TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILA  213 (231)
Q Consensus       141 ~-~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~~  213 (231)
                      . ....-.    ........+..+++.+++...++|+. |.+ +.....++.-++.....  ...+..+.|.++.+-++.
T Consensus       215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l  292 (302)
T PF14870_consen  215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL  292 (302)
T ss_dssp             TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred             CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence            2 111111    11122334788999998887776664 443 34556666555543322  334667777666565555


Q ss_pred             EeCCCeEEEE
Q psy4391         214 ATLDNTLKLW  223 (231)
Q Consensus       214 ~s~d~~v~vw  223 (231)
                      | .+|.+.-|
T Consensus       293 G-~~G~ll~~  301 (302)
T PF14870_consen  293 G-QDGVLLRY  301 (302)
T ss_dssp             --STTEEEEE
T ss_pred             C-CCcEEEEe
Confidence            5 58888766

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.00  E-value=0.0049  Score=49.40  Aligned_cols=155  Identities=10%  Similarity=0.153  Sum_probs=79.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe--cccccEEEE-----EECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDV-----AWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~v~~~-----~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      +.|.++.|+.+.++++. ..||.+++|+..... ...+.  .....|...     .+..+|  ++.-..++.+.+.+--.
T Consensus        81 ~~iv~~~wt~~e~LvvV-~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~  156 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVV-QSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNID  156 (410)
T ss_pred             CCEEEEEECCCCeEEEE-EcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCcc
Confidence            78999999886555544 689999999986333 11111  011122222     222244  33333444444433222


Q ss_pred             ce-eeeeec---C-------CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEE
Q psy4391         101 GK-CLKTLK---G-------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus       101 ~~-~~~~~~---~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  169 (231)
                      .. ..+.+.   .       .........++.+....+....++.+.+.+-...+   .+. ..+++..|++||+++++|
T Consensus       157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~---~i~-~~~~i~~iavSpng~~iA  232 (410)
T PF04841_consen  157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK---QID-SDGPIIKIAVSPNGKFIA  232 (410)
T ss_pred             ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc---ccc-CCCCeEEEEECCCCCEEE
Confidence            11 111111   0       00000001233344444444445555544432211   122 246899999999999999


Q ss_pred             EEecCCeEEEEeCCCCceeee
Q psy4391         170 SSSYDGLCRIWDTASGQCLKT  190 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~  190 (231)
                      .-..+|.+.+....-.+...+
T Consensus       233 l~t~~g~l~v~ssDf~~~~~e  253 (410)
T PF04841_consen  233 LFTDSGNLWVVSSDFSEKLCE  253 (410)
T ss_pred             EEECCCCEEEEECcccceeEE
Confidence            999899998886554443333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.00  E-value=0.004  Score=48.25  Aligned_cols=190  Identities=20%  Similarity=0.204  Sum_probs=105.6

Q ss_pred             ceEEEEECCC----CCEEEEEeC---------C-CcEEEeecCCC----cEEEEE--ecccccEEEEEECCCCCEEEEec
Q psy4391          29 AVSSVKFSPN----GEWLASSSA---------D-KLIKIWGAYDG----KFEKTI--SGHKLGISDVAWSSDSRLLVSGS   88 (231)
Q Consensus        29 ~i~~~~~~~~----~~~l~~~~~---------d-g~i~i~~~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~   88 (231)
                      .+..+.+..+    ..+|+.|+.         . |.+.++++...    .....+  ....++|.+++-. ++. ++++.
T Consensus        28 s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~  105 (321)
T PF03178_consen   28 SLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV  105 (321)
T ss_dssp             EEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE
T ss_pred             EEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee
Confidence            3444555443    457776643         2 88999998773    122222  2235678877655 344 44443


Q ss_pred             CCCcEEEEeCCCce-eeeeecC-CCcceEEEEECCCCCEEEEeecCCcEEEEECCC-Cceeeecc--CCCCCeEEEEEcC
Q psy4391          89 DDKTLKIWELSSGK-CLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-GKCLKTLP--AHSDPVSAVHFNR  163 (231)
Q Consensus        89 ~~g~i~~~d~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~--~~~~~v~~~~~~~  163 (231)
                       ++.|.+|++...+ ....... ....+.++..  .+++++.|.....+.++..+. ...+..+.  .....++++.+-+
T Consensus       106 -g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~  182 (321)
T PF03178_consen  106 -GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV  182 (321)
T ss_dssp             -TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-
T ss_pred             -cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec
Confidence             4789999998766 3332221 1224444444  466999999888888774443 22233322  2234578888886


Q ss_pred             CCCeEEEEecCCeEEEEeCCC-------C--ceeeeeecCCCCCeEEE---EECC--CC------CEEEEEeCCCeEEEE
Q psy4391         164 DGSLIVSSSYDGLCRIWDTAS-------G--QCLKTLIDDDNPPVSFV---KFSP--NG------KYILAATLDNTLKLW  223 (231)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~-------~--~~~~~~~~~~~~~i~~~---~~s~--~g------~~l~~~s~d~~v~vw  223 (231)
                      +++.++++..+|.+.++....       +  +.......+-+..++.+   .+.|  .+      ..++.++.+|.|-+.
T Consensus       183 d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  183 DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            667899999999999886542       1  12222222334456665   4444  22      248888889988744

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.97  E-value=0.0013  Score=41.70  Aligned_cols=100  Identities=16%  Similarity=0.202  Sum_probs=64.0

Q ss_pred             eEEEEE---CCCCC-EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee
Q psy4391          30 VSSVKF---SPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        30 i~~~~~---~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      |+++++   ..+|+ .|++|+.|..|++|+-+  ....++.. ...+..++-... ..++.+-.+|+|-+|+-..  .+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence            445554   44544 78899999999999854  44555554 346777766655 5688899999999998643  233


Q ss_pred             eecCCCcceEEEEE-CC--CC-CEEEEeecCCcEE
Q psy4391         106 TLKGHSNYVFCCNF-NP--QS-NLIVSGSFDESVR  136 (231)
Q Consensus       106 ~~~~~~~~v~~~~~-~~--~~-~~l~~~~~d~~i~  136 (231)
                      .++.... +.++.+ +.  +| ..|++|-.+|.|-
T Consensus        76 RiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3333333 344433 32  33 3688888888774

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.95  E-value=0.0031  Score=48.88  Aligned_cols=174  Identities=14%  Similarity=0.116  Sum_probs=95.3

Q ss_pred             CcEEEeecCCCcEEEEEec-ccccEEE---EEECCC----CCEEEEecC----------CCcEEEEeCCCc----eeeee
Q psy4391          49 KLIKIWGAYDGKFEKTISG-HKLGISD---VAWSSD----SRLLVSGSD----------DKTLKIWELSSG----KCLKT  106 (231)
Q Consensus        49 g~i~i~~~~~~~~~~~~~~-~~~~v~~---~~~~~~----~~~l~~~~~----------~g~i~~~d~~~~----~~~~~  106 (231)
                      +.|++.|..+......+.- ....+.+   +.+..+    ..++++|..          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3567777766655444321 1122333   333332    356666542          288999999873    11221


Q ss_pred             e--cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc-eeeeccC-CCCCeEEEEEcCCCCeEEEEecCCeEEEEeC
Q psy4391         107 L--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (231)
Q Consensus       107 ~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (231)
                      +  ....+.|.++.-- .+. ++.+. ++.|.+|++...+ ....-.. ....+.++...  +.++++|.....+.++..
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence            1  1224567766544 333 44333 4789999998777 3322211 12355555544  568888887777776643


Q ss_pred             CC-Cceeeeee-cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         183 AS-GQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       183 ~~-~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .. .+.+..+. ......+.++.+-++++.++++..+|.+.++...|
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            32 22222222 22334466777765667999999999999998765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>smart00320 WD40 WD40 repeats

Probab=97.95  E-value=4.5e-05  Score=38.02  Aligned_cols=36  Identities=56%  Similarity=0.872  Sum_probs=31.6

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEee
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG   55 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~   55 (231)
                      ...+..|...|.++.|.++++.+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345567888999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.93  E-value=0.0061  Score=48.19  Aligned_cols=193  Identities=15%  Similarity=0.256  Sum_probs=92.7

Q ss_pred             CCCEEEEEe-CCCcEEEeecCC----CcEEEEEec---c-c---ccEEEEEECCCCCEEEEecC------CCcEEEEeCC
Q psy4391          38 NGEWLASSS-ADKLIKIWGAYD----GKFEKTISG---H-K---LGISDVAWSSDSRLLVSGSD------DKTLKIWELS   99 (231)
Q Consensus        38 ~~~~l~~~~-~dg~i~i~~~~~----~~~~~~~~~---~-~---~~v~~~~~~~~~~~l~~~~~------~g~i~~~d~~   99 (231)
                      +.++|+..+ ..+.|+|.|+.+    .+..+.+..   + +   .....+.--|+|+.++++-.      -|-+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345666544 778999999863    233444432   1 1   12333444578888876522      2467888888


Q ss_pred             CceeeeeecCC---CcceEEEEECCCCCEEEEeec--------------------CCcEEEEECCCCceeeeccCCCC--
Q psy4391         100 SGKCLKTLKGH---SNYVFCCNFNPQSNLIVSGSF--------------------DESVRIWDVRTGKCLKTLPAHSD--  154 (231)
Q Consensus       100 ~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~--------------------d~~i~v~d~~~~~~~~~~~~~~~--  154 (231)
                      +.+....+...   ...-....+.|..+.+++...                    ..++.+||+.+.+.++.+.....  
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            77766655432   233456677888888887654                    34699999999998888776543  


Q ss_pred             CeEEEEEcC--CCCeE-EEEecCCeEEEE-eCCCCceee----eeecC--------C--------CCCeEEEEECCCCCE
Q psy4391         155 PVSAVHFNR--DGSLI-VSSSYDGLCRIW-DTASGQCLK----TLIDD--------D--------NPPVSFVKFSPNGKY  210 (231)
Q Consensus       155 ~v~~~~~~~--~~~~l-~~~~~dg~i~v~-d~~~~~~~~----~~~~~--------~--------~~~i~~~~~s~~g~~  210 (231)
                      ....+.|..  +..+= +.+.....|..| ....++...    .+...        .        .+-++.|..|.|.++
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            345667754  44443 333344455544 323333211    11110        0        133677889999999


Q ss_pred             EEEEeC-CCeEEEEeC-CCCCC
Q psy4391         211 ILAATL-DNTLKLWDS-YPCLP  230 (231)
Q Consensus       211 l~~~s~-d~~v~vwd~-~~~~~  230 (231)
                      |+++.. +|.|+.||. .|.-|
T Consensus       326 LYvs~W~~GdvrqYDISDP~~P  347 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPFNP  347 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTTS-
T ss_pred             EEEEcccCCcEEEEecCCCCCC
Confidence            988885 899999994 55544

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.92  E-value=0.0037  Score=51.39  Aligned_cols=153  Identities=16%  Similarity=0.250  Sum_probs=92.9

Q ss_pred             EECCCCCEEEEEeCCC------------------cEEEeecCCCcEEEEEecccccEE------EEEEC----CCCC---
Q psy4391          34 KFSPNGEWLASSSADK------------------LIKIWGAYDGKFEKTISGHKLGIS------DVAWS----SDSR---   82 (231)
Q Consensus        34 ~~~~~~~~l~~~~~dg------------------~i~i~~~~~~~~~~~~~~~~~~v~------~~~~~----~~~~---   82 (231)
                      ++.+.+.+++.+..++                  .+.-+|..+++.............      .....    -++.   
T Consensus       223 a~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~  302 (488)
T cd00216         223 TYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVP  302 (488)
T ss_pred             eEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeE
Confidence            4444556777776554                  688888888887766542111110      00111    1232   


Q ss_pred             EEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEe------------------ecCCcEEEEECCCCc
Q psy4391          83 LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG------------------SFDESVRIWDVRTGK  144 (231)
Q Consensus        83 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~d~~i~v~d~~~~~  144 (231)
                      .++.++.+|.+...|.++++.+-......   ..+..+|  ..++.+                  ..+|.+.-+|+.+|+
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~  377 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK  377 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence            57788889999999999998765543210   1122333  222222                  235788899999998


Q ss_pred             eeeeccCCC--------CCe--EEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeec
Q psy4391         145 CLKTLPAHS--------DPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID  193 (231)
Q Consensus       145 ~~~~~~~~~--------~~v--~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  193 (231)
                      .+.......        .+.  ..+..  .+..+++++.||.++.+|..+++.+-+...
T Consensus       378 ~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         378 VVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             EeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            877665431        111  11222  457788889999999999999987766543

The alignment model contains an 8-bladed beta-propeller.

>KOG1832|consensus

Probab=97.89  E-value=1.8e-05  Score=66.53  Aligned_cols=121  Identities=24%  Similarity=0.414  Sum_probs=93.7

Q ss_pred             eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC--eEEEEeC
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG--LCRIWDT  182 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~v~d~  182 (231)
                      +.+..+....++++|+.+.+.|+.|+..|.|++|++.+|........|..+++.+.-+.||..+++.+.-.  ...+|++
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence            44556777889999999999999999999999999999999899999999999999999998877655433  4568988


Q ss_pred             CCC-ceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy4391         183 ASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       183 ~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~~  230 (231)
                      .+- .....+. +    -..+.|+..-++-+.|+....+.+||...|-|
T Consensus      1175 ~s~~~~~Hsf~-e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD-E----DKAVKFSNSLQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred             ccccCcccccc-c----cceeehhhhHHHHHhcccccceEEEecccCcH
Confidence            652 2222221 1    13467887766667777778999999877754

>KOG1008|consensus

Probab=97.89  E-value=4e-06  Score=67.62  Aligned_cols=159  Identities=21%  Similarity=0.391  Sum_probs=100.5

Q ss_pred             ecccccceEEEEECC-CCCEEEEEe----CCCcEEEeecCCC----cEEEEEec-ccccEEEEEECCCCCEEEEecCCCc
Q psy4391          23 LAGHTKAVSSVKFSP-NGEWLASSS----ADKLIKIWGAYDG----KFEKTISG-HKLGISDVAWSSDSRLLVSGSDDKT   92 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~-~~~~l~~~~----~dg~i~i~~~~~~----~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~g~   92 (231)
                      ..+|.+..++++|++ |.+.||+|-    .|..+.|||+.++    +....+.+ ...+..+++|.-+.+.+++|.....
T Consensus        98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~  177 (783)
T KOG1008|consen   98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRS  177 (783)
T ss_pred             cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccch
Confidence            346778899999998 556777763    3568999998755    11122222 3445668899988888899999999


Q ss_pred             EEEEeCCCce-eeeeecCCCcceEEEEECC-CCCEEEEeecCCcEEEEEC-CCC-ceeeeccCC----CCCeEEEEEcCC
Q psy4391          93 LKIWELSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV-RTG-KCLKTLPAH----SDPVSAVHFNRD  164 (231)
Q Consensus        93 i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~-~~~-~~~~~~~~~----~~~v~~~~~~~~  164 (231)
                      +.++|++... ....+.  ...+..+.++| .+++++. ..|+.+.+||. ++- +.+..+...    ...+..++|.|.
T Consensus       178 ~~ifdlRqs~~~~~svn--Tk~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt  254 (783)
T KOG1008|consen  178 VHIFDLRQSLDSVSSVN--TKYVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT  254 (783)
T ss_pred             hhhhhhhhhhhhhhhhh--hhhcccceecCCCCCceec-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence            9999987322 111111  22334455677 4556654 44999999993 322 222222222    234888999985


Q ss_pred             CC-eEEEEec-CCeEEEEeCCC
Q psy4391         165 GS-LIVSSSY-DGLCRIWDTAS  184 (231)
Q Consensus       165 ~~-~l~~~~~-dg~i~v~d~~~  184 (231)
                      .. .+++... .++|+++|+..
T Consensus       255 rtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  255 RTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CcchhhhhccCcceEEEecccc
Confidence            43 4455554 47899998753

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.88  E-value=0.0099  Score=48.92  Aligned_cols=187  Identities=18%  Similarity=0.208  Sum_probs=106.3

Q ss_pred             CCEEEEEeCCCcEEEeecCCCcEEEEEecccc------cEE--EEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCC
Q psy4391          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKL------GIS--DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH  110 (231)
Q Consensus        39 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~  110 (231)
                      +..++.++.++.+.-.|..+++..........      .+.  .+... ++..++.++.++.|.-+|.++++.+-.....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            45566777789999999988876655432211      000  01111 2257778888999999999999877655432


Q ss_pred             Ccc--eEEEEECC--CCCEEEEee---------cCCcEEEEECCCCceeeeccCCCC--------------------Ce-
Q psy4391         111 SNY--VFCCNFNP--QSNLIVSGS---------FDESVRIWDVRTGKCLKTLPAHSD--------------------PV-  156 (231)
Q Consensus       111 ~~~--v~~~~~~~--~~~~l~~~~---------~d~~i~v~d~~~~~~~~~~~~~~~--------------------~v-  156 (231)
                      ...  -..+.-+|  .+..++.++         .++.+..+|..+|+.+........                    .+ 
T Consensus       140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw  219 (488)
T cd00216         140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW  219 (488)
T ss_pred             CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence            210  00011111  124454443         367889999999988776543211                    01 


Q ss_pred             EEEEEcCCCCeEEEEecCC------------------eEEEEeCCCCceeeeeecCCC---------CCeEEEEE-CCCC
Q psy4391         157 SAVHFNRDGSLIVSSSYDG------------------LCRIWDTASGQCLKTLIDDDN---------PPVSFVKF-SPNG  208 (231)
Q Consensus       157 ~~~~~~~~~~~l~~~~~dg------------------~i~v~d~~~~~~~~~~~~~~~---------~~i~~~~~-s~~g  208 (231)
                      ...++++.+..++.++.++                  .+.-+|+.+++.+=.......         .++. ... .-+|
T Consensus       220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~-~~~~~~~g  298 (488)
T cd00216         220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSL-ADIKPKDG  298 (488)
T ss_pred             CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeE-EeccccCC
Confidence            1244555566777776554                  688889999886543321110         1110 000 1233


Q ss_pred             C---EEEEEeCCCeEEEEeCCC
Q psy4391         209 K---YILAATLDNTLKLWDSYP  227 (231)
Q Consensus       209 ~---~l~~~s~d~~v~vwd~~~  227 (231)
                      .   .+++++.+|.+.-.|...
T Consensus       299 ~~~~~V~~g~~~G~l~ald~~t  320 (488)
T cd00216         299 KPVPAIVHAPKNGFFYVLDRTT  320 (488)
T ss_pred             CeeEEEEEECCCceEEEEECCC
Confidence            3   577777788887777643

The alignment model contains an 8-bladed beta-propeller.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.86  E-value=0.0038  Score=49.08  Aligned_cols=187  Identities=21%  Similarity=0.298  Sum_probs=99.5

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecc-----------------cccEEEEEECCCCCEEEEecC
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-----------------KLGISDVAWSSDSRLLVSGSD   89 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~   89 (231)
                      ...+....|||+|+.++... ++.|.+++..++...+.....                 -..-..+-|+||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            45688899999999998764 678999987666333222111                 012245789999999886532


Q ss_pred             C-Cc-----------------------------------EEEEeCCCceeee-ee----cCCCcceEEEEECCCCCEEEE
Q psy4391          90 D-KT-----------------------------------LKIWELSSGKCLK-TL----KGHSNYVFCCNFNPQSNLIVS  128 (231)
Q Consensus        90 ~-g~-----------------------------------i~~~d~~~~~~~~-~~----~~~~~~v~~~~~~~~~~~l~~  128 (231)
                      | ..                                   +.++|+++++... ..    ......+..+.|.+++..++.
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            2 22                                   3334444433211 00    122345677888888883333


Q ss_pred             e--ecCC---cEEEEECCCCceeeecc-CCCCCe---EEEEEc-CCCC-eEEEEecCC--eEEEEeCCCCceeeeeecCC
Q psy4391         129 G--SFDE---SVRIWDVRTGKCLKTLP-AHSDPV---SAVHFN-RDGS-LIVSSSYDG--LCRIWDTASGQCLKTLIDDD  195 (231)
Q Consensus       129 ~--~~d~---~i~v~d~~~~~~~~~~~-~~~~~v---~~~~~~-~~~~-~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~  195 (231)
                      .  +.+.   .+.++|..++....... ...+.+   ....+. +++. ++.....+|  .|.+++...+.. .. ....
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~-lT~G  278 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQ-LTSG  278 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EE-SS-S
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-ec-cccC
Confidence            3  3332   25667877665422221 111222   244554 5555 444555677  555667766652 23 3334


Q ss_pred             CCCe-EEEEECCCCCEEEEEeC
Q psy4391         196 NPPV-SFVKFSPNGKYILAATL  216 (231)
Q Consensus       196 ~~~i-~~~~~s~~g~~l~~~s~  216 (231)
                      ...| ..+.++++++.|+..+.
T Consensus       279 ~~~V~~i~~~d~~~~~iyf~a~  300 (353)
T PF00930_consen  279 DWEVTSILGWDEDNNRIYFTAN  300 (353)
T ss_dssp             SS-EEEEEEEECTSSEEEEEES
T ss_pred             ceeecccceEcCCCCEEEEEec
Confidence            4455 34678888877655443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>smart00320 WD40 WD40 repeats

Probab=97.85  E-value=7.1e-05  Score=37.26  Aligned_cols=37  Identities=46%  Similarity=0.839  Sum_probs=31.7

Q ss_pred             eeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         145 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       145 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      ....+..|...+.++.|.+++..+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4455566778899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=97.85  E-value=0.0015  Score=54.55  Aligned_cols=181  Identities=8%  Similarity=0.047  Sum_probs=87.7

Q ss_pred             CCCEEEEEeCC------CcEEEeecCCCcEEEEE--ecccccEEEEEECCCCCEEEEecCCC-----cEEEEeCCCceee
Q psy4391          38 NGEWLASSSAD------KLIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSDDK-----TLKIWELSSGKCL  104 (231)
Q Consensus        38 ~~~~l~~~~~d------g~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~g-----~i~~~d~~~~~~~  104 (231)
                      ++...+.|+.+      ..+..||..+......-  ........ + ..-+++..+.|+.++     .+..||..+.+..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~-~-~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS-L-AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee-E-EEECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            44555566643      23566776655432211  11111111 1 123566667777654     4778998765432


Q ss_pred             e--eecCCCcceEEEEECCCCCEEEEeecCC-----------------------cEEEEECCCCcee--eeccCCCCCeE
Q psy4391         105 K--TLKGHSNYVFCCNFNPQSNLIVSGSFDE-----------------------SVRIWDVRTGKCL--KTLPAHSDPVS  157 (231)
Q Consensus       105 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------~i~v~d~~~~~~~--~~~~~~~~~v~  157 (231)
                      .  .+.........+.  -++.+.+.|+.++                       .+..||..+.+..  ..+....... 
T Consensus       381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-  457 (557)
T PHA02713        381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-  457 (557)
T ss_pred             ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-
Confidence            2  1111111111122  2577777777542                       4677888766532  1221111111 


Q ss_pred             EEEEcCCCCeEEEEecCC------eEEEEeCCC-CceeeeeecCCCCCeEEEEECCCCCEEEEEeCCC--eEEEEeC
Q psy4391         158 AVHFNRDGSLIVSSSYDG------LCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN--TLKLWDS  225 (231)
Q Consensus       158 ~~~~~~~~~~l~~~~~dg------~i~v~d~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~--~v~vwd~  225 (231)
                      +++ .-+++..+.|+.++      .+..||+.+ .+....-..........+ ..-+|+..++|+.++  .+..||.
T Consensus       458 ~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~-~~~~~~iyv~Gg~~~~~~~e~yd~  532 (557)
T PHA02713        458 GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT-ILHDNTIMMLHCYESYMLQDTFNV  532 (557)
T ss_pred             cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee-EEECCEEEEEeeecceeehhhcCc
Confidence            122 22467777776542      467899887 453321111111111112 223678888888888  7777775

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.85  E-value=0.0068  Score=48.20  Aligned_cols=195  Identities=14%  Similarity=0.120  Sum_probs=103.5

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe--c------ccccEEEEEEC-----CCC---CEE
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--G------HKLGISDVAWS-----SDS---RLL   84 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--~------~~~~v~~~~~~-----~~~---~~l   84 (231)
                      .-+....+.|++++.| |=-++|+|..+|.+.|.|.+.........  .      ....++.+.|.     .|+   -.+
T Consensus        80 ~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             EEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             hheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            3444557899999997 45588999999999999998776554421  2      12246667774     233   357


Q ss_pred             EEecCCCcEEEEeCC--C-cee----eeeecCCCcceEEEE-ECCC-C-------------------CEEEEeecCCcEE
Q psy4391          85 VSGSDDKTLKIWELS--S-GKC----LKTLKGHSNYVFCCN-FNPQ-S-------------------NLIVSGSFDESVR  136 (231)
Q Consensus        85 ~~~~~~g~i~~~d~~--~-~~~----~~~~~~~~~~v~~~~-~~~~-~-------------------~~l~~~~~d~~i~  136 (231)
                      ++|...|.+.+|.+.  . +..    ......+.+.+..+. ++.+ |                   .-++....+..++
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence            888899999999764  1 111    111112334443332 2211 0                   1234445567799


Q ss_pred             EEECCCCceeeeccCCCCCeEEEEEc-----CCCCeEEEEecCCeEEEEeCCCCceeeeeecCCC---CCeEEEEECCCC
Q psy4391         137 IWDVRTGKCLKTLPAHSDPVSAVHFN-----RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN---PPVSFVKFSPNG  208 (231)
Q Consensus       137 v~d~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~---~~i~~~~~s~~g  208 (231)
                      ++.+.+.+...+.....-.+..+.+-     ..+..|++-..+|.+++|.+..-+.+........   ..+....++++|
T Consensus       239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G  318 (395)
T PF08596_consen  239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG  318 (395)
T ss_dssp             EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred             EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence            99988777655544322233344442     3466778888999999999998877665543211   112235678999


Q ss_pred             CEEEEEeC
Q psy4391         209 KYILAATL  216 (231)
Q Consensus       209 ~~l~~~s~  216 (231)
                      +.++..+.
T Consensus       319 di~~~~gp  326 (395)
T PF08596_consen  319 DIFYWTGP  326 (395)
T ss_dssp             -EEEE-SS
T ss_pred             CEEEEeCc
Confidence            97777654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617|consensus

Probab=97.81  E-value=5.4e-05  Score=63.41  Aligned_cols=107  Identities=13%  Similarity=0.320  Sum_probs=84.7

Q ss_pred             EEECCCCCEEEEec----CCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc
Q psy4391          75 VAWSSDSRLLVSGS----DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP  150 (231)
Q Consensus        75 ~~~~~~~~~l~~~~----~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  150 (231)
                      ..|+|...++++++    ..|.|.+|- ++|++.+.+.. .-.+.+++|+|..-.|+.|-.-|.+.+|..++.+.-....
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~   98 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE   98 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence            57889888887664    357787774 45665444432 2234568999999999999999999999988777656667


Q ss_pred             CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCC
Q psy4391         151 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (231)
Q Consensus       151 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (231)
                      .|..++..+.|+++|..++++..-|.+.+|...
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            889999999999999999999999999999764

>KOG2444|consensus

Probab=97.80  E-value=6.6e-05  Score=53.43  Aligned_cols=139  Identities=15%  Similarity=0.144  Sum_probs=83.3

Q ss_pred             EEEecCCCcEEEEeCCCceee-eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce-eeeccCCCCCeEEE-E
Q psy4391          84 LVSGSDDKTLKIWELSSGKCL-KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-LKTLPAHSDPVSAV-H  160 (231)
Q Consensus        84 l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v~~~-~  160 (231)
                      +...+.+|.|+-+++...+.. +....+....   ..-..+..+++|+.+|.|++|....... ..........+.++ .
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            344556777776666532211 1111111111   1222356799999999999998763221 11112222333332 2


Q ss_pred             EcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEE--eCCCeEEEEeC
Q psy4391         161 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--TLDNTLKLWDS  225 (231)
Q Consensus       161 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--s~d~~v~vwd~  225 (231)
                      ...++.+..+++.+|.|+.|++.-++.+.....+...++.....+..+++++.+  |.|..++.|+.
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence            233556788999999999999988887766554443455556666777888887  78888888885

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.79  E-value=0.0092  Score=45.75  Aligned_cols=190  Identities=14%  Similarity=0.110  Sum_probs=105.0

Q ss_pred             EEEECCCCCEE-EEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecC-
Q psy4391          32 SVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG-  109 (231)
Q Consensus        32 ~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~-  109 (231)
                      +..|.++...| .+--..+.|.-|+..+++. ..+... ..+.++.....+..|+++..  -+.+++.+++.....+.. 
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence            45677877744 4545567888888765543 223222 22344433334444555433  345566655444222211 


Q ss_pred             ----CCcceEEEEECCCCCEEEEeec-----------CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec-
Q psy4391         110 ----HSNYVFCCNFNPQSNLIVSGSF-----------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-  173 (231)
Q Consensus       110 ----~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  173 (231)
                          ...........|+|.+.++.-.           .|.++.+|. .+..++.+..+-.....++||||++.++.+-. 
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~  183 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP  183 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence                1234456778899888776533           133555554 34444444443334567999999987776654 


Q ss_pred             CCeEEEEeCCC--C----ceeeeeecCCCCCeEEEEECCCCCEEEEEeCCC-eEEEEeCC
Q psy4391         174 DGLCRIWDTAS--G----QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TLKLWDSY  226 (231)
Q Consensus       174 dg~i~v~d~~~--~----~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~-~v~vwd~~  226 (231)
                      .+.|.-|++..  +    +............--.++.+.+|.+.+++..+| .|.+|+..
T Consensus       184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            47888887652  1    111111212222234577788888776554444 99999864

>KOG2395|consensus

Probab=97.77  E-value=0.001  Score=53.15  Aligned_cols=143  Identities=24%  Similarity=0.348  Sum_probs=94.9

Q ss_pred             CCCCEEE-EecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCC-------EEEEeecCCcEEEEECCCCce--eee
Q psy4391          79 SDSRLLV-SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-------LIVSGSFDESVRIWDVRTGKC--LKT  148 (231)
Q Consensus        79 ~~~~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~v~d~~~~~~--~~~  148 (231)
                      .+.++|+ .+.....++-.|++.|+.+..++.+.. |.-..+.|+..       .-+.|-.+..|.-||.+-...  +..
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence            3444544 444456788889999999888887665 55556666542       234566788899999884322  111


Q ss_pred             ccCC----CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         149 LPAH----SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       149 ~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      ...|    ..-..|.+-..+ -++++|+.+|.|++||- .+..-++.+..-+.+|..+..+.+|+++++.+ +..+.+-|
T Consensus       422 ~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~  498 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID  498 (644)
T ss_pred             eeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence            1111    122344444433 47899999999999997 45545555666678899999999999988777 56776666


Q ss_pred             C
Q psy4391         225 S  225 (231)
Q Consensus       225 ~  225 (231)
                      +
T Consensus       499 t  499 (644)
T KOG2395|consen  499 T  499 (644)
T ss_pred             E
Confidence            3

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.70  E-value=0.012  Score=44.51  Aligned_cols=143  Identities=20%  Similarity=0.238  Sum_probs=85.4

Q ss_pred             CCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee-----------
Q psy4391          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK-----------  105 (231)
Q Consensus        37 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~-----------  105 (231)
                      ..++.|+.|+.+| +.+++.........+. ....|..+...|+-+.+++-+ |+.++++++..-....           
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            4578899998888 8888883332222222 223488898888877776665 4999999987533222           


Q ss_pred             ----eecCCCcceEEEE--ECCCCCEEEEeecCCcEEEEECCCC-----ceeeeccCCCCCeEEEEEcCCCCeEEEEecC
Q psy4391         106 ----TLKGHSNYVFCCN--FNPQSNLIVSGSFDESVRIWDVRTG-----KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus       106 ----~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~v~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                          .+. ....+...+  -...+...+......+|.+|.....     +..+.+.. ...+..++|.  ++.++.|..+
T Consensus        82 ~~~~~~~-~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   82 SLPTKLP-ETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             ccccccc-ccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC
Confidence                111 112232223  1233444444555568888877643     34444443 4678888888  5667776644


Q ss_pred             CeEEEEeCCCCce
Q psy4391         175 GLCRIWDTASGQC  187 (231)
Q Consensus       175 g~i~v~d~~~~~~  187 (231)
                      + ..+.|+.++..
T Consensus       158 ~-f~~idl~~~~~  169 (275)
T PF00780_consen  158 G-FYLIDLNTGSP  169 (275)
T ss_pred             c-eEEEecCCCCc
Confidence            4 66778776543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.64  E-value=0.0044  Score=53.05  Aligned_cols=131  Identities=21%  Similarity=0.281  Sum_probs=85.3

Q ss_pred             CCCcEEEeecCCCcEEEEEeccccc-EEEEEECCC-------CCEEEEecCCCcEEEEeCCCce--eeee-ec--CCCcc
Q psy4391          47 ADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSD-------SRLLVSGSDDKTLKIWELSSGK--CLKT-LK--GHSNY  113 (231)
Q Consensus        47 ~dg~i~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~-------~~~l~~~~~~g~i~~~d~~~~~--~~~~-~~--~~~~~  113 (231)
                      ....|+-.|++.|+.+..+..+... |..+  .|+       ....+.|-.+..+..||.+-..  .+.. .+  .....
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence            4567888899999998888766533 4443  332       2334566677788899987532  2210 10  11233


Q ss_pred             eEEEEECCCCCEEEEeecCCcEEEEECCCCcee-eeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeC
Q psy4391         114 VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (231)
Q Consensus       114 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (231)
                      ..|++-+ ...+||.|+.+|.|++||- .|... ..+.+-..||..+..+.||+++++.+ +..+.+++.
T Consensus       580 Fs~~aTt-~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  580 FSCFATT-EDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ceEEEec-CCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            4454444 4467899999999999994 33332 33455578999999999999988776 445556654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.62  E-value=0.018  Score=44.28  Aligned_cols=192  Identities=14%  Similarity=0.135  Sum_probs=112.6

Q ss_pred             EEEECCCCCEEEEE--eCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC-Cceeeeee-
Q psy4391          32 SVKFSPNGEWLASS--SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS-SGKCLKTL-  107 (231)
Q Consensus        32 ~~~~~~~~~~l~~~--~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~-~~~~~~~~-  107 (231)
                      .+.++.||++++..  +-.-+|.|-|+...+...++...  ++..+-=..+ +.+.+.|.||.+.-..+. .++..+.. 
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t  175 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKST  175 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeec
Confidence            46788999988764  34467899999888887777532  3332211222 347788889988888776 34433221 


Q ss_pred             ---cCCCcce-EEEEECCCCCEEEEeecCCcEEEEECCCCcee--eeccC----------CCCCeEEEEEcCCCCeEEEE
Q psy4391         108 ---KGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL--KTLPA----------HSDPVSAVHFNRDGSLIVSS  171 (231)
Q Consensus       108 ---~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~----------~~~~v~~~~~~~~~~~l~~~  171 (231)
                         ....+++ ..-.+...+..++..+.+|.|+-.|+......  ..+..          ..+....+++++....|++-
T Consensus       176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL  255 (342)
T PF06433_consen  176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL  255 (342)
T ss_dssp             EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred             cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence               1112222 12233344555666788888888887654321  11110          01223346777655544432


Q ss_pred             ec--------CC--eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC-EEEEEe-CCCeEEEEeCCCC
Q psy4391         172 SY--------DG--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAAT-LDNTLKLWDSYPC  228 (231)
Q Consensus       172 ~~--------dg--~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s-~d~~v~vwd~~~~  228 (231)
                      -.        |+  .|.++|+.+++.+.++....  ++.+|+++.+.+ +|++.+ .++.+.+||....
T Consensus       256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             EEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             ecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            21        11  58888999999888876433  456788888876 665544 5789999997543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.57  E-value=0.023  Score=44.49  Aligned_cols=139  Identities=16%  Similarity=0.155  Sum_probs=69.1

Q ss_pred             EEECCCCCEEE-EEeCCCc--EEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecC
Q psy4391          33 VKFSPNGEWLA-SSSADKL--IKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG  109 (231)
Q Consensus        33 ~~~~~~~~~l~-~~~~dg~--i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~  109 (231)
                      =+|.++|++|+ .+..+|.  +...|+.+++..+...+.........++|+++.++....+..|+-.|+++.+.......
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            35778897655 4555664  55556767665544443222222456788888887766667888889998775544444


Q ss_pred             CCcceEEEEE--CCCCCEEEEeec---C-------------------CcEEEEECCCCceeeeccCCCCCeEEEEEcCCC
Q psy4391         110 HSNYVFCCNF--NPQSNLIVSGSF---D-------------------ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG  165 (231)
Q Consensus       110 ~~~~v~~~~~--~~~~~~l~~~~~---d-------------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~  165 (231)
                      ....+....|  +.++..++..-.   +                   ..|.-.|+.+|+....+. ....+..+.|+|..
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD  199 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence            4444432333  456666543221   1                   124445677766433333 35567889999966


Q ss_pred             CeEEEEe
Q psy4391         166 SLIVSSS  172 (231)
Q Consensus       166 ~~l~~~~  172 (231)
                      ..+++=+
T Consensus       200 p~li~fC  206 (386)
T PF14583_consen  200 PTLIMFC  206 (386)
T ss_dssp             EEEEEEE
T ss_pred             CCEEEEe
Confidence            5555433

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.55  E-value=0.023  Score=43.76  Aligned_cols=172  Identities=15%  Similarity=0.177  Sum_probs=103.5

Q ss_pred             CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec----------CCCcEEEEeCCCceeeeeecCCCc------
Q psy4391          49 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWELSSGKCLKTLKGHSN------  112 (231)
Q Consensus        49 g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~g~i~~~d~~~~~~~~~~~~~~~------  112 (231)
                      +.+.++|..+++.+-.+.....  ..+..+|+++.++++.          ..-.|.+||.++-.....+.-...      
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            5788999888888777764332  2356799999888653          234689999998766554321111      


Q ss_pred             -ceEEEEECCCCCEEEEeec--CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCC-CCcee
Q psy4391         113 -YVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-SGQCL  188 (231)
Q Consensus       113 -~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~  188 (231)
                       ......++.++++++.-..  ...|.|.|+..++.+..+.. .++....-..  .+-+.+-|.||.+....+. .|+..
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEecC--CCceEEEecCCceEEEEECCCCCEe
Confidence             1122467888888776543  45688999998888777654 2322222222  2457777889998888776 44433


Q ss_pred             ee---eecC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         189 KT---LIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       189 ~~---~~~~-~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .+   ++.. ..+.+..-+++..+..++..+.+|.|.--|.
T Consensus       172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl  212 (342)
T PF06433_consen  172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADL  212 (342)
T ss_dssp             EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred             EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEec
Confidence            22   1222 2222223344555556666788888877664

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PHA03098 kelch-like protein; Provisional

Probab=97.55  E-value=0.011  Score=49.15  Aligned_cols=180  Identities=15%  Similarity=0.149  Sum_probs=84.3

Q ss_pred             CCCEEEEEeCCC------cEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCC-----CcEEEEeCCCceee
Q psy4391          38 NGEWLASSSADK------LIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSGKCL  104 (231)
Q Consensus        38 ~~~~l~~~~~dg------~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~-----g~i~~~d~~~~~~~  104 (231)
                      ++..++.|+.++      .+..||..+......-.  ........+.  -+++.++.|+.+     ..+..||..+.+..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            344555665432      45667766555432111  1111111122  256666777754     24677887765432


Q ss_pred             ee--ecCCCcceEEEEECCCCCEEEEeecC------CcEEEEECCCCceeee--ccCCCCCeEEEEEcCCCCeEEEEecC
Q psy4391         105 KT--LKGHSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus       105 ~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      ..  +.........  ..-++.+.+.|+.+      ..+..||+.+.+....  +....... ++. ..++..++.|+.+
T Consensus       372 ~~~~lp~~r~~~~~--~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~  447 (534)
T PHA03098        372 EEPPLIFPRYNPCV--VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGIS  447 (534)
T ss_pred             eCCCcCcCCccceE--EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCcc
Confidence            21  1111111111  12356677777632      3478889876643221  11111111 122 2356666666643


Q ss_pred             --------CeEEEEeCCCCceeeeeecCC-CCCeEEEEECCCCCEEEEEeCC-----CeEEEEeC
Q psy4391         175 --------GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDS  225 (231)
Q Consensus       175 --------g~i~v~d~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~s~d-----~~v~vwd~  225 (231)
                              ..+.+||..+++....-.... ......+.  -+++.++.|+.+     +.|.+||.
T Consensus       448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~  510 (534)
T PHA03098        448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDD  510 (534)
T ss_pred             CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeC
Confidence                    237889988776432211110 11111222  266777777654     46788875

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.48  E-value=0.024  Score=42.40  Aligned_cols=189  Identities=15%  Similarity=0.207  Sum_probs=118.8

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecc-cccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      +-+..++++.|+|+.+.|++-.....-.++-..+|.....+.-. -.....+.+.-++++.++--.++.+.+..+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            45567999999999998887777777777766678877776421 22345578888888888888888888877665422


Q ss_pred             eeeec---------CC-CcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec---cCC-------CCCeEEEEEcC
Q psy4391         104 LKTLK---------GH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL---PAH-------SDPVSAVHFNR  163 (231)
Q Consensus       104 ~~~~~---------~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~-------~~~v~~~~~~~  163 (231)
                      +...+         .+ +...-.++|+|....+..+-+-.-+.+|........-..   ..+       -..++.+.|++
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~  242 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA  242 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence            21111         11 345667999999888888888777888776533211110   011       12456777876


Q ss_pred             -CCCeEEEEecCCeEEEEeCCCCceeeeeec--------CCCCCeEEEEECCCCCEEEEE
Q psy4391         164 -DGSLIVSSSYDGLCRIWDTASGQCLKTLID--------DDNPPVSFVKFSPNGKYILAA  214 (231)
Q Consensus       164 -~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--------~~~~~i~~~~~s~~g~~l~~~  214 (231)
                       .+.+++-+..++.+...|.... .+..+..        .+.+....++.+++|...+++
T Consensus       243 ~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS  301 (316)
T COG3204         243 ITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS  301 (316)
T ss_pred             CCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence             4556666667777777776543 2332211        122334567888888644443

>KOG2079|consensus

Probab=97.47  E-value=0.00094  Score=57.59  Aligned_cols=101  Identities=27%  Similarity=0.442  Sum_probs=73.6

Q ss_pred             CCCEEEEeecCCcEEEEECCCCce-eeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCC--C
Q psy4391         122 QSNLIVSGSFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP--P  198 (231)
Q Consensus       122 ~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~--~  198 (231)
                      .+..++.|+..|.+-..|++..-. ...-....++|++++|+.+|..++.|-.+|.|.+||...++..+.+.....+  .
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            456788899999998888765321 1111233579999999999999999999999999999998877766543322  2


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         199 VSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       199 i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      +..+.+..++..++++...|.  +|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc--eEE
Confidence            344556677777777777776  666

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.47  E-value=0.026  Score=44.25  Aligned_cols=162  Identities=17%  Similarity=0.180  Sum_probs=79.8

Q ss_pred             ecCCCcEEEEEecccccEEE-----EEECCCCCEEEEecC-C--CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEE
Q psy4391          55 GAYDGKFEKTISGHKLGISD-----VAWSSDSRLLVSGSD-D--KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (231)
Q Consensus        55 ~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-~--g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (231)
                      |..++..+..++........     -+|.++|+.|+.++. +  ..+.+.|+++++..+...+.........++|+.+.+
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~   95 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL   95 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence            45677777666654433332     367889977765544 4  467778999888665444322222234577888888


Q ss_pred             EEeecCCcEEEEECCCCceeeeccCCCCCeEEEEE--cCCCCeEEEEec----------------------CCeEEEEeC
Q psy4391         127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSY----------------------DGLCRIWDT  182 (231)
Q Consensus       127 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~----------------------dg~i~v~d~  182 (231)
                      +....+..|.-.|+++.+...........+....|  +.++..++..-.                      ...|...|+
T Consensus        96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen   96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            77666678999999988764444444444433444  345555433211                      123555688


Q ss_pred             CCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q psy4391         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN  218 (231)
Q Consensus       183 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~  218 (231)
                      .+++....+  .....+..+.|+|....++.-+.+|
T Consensus       176 ~tG~~~~v~--~~~~wlgH~~fsP~dp~li~fCHEG  209 (386)
T PF14583_consen  176 KTGERKVVF--EDTDWLGHVQFSPTDPTLIMFCHEG  209 (386)
T ss_dssp             TT--EEEEE--EESS-EEEEEEETTEEEEEEEEE-S
T ss_pred             CCCceeEEE--ecCccccCcccCCCCCCEEEEeccC
Confidence            887743333  2344567788999776665554443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.46  E-value=0.026  Score=42.20  Aligned_cols=145  Identities=12%  Similarity=0.133  Sum_probs=87.6

Q ss_pred             cEEEEEECCCCCEEEEec---CCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEE-CCCCcee
Q psy4391          71 GISDVAWSSDSRLLVSGS---DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-VRTGKCL  146 (231)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d-~~~~~~~  146 (231)
                      .+.+.+++++++.++...   ....++++.....  ...+. ....+....|++++...+....+....++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            578889999999887665   3335555554332  22221 123566778999988888777777766663 3333221


Q ss_pred             -eeccC--CCCCeEEEEEcCCCCeEEEEe---cCCeEEEEeCC---CC--cee---eeeecCCCCCeEEEEECCCCCEEE
Q psy4391         147 -KTLPA--HSDPVSAVHFNRDGSLIVSSS---YDGLCRIWDTA---SG--QCL---KTLIDDDNPPVSFVKFSPNGKYIL  212 (231)
Q Consensus       147 -~~~~~--~~~~v~~~~~~~~~~~l~~~~---~dg~i~v~d~~---~~--~~~---~~~~~~~~~~i~~~~~s~~g~~l~  212 (231)
                       .....  ..+.|.++.++|||..++...   .++.+.+--+.   .+  ..+   ..+.......+..++|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence             11111  112899999999999887665   24666665432   22  111   111112234678899999999887


Q ss_pred             EEeCCC
Q psy4391         213 AATLDN  218 (231)
Q Consensus       213 ~~s~d~  218 (231)
                      .+...+
T Consensus       182 ~~~~~~  187 (253)
T PF10647_consen  182 LGRSAG  187 (253)
T ss_pred             EeCCCC
Confidence            776544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4441|consensus

Probab=97.43  E-value=0.016  Score=48.50  Aligned_cols=179  Identities=17%  Similarity=0.224  Sum_probs=92.1

Q ss_pred             CCEEEEEeCC-C-----cEEEeecCCCcEEEE--EecccccEEEEEECCCCCEEEEecCCC-----cEEEEeCCCceeee
Q psy4391          39 GEWLASSSAD-K-----LIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSRLLVSGSDDK-----TLKIWELSSGKCLK  105 (231)
Q Consensus        39 ~~~l~~~~~d-g-----~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~g-----~i~~~d~~~~~~~~  105 (231)
                      +...++|+.| |     .+..||..+......  +........ ++ .-+|...++|+.||     .+-.||..+.+...
T Consensus       333 ~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~  410 (571)
T KOG4441|consen  333 GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP  410 (571)
T ss_pred             CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEecCCCCcccc
Confidence            4566778887 3     466777766654331  111111111 11 12567778888886     46778877654221


Q ss_pred             e--ecCCCcceEEEEECCCCCEEEEeecCC------cEEEEECCCCceee--eccCCCCCeEEEEEcCCCCeEEEEecCC
Q psy4391         106 T--LKGHSNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus       106 ~--~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                      .  ..........  ..-+|.+.++|+.++      .+..||..+++...  .+....... .++. -++.+++.|+.|+
T Consensus       411 va~m~~~r~~~gv--~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  411 VAPMLTRRSGHGV--AVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDG  486 (571)
T ss_pred             cCCCCcceeeeEE--EEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccC
Confidence            1  1111111111  223577788887654      36678887765322  221111111 1222 2577888888776


Q ss_pred             -----eEEEEeCCCCceeeeeecCCCCCeEEEE-ECCCCCEEEEEeCCC-----eEEEEeC
Q psy4391         176 -----LCRIWDTASGQCLKTLIDDDNPPVSFVK-FSPNGKYILAATLDN-----TLKLWDS  225 (231)
Q Consensus       176 -----~i~v~d~~~~~~~~~~~~~~~~~i~~~~-~s~~g~~l~~~s~d~-----~v~vwd~  225 (231)
                           .+..||..+.+....-...  .+..... ..-+++..++|+.||     +|..||+
T Consensus       487 ~~~~~~VE~ydp~~~~W~~v~~m~--~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp  545 (571)
T KOG4441|consen  487 TSALSSVERYDPETNQWTMVAPMT--SPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDP  545 (571)
T ss_pred             CCccceEEEEcCCCCceeEcccCc--cccccccEEEECCEEEEEecccCccccceeEEcCC
Confidence                 3677888877654331111  1111111 223456667777665     6777775

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.40  E-value=0.035  Score=42.46  Aligned_cols=150  Identities=13%  Similarity=0.238  Sum_probs=76.9

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe-CCCceeee
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE-LSSGKCLK  105 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d-~~~~~~~~  105 (231)
                      .+.+..+.-+++|++++++.......-|+.-.......-.....++..+.|.|++...+.+ +.|.|+.=+ ....+.-.
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence            4668888889999998887655555667653222333333345689999999998766544 788888776 22222111


Q ss_pred             e----ecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc---CCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         106 T----LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP---AHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       106 ~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      .    +....-.+..+++.+++...++|+. |.+ +.....|+.-++..   .-..-.+.+.|.++.+-++ .+.+|.+.
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll  299 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLL  299 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEE
T ss_pred             cccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEE
Confidence            1    1122233788999998887776655 443 33445555433322   2234567788876544444 45677765


Q ss_pred             EE
Q psy4391         179 IW  180 (231)
Q Consensus       179 v~  180 (231)
                      -|
T Consensus       300 ~~  301 (302)
T PF14870_consen  300 RY  301 (302)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.40  E-value=0.013  Score=37.31  Aligned_cols=97  Identities=13%  Similarity=0.241  Sum_probs=62.8

Q ss_pred             EECCCC-CEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCC
Q psy4391         118 NFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN  196 (231)
Q Consensus       118 ~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  196 (231)
                      .+..+| +.|+.|+.|..|++|+-.  ..+..+.. .+.+.+++-... ..++.+-.+|+|-+|+-..    +.+....+
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~----RlWRiKSK   80 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ----RLWRIKSK   80 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc----eeeeeccC
Confidence            344443 689999999999999843  55566554 457777776665 5688888999999997532    22222222


Q ss_pred             CCeEEE-EECCCC---CEEEEEeCCCeEEE
Q psy4391         197 PPVSFV-KFSPNG---KYILAATLDNTLKL  222 (231)
Q Consensus       197 ~~i~~~-~~s~~g---~~l~~~s~d~~v~v  222 (231)
                      ..+.++ .++.+|   +-|++|=.+|+|.+
T Consensus        81 ~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   81 NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            223333 445544   36788888898864

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.40  E-value=0.03  Score=41.58  Aligned_cols=184  Identities=10%  Similarity=0.080  Sum_probs=114.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCC--cEEEeecCCCcEEEEEecccc-cEEEEEECCCCCEEEEecCCCcEEEEeCCCceee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADK--LIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      .-...+.|..+|.++-+.+.-|  .|+.+|..+++......-... --..++... ++...-.=.++...+||.++.+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence            3456788877888887777766  688899998887655432111 011233332 334445567889999999988877


Q ss_pred             eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC--C---CeEEEEEcCCCCeEEEEecCCeEEE
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS--D---PVSAVHFNRDGSLIVSSSYDGLCRI  179 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~---~v~~~~~~~~~~~l~~~~~dg~i~v  179 (231)
                      ..+.-.. .=..++  .++..|+.......++++|..+.+....+....  .   .+..+.+- +|...|=.-....|..
T Consensus       124 ~~~~y~~-EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~  199 (264)
T PF05096_consen  124 GTFPYPG-EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR  199 (264)
T ss_dssp             EEEE-SS-S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEecCC-cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence            7775432 233444  467778888878899999998877666554322  1   34456665 5766666667778888


Q ss_pred             EeCCCCceeeeee-----c---------CCCCCeEEEEECCCCCEEEEEeC
Q psy4391         180 WDTASGQCLKTLI-----D---------DDNPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       180 ~d~~~~~~~~~~~-----~---------~~~~~i~~~~~s~~g~~l~~~s~  216 (231)
                      .|..+|+....+-     .         ......+.||++|.++.|.+.+.
T Consensus       200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            9999998766541     0         01235788999998877776664

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2395|consensus

Probab=97.39  E-value=0.0092  Score=48.04  Aligned_cols=142  Identities=18%  Similarity=0.250  Sum_probs=87.9

Q ss_pred             CCCEE-EEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCC-------EEEEecCCCcEEEEeCCCcee--eeee
Q psy4391          38 NGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-------LLVSGSDDKTLKIWELSSGKC--LKTL  107 (231)
Q Consensus        38 ~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~~g~i~~~d~~~~~~--~~~~  107 (231)
                      +.++| ..+.....++-.|++.|+.+..+.-+.. |..+.+.|+.+       .-+.|-.+..|.-||++-...  +...
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            33443 3455556777788888888888876554 55566666532       123455567788888863211  1111


Q ss_pred             cCC----CcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeC
Q psy4391         108 KGH----SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (231)
Q Consensus       108 ~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (231)
                      +.+    .....|. -.....+|+.|+.+|.|++||--..+....+++-..+|..+..+.+|+++++.+ +..+.+.++
T Consensus       423 q~kqy~~k~nFsc~-aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCF-ATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ecccccccccccee-eecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            111    1112222 233456899999999999999733333334566678999999999999987665 555555554

>PRK10115 protease 2; Provisional

Probab=97.36  E-value=0.079  Score=45.62  Aligned_cols=190  Identities=10%  Similarity=0.074  Sum_probs=95.2

Q ss_pred             ceEEEEECCCCCEEEEEeC-CC----cEEEeecCCCcEEE-EEecccccEEEEEECCCCCEEEEecCC------CcEEEE
Q psy4391          29 AVSSVKFSPNGEWLASSSA-DK----LIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSRLLVSGSDD------KTLKIW   96 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~-dg----~i~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~------g~i~~~   96 (231)
                      .+..+.++|+|++|+.+.. +|    .+++.+..++.... .+.+.  . ..++|.+|++.|+....+      ..|+.+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            4778899999998876433 23    57788887664221 22221  1 458999998877655332      367788


Q ss_pred             eCCCc--eeeeeecCCCcceE-EEEECCCCCEEEEeec---CCcEEEEECC--CCceeeeccCCCCCeEEEEEcCCCCeE
Q psy4391          97 ELSSG--KCLKTLKGHSNYVF-CCNFNPQSNLIVSGSF---DESVRIWDVR--TGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus        97 d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~i~v~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l  168 (231)
                      ++.++  +....+........ ....+.++++++..+.   ++.+.+++..  .+.....+....+....+. +..+.++
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly  283 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY  283 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence            88876  33334443322222 3334447776655433   3568888853  3332222222222222222 2223333


Q ss_pred             EEEecC---CeEEEEeCCCCceeeeeecC-CCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         169 VSSSYD---GLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       169 ~~~~~d---g~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      +....+   ..|...++........+... ....+..+.++. +.++++...+|.-+++
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~  341 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLR  341 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEE
Confidence            332222   23444455422222334333 234566666662 2344445556644443

>KOG4441|consensus

Probab=97.35  E-value=0.023  Score=47.58  Aligned_cols=184  Identities=15%  Similarity=0.148  Sum_probs=94.8

Q ss_pred             CCCCEEEEEeCCC------cEEEeecCCCcEEEEEecc-cccEEEEEECCCCCEEEEecCC-C-----cEEEEeCCCcee
Q psy4391          37 PNGEWLASSSADK------LIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSDD-K-----TLKIWELSSGKC  103 (231)
Q Consensus        37 ~~~~~l~~~~~dg------~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~-g-----~i~~~d~~~~~~  103 (231)
                      ..+.+++.|+.++      .+..||..++.......-. .....+++.. ++...++|+.+ |     .+..||..+.+.
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            3455667777663      5677887666443322111 1112223333 45667788888 3     577788877653


Q ss_pred             eee--ecCCCcceEEEEECCCCCEEEEeecCCc-----EEEEECCCCceeeeccCCCCCeEEEE-EcCCCCeEEEEecCC
Q psy4391         104 LKT--LKGHSNYVFCCNFNPQSNLIVSGSFDES-----VRIWDVRTGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDG  175 (231)
Q Consensus       104 ~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~v~d~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg  175 (231)
                      ...  +.........  ..-+|.+.+.|+.||.     +..||..+.+.-.. ........... -.-+|...++|+.++
T Consensus       362 ~~~a~M~~~R~~~~v--~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGV--AVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             eccCCccCcccccee--EEECCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECCEEEEEcCcCC
Confidence            321  1111111111  1226778888988875     66788776543111 11111111111 122678888888664


Q ss_pred             ------eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeC
Q psy4391         176 ------LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-----TLKLWDS  225 (231)
Q Consensus       176 ------~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~-----~v~vwd~  225 (231)
                            .+..||..+++....-.......-..+ ..-++...++|+.|+     .|..||+
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp  498 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDP  498 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCcccccccceE-EEECCEEEEECCccCCCccceEEEEcC
Confidence                  567889888765332211111111112 234567777777665     3777775

>KOG4499|consensus

Probab=97.35  E-value=0.021  Score=41.34  Aligned_cols=90  Identities=20%  Similarity=0.276  Sum_probs=62.8

Q ss_pred             EEEEECCCCCEEE-EecCCCcEEEEe--CCCce-----eeeeecC----CCcceEEEEECCCCCEEEEeecCCcEEEEEC
Q psy4391          73 SDVAWSSDSRLLV-SGSDDKTLKIWE--LSSGK-----CLKTLKG----HSNYVFCCNFNPQSNLIVSGSFDESVRIWDV  140 (231)
Q Consensus        73 ~~~~~~~~~~~l~-~~~~~g~i~~~d--~~~~~-----~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  140 (231)
                      ..++|+.+.+.+. +-+.+-.|.-||  ..++.     .+..++.    .....-.++++.+|++.++.-+.++|.-+|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            4678988777654 555677787777  44443     2222221    0111123455668889999999999999999


Q ss_pred             CCCceeeeccCCCCCeEEEEEc
Q psy4391         141 RTGKCLKTLPAHSDPVSAVHFN  162 (231)
Q Consensus       141 ~~~~~~~~~~~~~~~v~~~~~~  162 (231)
                      .+|+.+..+......+++.+|-
T Consensus       241 ~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEec
Confidence            9999999888778889999996

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.34  E-value=0.037  Score=41.36  Aligned_cols=195  Identities=14%  Similarity=0.210  Sum_probs=111.7

Q ss_pred             EEEECCCCC-EEEEEeCCCc-EEEeecCCCcEEEEEeccccc--EEEEEECCCCCEEEEecCC-----CcEEEEeCCCc-
Q psy4391          32 SVKFSPNGE-WLASSSADKL-IKIWGAYDGKFEKTISGHKLG--ISDVAWSSDSRLLVSGSDD-----KTLKIWELSSG-  101 (231)
Q Consensus        32 ~~~~~~~~~-~l~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~-----g~i~~~d~~~~-  101 (231)
                      .++++|.-. -++.+-.-|+ ..++|..+......+...+.+  --.-.|+|||++|++.-.|     |.|-+||...+ 
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            566777544 3445555554 356776655544443321111  1112689999998776543     67999998743 


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeec------------------CCcEEEEECCCCceeeecc----CCCCCeEEE
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSF------------------DESVRIWDVRTGKCLKTLP----AHSDPVSAV  159 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~v~d~~~~~~~~~~~----~~~~~v~~~  159 (231)
                      +.+-.+..+.-....+.+.+||+.++.+..                  .-.+.+.|..+|+.+.+..    .+.-.++.+
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl  231 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL  231 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence            344455566555667889999999887654                  1124455656666554432    223468888


Q ss_pred             EEcCCCCeEEEEecCCeEE-----EEeCCCCceeeeeecCC------CCCeEEEEECCCCCEEEEEeC-CCeEEEEeCC
Q psy4391         160 HFNRDGSLIVSSSYDGLCR-----IWDTASGQCLKTLIDDD------NPPVSFVKFSPNGKYILAATL-DNTLKLWDSY  226 (231)
Q Consensus       160 ~~~~~~~~l~~~~~dg~i~-----v~d~~~~~~~~~~~~~~------~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~~  226 (231)
                      +..+||..++.+-..|.-.     +=-...++.++-+....      ..-+-+++.+.+..+++..+. .+..-+||..
T Consensus       232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~  310 (366)
T COG3490         232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA  310 (366)
T ss_pred             eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence            9999998777665444211     11112222222221111      123556777776677766665 4588889864

>PHA02790 Kelch-like protein; Provisional

Probab=97.30  E-value=0.047  Score=44.90  Aligned_cols=179  Identities=9%  Similarity=0.005  Sum_probs=85.0

Q ss_pred             CCCEEEEEeCCC-----cEEEeecCCCcEEEEE--ecccccEEEEEECCCCCEEEEecCC--CcEEEEeCCCceeee--e
Q psy4391          38 NGEWLASSSADK-----LIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSDD--KTLKIWELSSGKCLK--T  106 (231)
Q Consensus        38 ~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~--g~i~~~d~~~~~~~~--~  106 (231)
                      ++..+++|+.++     .+..||..+......-  ........ ++ .-++...+.|+.+  ..+..||..+.+...  .
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            344556676543     4566777665443221  11111111 11 2356666677653  357778876544322  2


Q ss_pred             ecCCCcceEEEEECCCCCEEEEeecCC---cEEEEECCCCceeee--ccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGSFDE---SVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      +.......  ....-+|.+.+.|+.++   .+..||.++.+....  +....... ++ ..-+++..+.|   |.+.+||
T Consensus       349 l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~G---G~~e~yd  421 (480)
T PHA02790        349 LLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVG---RNAEFYC  421 (480)
T ss_pred             CCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEEC---CceEEec
Confidence            21111111  11223577777777553   467788876653221  11111111 11 12356666665   3467899


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeCC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-----NTLKLWDSY  226 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d-----~~v~vwd~~  226 (231)
                      ..+++.... .....+....-+.--+|+..++|+.+     ..|.+||..
T Consensus       422 p~~~~W~~~-~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        422 ESSNTWTLI-DDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR  470 (480)
T ss_pred             CCCCcEeEc-CCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence            887664322 11111111111123356777777754     467888863

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.25  E-value=0.046  Score=40.59  Aligned_cols=161  Identities=11%  Similarity=0.133  Sum_probs=88.5

Q ss_pred             EEecccccEEEEEECCCCCE-EEEecCCCcEEEEeCCCceeeeeecCC-CcceEEEEECCCCCEEEEeecCCcEEEEECC
Q psy4391          64 TISGHKLGISDVAWSSDSRL-LVSGSDDKTLKIWELSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVR  141 (231)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~~~-l~~~~~~g~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  141 (231)
                      .+.+-...+..++|.|+.+. +++....+.|..++.+ ++.++.+.-. ....-.+.+..++.++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            34444556999999998664 5666677888888864 6666665422 2446677887777777766668889998884


Q ss_pred             CCc------eeeecc-----CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCC---Cceeeee-----e--cCCCCCeE
Q psy4391         142 TGK------CLKTLP-----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTL-----I--DDDNPPVS  200 (231)
Q Consensus       142 ~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~-----~--~~~~~~i~  200 (231)
                      ...      ....+.     .+...+..++|+|.++.|+++-...-..+|.+..   ...+...     .  ......++
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321      011111     2344688999999877777776665555554432   1111111     0  01122357


Q ss_pred             EEEECCCC-CEEEEEeCCCeEEEEeC
Q psy4391         201 FVKFSPNG-KYILAATLDNTLKLWDS  225 (231)
Q Consensus       201 ~~~~s~~g-~~l~~~s~d~~v~vwd~  225 (231)
                      .++++|.. .+++....+..|.++|.
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d~  200 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELDR  200 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE-T
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEECC
Confidence            78888864 45555666778877774

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.24  E-value=0.0017  Score=34.51  Aligned_cols=30  Identities=20%  Similarity=0.252  Sum_probs=27.8

Q ss_pred             CCCeEEEEEcCCCCeEEEEecCCeEEEEeC
Q psy4391         153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (231)
Q Consensus       153 ~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (231)
                      ...|..++|+|...++|.++.+|.|.++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            356899999999999999999999999998

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.17  E-value=0.11  Score=43.33  Aligned_cols=60  Identities=22%  Similarity=0.333  Sum_probs=39.3

Q ss_pred             CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeec
Q psy4391         133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID  193 (231)
Q Consensus       133 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  193 (231)
                      +.|.-+|+.+++............... ..-.+.+++.+..+|.++.+|.++++.+-+...
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            457778888888776654322111111 112445677788899999999999998776544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2079|consensus

Probab=97.16  E-value=0.0028  Score=54.90  Aligned_cols=97  Identities=15%  Similarity=0.206  Sum_probs=70.0

Q ss_pred             CCCEEEEEeCCCcEEEeecCCC-cEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcc---
Q psy4391          38 NGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY---  113 (231)
Q Consensus        38 ~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~---  113 (231)
                      .+-+++.|+..|.+...|.... +....-....++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+   
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            3456788888888887776432 111111223568999999999999999999999999999998888777655433   


Q ss_pred             eEEEEECCCCCEEEEeecCCc
Q psy4391         114 VFCCNFNPQSNLIVSGSFDES  134 (231)
Q Consensus       114 v~~~~~~~~~~~l~~~~~d~~  134 (231)
                      +....+..++..++++...|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc
Confidence            444556666777888887776

>PHA02713 hypothetical protein; Provisional

Probab=97.15  E-value=0.011  Score=49.49  Aligned_cols=146  Identities=8%  Similarity=0.109  Sum_probs=72.7

Q ss_pred             CCCEEEEEeCCC-----cEEEeecCCCcEEEE--EecccccEEEEEECCCCCEEEEecCCC-------------------
Q psy4391          38 NGEWLASSSADK-----LIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSRLLVSGSDDK-------------------   91 (231)
Q Consensus        38 ~~~~l~~~~~dg-----~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~g-------------------   91 (231)
                      +|+..+.|+.++     .+..||..+......  +.........++  -+++..+.|+.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence            345555666543     366777766544321  111111111122  2566666666542                   


Q ss_pred             ----cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCC------cEEEEECCC-Cce--eeeccCCCCCeEE
Q psy4391          92 ----TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVRT-GKC--LKTLPAHSDPVSA  158 (231)
Q Consensus        92 ----~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~v~d~~~-~~~--~~~~~~~~~~v~~  158 (231)
                          .+..||..+.+....-.-...........-++.+.+.|+.++      .+..||.++ .+.  +..+.........
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~  508 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT  508 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence                466788776543221111011111111223466777776542      367899887 443  2223222222222


Q ss_pred             EEEcCCCCeEEEEecCC--eEEEEeCCCCce
Q psy4391         159 VHFNRDGSLIVSSSYDG--LCRIWDTASGQC  187 (231)
Q Consensus       159 ~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~  187 (231)
                      +.+  ++++.++|+.+|  .+..||+.+.+.
T Consensus       509 ~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W  537 (557)
T PHA02713        509 ILH--DNTIMMLHCYESYMLQDTFNVYTYEW  537 (557)
T ss_pred             EEE--CCEEEEEeeecceeehhhcCcccccc
Confidence            222  678888999888  677788777654

>KOG2444|consensus

Probab=97.10  E-value=0.0024  Score=45.72  Aligned_cols=122  Identities=16%  Similarity=0.208  Sum_probs=66.7

Q ss_pred             EEeecccccceEEEEECCC-------CCEEEEEeCCCcEEEeecCC-CcEEEEE-ecccccEEEEEECCCCCEEEEecCC
Q psy4391          20 KFTLAGHTKAVSSVKFSPN-------GEWLASSSADKLIKIWGAYD-GKFEKTI-SGHKLGISDVAWSSDSRLLVSGSDD   90 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~-------~~~l~~~~~dg~i~i~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~   90 (231)
                      .+.+..|...+.+..|...       +..++.|+.+|.|.+|.... +...... .+.......+.-..++.+.++++.+
T Consensus        44 ~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~d  123 (238)
T KOG2444|consen   44 ERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQD  123 (238)
T ss_pred             cchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccC
Confidence            3444445444444333333       34577888899999987631 1111111 1111112222223345578899999


Q ss_pred             CcEEEEeCCCceeeeeecCCC-cceEEEEECCCCCEEEEe--ecCCcEEEEECC
Q psy4391          91 KTLKIWELSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSG--SFDESVRIWDVR  141 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~d~~i~v~d~~  141 (231)
                      |.|+.|+++-.+.+.....|. ........+..+..++..  +.+..++.|++.
T Consensus       124 g~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  124 GRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             CceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            999999998777665555444 333333344445555555  555666666654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.10  E-value=0.0025  Score=33.88  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=27.7

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeec
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGA   56 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~   56 (231)
                      ...|.++.|+|..++||.+..+|.|.+|..
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            356899999999999999999999999987

>PRK13684 Ycf48-like protein; Provisional

Probab=97.08  E-value=0.093  Score=41.00  Aligned_cols=152  Identities=11%  Similarity=0.087  Sum_probs=82.2

Q ss_pred             cccEEEEEECCCCCEEEEecCCCcEEE-EeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceee
Q psy4391          69 KLGISDVAWSSDSRLLVSGSDDKTLKI-WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK  147 (231)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~~g~i~~-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  147 (231)
                      ...+.++.+.|++.+++++ ..|.+.. ++-........-......+..+.+.++++.++.+ ..|.+.+=....+..-.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence            3457788888987666554 4555442 2221111211222234567788888988877665 45655432333443222


Q ss_pred             eccC----CCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeec--CCCCCeEEEEECCCCCEEEEEeCCCeEE
Q psy4391         148 TLPA----HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKYILAATLDNTLK  221 (231)
Q Consensus       148 ~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~~i~~~~~s~~g~~l~~~s~d~~v~  221 (231)
                      ....    ....+.++.+.|++..++++ .+|.+. .....++.......  ........+.+..+++.+++| ..|.|.
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~il  326 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGVLL  326 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCceEE
Confidence            1111    12346788899887765544 566554 33444444333321  112246667776666665554 578888


Q ss_pred             EEeC
Q psy4391         222 LWDS  225 (231)
Q Consensus       222 vwd~  225 (231)
                      .|+-
T Consensus       327 ~~~~  330 (334)
T PRK13684        327 RYVG  330 (334)
T ss_pred             EecC
Confidence            7763

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.04  E-value=0.12  Score=41.58  Aligned_cols=113  Identities=20%  Similarity=0.252  Sum_probs=69.8

Q ss_pred             EEEEEECCCCCEEEEe-cCCC----cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCC-----------cE
Q psy4391          72 ISDVAWSSDSRLLVSG-SDDK----TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-----------SV  135 (231)
Q Consensus        72 v~~~~~~~~~~~l~~~-~~~g----~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~i  135 (231)
                      +....++|+++++|.+ +..|    .++++|+++++.+...-... ....+.|.++++.++....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3457889999988754 3333    59999999987654321111 122389999988776665333           37


Q ss_pred             EEEECCCCcee--eeccCCCC-C-eEEEEEcCCCCeEEEEecC----CeEEEEeCCCC
Q psy4391         136 RIWDVRTGKCL--KTLPAHSD-P-VSAVHFNRDGSLIVSSSYD----GLCRIWDTASG  185 (231)
Q Consensus       136 ~v~d~~~~~~~--~~~~~~~~-~-v~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~  185 (231)
                      +.|.+.+...-  ..+..... . ...+..++|+++++.....    ..+.+.|+..+
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            77887766432  22332222 2 5678889999988754432    35778888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.02  E-value=0.087  Score=39.59  Aligned_cols=160  Identities=11%  Similarity=0.143  Sum_probs=96.3

Q ss_pred             EecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCC-CcceEEEEECCCCCEEEEeecCCcEEEEECCCC
Q psy4391          65 ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG  143 (231)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  143 (231)
                      +.+....+.++.|+|+.+.|++......-.++=...|+.++.+.-. -...-.+.+-.++++.++--.++.+.++.+...
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3444556999999999999988887777666666668877766421 122335677777888887778888888877655


Q ss_pred             ceeeec----------cCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCc-eee-eeecC--C-----CCCeEEEEE
Q psy4391         144 KCLKTL----------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLK-TLIDD--D-----NPPVSFVKF  204 (231)
Q Consensus       144 ~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~-~~~~~--~-----~~~i~~~~~  204 (231)
                      ..+...          .........++|+|....|..+-...=+.+|...... .+. .....  .     -..++.+.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            322111          1113456789999988888777666655555443221 000 00000  0     112455667


Q ss_pred             CCC-CCEEEEEeCCCeEEEEe
Q psy4391         205 SPN-GKYILAATLDNTLKLWD  224 (231)
Q Consensus       205 s~~-g~~l~~~s~d~~v~vwd  224 (231)
                      ++. +.+|+.+.+++.+.-.|
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd  261 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVD  261 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEe
Confidence            754 44555555566655544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.01  E-value=0.086  Score=39.44  Aligned_cols=146  Identities=16%  Similarity=0.202  Sum_probs=87.0

Q ss_pred             ceEEEEECCCCCEEEEEe-CCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe-CCCcee-ee
Q psy4391          29 AVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE-LSSGKC-LK  105 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d-~~~~~~-~~  105 (231)
                      .+.+.+++++++.++... .++.-.+|-...+....... ....+....|++++...+....+...+++. ...++. ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~  103 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV  103 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence            688999999999877644 23333333333333222222 223677789999988777777677767664 233221 11


Q ss_pred             eecCC--CcceEEEEECCCCCEEEEee---cCCcEEEEECC---CC------ceeeeccCCCCCeEEEEEcCCCCeEEEE
Q psy4391         106 TLKGH--SNYVFCCNFNPQSNLIVSGS---FDESVRIWDVR---TG------KCLKTLPAHSDPVSAVHFNRDGSLIVSS  171 (231)
Q Consensus       106 ~~~~~--~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~---~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~  171 (231)
                      .+...  ...|..+.++|||..++...   .++.|.+--+.   .+      ............+..+.|.+++.+++.+
T Consensus       104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~  183 (253)
T PF10647_consen  104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG  183 (253)
T ss_pred             EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence            22211  12799999999999887765   34666665432   22      0111122224578899999999877766


Q ss_pred             ecCC
Q psy4391         172 SYDG  175 (231)
Q Consensus       172 ~~dg  175 (231)
                      ...+
T Consensus       184 ~~~~  187 (253)
T PF10647_consen  184 RSAG  187 (253)
T ss_pred             CCCC
Confidence            5443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.97  E-value=0.12  Score=41.04  Aligned_cols=142  Identities=11%  Similarity=0.131  Sum_probs=77.3

Q ss_pred             cceEEEEECCCCCEEEEEe-----------CCC-cEEEeecCC--CcE--EEEEecccccEEEEEECCCCCEEEEecCCC
Q psy4391          28 KAVSSVKFSPNGEWLASSS-----------ADK-LIKIWGAYD--GKF--EKTISGHKLGISDVAWSSDSRLLVSGSDDK   91 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~-----------~dg-~i~i~~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g   91 (231)
                      .....++|.++|+++++-.           ..+ .|.+++..+  ++.  ...+.........+++.+++  +++++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence            4567899999999877642           223 677765432  322  23333333446788998888  44444443


Q ss_pred             cEEEEeCCCc-----eee---eeecCC----CcceEEEEECCCCCEEEEeecC-------------------CcEEEEEC
Q psy4391          92 TLKIWELSSG-----KCL---KTLKGH----SNYVFCCNFNPQSNLIVSGSFD-------------------ESVRIWDV  140 (231)
Q Consensus        92 ~i~~~d~~~~-----~~~---~~~~~~----~~~v~~~~~~~~~~~l~~~~~d-------------------~~i~v~d~  140 (231)
                      ..++.+....     +..   ..+...    ......+.+.|+|.+.++-+..                   +.+.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3334354321     111   112211    2335678899999877655421                   34555555


Q ss_pred             CCCceeeeccCCCCCeEEEEEcCCCCeEEEEe
Q psy4391         141 RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus       141 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      ..++. ..+...-.-...++|+|+|+++++-.
T Consensus       172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence            54432 22222222345789999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.97  E-value=0.1  Score=43.92  Aligned_cols=107  Identities=16%  Similarity=0.319  Sum_probs=69.4

Q ss_pred             EEECCCCCEEEEeecCCcEEEEECCCCceeeecc-CCCCCeEEEEEc--CCCCeEEEEecCCeEEEEeCC-----C----
Q psy4391         117 CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFN--RDGSLIVSSSYDGLCRIWDTA-----S----  184 (231)
Q Consensus       117 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~v~d~~-----~----  184 (231)
                      +.-+.-++..+..+....+.+||.+.+....... ...+.|..+.|.  |+++.+++.+....|.+|.-.     +    
T Consensus        35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~  114 (631)
T PF12234_consen   35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS  114 (631)
T ss_pred             EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence            3334444444444455679999999876433222 346789999885  789999999999999988531     1    


Q ss_pred             Cceeeee--ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         185 GQCLKTL--IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       185 ~~~~~~~--~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ...++.+  ......+|....|-++|.+++++  ++++.|+|.
T Consensus       115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             cceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            1122222  22233567788999999766544  578999884

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.89  E-value=0.15  Score=40.37  Aligned_cols=142  Identities=13%  Similarity=0.109  Sum_probs=76.2

Q ss_pred             ccEEEEEECCCCCEEEEec-----------CCC-cEEEEeCCC--ce--eeeeecCCCcceEEEEECCCCCEEEEeecCC
Q psy4391          70 LGISDVAWSSDSRLLVSGS-----------DDK-TLKIWELSS--GK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE  133 (231)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~-----------~~g-~i~~~d~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  133 (231)
                      .....++|.++|+.+++-.           ..+ .|.+++-.+  +.  ....+.........+.+.+++ +++ +....
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            3456789999998776642           223 666665432  22  122333333445678888888 444 34433


Q ss_pred             cEEEEECCCC-----c---eeeeccCC----CCCeEEEEEcCCCCeEEEEecC-------------------CeEEEEeC
Q psy4391         134 SVRIWDVRTG-----K---CLKTLPAH----SDPVSAVHFNRDGSLIVSSSYD-------------------GLCRIWDT  182 (231)
Q Consensus       134 ~i~v~d~~~~-----~---~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~v~d~  182 (231)
                      ..++.|....     +   .+..+...    ......++|.|||.+.++.+..                   |.+.-+|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3334354321     1   11122221    2346688999999876654421                   44555666


Q ss_pred             CCCceeeeeecCCCCCeEEEEECCCCCEEEEEe
Q psy4391         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       183 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                      .+++. ..+.... .....++|+|+|+++++-.
T Consensus       172 dg~~~-e~~a~G~-rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKL-RVVAHGF-QNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeE-EEEecCc-CCCccceECCCCCEEEEcc
Confidence            65442 2222222 2235689999998876543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.76  E-value=0.15  Score=38.48  Aligned_cols=138  Identities=23%  Similarity=0.238  Sum_probs=78.6

Q ss_pred             CCCCEEEEecCCCcEEEEeCCC-ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec--------
Q psy4391          79 SDSRLLVSGSDDKTLKIWELSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL--------  149 (231)
Q Consensus        79 ~~~~~l~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--------  149 (231)
                      ..++.|+.|+.+| +.+++... ....+...  ...|..+..-|+-+.+++-+ |+.++++++..-......        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3577899998888 88999833 23333222  23388888888777666554 499999998754432211        


Q ss_pred             ------cCCCCCeEEEE--EcCCCCeEEEEecCCeEEEEeCCCC-----ceeeeeecCCCCCeEEEEECCCCCEEEEEeC
Q psy4391         150 ------PAHSDPVSAVH--FNRDGSLIVSSSYDGLCRIWDTASG-----QCLKTLIDDDNPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       150 ------~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~  216 (231)
                            ......+...+  -.+.+...++......|.+|.....     +..+++...  ..+..++|.  ++.++.|..
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~~~  156 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVGTS  156 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEEeC
Confidence                  11122333333  1123444444445568888766542     334444333  345677777  456777764


Q ss_pred             CCeEEEEeC
Q psy4391         217 DNTLKLWDS  225 (231)
Q Consensus       217 d~~v~vwd~  225 (231)
                      + ...+.|.
T Consensus       157 ~-~f~~idl  164 (275)
T PF00780_consen  157 K-GFYLIDL  164 (275)
T ss_pred             C-ceEEEec
Confidence            3 4555554

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.73  E-value=0.05  Score=43.46  Aligned_cols=91  Identities=15%  Similarity=0.316  Sum_probs=65.9

Q ss_pred             cceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEEC----CCC----------
Q psy4391          16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS----SDS----------   81 (231)
Q Consensus        16 ~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~----~~~----------   81 (231)
                      .....+.+.+....+.++..+|++++.|+...-|.|.++|...+...+.+++....-  +.|.    +..          
T Consensus       296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~  373 (415)
T PF14655_consen  296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPK  373 (415)
T ss_pred             ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccC
Confidence            344667777888899999999999998888878999999998887777777654331  1221    111          


Q ss_pred             ------C-EEEEecCCCcEEEEeCCCceeeeeec
Q psy4391          82 ------R-LLVSGSDDKTLKIWELSSGKCLKTLK  108 (231)
Q Consensus        82 ------~-~l~~~~~~g~i~~~d~~~~~~~~~~~  108 (231)
                            . .++.+-.-|.|.+|.+.++..+..+.
T Consensus       374 ~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  374 SSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             CCCcceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence                  1 23456778899999998877665554

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.68  E-value=0.17  Score=37.82  Aligned_cols=194  Identities=14%  Similarity=0.153  Sum_probs=117.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee-e
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK-T  106 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~-~  106 (231)
                      ..-..++-++||..-+++...|.|=-.|..+++....-.+.......+..-|||...++-+.. .|.-.|.++.+..+ .
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~  140 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP  140 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence            344567778888777777777777667777777666555555566778888998877665544 44445665544221 1


Q ss_pred             e--cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccC-CCCCeEEEEEcCCCCeEEEEecCCeEEEEeCC
Q psy4391         107 L--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (231)
Q Consensus       107 ~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (231)
                      +  +..........|++.|++.+++...-. --.|...+ .++.+.. .....+.|+..|+|...++.-.+..|-..|..
T Consensus       141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~y-GrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~  218 (353)
T COG4257         141 LPLEHADANLETAVFDPWGNLWFTGQIGAY-GRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF  218 (353)
T ss_pred             cccccCCCcccceeeCCCccEEEeeccccc-eecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence            1  122344566789999999998763211 01121111 1222221 22345678889999988887778888888887


Q ss_pred             CCceeeeeecCC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         184 SGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       184 ~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .+.. ..+....  ......+--+|.|+.-++....+.+..||.
T Consensus       219 ~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdP  261 (353)
T COG4257         219 AGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDP  261 (353)
T ss_pred             cCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCc
Confidence            7632 2222111  112233445777887777666777777775

>KOG3630|consensus

Probab=96.66  E-value=0.055  Score=47.71  Aligned_cols=183  Identities=14%  Similarity=0.102  Sum_probs=99.3

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEeecC-------CCcEE---------EEEec-ccccEEEEEECCCCCEEE--EecCCCc
Q psy4391          32 SVKFSPNGEWLASSSADKLIKIWGAY-------DGKFE---------KTISG-HKLGISDVAWSSDSRLLV--SGSDDKT   92 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg~i~i~~~~-------~~~~~---------~~~~~-~~~~v~~~~~~~~~~~l~--~~~~~g~   92 (231)
                      .++.++...++++++..+.+.++...       ++...         ..+.- ....+..+...+|+...+  ....+-.
T Consensus        46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~  125 (1405)
T KOG3630|consen   46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA  125 (1405)
T ss_pred             hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence            45556655666666666666665421       11100         11111 123445555666755433  3334447


Q ss_pred             EEEEeCCCceee-----eeec------CCCcceEEEEECCCCC-EEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEE
Q psy4391          93 LKIWELSSGKCL-----KTLK------GHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVH  160 (231)
Q Consensus        93 i~~~d~~~~~~~-----~~~~------~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~  160 (231)
                      |..||+++....     ..+.      .......++.|+|.-. ..+....|+.|++..+........-.......++++
T Consensus       126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~  205 (1405)
T KOG3630|consen  126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVL  205 (1405)
T ss_pred             EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEE
Confidence            889998753211     1111      1223345677887532 234456777777776543222111112345678999


Q ss_pred             EcCCCCeEEEEecCCeEEEEeCCCC--ceeeeeecCCCCCeEEEEECCCCCEEEEE
Q psy4391         161 FNRDGSLIVSSSYDGLCRIWDTASG--QCLKTLIDDDNPPVSFVKFSPNGKYILAA  214 (231)
Q Consensus       161 ~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  214 (231)
                      |+|.|+.++.|-..|++.-|-..-.  ..+..........|.++.|-....+|++-
T Consensus       206 WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  206 WSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             eccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence            9999999999999999988855322  11111112223457778887666666553

>PHA03098 kelch-like protein; Provisional

Probab=96.60  E-value=0.079  Score=44.24  Aligned_cols=146  Identities=15%  Similarity=0.154  Sum_probs=68.4

Q ss_pred             CCCEEEEEeCC-----CcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCC------CcEEEEeCCCceee
Q psy4391          38 NGEWLASSSAD-----KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD------KTLKIWELSSGKCL  104 (231)
Q Consensus        38 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~------g~i~~~d~~~~~~~  104 (231)
                      +++..+.|+.+     ..+..||..+.+....-.  ...... +++ .-+++..+.|+.+      ..+..||..+.+..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            45555666654     246667766554432211  111111 111 2245666666632      35788898775432


Q ss_pred             eeecCCCcceEEEEECCCCCEEEEeecCC--------cEEEEECCCCceeee--ccCCCCCeEEEEEcCCCCeEEEEecC
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDE--------SVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      ..-..............++.+++.|+.+.        .+..||..+++....  +.........+.+  +++.++.|+.+
T Consensus       420 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~  497 (534)
T PHA03098        420 KGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK  497 (534)
T ss_pred             ecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence            21110000001111223556666666432        378889887653221  1111111112222  56666677654


Q ss_pred             -----CeEEEEeCCCCce
Q psy4391         175 -----GLCRIWDTASGQC  187 (231)
Q Consensus       175 -----g~i~v~d~~~~~~  187 (231)
                           ..+.+||+.+.+.
T Consensus       498 ~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        498 YEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             CCcccceeEEEeCCCCEE
Confidence                 3677788776653

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.57  E-value=0.17  Score=41.74  Aligned_cols=149  Identities=12%  Similarity=0.224  Sum_probs=81.1

Q ss_pred             ccEEEEEECCCCCEEEEec--CCCcEEEEeCCCceeeeeecCCCcceEEEEECCCC----CEEEEeecCCcEEEEECCC-
Q psy4391          70 LGISDVAWSSDSRLLVSGS--DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIWDVRT-  142 (231)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~--~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~v~d~~~-  142 (231)
                      .++..++|....+.+++.-  .+|.+++=|.   ..+    ++-+.|..+.|.|-+    ..+...-....|.||.+.- 
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            4678899985444444432  2333332221   111    233457788998853    2455556678899998752 


Q ss_pred             ----Cceeeecc-CC--CCCe--EEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEE
Q psy4391         143 ----GKCLKTLP-AH--SDPV--SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA  213 (231)
Q Consensus       143 ----~~~~~~~~-~~--~~~v--~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  213 (231)
                          .+.+..-. ..  .-++  ....|+|....|++-.....-.+++.+......+.--....-|.+.+|.+||+.|++
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV  172 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV  172 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence                11111100 00  1111  235799988888765544333344544322222222234556888999999998776


Q ss_pred             EeCC-CeEEEEeC
Q psy4391         214 ATLD-NTLKLWDS  225 (231)
Q Consensus       214 ~s~d-~~v~vwd~  225 (231)
                      +-.. =.-.|||.
T Consensus       173 AvGSsLHSyiWd~  185 (671)
T PF15390_consen  173 AVGSSLHSYIWDS  185 (671)
T ss_pred             EeCCeEEEEEecC
Confidence            5533 26678884

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.52  E-value=0.022  Score=29.42  Aligned_cols=32  Identities=25%  Similarity=0.340  Sum_probs=26.4

Q ss_pred             CCeEEEEEcCCC---CeEEEEecCCeEEEEeCCCC
Q psy4391         154 DPVSAVHFNRDG---SLIVSSSYDGLCRIWDTASG  185 (231)
Q Consensus       154 ~~v~~~~~~~~~---~~l~~~~~dg~i~v~d~~~~  185 (231)
                      ++++++.|+|++   .+|+.+-.-|.+.++|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   48888888899999999853

It contains a characteristic DLL sequence motif.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.52  E-value=0.21  Score=42.09  Aligned_cols=126  Identities=15%  Similarity=0.211  Sum_probs=80.8

Q ss_pred             CCccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe-cccccEEEEEEC--CCCCEEEEecC
Q psy4391          13 PKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWS--SDSRLLVSGSD   89 (231)
Q Consensus        13 ~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~   89 (231)
                      .+..+....++..-....+-+.-+.-++..++-+....+.|||...+....... .....|.++.|.  |+++.+++.+-
T Consensus        15 ~~~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf   94 (631)
T PF12234_consen   15 NKIEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGF   94 (631)
T ss_pred             CeEEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEc
Confidence            445566666665444455666666655554454445689999998776544332 345679999885  78999999999


Q ss_pred             CCcEEEEeCCC---------ceeeeee--cCCC-cceEEEEECCCCCEEEEeecCCcEEEEEC
Q psy4391          90 DKTLKIWELSS---------GKCLKTL--KGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDV  140 (231)
Q Consensus        90 ~g~i~~~d~~~---------~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  140 (231)
                      .+.|.+|....         ...++.+  ..+. .+|.+..|.++|.+++..+  ..+.++|-
T Consensus        95 ~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen   95 PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            99999885421         1122222  2222 4677888999988877554  35777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.51  E-value=0.39  Score=40.08  Aligned_cols=188  Identities=14%  Similarity=0.104  Sum_probs=108.7

Q ss_pred             CCEEEEEeCCCcEEEeecCCCcEEEEEeccc-ccEEE----------EEECCCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy4391          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISD----------VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        39 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~  107 (231)
                      +..++.++.++.|.-.|..+++..-...... ..+..          ++.  .+..++.++.++.+.-+|.++++.+-..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4566777778888888988887766554211 11110          111  2346777888999999999999876554


Q ss_pred             cCCCcc-eEEEEECC--CCCEEEEee------cCCcEEEEECCCCceeeeccCCCC------------------------
Q psy4391         108 KGHSNY-VFCCNFNP--QSNLIVSGS------FDESVRIWDVRTGKCLKTLPAHSD------------------------  154 (231)
Q Consensus       108 ~~~~~~-v~~~~~~~--~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~~------------------------  154 (231)
                      ...... -..+.-+|  .+..++.+.      .+|.|..+|.++|+.+..+.....                        
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            321100 00011112  123444443      268899999999987765432111                        


Q ss_pred             -------Ce-EEEEEcCCCCeEEEEec-----CC-----------eEEEEeCCCCceeeeeecCC--------CCCeEEE
Q psy4391         155 -------PV-SAVHFNRDGSLIVSSSY-----DG-----------LCRIWDTASGQCLKTLIDDD--------NPPVSFV  202 (231)
Q Consensus       155 -------~v-~~~~~~~~~~~l~~~~~-----dg-----------~i~v~d~~~~~~~~~~~~~~--------~~~i~~~  202 (231)
                             .+ ..+.++|...+++.+..     ++           .|.-.|+++++..=.++..+        ..+...+
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~  306 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF  306 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence                   11 13466666666655541     12           56677888888643332211        1112234


Q ss_pred             EECCCCC---EEEEEeCCCeEEEEeCCCC
Q psy4391         203 KFSPNGK---YILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       203 ~~s~~g~---~l~~~s~d~~v~vwd~~~~  228 (231)
                      ....+|+   .|+.++.+|.+.+.|....
T Consensus       307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG  335 (527)
T TIGR03075       307 DLKKDGKPRKLLAHADRNGFFYVLDRTNG  335 (527)
T ss_pred             EeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence            4445776   7788999999999997543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.45  E-value=0.32  Score=40.26  Aligned_cols=147  Identities=16%  Similarity=0.296  Sum_probs=83.6

Q ss_pred             ceEEEEECCCCCEEE-EEe--CCCcEEEeecCCCcEEEEEecccccEEEEEECCC----CCEEEEecCCCcEEEEeCCC-
Q psy4391          29 AVSSVKFSPNGEWLA-SSS--ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD----SRLLVSGSDDKTLKIWELSS-  100 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~-~~~--~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~g~i~~~d~~~-  100 (231)
                      ++..++|. ||+.++ +.-  .+|.+++=|       ...-+.-..|..+.|.|-    ...+++......|.+|.+.. 
T Consensus        21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGd-------s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGD-------SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             cccceEec-CCCEEEEEeeeeeCCccccCC-------ccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            67889996 666543 321  233333211       112233345888999984    33466666677999998752 


Q ss_pred             ----ceeee----eecCC-CcceEEEEECCCCCEEEEeecCCcEEEEECCCCc-eeeeccCCCCCeEEEEEcCCCCeEEE
Q psy4391         101 ----GKCLK----TLKGH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSLIVS  170 (231)
Q Consensus       101 ----~~~~~----~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~  170 (231)
                          .+.+.    .+... .--...|.|+|....|+.-.....-.+++++... .++.--...+.|-|.+|.+||+.|++
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV  172 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV  172 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence                12111    11110 0012357799998888766554443455554332 22222244678999999999998765


Q ss_pred             Ee-cCCeEEEEeCC
Q psy4391         171 SS-YDGLCRIWDTA  183 (231)
Q Consensus       171 ~~-~dg~i~v~d~~  183 (231)
                      +- ..=.-++||-.
T Consensus       173 AvGSsLHSyiWd~~  186 (671)
T PF15390_consen  173 AVGSSLHSYIWDSA  186 (671)
T ss_pred             EeCCeEEEEEecCc
Confidence            53 33456688754

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.43  E-value=0.35  Score=38.68  Aligned_cols=183  Identities=16%  Similarity=0.223  Sum_probs=86.7

Q ss_pred             EEECCCCCEEEE--EeCC----CcEEEeecCCCcEEEEEecccc---cEEEEEECCCCCEEEEecC--------------
Q psy4391          33 VKFSPNGEWLAS--SSAD----KLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSRLLVSGSD--------------   89 (231)
Q Consensus        33 ~~~~~~~~~l~~--~~~d----g~i~i~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~--------------   89 (231)
                      +.--|+|+.+++  |+.+    |.+.++|.++............   --.++-|.|..+.+++..-              
T Consensus       135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d  214 (461)
T PF05694_consen  135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED  214 (461)
T ss_dssp             EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred             eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence            344578887765  3444    3567777776665555543221   1345667777777776531              


Q ss_pred             ------CCcEEEEeCCCceeeeeecCCC--cceEEEEE--CCCCCEEEEeec-CCcEEEE-ECCCCce----eeec----
Q psy4391          90 ------DKTLKIWELSSGKCLKTLKGHS--NYVFCCNF--NPQSNLIVSGSF-DESVRIW-DVRTGKC----LKTL----  149 (231)
Q Consensus        90 ------~g~i~~~d~~~~~~~~~~~~~~--~~v~~~~~--~~~~~~l~~~~~-d~~i~v~-d~~~~~~----~~~~----  149 (231)
                            ...+.+||+.+.+.++.+.-..  .....+.|  +|+..+-++++. .+.|..| ....++.    +-.+    
T Consensus       215 ~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~  294 (461)
T PF05694_consen  215 LEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK  294 (461)
T ss_dssp             HHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred             hhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence                  3479999999999888886443  22344555  555555444432 3344433 3233321    1111    


Q ss_pred             -------------cCCCCCeEEEEEcCCCCeEEEEe-cCCeEEEEeCCCCce---eeeeecCCC---------------C
Q psy4391         150 -------------PAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQC---LKTLIDDDN---------------P  197 (231)
Q Consensus       150 -------------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~---~~~~~~~~~---------------~  197 (231)
                                   .+-..-++.+.+|.|.++|...+ ..|.++.||+..-..   ..++.....               .
T Consensus       295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~G  374 (461)
T PF05694_consen  295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRG  374 (461)
T ss_dssp             --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S
T ss_pred             cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCC
Confidence                         11134578899999999988666 579999999876432   222221100               1


Q ss_pred             CeEEEEECCCCCEEEEEe
Q psy4391         198 PVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       198 ~i~~~~~s~~g~~l~~~s  215 (231)
                      ....+..|-||+.|+..+
T Consensus       375 gPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  375 GPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ----EEE-TTSSEEEEE-
T ss_pred             CCCeEEEccCCeEEEEEe
Confidence            124577899999887765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.42  E-value=0.32  Score=38.02  Aligned_cols=149  Identities=11%  Similarity=0.124  Sum_probs=80.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEE-eecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      ..+..+.+.+++.+++++ ..|.+.. ++................+.++.+.++++.++++ ..|.+++=..+.+..-..
T Consensus       173 g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~  250 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK  250 (334)
T ss_pred             ceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence            457888888888766554 4565543 2211112333333344568889999998876654 556664322333332221


Q ss_pred             ecC----CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc---CCCCCeEEEEEcCCCCeEEEEecCCeEEE
Q psy4391         107 LKG----HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP---AHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (231)
Q Consensus       107 ~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  179 (231)
                      ...    ....+..+.+.+++..++.+ .+|.+. .....++.-....   .-......+.|..+++.+++ +..|.|..
T Consensus       251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~  327 (334)
T PRK13684        251 PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLR  327 (334)
T ss_pred             ccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEE
Confidence            111    11236677888887766554 456543 3334444322222   11234667777766666554 45777766


Q ss_pred             Ee
Q psy4391         180 WD  181 (231)
Q Consensus       180 ~d  181 (231)
                      ++
T Consensus       328 ~~  329 (334)
T PRK13684        328 YV  329 (334)
T ss_pred             ec
Confidence            64

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.23  E-value=0.73  Score=40.24  Aligned_cols=189  Identities=16%  Similarity=0.201  Sum_probs=107.9

Q ss_pred             CCEEEEEeCCCcEEEeecCCCcEEEEEecccc--------cEEEEEEC----------------CCCCEEEEecCCCcEE
Q psy4391          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKL--------GISDVAWS----------------SDSRLLVSGSDDKTLK   94 (231)
Q Consensus        39 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~--------~v~~~~~~----------------~~~~~l~~~~~~g~i~   94 (231)
                      +..++.++.++.|.-.|..+++..-.+.....        ....+++.                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            55677778888888888888877665542111        01122221                1334788888899999


Q ss_pred             EEeCCCceeeeeecCCCcce-------------EEEEECC--CCCEEEEeec----------CCcEEEEECCCCceeeec
Q psy4391          95 IWELSSGKCLKTLKGHSNYV-------------FCCNFNP--QSNLIVSGSF----------DESVRIWDVRTGKCLKTL  149 (231)
Q Consensus        95 ~~d~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------d~~i~v~d~~~~~~~~~~  149 (231)
                      -.|.++++....+... ..+             ....-.|  .+..++.|+.          +|.|+-+|.++|+.+..+
T Consensus       274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            9999999877554321 111             0011112  1345555542          578999999999987765


Q ss_pred             cCC---------CC--------Ce-EEEEEcCCCCeEEEEe------------------cCCeEEEEeCCCCceeeeeec
Q psy4391         150 PAH---------SD--------PV-SAVHFNRDGSLIVSSS------------------YDGLCRIWDTASGQCLKTLID  193 (231)
Q Consensus       150 ~~~---------~~--------~v-~~~~~~~~~~~l~~~~------------------~dg~i~v~d~~~~~~~~~~~~  193 (231)
                      ...         .+        .+ ..++++++..+++.+.                  ..+.|.-.|+++++..=.+..
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            421         00        00 2344555444433321                  234566778888875433322


Q ss_pred             CCC--------CCeEEEEECC-CCC---EEEEEeCCCeEEEEeCCCC
Q psy4391         194 DDN--------PPVSFVKFSP-NGK---YILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       194 ~~~--------~~i~~~~~s~-~g~---~l~~~s~d~~v~vwd~~~~  228 (231)
                      .+.        .+...+.+.- +|+   .++.++.+|.+.++|....
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG  479 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG  479 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence            110        1112233333 663   7899999999999997544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.08  E-value=0.43  Score=38.94  Aligned_cols=142  Identities=15%  Similarity=0.194  Sum_probs=82.0

Q ss_pred             CCCCEEEE-EeCCCcEEEeecCCCcEEEEEecccccEEEEEECCC--------CCEEEEecCCCcEEEEeCCC-ceeeee
Q psy4391          37 PNGEWLAS-SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD--------SRLLVSGSDDKTLKIWELSS-GKCLKT  106 (231)
Q Consensus        37 ~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~l~~~~~~g~i~~~d~~~-~~~~~~  106 (231)
                      .+..+|+. |+....++-.|++-|+.+..+..+...  -+.+.|.        .+.|+-.+. ..|.-.|.+- +..+..
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~-~svFrIDPR~~gNKi~v  553 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSD-YSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecc-cceEEecccccCCceee
Confidence            34445443 555566777777778777777665433  3456553        233444444 3444445442 222211


Q ss_pred             ecCCCcceEEEEEC----CCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeC
Q psy4391         107 LKGHSNYVFCCNFN----PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (231)
Q Consensus       107 ~~~~~~~v~~~~~~----~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (231)
                      .. .......-.|+    ....++|.++..|.|++||--..+....+++-...|..+..+.+|+++++.+. ..+.+-|+
T Consensus       554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence            11 11222222232    35678999999999999995433333345555678888889999998877663 45556665


Q ss_pred             C
Q psy4391         183 A  183 (231)
Q Consensus       183 ~  183 (231)
                      +
T Consensus       632 ~  632 (776)
T COG5167         632 P  632 (776)
T ss_pred             c
Confidence            3

>PHA02790 Kelch-like protein; Provisional

Probab=96.08  E-value=0.38  Score=39.67  Aligned_cols=144  Identities=10%  Similarity=0.055  Sum_probs=64.0

Q ss_pred             CCCEEEEEeCC--CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCC---cEEEEeCCCceeeeeecCCCc
Q psy4391          38 NGEWLASSSAD--KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK---TLKIWELSSGKCLKTLKGHSN  112 (231)
Q Consensus        38 ~~~~l~~~~~d--g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~d~~~~~~~~~~~~~~~  112 (231)
                      ++...+.|+.+  ..+..|+..+......-.-...........-+++..+.|+.++   .+..||.++.+....-.-...
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~  397 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP  397 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence            44555556543  3466677655443221111111111111123566666666543   466788876543321110001


Q ss_pred             ceEEEEECCCCCEEEEeecCCcEEEEECCCCceee--eccCCCCCeEEEEEcCCCCeEEEEecC-----CeEEEEeCCCC
Q psy4391         113 YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYD-----GLCRIWDTASG  185 (231)
Q Consensus       113 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~  185 (231)
                      ........-++.+.+.|+   .+.+||.++.+...  .+.........+.  -+++..+.|+.+     ..+..||..++
T Consensus       398 r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        398 HYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             cccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            001111223455666653   46788887665322  1211111122222  256777777754     24555665544


Q ss_pred             c
Q psy4391         186 Q  186 (231)
Q Consensus       186 ~  186 (231)
                      +
T Consensus       473 ~  473 (480)
T PHA02790        473 S  473 (480)
T ss_pred             e
Confidence            3

>KOG2247|consensus

Probab=96.01  E-value=0.0011  Score=52.67  Aligned_cols=139  Identities=14%  Similarity=0.248  Sum_probs=94.9

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCceeee
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      -..-....|-+.+.-++.++.+..+..||.... ...... ..+...+++|..++..+ +.+...+.+.+||+.+.... 
T Consensus        34 lv~pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-  110 (615)
T KOG2247|consen   34 LVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-  110 (615)
T ss_pred             ccccceeeEecCCCceehhhhhhHHHhhhhhcc-eecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-
Confidence            334445678888777888888888888886432 222222 23446678898887765 45667889999999764321 


Q ss_pred             eec-CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeE
Q psy4391         106 TLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus       106 ~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  168 (231)
                      ++. +....-.-+.|++....++.+...|.+.+++..+.+.+.....|...+.++++.+.+..+
T Consensus       111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi  174 (615)
T KOG2247|consen  111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI  174 (615)
T ss_pred             HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence            121 111111226789988899999999999999988877666666677788888888866543

>KOG4499|consensus

Probab=95.98  E-value=0.41  Score=35.01  Aligned_cols=134  Identities=16%  Similarity=0.200  Sum_probs=79.8

Q ss_pred             ccEEEEEECCCCCEEEEecCC---------CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEE-eecCCcEEEEE
Q psy4391          70 LGISDVAWSSDSRLLVSGSDD---------KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWD  139 (231)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~~~---------g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d  139 (231)
                      .+..+-..+|+|++.+-.-.+         |.++.|-... + +..+...-.--..++|+.+.+.+.. -+.+-.|.-||
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d  186 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-Q-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD  186 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccCC-C-ceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence            345566778999984322221         3344444321 1 1112222222345788877766654 45667787777


Q ss_pred             --CCCCcee-----eeccC---CCC-CeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECC
Q psy4391         140 --VRTGKCL-----KTLPA---HSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP  206 (231)
Q Consensus       140 --~~~~~~~-----~~~~~---~~~-~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~  206 (231)
                        ..+|...     ..++.   .+. ..-.+++.-+|.+.+++-..++|...|+.+++.+.++... ...+++++|--
T Consensus       187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgG  263 (310)
T KOG4499|consen  187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGG  263 (310)
T ss_pred             cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecC
Confidence              5565432     11111   111 1234566778888888888899999999999998887655 56788888853

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.96  E-value=0.22  Score=39.88  Aligned_cols=83  Identities=13%  Similarity=0.234  Sum_probs=56.9

Q ss_pred             cccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEE-EEECCC-C---------------C--EEEEe
Q psy4391          69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC-CNFNPQ-S---------------N--LIVSG  129 (231)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~-~~~~~~-~---------------~--~l~~~  129 (231)
                      ...+..++.+|.+++.++...-|.|.++|+.++..++.+++-.+.-.. +..... .               .  +++-.
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            344778899999998888888899999999999988888865443211 111111 0               1  23345


Q ss_pred             ecCCcEEEEECCCCceeeeccC
Q psy4391         130 SFDESVRIWDVRTGKCLKTLPA  151 (231)
Q Consensus       130 ~~d~~i~v~d~~~~~~~~~~~~  151 (231)
                      -.-|.|.+|.++.|..+..+..
T Consensus       387 prRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEEEe
Confidence            5678899999998876665544

>KOG1897|consensus

Probab=95.93  E-value=1.1  Score=39.53  Aligned_cols=195  Identities=13%  Similarity=0.172  Sum_probs=112.1

Q ss_pred             ceEEEEECCC-CCEEEEEeC----------CCcEEEeecCCCcEEEEEecc--cccEEEEEECCCCCEEEEecCCCcEEE
Q psy4391          29 AVSSVKFSPN-GEWLASSSA----------DKLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSRLLVSGSDDKTLKI   95 (231)
Q Consensus        29 ~i~~~~~~~~-~~~l~~~~~----------dg~i~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~g~i~~   95 (231)
                      +|.++.|..| +.+++.|+.          .|.|.++...+....+.+..+  ++.+.++..- +|+++|.  -+..|++
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrL  852 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRL  852 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEE
Confidence            4566678877 567776642          477888877664444444332  2334444322 4665544  4568999


Q ss_pred             EeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECC--CCceeeec-cCCCCCeEEEEEcCCCCeEEEEe
Q psy4391          96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR--TGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~--~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      |+..+++.++.-..+...+..+...-.+..++.|.--+.+.+.-.+  .|+....- .-+....+++.+-.+ ..++.+.
T Consensus       853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~-d~ylgae  931 (1096)
T KOG1897|consen  853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDD-DTYLGAE  931 (1096)
T ss_pred             EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecC-ceEEeec
Confidence            9999886666655666777888888889999999988887765443  33322221 233456777777644 4444555


Q ss_pred             cCCeEEEEeCCCC--c--------eeeeeec-------CCCCCeEE--EEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         173 YDGLCRIWDTASG--Q--------CLKTLID-------DDNPPVSF--VKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       173 ~dg~i~v~d~~~~--~--------~~~~~~~-------~~~~~i~~--~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .+|.+.+....+-  +        ....+..       .+.+-+..  -..+|-+.-+..|+.+|.|-+--..|
T Consensus       932 ~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i~sl~ 1005 (1096)
T KOG1897|consen  932 NSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGIIVSLP 1005 (1096)
T ss_pred             ccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEEEecC
Confidence            5666655432210  0        0000100       11111221  01245556688899999887765443

>KOG2280|consensus

Probab=95.92  E-value=0.81  Score=39.04  Aligned_cols=173  Identities=14%  Similarity=0.198  Sum_probs=84.5

Q ss_pred             CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee---eecCCCcceEEEEECCCCCE
Q psy4391          49 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK---TLKGHSNYVFCCNFNPQSNL  125 (231)
Q Consensus        49 g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~---~~~~~~~~v~~~~~~~~~~~  125 (231)
                      -.|+||+. .|.....+......+..+.|+.+.. |++...+|.+++|++-......   ........|..+.+..+|-.
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence            35777776 3555444444445788899998765 6677899999999986432111   11222344666666665544


Q ss_pred             EEEeecCCcEEEEECCCCceeeeccC---CCCCeEEEEEcCCCC---eEEEEecCCeEEEEeCCCCceeeeeecCCCCCe
Q psy4391         126 IVSGSFDESVRIWDVRTGKCLKTLPA---HSDPVSAVHFNRDGS---LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV  199 (231)
Q Consensus       126 l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i  199 (231)
                      +.+  .+|.+.+..-.......++..   ..-+-.+-...+++.   .++-....-...++...+..............+
T Consensus       142 vlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~  219 (829)
T KOG2280|consen  142 VLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSV  219 (829)
T ss_pred             EEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceE
Confidence            443  334444433221111222211   111111111112211   111111000001111111111001111122456


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         200 SFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       200 ~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ..+.+||+.++|+.-+.+|.|.+-+.
T Consensus       220 ~ki~VS~n~~~laLyt~~G~i~~vs~  245 (829)
T KOG2280|consen  220 VKISVSPNRRFLALYTETGKIWVVSI  245 (829)
T ss_pred             EEEEEcCCcceEEEEecCCcEEEEec
Confidence            77889999999999999999888764

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.88  E-value=0.52  Score=38.49  Aligned_cols=142  Identities=25%  Similarity=0.321  Sum_probs=82.6

Q ss_pred             CCCCEEE-EecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCC-------EEEEeecCCcEEEEECCCCc-eeeec
Q psy4391          79 SDSRLLV-SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-------LIVSGSFDESVRIWDVRTGK-CLKTL  149 (231)
Q Consensus        79 ~~~~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~v~d~~~~~-~~~~~  149 (231)
                      .+...|+ .++....++-.|++.|+.+-.+..+...  .+.+.|+..       .-+.|-.+..|.-.|.+... .+...
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            3444444 3444456766788888888888776654  345676431       22334445555555655322 12111


Q ss_pred             cCCCCCeEEEEEc----CCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         150 PAHSDPVSAVHFN----RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       150 ~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      . .....+.-.|+    -.+-++|+++..|.|++||--..+ -.+....-+..|..+..+.+|+++++.+. ..+.+-|.
T Consensus       555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             e-ehhccccccccccccccCceEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence            1 11122211222    234589999999999999854332 23333344567888999999999988874 56666653

>KOG3630|consensus

Probab=95.81  E-value=0.13  Score=45.60  Aligned_cols=140  Identities=8%  Similarity=0.046  Sum_probs=81.9

Q ss_pred             ceEEEEECCCCCEEEE--EeCCCcEEEeecCCCcEE-----EEEec------ccccEEEEEECCCC-CEEEEecCCCcEE
Q psy4391          29 AVSSVKFSPNGEWLAS--SSADKLIKIWGAYDGKFE-----KTISG------HKLGISDVAWSSDS-RLLVSGSDDKTLK   94 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~--~~~dg~i~i~~~~~~~~~-----~~~~~------~~~~v~~~~~~~~~-~~l~~~~~~g~i~   94 (231)
                      .|..+...+|+...++  ...+-.|..||+++-...     .-+..      ...-..++.|.|.= ...+++..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            4555566677665433  333447888887543211     11111      11224567887742 2345667788888


Q ss_pred             EEeCCCce-eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc---CC-CCCeEEEEEcCCCCeEE
Q psy4391          95 IWELSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP---AH-SDPVSAVHFNRDGSLIV  169 (231)
Q Consensus        95 ~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~-~~~v~~~~~~~~~~~l~  169 (231)
                      +..+.... .+..+. .....++++|+|.|..++.|...|++.-|...- +....+.   .. ...|.++.|--...+++
T Consensus       182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            77664322 122222 234578999999999999999999998887542 2222221   11 35788898876655554


Q ss_pred             E
Q psy4391         170 S  170 (231)
Q Consensus       170 ~  170 (231)
                      +
T Consensus       260 v  260 (1405)
T KOG3630|consen  260 V  260 (1405)
T ss_pred             E
Confidence            3

>KOG1916|consensus

Probab=95.59  E-value=0.036  Score=47.74  Aligned_cols=116  Identities=12%  Similarity=0.206  Sum_probs=69.0

Q ss_pred             ecccccceEEEEECCCCC-EEEEEeCCCcEEEeecC--CCcEEEEE-----ecccccEEEEEECC---CCCEEEEecCCC
Q psy4391          23 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAY--DGKFEKTI-----SGHKLGISDVAWSS---DSRLLVSGSDDK   91 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~--~~~~~~~~-----~~~~~~v~~~~~~~---~~~~l~~~~~~g   91 (231)
                      +++..+.+-.+.|..... .+.  ..-|.+.+|++.  .|+....+     ......+.-+.|+|   +.-++..+..++
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            345667777777754322 222  234677888863  34332222     22233456667765   556777788889


Q ss_pred             cEEEEeCCCceeeeeecCCCcceEE-----------EEECCCCCEEEEeecCCcEEEEECC
Q psy4391          92 TLKIWELSSGKCLKTLKGHSNYVFC-----------CNFNPQSNLIVSGSFDESVRIWDVR  141 (231)
Q Consensus        92 ~i~~~d~~~~~~~~~~~~~~~~v~~-----------~~~~~~~~~l~~~~~d~~i~v~d~~  141 (231)
                      .+++.+...... ..+.+|...+..           ...+|||+.++.+..||.+++|.+.
T Consensus       206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            999887765332 233344433322           2467888888888888888887764

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.56  E-value=0.19  Score=36.69  Aligned_cols=64  Identities=16%  Similarity=0.418  Sum_probs=47.6

Q ss_pred             EcCCCCeEEEEecCCeEEEEeCCCCceeeee------ec-------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         161 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTL------ID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       161 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~------~~-------~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +..++.++++.+.+|.+++||+.+++.+...      ..       .....|..+.++.+|.-+++-+ +|....|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            4456889999999999999999988754332      11       2445678888999998777665 577888874

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.56  E-value=0.1  Score=26.97  Aligned_cols=31  Identities=32%  Similarity=0.429  Sum_probs=25.9

Q ss_pred             cceEEEEECCC-C--CEEEEEeCCCcEEEeecCC
Q psy4391          28 KAVSSVKFSPN-G--EWLASSSADKLIKIWGAYD   58 (231)
Q Consensus        28 ~~i~~~~~~~~-~--~~l~~~~~dg~i~i~~~~~   58 (231)
                      +.|.+++|+|+ +  ++|+.+...|.+.++|.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46899999974 4  5888888889999999874

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.50  E-value=1.5  Score=38.08  Aligned_cols=71  Identities=18%  Similarity=0.172  Sum_probs=43.2

Q ss_pred             cceEEEEECCCCCEEEEeecCCcEEEEECCCC----------c--eeee-c--------cCCCCCeEEEEEcCC---CCe
Q psy4391         112 NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG----------K--CLKT-L--------PAHSDPVSAVHFNRD---GSL  167 (231)
Q Consensus       112 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~----------~--~~~~-~--------~~~~~~v~~~~~~~~---~~~  167 (231)
                      -.|..+.++|+|.+++..|..| |.|..+...          +  ..+. +        ......|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4577888999999999988865 444444321          0  0000 0        011235666777774   356


Q ss_pred             EEEEecCCeEEEEeCC
Q psy4391         168 IVSSSYDGLCRIWDTA  183 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~  183 (231)
                      |++=+.|+.+++||+.
T Consensus       164 l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDIS  179 (717)
T ss_pred             EEEEecCCEEEEEecC
Confidence            6666777777777774

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG1900|consensus

Probab=94.96  E-value=2.8  Score=38.24  Aligned_cols=138  Identities=16%  Similarity=0.325  Sum_probs=81.2

Q ss_pred             eCCCcEEEeecCCCcEEEEEecccccEEEEE--------ECCCCCEEEEecCCCcEEEEeCCC----cee-----eeeec
Q psy4391          46 SADKLIKIWGAYDGKFEKTISGHKLGISDVA--------WSSDSRLLVSGSDDKTLKIWELSS----GKC-----LKTLK  108 (231)
Q Consensus        46 ~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~~g~i~~~d~~~----~~~-----~~~~~  108 (231)
                      +.|+.+.+|+.+++.....+.+....|..+.        |-|.-++++..+.--.|.++-+..    +..     ...+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            3589999999988665555554444444432        333344555444444555554321    110     01222


Q ss_pred             CCCcceEEEEECCCCCEEEEeecCCcEE--EEECCCC---c-e----------------eeecc-CCCCCeEEEEEcCCC
Q psy4391         109 GHSNYVFCCNFNPQSNLIVSGSFDESVR--IWDVRTG---K-C----------------LKTLP-AHSDPVSAVHFNRDG  165 (231)
Q Consensus       109 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~--v~d~~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~  165 (231)
                      .....+.++....+|+.+++|. ||.++  +|....+   + +                +..+. .+.++|..+.+...-
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            3345577777667777766554 45443  2222221   0 0                11222 446799999999888


Q ss_pred             CeEEEEecCCeEEEEeCCC
Q psy4391         166 SLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~  184 (231)
                      ..+.+=+..|.+.+||+..
T Consensus       255 ~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCceEEEEEccC
Confidence            8899999999999999976

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.78  E-value=2.6  Score=36.96  Aligned_cols=151  Identities=15%  Similarity=0.176  Sum_probs=89.1

Q ss_pred             CCEEEEEeCCCcEEEeecCCCcEEEEEecccccE-------------EEEEECC--CCCEEEEecC----------CCcE
Q psy4391          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI-------------SDVAWSS--DSRLLVSGSD----------DKTL   93 (231)
Q Consensus        39 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------~g~i   93 (231)
                      +.+++.++.|+.+.-.|.++++....+... ..+             ..+.-.|  .+..+++++.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            447788888999999999998877655321 111             0011112  1334555532          5889


Q ss_pred             EEEeCCCceeeeeecCC---------C---------cceEEEEECCCCCEEEEeec------------------CCcEEE
Q psy4391          94 KIWELSSGKCLKTLKGH---------S---------NYVFCCNFNPQSNLIVSGSF------------------DESVRI  137 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~~---------~---------~~v~~~~~~~~~~~l~~~~~------------------d~~i~v  137 (231)
                      +-+|.++++.+-.+...         .         ..-....++++..+++.+..                  .+.|.-
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA  418 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA  418 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence            99999999876554311         0         00022345555555544321                  234666


Q ss_pred             EECCCCceeeeccCCCCC---------eEEEEEcC-CCC---eEEEEecCCeEEEEeCCCCceeee
Q psy4391         138 WDVRTGKCLKTLPAHSDP---------VSAVHFNR-DGS---LIVSSSYDGLCRIWDTASGQCLKT  190 (231)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~---------v~~~~~~~-~~~---~l~~~~~dg~i~v~d~~~~~~~~~  190 (231)
                      .|.++|+....++.....         ..-+.+.. +|+   .++.++.+|.+.++|-++++.+..
T Consensus       419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            788888877766542111         11112222 553   788899999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4460|consensus

Probab=94.77  E-value=1.4  Score=36.18  Aligned_cols=24  Identities=8%  Similarity=0.151  Sum_probs=18.0

Q ss_pred             eEEEEECCCCCEEEEeecCCcEEE
Q psy4391         114 VFCCNFNPQSNLIVSGSFDESVRI  137 (231)
Q Consensus       114 v~~~~~~~~~~~l~~~~~d~~i~v  137 (231)
                      |..+..++.|..++..+.+|.+..
T Consensus       106 V~~vl~s~~GS~VaL~G~~Gi~vM  129 (741)
T KOG4460|consen  106 VYQVLLSPTGSHVALIGIKGLMVM  129 (741)
T ss_pred             EEEEEecCCCceEEEecCCeeEEE
Confidence            455677888998888888886543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.58  E-value=2  Score=34.58  Aligned_cols=147  Identities=17%  Similarity=0.214  Sum_probs=78.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce-----e
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK-----C  103 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~-----~  103 (231)
                      ....+..+++|.+++.+......+-|+.-.......-......+..+.|.+++..++++ ..|.+.. ....++     .
T Consensus       240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~  317 (398)
T PLN00033        240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD  317 (398)
T ss_pred             ceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence            34556677888877775433323334321111122223334568889999998877665 5555543 333332     1


Q ss_pred             eeeecC--CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc---CCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         104 LKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP---AHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       104 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      ......  ....+..+.+.+++..+++| ..|.+... ...|+.-....   .-....+.+.|.++++.+++| .+|.|.
T Consensus       318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il  394 (398)
T PLN00033        318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLL  394 (398)
T ss_pred             eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEE
Confidence            122221  12347778888877766554 55655443 33444322222   223467889988777766655 567664


Q ss_pred             EE
Q psy4391         179 IW  180 (231)
Q Consensus       179 v~  180 (231)
                      -|
T Consensus       395 ~~  396 (398)
T PLN00033        395 RY  396 (398)
T ss_pred             Ee
Confidence            43

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.53  E-value=1.2  Score=32.02  Aligned_cols=179  Identities=12%  Similarity=0.087  Sum_probs=87.7

Q ss_pred             EEEECCCCCEEEEEeCC--CcEEEeecCCCcEEEEEecccccEEEEEECCCCCE-EEEecCCCcEEEEeCCCceeeeeec
Q psy4391          32 SVKFSPNGEWLASSSAD--KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLKIWELSSGKCLKTLK  108 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~d--g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~g~i~~~d~~~~~~~~~~~  108 (231)
                      .+.+. +|.++.+.+.-  ..|++|++.+++...+..-....+..--...-+.. ..-.-.+|.-..+|.++-+.+..+.
T Consensus        50 GL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~  128 (262)
T COG3823          50 GLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS  128 (262)
T ss_pred             ceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence            34443 45555555443  46899999877665443322111111111111222 2334467777888887766554443


Q ss_pred             CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccC--CCCCeE---EEEEcCCCCeEEEEecCCeEEEEeCC
Q psy4391         109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA--HSDPVS---AVHFNRDGSLIVSSSYDGLCRIWDTA  183 (231)
Q Consensus       109 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~---~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (231)
                      -... -..  ...++.-|+.++....++.-|.++......+..  ...+|.   .+.|- +|..+|-.-.+..|...|..
T Consensus       129 y~Ge-GWg--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~  204 (262)
T COG3823         129 YEGE-GWG--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD  204 (262)
T ss_pred             cCCc-cee--eecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence            2221 122  233555566666666777777665443322211  112222   22222 45555444445555555666


Q ss_pred             CCceeeeee-----------cCCCCCeEEEEECCCCCEEEEEe
Q psy4391         184 SGQCLKTLI-----------DDDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       184 ~~~~~~~~~-----------~~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                      +|+.+.-+.           ..+....+.+++.|++..++..+
T Consensus       205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            665443321           11222456789999885554443

>KOG2280|consensus

Probab=94.53  E-value=2.8  Score=36.06  Aligned_cols=156  Identities=11%  Similarity=0.149  Sum_probs=76.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEE-EE--ecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-TI--SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      +.+..+.|+.+.++|+. ..+|.+++|+........ .+  ......|..+.+..+|  ++.-..+|.+.+-+-......
T Consensus        84 ~~lI~mgWs~~eeLI~v-~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~  160 (829)
T KOG2280|consen   84 GELIGMGWSDDEELICV-QKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKL  160 (829)
T ss_pred             CCeeeecccCCceEEEE-eccceEEEeecchhhhcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchh
Confidence            48889999987776655 789999999975332211 11  1223346666666555  344444555554432222112


Q ss_pred             eeecC---CCcceEEE-EECCCCCEEEEeecCCc--EEEEECC--CCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCe
Q psy4391         105 KTLKG---HSNYVFCC-NFNPQSNLIVSGSFDES--VRIWDVR--TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (231)
Q Consensus       105 ~~~~~---~~~~v~~~-~~~~~~~~l~~~~~d~~--i~v~d~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  176 (231)
                      +..+.   ....-.+. .+.|..+....-.-+-.  ..++...  ..+. ..+......+..+.+||+.++|+-=...|.
T Consensus       161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~-~~~~~~~~~~~ki~VS~n~~~laLyt~~G~  239 (829)
T KOG2280|consen  161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQL-HALSWPNSSVVKISVSPNRRFLALYTETGK  239 (829)
T ss_pred             hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccc-cccCCCCceEEEEEEcCCcceEEEEecCCc
Confidence            22211   11110111 12222111111111100  0111111  1111 112222345778899999999998889999


Q ss_pred             EEEEeCCCCce
Q psy4391         177 CRIWDTASGQC  187 (231)
Q Consensus       177 i~v~d~~~~~~  187 (231)
                      +.+-+....+.
T Consensus       240 i~~vs~D~~~~  250 (829)
T KOG2280|consen  240 IWVVSIDLSQI  250 (829)
T ss_pred             EEEEecchhhh
Confidence            88887665443

>PRK10115 protease 2; Provisional

Probab=94.50  E-value=2.9  Score=36.30  Aligned_cols=111  Identities=12%  Similarity=0.072  Sum_probs=65.0

Q ss_pred             ccEEEEEECCCCCEEEEecCC-C----cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecC------CcEEEE
Q psy4391          70 LGISDVAWSSDSRLLVSGSDD-K----TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD------ESVRIW  138 (231)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~~~-g----~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~  138 (231)
                      ..+..+.|+|++++|+.+... |    .|++.|+.+++.+...-....  ..+.|.++++.|+....+      ..|+.+
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            346678899999988765332 2    588889987763222111111  358899998866665432      357778


Q ss_pred             ECCCCc--eeeeccCCCCCeE-EEEEcCCCCeEEEEec---CCeEEEEeC
Q psy4391         139 DVRTGK--CLKTLPAHSDPVS-AVHFNRDGSLIVSSSY---DGLCRIWDT  182 (231)
Q Consensus       139 d~~~~~--~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~v~d~  182 (231)
                      ++.++.  ....+........ ....+.++++++..+.   ++.+.+++.
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            887773  2223332222233 3333447877654443   357888884

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.49  E-value=0.65  Score=33.92  Aligned_cols=70  Identities=17%  Similarity=0.306  Sum_probs=50.0

Q ss_pred             ECCCCCEEEEecCCCcEEEEeCCCceeeeee-------c-------CCCcceEEEEECCCCCEEEEeecCCcEEEEECCC
Q psy4391          77 WSSDSRLLVSGSDDKTLKIWELSSGKCLKTL-------K-------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT  142 (231)
Q Consensus        77 ~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  142 (231)
                      +..++.++++.+.+|.+++||+.+++.+..-       .       .....|..+.++.+|.-+++-+ +|..+.|+...
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4456788999999999999999987654321       1       2345677888888888777655 46788888766


Q ss_pred             Cceee
Q psy4391         143 GKCLK  147 (231)
Q Consensus       143 ~~~~~  147 (231)
                      +.-+.
T Consensus        97 ~~W~~  101 (219)
T PF07569_consen   97 GCWIR  101 (219)
T ss_pred             ceeEE
Confidence            54433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.37  E-value=3.2  Score=36.15  Aligned_cols=75  Identities=28%  Similarity=0.419  Sum_probs=52.1

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecC---------CCcEE---EEE--------ecccccEEEEEECCC---CCE
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAY---------DGKFE---KTI--------SGHKLGISDVAWSSD---SRL   83 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~---------~~~~~---~~~--------~~~~~~v~~~~~~~~---~~~   83 (231)
                      .-.|..+.++|+|++++..|..|...+.-..         .++..   +.+        ......|..+.|+|.   +..
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3478899999999999988887755443211         11111   111        123346888999996   578


Q ss_pred             EEEecCCCcEEEEeCCCc
Q psy4391          84 LVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        84 l~~~~~~g~i~~~d~~~~  101 (231)
                      |+.-..|+.+|+||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            999999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.31  E-value=1.7  Score=32.75  Aligned_cols=154  Identities=13%  Similarity=0.129  Sum_probs=95.9

Q ss_pred             cEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc
Q psy4391          71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP  150 (231)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  150 (231)
                      ....++-.|||...+++...+.|--.|..+++..+.--+.......+...|||...++-+.. -|.-+|-++.. +..+.
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e-vt~f~  140 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE-VTRFP  140 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc-eEEee
Confidence            34567788999988999888888888999888665544444556677888998888776554 34445554433 22221


Q ss_pred             ----CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         151 ----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       151 ----~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                          ..........|++.|.+-+++... .---.|...+ .+..+.......-+.|+..|+|...++.-.++.|-.-|++
T Consensus       141 lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~  218 (353)
T COG4257         141 LPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPF  218 (353)
T ss_pred             cccccCCCcccceeeCCCccEEEeeccc-cceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccc
Confidence                112345667899999988877532 1111122211 1222222222233567889999988887778888877765


Q ss_pred             CC
Q psy4391         227 PC  228 (231)
Q Consensus       227 ~~  228 (231)
                      ..
T Consensus       219 ~~  220 (353)
T COG4257         219 AG  220 (353)
T ss_pred             cC
Confidence            44

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=94.20  E-value=2.1  Score=33.31  Aligned_cols=65  Identities=17%  Similarity=0.220  Sum_probs=34.0

Q ss_pred             CCCEEEEecC-----CCcEEEEeCCCceeeee--ecCCCcceEEEEECCCCCEEEEeecCCc----EEEEECCCCce
Q psy4391          80 DSRLLVSGSD-----DKTLKIWELSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDES----VRIWDVRTGKC  145 (231)
Q Consensus        80 ~~~~l~~~~~-----~g~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~----i~v~d~~~~~~  145 (231)
                      +++..+.|+.     ...+..||+.+.+-...  +... ..........++++.+.|+.++.    +..||.++.+.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            4555566653     23577888876543221  1111 11111222335677777776542    56788887653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.17  E-value=0.61  Score=32.66  Aligned_cols=31  Identities=10%  Similarity=0.218  Sum_probs=25.0

Q ss_pred             cceEEEEECCCC------CEEEEeecCCcEEEEECCC
Q psy4391         112 NYVFCCNFNPQS------NLIVSGSFDESVRIWDVRT  142 (231)
Q Consensus       112 ~~v~~~~~~~~~------~~l~~~~~d~~i~v~d~~~  142 (231)
                      ..+..++|+|.|      -+|++-+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            368899999954      4788889999999998653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.17  E-value=2.1  Score=33.37  Aligned_cols=143  Identities=17%  Similarity=0.313  Sum_probs=79.4

Q ss_pred             ccEEEEEECCCCCEEEEecCCCc------EEEEeCCC--c--eee-----eeecCCCc--------ceEEEEECCCCCEE
Q psy4391          70 LGISDVAWSSDSRLLVSGSDDKT------LKIWELSS--G--KCL-----KTLKGHSN--------YVFCCNFNPQSNLI  126 (231)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~~~g~------i~~~d~~~--~--~~~-----~~~~~~~~--------~v~~~~~~~~~~~l  126 (231)
                      ++...+.+.+++..+++.+++|.      +...++..  +  ..+     ..+....+        ..-++++.+++.++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~   99 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW   99 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence            45677788765555666666666      54444432  0  000     11111111        12356677788888


Q ss_pred             EEeecC------CcEEEEECCCCceeeecc---------------CCCCCeEEEEEcCCCCeEEEEec-----CC--e--
Q psy4391         127 VSGSFD------ESVRIWDVRTGKCLKTLP---------------AHSDPVSAVHFNRDGSLIVSSSY-----DG--L--  176 (231)
Q Consensus       127 ~~~~~d------~~i~v~d~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~-----dg--~--  176 (231)
                      ++.-.+      ..|..++.. |+....+.               .......+|+++|+|+.|+++.+     |+  .  
T Consensus       100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~  178 (326)
T PF13449_consen  100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP  178 (326)
T ss_pred             EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence            777666      778888876 55433321               12346789999999996665543     22  1  


Q ss_pred             -----EE--EEeCCC-Cceeeeeec--C------CCCCeEEEEECCCCCEEEE
Q psy4391         177 -----CR--IWDTAS-GQCLKTLID--D------DNPPVSFVKFSPNGKYILA  213 (231)
Q Consensus       177 -----i~--v~d~~~-~~~~~~~~~--~------~~~~i~~~~~s~~g~~l~~  213 (231)
                           ++  .||..+ ++....+..  .      ....++.+.+-+++++|+.
T Consensus       179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                 34  445554 222222211  1      2345777888888887754

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=94.14  E-value=1.3  Score=32.81  Aligned_cols=138  Identities=17%  Similarity=0.282  Sum_probs=71.1

Q ss_pred             EEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC---CcEEEEeCCCceeeeeecCCC------cceEEEEECCC
Q psy4391          52 KIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---KTLKIWELSSGKCLKTLKGHS------NYVFCCNFNPQ  122 (231)
Q Consensus        52 ~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~d~~~~~~~~~~~~~~------~~v~~~~~~~~  122 (231)
                      .+||..+.+....-.....-+.+-.+.+||+.+.+|+..   ..+++++..+......+....      ..-.....-||
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            467777665433222222223334677899999888752   357777754311111111111      11112334568


Q ss_pred             CCEEEEeecCCc-EEEEECCCC-c-eee-eccC-----CC-CCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeee
Q psy4391         123 SNLIVSGSFDES-VRIWDVRTG-K-CLK-TLPA-----HS-DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL  191 (231)
Q Consensus       123 ~~~l~~~~~d~~-i~v~d~~~~-~-~~~-~~~~-----~~-~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  191 (231)
                      |+.|+.|+.... ..+|.-+.. . ... .+..     .. .----+...|+|++++.+..+..  +||..+++.++.+
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~~n~v~~~l  205 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYKTNTVVRTL  205 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCCCCeEEeeC
Confidence            999998887643 445543211 1 111 0110     00 11113566799999988876544  5788877665554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=93.98  E-value=2.1  Score=32.59  Aligned_cols=153  Identities=12%  Similarity=0.004  Sum_probs=87.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee---
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL---  104 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~---  104 (231)
                      ..+..+.++  +++...+..+.-++|.|+.+......+..-...=..-.|.-.|++...+..+.-+.+.|+.+.+.-   
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~la  164 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLA  164 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence            345566666  456677778888999999876554443221111112345556888888876666667888764321   


Q ss_pred             eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc--CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeC
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (231)
                      ............++.+  |++-..+..|+-+.+.|+.......-+.  .....+..+..+++-.+++..  +--+.+.|.
T Consensus       165 grya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~  240 (370)
T COG5276         165 GRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDV  240 (370)
T ss_pred             eeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEec
Confidence            1121122222334443  5667777889999999987654322211  112367777777765555543  333555666


Q ss_pred             CCCc
Q psy4391         183 ASGQ  186 (231)
Q Consensus       183 ~~~~  186 (231)
                      .+.+
T Consensus       241 s~~s  244 (370)
T COG5276         241 SGPS  244 (370)
T ss_pred             CCCC
Confidence            5544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.50  E-value=2.9  Score=32.70  Aligned_cols=101  Identities=17%  Similarity=0.254  Sum_probs=53.1

Q ss_pred             ceEEEEECCCCCEEEEeecCCcEEEEECCCCce---eeec----cCCCCCeEEEEEcCC---CCeEE-EEecC-------
Q psy4391         113 YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---LKTL----PAHSDPVSAVHFNRD---GSLIV-SSSYD-------  174 (231)
Q Consensus       113 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~-~~~~d-------  174 (231)
                      ..+.++|.|+|+++++ ...|.|++++ ..+..   +..+    .........++++|+   ..+|+ +.+..       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3568899999887765 5599999999 33432   2222    223456788999994   23333 33321       


Q ss_pred             -CeEEEEeCCCC----ceeeee----ec--CCCCCeEEEEECCCCCEEEEEe
Q psy4391         175 -GLCRIWDTASG----QCLKTL----ID--DDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       175 -g~i~v~d~~~~----~~~~~~----~~--~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                       ..|.-|.....    ...+.+    ..  ........|.|.|||.+.++.+
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G  132 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG  132 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence             13333433322    111111    11  1223346699999997665554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.30  E-value=5  Score=34.74  Aligned_cols=102  Identities=16%  Similarity=0.196  Sum_probs=66.4

Q ss_pred             CCCEEEEecCCCcEEEEeCCC-------c----e---------eeeeecCCCcceEEEEEC--CCCCEEEEeecCCcEEE
Q psy4391          80 DSRLLVSGSDDKTLKIWELSS-------G----K---------CLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRI  137 (231)
Q Consensus        80 ~~~~l~~~~~~g~i~~~d~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v  137 (231)
                      +.+.|+.|.+||.|.+|..++       .    +         +...+.. ....+.++++  ...++||.+++...|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEE
Confidence            446788999999999997632       0    0         1111121 2356778887  77889999999888888


Q ss_pred             EECCCC--ce-eeeccCCCCCeEEEEEcCCC---C---eEEEEecCCeEEEEeC
Q psy4391         138 WDVRTG--KC-LKTLPAHSDPVSAVHFNRDG---S---LIVSSSYDGLCRIWDT  182 (231)
Q Consensus       138 ~d~~~~--~~-~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~v~d~  182 (231)
                      |-....  +. ...-..+..-|-+++|-++.   .   .+++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            754331  11 11111244567788887643   2   6778888999988877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=93.18  E-value=2.7  Score=31.27  Aligned_cols=125  Identities=16%  Similarity=0.316  Sum_probs=64.5

Q ss_pred             EEEeCCCceeeeeecCCCcc-eEEEEECCCCCEEEEeec-C--CcEEEEECCC--Cce--ee---eccCCCCCeEEEEEc
Q psy4391          94 KIWELSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSF-D--ESVRIWDVRT--GKC--LK---TLPAHSDPVSAVHFN  162 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~-d--~~i~v~d~~~--~~~--~~---~~~~~~~~v~~~~~~  162 (231)
                      .+||+.+.+. +.+....+. ...-.+-++|+++.+|+. +  ..+++++...  +.+  ..   .+.. ...-......
T Consensus        49 ~~yD~~tn~~-rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~-~RWYpT~~~L  126 (243)
T PF07250_consen   49 VEYDPNTNTF-RPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQS-GRWYPTATTL  126 (243)
T ss_pred             EEEecCCCcE-EeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccC-CCccccceEC
Confidence            4788887653 223222221 112246689999999875 2  3477887644  111  11   1111 1122234557


Q ss_pred             CCCCeEEEEecCC-eEEEEeCCCC-c-eeee-eec-----CCCCCeEEEEECCCCCEEEEEeCCCeE
Q psy4391         163 RDGSLIVSSSYDG-LCRIWDTASG-Q-CLKT-LID-----DDNPPVSFVKFSPNGKYILAATLDNTL  220 (231)
Q Consensus       163 ~~~~~l~~~~~dg-~i~v~d~~~~-~-~~~~-~~~-----~~~~~i~~~~~s~~g~~l~~~s~d~~v  220 (231)
                      |||+.++.|+... ....|..... . .... +..     ....-.-.+..-|+|+.++.+..+..|
T Consensus       127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i  193 (243)
T PF07250_consen  127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSII  193 (243)
T ss_pred             CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEE
Confidence            8999999888774 3344443211 1 1111 111     011112246678999999888765544

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.11  E-value=3.9  Score=32.95  Aligned_cols=146  Identities=15%  Similarity=0.098  Sum_probs=78.4

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc-----eee
Q psy4391          73 SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-----CLK  147 (231)
Q Consensus        73 ~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-----~~~  147 (231)
                      ..+...+++.+++.+.....++-||--...-...-......+..+.+.+++.+++++ ..|.+. +....++     ...
T Consensus       242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~  319 (398)
T PLN00033        242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFE  319 (398)
T ss_pred             eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccccee
Confidence            344566777766665544333334432110011111223457788888888888765 445543 3333332     122


Q ss_pred             eccC--CCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeee--cCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         148 TLPA--HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       148 ~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      ....  ....+..+.+.+++..+++| ..|.+... ...++......  ......+..+.|.++++.+++| .+|.|..|
T Consensus       320 ~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        320 EADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             ecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            2221  12357888898887766555 56765544 34444433322  1223456788888877766665 47887665

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.09  E-value=1.6  Score=30.54  Aligned_cols=31  Identities=13%  Similarity=0.324  Sum_probs=25.2

Q ss_pred             CCeEEEEEcCCC------CeEEEEecCCeEEEEeCCC
Q psy4391         154 DPVSAVHFNRDG------SLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       154 ~~v~~~~~~~~~------~~l~~~~~dg~i~v~d~~~  184 (231)
                      ..+..++|||.|      -+|++.+.+|.+.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378899999954      3688889999999997664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1916|consensus

Probab=93.04  E-value=0.1  Score=45.18  Aligned_cols=114  Identities=15%  Similarity=0.292  Sum_probs=64.0

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEE-----------EECCCCCEEEEecCCCcEEEEeCC-
Q psy4391          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV-----------AWSSDSRLLVSGSDDKTLKIWELS-   99 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~~g~i~~~d~~-   99 (231)
                      .+-|.++.-++..+..++.+++....... ...+.+|...+.++           ..+|||..+++++.||.++.|.+. 
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence            33334455677777778888776543211 12223343333332           368999999999999999888764 


Q ss_pred             ----CceeeeeecCCCcceEEEE-ECCCC---------CEEEEee-cCCcEEEEECCCCcee
Q psy4391         100 ----SGKCLKTLKGHSNYVFCCN-FNPQS---------NLIVSGS-FDESVRIWDVRTGKCL  146 (231)
Q Consensus       100 ----~~~~~~~~~~~~~~v~~~~-~~~~~---------~~l~~~~-~d~~i~v~d~~~~~~~  146 (231)
                          .-.+.+.++.|......|. ++.+.         .++++++ .+..+++|.....+|+
T Consensus       267 ~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  267 TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence                2234455555553222221 22111         2344443 4556888887766654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.00  E-value=3.6  Score=32.24  Aligned_cols=101  Identities=23%  Similarity=0.317  Sum_probs=53.7

Q ss_pred             cEEEEEECCCCCEEEEecCCCcEEEEeCCCcee---eeee----cCCCcceEEEEECCC----CCEEEEeecC-------
Q psy4391          71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC---LKTL----KGHSNYVFCCNFNPQ----SNLIVSGSFD-------  132 (231)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~---~~~~----~~~~~~v~~~~~~~~----~~~l~~~~~d-------  132 (231)
                      ..++|+|.|+|+.++ +...|.|++++ ..+..   +..+    .........++++|+    +.+.+..+..       
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            357899999987665 45699999999 33332   2222    123345788999994    3333333321       


Q ss_pred             -CcEEEEECCCC--c-----ee-eeccC---CCCCeEEEEEcCCCCeEEEEec
Q psy4391         133 -ESVRIWDVRTG--K-----CL-KTLPA---HSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus       133 -~~i~v~d~~~~--~-----~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                       ..|.-|.+..+  .     .+ .....   .......|.|.|||.++++.+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence             13433433322  1     11 11121   2345667999999977666553

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.80  E-value=0.81  Score=36.88  Aligned_cols=158  Identities=12%  Similarity=0.086  Sum_probs=86.4

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEE-Eecc-cc----cEE-EEEECCCCCEEEEecCCCcEEEE-e
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGH-KL----GIS-DVAWSSDSRLLVSGSDDKTLKIW-E   97 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-~~~~-~~----~v~-~~~~~~~~~~l~~~~~~g~i~~~-d   97 (231)
                      --..+..+-..|||++++.-+. ..+.+++..+...... +... .+    .|+ .+..-..|..+++++.||.|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence            3456778899999998876543 6777887654332211 1110 11    111 11122345567888899988877 4


Q ss_pred             CCCc-e----eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe
Q psy4391          98 LSSG-K----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus        98 ~~~~-~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      .... .    .++.++-....+..+.-..+.+-+++-..+|++.++.....+.+-.-.. ...+.-++++|.+.++++- 
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~~~Sp~~~~Ll~e-  375 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLVAMSPNQAYLLSE-  375 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hcCcceeeeCcccchheee-
Confidence            4322 1    1122221122232222222334566667777777765544333222222 2355678899999988764 


Q ss_pred             cCCeEEEEeCCCCc
Q psy4391         173 YDGLCRIWDTASGQ  186 (231)
Q Consensus       173 ~dg~i~v~d~~~~~  186 (231)
                      ..|.++++.+++..
T Consensus       376 ~~gki~~~~l~Nr~  389 (733)
T COG4590         376 DQGKIRLAQLENRN  389 (733)
T ss_pred             cCCceEEEEecCCC
Confidence            45788998887654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=92.53  E-value=5.1  Score=32.84  Aligned_cols=55  Identities=20%  Similarity=0.251  Sum_probs=37.5

Q ss_pred             CcceEEEEECCCCCEEEEeecCCcEEEEECCCCce--eeecc-----CCCCCeEEEEEcCCC
Q psy4391         111 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC--LKTLP-----AHSDPVSAVHFNRDG  165 (231)
Q Consensus       111 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~-----~~~~~v~~~~~~~~~  165 (231)
                      -.....+.|.|+++++++--..|+|++++..++..  +..+.     ...+....|+++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            34567899999998887766579999998655432  11111     134667889999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2377|consensus

Probab=92.43  E-value=5.1  Score=32.60  Aligned_cols=134  Identities=11%  Similarity=0.108  Sum_probs=74.3

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEeecCCCc--EEEEEe-cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee---
Q psy4391          31 SSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL---  104 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~---  104 (231)
                      +.+-|. |.+..+.+...|.+.-|......  ....+. ..++++.++.|++|.+.+|+--.+..|.+++....+..   
T Consensus        26 ngvFfD-DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFD-DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeec-cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            344454 33433444456666666654322  122222 23458999999999999999999999999988433322   


Q ss_pred             -eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCC-CceeeeccCCCCCeEEEEEcCCCCe
Q psy4391         105 -KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSL  167 (231)
Q Consensus       105 -~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~  167 (231)
                       ...+.....+....|... .-+|.....| +.+|.... .+.++..+.+.-.|.=..|.++-+.
T Consensus       105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v  167 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAV  167 (657)
T ss_pred             HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccce
Confidence             222334455778888766 5555555544 44544322 1223333334434444445555443

>PLN02153 epithiospecifier protein

Probab=92.29  E-value=4.5  Score=31.71  Aligned_cols=54  Identities=17%  Similarity=0.062  Sum_probs=27.9

Q ss_pred             CcEEEEECCCCceeeeccCC----CCCeEEEEEcCCCCeEEEEecC--------------CeEEEEeCCCCce
Q psy4391         133 ESVRIWDVRTGKCLKTLPAH----SDPVSAVHFNRDGSLIVSSSYD--------------GLCRIWDTASGQC  187 (231)
Q Consensus       133 ~~i~v~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d--------------g~i~v~d~~~~~~  187 (231)
                      ..+.+||+.+.+-...-...    .....++ ...++++++.|+..              ..+..+|+.+.+.
T Consensus       217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W  288 (341)
T PLN02153        217 NAVQFFDPASGKWTEVETTGAKPSARSVFAH-AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW  288 (341)
T ss_pred             CceEEEEcCCCcEEeccccCCCCCCcceeee-EEECCEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence            35888998876543221100    1111111 22346677777742              2577888876653

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.17  E-value=3.9  Score=30.72  Aligned_cols=117  Identities=16%  Similarity=0.120  Sum_probs=73.3

Q ss_pred             EEEEEECCCCCEEEEecCCC--cEEEEeCCCceeeeeecCCCc-ceEEEEECCCCCEEEEeecCCcEEEEECCCCceeee
Q psy4391          72 ISDVAWSSDSRLLVSGSDDK--TLKIWELSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT  148 (231)
Q Consensus        72 v~~~~~~~~~~~l~~~~~~g--~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  148 (231)
                      ...+.|..++.++-+.+.-|  .|+.+|+++++......-... .--.+... ++++....-.++...+||..+.+.+..
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~  125 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT  125 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence            45678877888777887766  799999999886655432221 11122222 234444556678899999998888777


Q ss_pred             ccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeee
Q psy4391         149 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI  192 (231)
Q Consensus       149 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  192 (231)
                      +.-. +.-..++  .|++.|+.......+..+|..+.+....+.
T Consensus       126 ~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~  166 (264)
T PF05096_consen  126 FPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ  166 (264)
T ss_dssp             EE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred             EecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence            6532 3334555  467777776667789999998877665553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.86  E-value=4.6  Score=30.86  Aligned_cols=139  Identities=17%  Similarity=0.130  Sum_probs=82.1

Q ss_pred             cEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCC--CcceEEEEECCCCCEEEEeecCCcEEEEECCCCcee--
Q psy4391          71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL--  146 (231)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--  146 (231)
                      -+.++.++  +++...+..+.-+++.|+.+...-..+..-  ....  -.|.-.|++...+..+.-+-++|+.+.+..  
T Consensus        88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gya--ygv~vsGn~aYVadlddgfLivdvsdpssP~l  163 (370)
T COG5276          88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYA--YGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL  163 (370)
T ss_pred             hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceE--EEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence            34555665  456777778888999999875433322211  1222  234456788888886777778888765432  


Q ss_pred             -eeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecC-CCCCeEEEEECCCCCEEEEEe
Q psy4391         147 -KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       147 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~s  215 (231)
                       .+..........++++  |++...+..|+-+.+.|+.......-+... .++.+..+..+++-.+++...
T Consensus       164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~  232 (370)
T COG5276         164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD  232 (370)
T ss_pred             eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc
Confidence             2222222233455554  777788889999999998765433222221 223566666777655555443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.77  E-value=1.8  Score=36.47  Aligned_cols=71  Identities=23%  Similarity=0.366  Sum_probs=43.3

Q ss_pred             CCCCEEEEeecCCcEEEEECCC----Cceeee--------------c--------cCCCCCeEEEEEcC----CCCeEEE
Q psy4391         121 PQSNLIVSGSFDESVRIWDVRT----GKCLKT--------------L--------PAHSDPVSAVHFNR----DGSLIVS  170 (231)
Q Consensus       121 ~~~~~l~~~~~d~~i~v~d~~~----~~~~~~--------------~--------~~~~~~v~~~~~~~----~~~~l~~  170 (231)
                      ++...++.+..||.+.......    +.....              +        ......+.+++++.    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3566788888888887776653    111110              0        00123455566666    6788999


Q ss_pred             EecCCeEEEEeCCCCceeeee
Q psy4391         171 SSYDGLCRIWDTASGQCLKTL  191 (231)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~  191 (231)
                      .+.|+.+++||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999985543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.77  E-value=0.96  Score=22.82  Aligned_cols=32  Identities=22%  Similarity=0.358  Sum_probs=23.4

Q ss_pred             CCCCEEEEee-cCCcEEEEECCCCceeeeccCC
Q psy4391         121 PQSNLIVSGS-FDESVRIWDVRTGKCLKTLPAH  152 (231)
Q Consensus       121 ~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~  152 (231)
                      |+++.++++. .++.|.++|..+++.+..+...
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            4666666554 5788999999888877776653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.64  E-value=5.8  Score=31.54  Aligned_cols=107  Identities=17%  Similarity=0.072  Sum_probs=59.6

Q ss_pred             EEEEEeCCCcEEEeecCCCcEEEEEeccc--ccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCC-cceEEE
Q psy4391          41 WLASSSADKLIKIWGAYDGKFEKTISGHK--LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHS-NYVFCC  117 (231)
Q Consensus        41 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~-~~v~~~  117 (231)
                      .+..+..+|.+.-.|..++..........  ..+..-....+|+ ++.++.++.++.+|..+++..-...... ..+...
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~  148 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP  148 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence            34445677777777777766443222111  1111112222555 7788888888889988887766655443 111111


Q ss_pred             EECCCCCEEEEeecCCcEEEEECCCCceeeec
Q psy4391         118 NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL  149 (231)
Q Consensus       118 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  149 (231)
                      ..-.++ .+...+.++.+.-.|..+++.....
T Consensus       149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~  179 (370)
T COG1520         149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTY  179 (370)
T ss_pred             cEEcCc-EEEEecCCCeEEEEEccCCcEEEEE
Confidence            122232 3333446788888888888775553

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.45  E-value=1.5  Score=36.87  Aligned_cols=71  Identities=28%  Similarity=0.385  Sum_probs=41.2

Q ss_pred             CCCCEEEEEeCCCcEEEeecCC----C-cEEEEEecc---------------------cccEEEEEECC----CCCEEEE
Q psy4391          37 PNGEWLASSSADKLIKIWGAYD----G-KFEKTISGH---------------------KLGISDVAWSS----DSRLLVS   86 (231)
Q Consensus        37 ~~~~~l~~~~~dg~i~i~~~~~----~-~~~~~~~~~---------------------~~~v~~~~~~~----~~~~l~~   86 (231)
                      ++...++.+..||.+.......    + .........                     .......++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3566777777888877665442    1 111111110                     12244555555    6778999


Q ss_pred             ecCCCcEEEEeCCCceeeeee
Q psy4391          87 GSDDKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        87 ~~~~g~i~~~d~~~~~~~~~~  107 (231)
                      .+.|+.+|+||+.+++++...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999999885543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PLN02153 epithiospecifier protein

Probab=91.43  E-value=5.8  Score=31.14  Aligned_cols=146  Identities=14%  Similarity=0.261  Sum_probs=68.4

Q ss_pred             CCCEEEEEeCC-------CcEEEeecCCCcEEEEEecc---cc---cEEEEEECCCCCEEEEecCC-----CcEEEEeCC
Q psy4391          38 NGEWLASSSAD-------KLIKIWGAYDGKFEKTISGH---KL---GISDVAWSSDSRLLVSGSDD-----KTLKIWELS   99 (231)
Q Consensus        38 ~~~~l~~~~~d-------g~i~i~~~~~~~~~~~~~~~---~~---~v~~~~~~~~~~~l~~~~~~-----g~i~~~d~~   99 (231)
                      ++++++.|+.+       ..+.+||..+.+........   ..   ....+.+  +++.++.|+.+     ..+.+||..
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            34555666653       24777887665543321110   10   1111222  45556666643     257788987


Q ss_pred             Cceeee--eecC---CCcceEEEEECCCCCEEEEeecC-----------CcEEEEECCCCceeeeccCC------CCCeE
Q psy4391         100 SGKCLK--TLKG---HSNYVFCCNFNPQSNLIVSGSFD-----------ESVRIWDVRTGKCLKTLPAH------SDPVS  157 (231)
Q Consensus       100 ~~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~v~d~~~~~~~~~~~~~------~~~v~  157 (231)
                      +.+-..  .+..   ............++++++.|+.+           ..+.+||..+.+-.. +...      .... 
T Consensus       110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~-  187 (341)
T PLN02153        110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGA-  187 (341)
T ss_pred             CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcc-
Confidence            754322  1100   11111111122345666777643           246788887664322 1111      1111 


Q ss_pred             EEEEcCCCCeEEEEecC-------------CeEEEEeCCCCcee
Q psy4391         158 AVHFNRDGSLIVSSSYD-------------GLCRIWDTASGQCL  188 (231)
Q Consensus       158 ~~~~~~~~~~l~~~~~d-------------g~i~v~d~~~~~~~  188 (231)
                      +++. -++++++.++.+             ..+.+||+.+.+..
T Consensus       188 ~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~  230 (341)
T PLN02153        188 GFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT  230 (341)
T ss_pred             eEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence            1221 245655555422             35888998877644

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.38  E-value=1.9  Score=34.86  Aligned_cols=151  Identities=17%  Similarity=0.163  Sum_probs=81.4

Q ss_pred             cEEEEEECCCCCEEEEecCCCcEEEEeCCCceee-eee-cCCCc----ceE-EEEECCCCCEEEEeecCCcEEEE-ECCC
Q psy4391          71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL-KTL-KGHSN----YVF-CCNFNPQSNLIVSGSFDESVRIW-DVRT  142 (231)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~l~~~~~d~~i~v~-d~~~  142 (231)
                      .+..+-..|||+.++.-+. ..+.++++.+.... +++ ....+    .+. ++..-..|..+..++.||.|.-| |.+.
T Consensus       222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~  300 (733)
T COG4590         222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR  300 (733)
T ss_pred             chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence            4555677899998876655 57778877653311 111 11011    111 11112245567788889998877 5554


Q ss_pred             Cce-----eeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q psy4391         143 GKC-----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (231)
Q Consensus       143 ~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d  217 (231)
                      +..     ++.+......+..+.-..+.+-+++-+..|.+.++.....+.+-.-....  ....+++||.+.+|++-. .
T Consensus       301 ~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~--~~~~~~~Sp~~~~Ll~e~-~  377 (733)
T COG4590         301 DGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ--APQLVAMSPNQAYLLSED-Q  377 (733)
T ss_pred             CCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhc--CcceeeeCcccchheeec-C
Confidence            321     12222222233333222334556677778888777544333221111111  335578999999988654 5


Q ss_pred             CeEEEEeC
Q psy4391         218 NTLKLWDS  225 (231)
Q Consensus       218 ~~v~vwd~  225 (231)
                      |.++++..
T Consensus       378 gki~~~~l  385 (733)
T COG4590         378 GKIRLAQL  385 (733)
T ss_pred             CceEEEEe
Confidence            78888874

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.28  E-value=5.8  Score=30.85  Aligned_cols=65  Identities=15%  Similarity=0.203  Sum_probs=35.2

Q ss_pred             CCCEEEEeec-----CCcEEEEECCCCceeee--ccCCCCCeEEEEEcCCCCeEEEEecCC----eEEEEeCCCCce
Q psy4391         122 QSNLIVSGSF-----DESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDG----LCRIWDTASGQC  187 (231)
Q Consensus       122 ~~~~l~~~~~-----d~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~v~d~~~~~~  187 (231)
                      ++.+.+.|+.     ...+..||+.+.+-...  +... ......+...++++++.|+.++    .+..||+.+.+.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            4566666664     23578889876653221  2111 1111222233567777777654    356889887664

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1983|consensus

Probab=91.02  E-value=12  Score=34.14  Aligned_cols=30  Identities=30%  Similarity=0.433  Sum_probs=26.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecC
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAY   57 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~   57 (231)
                      .....++|+|...++|.+..+|.+++|...
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEeccc
Confidence            356688999999999999999999999764

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.61  E-value=1.3  Score=22.29  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=22.9

Q ss_pred             CCCCeEEEEe-cCCeEEEEeCCCCceeeeeec
Q psy4391         163 RDGSLIVSSS-YDGLCRIWDTASGQCLKTLID  193 (231)
Q Consensus       163 ~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~  193 (231)
                      |+++.++++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677666554 578999999988887776654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2377|consensus

Probab=90.51  E-value=8.4  Score=31.43  Aligned_cols=103  Identities=11%  Similarity=0.185  Sum_probs=62.4

Q ss_pred             CcceEEEEECCCCCEEEEeecCCcEEEEECCCCcee----eeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCc
Q psy4391         111 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL----KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  186 (231)
Q Consensus       111 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  186 (231)
                      .+.+.++.|++|.+.+|.-..+..|.+++....+..    .........|....|+.+ .-+|.....| +.+|.....+
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek  143 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK  143 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence            457999999999999999999999999987433221    112233445777888865 4444444333 4445433222


Q ss_pred             eeeeeecCCCCCeEEEEECCCCCEEEEEe
Q psy4391         187 CLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       187 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                      .--++...+...|+...|.++.+.++.++
T Consensus       144 rslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  144 RSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             hhhhhhhhcccCccEEEEccccceEeeec
Confidence            11112223444566777888877655544

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=90.38  E-value=7.4  Score=30.56  Aligned_cols=41  Identities=15%  Similarity=0.015  Sum_probs=19.6

Q ss_pred             eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q psy4391         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d  217 (231)
                      .+.+||..+.+.... ...........+..-+++.+++|+.+
T Consensus       291 ~~e~yd~~~~~W~~~-~~lp~~~~~~~~~~~~~~iyv~GG~~  331 (346)
T TIGR03547       291 SSEVYALDNGKWSKV-GKLPQGLAYGVSVSWNNGVLLIGGEN  331 (346)
T ss_pred             EeeEEEecCCccccc-CCCCCCceeeEEEEcCCEEEEEeccC
Confidence            456788776543221 11111111222344567777777754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=90.35  E-value=9.2  Score=31.63  Aligned_cols=107  Identities=12%  Similarity=0.147  Sum_probs=53.5

Q ss_pred             CCCEEEEecCC-----CcEEEEeCCCceeeeeecC---CCcceEEEEECCCCCEEEEeecCC-----cEEEEECCCCcee
Q psy4391          80 DSRLLVSGSDD-----KTLKIWELSSGKCLKTLKG---HSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGKCL  146 (231)
Q Consensus        80 ~~~~l~~~~~~-----g~i~~~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~  146 (231)
                      ++..++.|+.+     ..+..||+.+.+....-..   ...........-++++.+.|+.++     .+..||+.+.+..
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            44555666654     3577889887654322111   011111111122456667776543     3677888765532


Q ss_pred             eecc-----CCCCCeEEEEEcCCCCeEEEEecC----CeEEEEeCCCCcee
Q psy4391         147 KTLP-----AHSDPVSAVHFNRDGSLIVSSSYD----GLCRIWDTASGQCL  188 (231)
Q Consensus       147 ~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~  188 (231)
                      ..-.     ..........  -+++.++.++.+    ..+.+||+.+.+..
T Consensus       308 ~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~  356 (470)
T PLN02193        308 HCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWT  356 (470)
T ss_pred             eCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence            1110     0011111122  256777777655    46889999887653

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.58  E-value=8.7  Score=33.35  Aligned_cols=103  Identities=14%  Similarity=0.137  Sum_probs=60.9

Q ss_pred             CCCEEEEeecCCcEEEEECCC-------C----c---------eeeeccCCCCCeEEEEEc--CCCCeEEEEecCCeEEE
Q psy4391         122 QSNLIVSGSFDESVRIWDVRT-------G----K---------CLKTLPAHSDPVSAVHFN--RDGSLIVSSSYDGLCRI  179 (231)
Q Consensus       122 ~~~~l~~~~~d~~i~v~d~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~v  179 (231)
                      ....|+.+..||.|.+|-++.       .    .         +...+. ....+..++++  ...+++|+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            446788889999999996521       0    0         001111 13467788888  77888888888887777


Q ss_pred             EeCCC--CceeeeeecCCCCCeEEEEECC-----CCC-EEEEEeCCCeEEEEeC
Q psy4391         180 WDTAS--GQCLKTLIDDDNPPVSFVKFSP-----NGK-YILAATLDNTLKLWDS  225 (231)
Q Consensus       180 ~d~~~--~~~~~~~~~~~~~~i~~~~~s~-----~g~-~l~~~s~d~~v~vwd~  225 (231)
                      |-...  .+....-.......|.++.|-+     .|. +|++++-.|.+-+|+.
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            74433  2211110111222344444433     232 7888999998888775

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=89.51  E-value=8  Score=29.66  Aligned_cols=154  Identities=14%  Similarity=0.265  Sum_probs=0.0

Q ss_pred             cEEEEEECCCCCEEEEecCC------------CcEEEEeCCCceeeeeec------CCCcceEEEEECCCCC------EE
Q psy4391          71 GISDVAWSSDSRLLVSGSDD------------KTLKIWELSSGKCLKTLK------GHSNYVFCCNFNPQSN------LI  126 (231)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~~------------g~i~~~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~------~l  126 (231)
                      .|..+...+.+++.+.=+..            -.|.+||+.+.+.++.+.      ...+.+..+.+.....      ..
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE


Q ss_pred             EEeecCCcEEEEECCCCceeeeccCCCC-------------------CeEEEEEcC---CCCeEEEEecCCeEEEEeCCC
Q psy4391         127 VSGSFDESVRIWDVRTGKCLKTLPAHSD-------------------PVSAVHFNR---DGSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       127 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~-------------------~v~~~~~~~---~~~~l~~~~~dg~i~v~d~~~  184 (231)
                      ++-...+-|.|+|+.+++.-+....+..                   .+..++.+|   ++++|+-....+. ++|.+.+
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T  160 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPT  160 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEH
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEH


Q ss_pred             CceeeeeecCCC-------------CCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         185 GQCLKTLIDDDN-------------PPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       185 ~~~~~~~~~~~~-------------~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .-....-.....             +....++++++|..+++--..+.|..|++
T Consensus       161 ~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~  214 (287)
T PF03022_consen  161 SVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDP  214 (287)
T ss_dssp             HHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEET
T ss_pred             HHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeC

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=89.14  E-value=8.4  Score=29.42  Aligned_cols=96  Identities=18%  Similarity=0.322  Sum_probs=56.7

Q ss_pred             CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec------CCCcEEEEeCCCceeeeeecC-----CCcceEEE
Q psy4391          49 KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS------DDKTLKIWELSSGKCLKTLKG-----HSNYVFCC  117 (231)
Q Consensus        49 g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~~g~i~~~d~~~~~~~~~~~~-----~~~~v~~~  117 (231)
                      ..|.+||....+....-.+-.+.|.++.|..+.+.++.|.      ....+..||.++.... .+..     -.+++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEE
Confidence            4688899877666554445567799999987766666653      3457888998876532 2222     12455555


Q ss_pred             EEC-CCC-CEEEEee-cC--CcEEEEECCCCce
Q psy4391         118 NFN-PQS-NLIVSGS-FD--ESVRIWDVRTGKC  145 (231)
Q Consensus       118 ~~~-~~~-~~l~~~~-~d--~~i~v~d~~~~~~  145 (231)
                      .+. .++ ++.+.|. .+  ..|..||-.....
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~  127 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSS  127 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEe
Confidence            552 233 3444443 22  3466777554433

>KOG4460|consensus

Probab=89.08  E-value=9.1  Score=31.83  Aligned_cols=73  Identities=27%  Similarity=0.341  Sum_probs=44.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeec---------CCCcEEEE---------Ee--cccccEEEEEECCCC---CEE
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGA---------YDGKFEKT---------IS--GHKLGISDVAWSSDS---RLL   84 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~---------~~~~~~~~---------~~--~~~~~v~~~~~~~~~---~~l   84 (231)
                      -.|..+..++.|..++.++.+|.+.++-.         ++++....         +.  ...-.+...+|+|+.   ..+
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            35778889999999998888997766431         22321111         00  111234556777754   456


Q ss_pred             EEecCCCcEEEEeCCC
Q psy4391          85 VSGSDDKTLKIWELSS  100 (231)
Q Consensus        85 ~~~~~~g~i~~~d~~~  100 (231)
                      ..-..|..+++||+..
T Consensus       184 ~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSE  199 (741)
T ss_pred             EEEecCcEEEEEecCC
Confidence            6666677777777654

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.04  E-value=1.8  Score=21.53  Aligned_cols=29  Identities=21%  Similarity=0.304  Sum_probs=18.2

Q ss_pred             CCCCeEEEEEcCCCCeEEEEe-cC--CeEEEE
Q psy4391         152 HSDPVSAVHFNRDGSLIVSSS-YD--GLCRIW  180 (231)
Q Consensus       152 ~~~~v~~~~~~~~~~~l~~~~-~d--g~i~v~  180 (231)
                      ....-....|+|||+.|+-++ .+  |...||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344567789999999887554 34  444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG2247|consensus

Probab=88.92  E-value=0.063  Score=43.14  Aligned_cols=101  Identities=17%  Similarity=0.242  Sum_probs=67.1

Q ss_pred             ccceEEEEECCCCCEE-EEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee
Q psy4391          27 TKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      ++....++|..+|+.+ +.+...+.+.+|++.+....+.-.+....-.-+.|++....++.+...|.+.+|+..+.+...
T Consensus        74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii  153 (615)
T KOG2247|consen   74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII  153 (615)
T ss_pred             chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh
Confidence            3445677888888754 456778999999986443222111212122226889888888888889999999987766544


Q ss_pred             eecCCCcceEEEEECCCCCEEE
Q psy4391         106 TLKGHSNYVFCCNFNPQSNLIV  127 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~  127 (231)
                      ....|...+.++++.+.+..+.
T Consensus       154 v~Gkh~RRgtq~av~lEd~vil  175 (615)
T KOG2247|consen  154 VMGKHQRRGTQIAVTLEDYVIL  175 (615)
T ss_pred             hhcccccceeEEEecccceeee
Confidence            4443667788888888765443

>KOG1900|consensus

Probab=88.54  E-value=12  Score=34.63  Aligned_cols=138  Identities=15%  Similarity=0.331  Sum_probs=76.3

Q ss_pred             cCCCcEEEEeCCCceeeeeecCCCcceEEEEE--------CCCCCEEEEeecCCcEEEEECC----CCc-e----eeecc
Q psy4391          88 SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNF--------NPQSNLIVSGSFDESVRIWDVR----TGK-C----LKTLP  150 (231)
Q Consensus        88 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~d~~i~v~d~~----~~~-~----~~~~~  150 (231)
                      +-|..+.+|+.+++.....+.+....|..+..        .|.=+++..-..--.|.++-+.    ++. .    ...+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            34778999999986555555444444433322        2222233322322334443221    111 0    01222


Q ss_pred             CCCCCeEEEEEcCCCCeEEEEecCCeEE--EEeCCCC----ce-------------ee---eeecCCCCCeEEEEECCCC
Q psy4391         151 AHSDPVSAVHFNRDGSLIVSSSYDGLCR--IWDTASG----QC-------------LK---TLIDDDNPPVSFVKFSPNG  208 (231)
Q Consensus       151 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~--v~d~~~~----~~-------------~~---~~~~~~~~~i~~~~~s~~g  208 (231)
                      .....|.++....+|+.+++|- ||.+.  +|....+    ++             +.   .+...+..+|..+.++.+-
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            3345678888788899887765 44332  2222211    00             11   1122345578899999988


Q ss_pred             CEEEEEeCCCeEEEEeCC
Q psy4391         209 KYILAATLDNTLKLWDSY  226 (231)
Q Consensus       209 ~~l~~~s~d~~v~vwd~~  226 (231)
                      ..+.+=+..|.|++||.-
T Consensus       255 ~IlY~lsek~~v~~Y~i~  272 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIG  272 (1311)
T ss_pred             ceeeeeccCceEEEEEcc
Confidence            899999999999999963

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=88.10  E-value=6.1  Score=35.07  Aligned_cols=79  Identities=14%  Similarity=0.156  Sum_probs=46.9

Q ss_pred             CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEE-EecCC-----eEEEEeCCCCce-eeeeecCCCCCeEEEEE
Q psy4391         132 DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SSYDG-----LCRIWDTASGQC-LKTLIDDDNPPVSFVKF  204 (231)
Q Consensus       132 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg-----~i~v~d~~~~~~-~~~~~~~~~~~i~~~~~  204 (231)
                      .+.|.+-|.........-..+..++.+..|+|||+.++- .+..+     .|.+-|+.+... +.++.. +...|..-.+
T Consensus       328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v-e~aaiprwrv  406 (912)
T TIGR02171       328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV-ENAAIPRWRV  406 (912)
T ss_pred             CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec-ccccccceEe
Confidence            357888887655543321345678889999999999986 44444     477778876432 222222 2333333344


Q ss_pred             CCCCCEE
Q psy4391         205 SPNGKYI  211 (231)
Q Consensus       205 s~~g~~l  211 (231)
                      .++|..+
T Consensus       407 ~e~gdt~  413 (912)
T TIGR02171       407 LENGDTV  413 (912)
T ss_pred             cCCCCeE
Confidence            5666544

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>PLN02193 nitrile-specifier protein

Probab=87.98  E-value=14  Score=30.58  Aligned_cols=145  Identities=11%  Similarity=0.040  Sum_probs=69.0

Q ss_pred             CCEEEEEeCC-----CcEEEeecCCCcEEEEEec---cccc-EEEEEECCCCCEEEEecCCC-----cEEEEeCCCceee
Q psy4391          39 GEWLASSSAD-----KLIKIWGAYDGKFEKTISG---HKLG-ISDVAWSSDSRLLVSGSDDK-----TLKIWELSSGKCL  104 (231)
Q Consensus        39 ~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~---~~~~-v~~~~~~~~~~~l~~~~~~g-----~i~~~d~~~~~~~  104 (231)
                      +++.+.|+.+     ..+..||..+.+....-..   ...+ -..++ .-+++.++.|+.++     .+..||+.+.+..
T Consensus       229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            3444555544     2466777766554332111   1111 11222 22455566666543     4667887765532


Q ss_pred             eeec-----CCCcceEEEEECCCCCEEEEeecC----CcEEEEECCCCceeeeccC----CC-CCeEEEEEcCCCCeEEE
Q psy4391         105 KTLK-----GHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKCLKTLPA----HS-DPVSAVHFNRDGSLIVS  170 (231)
Q Consensus       105 ~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~----~~-~~v~~~~~~~~~~~l~~  170 (231)
                      ..-.     ..........  -++++++.++.+    ..+.+||+.+.+....-..    .. ....++.  -++++++.
T Consensus       308 ~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~  383 (470)
T PLN02193        308 HCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIF  383 (470)
T ss_pred             eCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEE
Confidence            2110     0011111111  256677777655    4588999987654322110    01 1112222  25667777


Q ss_pred             EecC--------------CeEEEEeCCCCcee
Q psy4391         171 SSYD--------------GLCRIWDTASGQCL  188 (231)
Q Consensus       171 ~~~d--------------g~i~v~d~~~~~~~  188 (231)
                      |+..              ..+.+||+.+.+..
T Consensus       384 GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~  415 (470)
T PLN02193        384 GGEIAMDPLAHVGPGQLTDGTFALDTETLQWE  415 (470)
T ss_pred             CCccCCccccccCccceeccEEEEEcCcCEEE
Confidence            7743              24788898877643

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=87.38  E-value=4.9  Score=24.67  Aligned_cols=43  Identities=19%  Similarity=0.122  Sum_probs=26.4

Q ss_pred             ecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC
Q psy4391         172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~  216 (231)
                      ..+|.+..||+.+++....+....  --+.+++++|+++|+++-.
T Consensus        34 ~~~GRll~ydp~t~~~~vl~~~L~--fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen   34 RPTGRLLRYDPSTKETTVLLDGLY--FPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             ---EEEEEEETTTTEEEEEEEEES--SEEEEEE-TTSSEEEEEEG
T ss_pred             CCCcCEEEEECCCCeEEEehhCCC--ccCeEEEcCCCCEEEEEec
Confidence            346778889999887433332222  2367999999998777653

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.30  E-value=12  Score=29.19  Aligned_cols=143  Identities=13%  Similarity=0.193  Sum_probs=80.2

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCc------EEEeecCC--C--cEEE-----EEecccc--------cEEEEEECCCCCE
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKL------IKIWGAYD--G--KFEK-----TISGHKL--------GISDVAWSSDSRL   83 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~------i~i~~~~~--~--~~~~-----~~~~~~~--------~v~~~~~~~~~~~   83 (231)
                      -+.++.+.+.+++..+++-+.+|.      +..+.+..  +  ....     .+....+        ...++++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            367889999965555555555665      44444322  1  1111     1111111        3446788778887


Q ss_pred             EEEecCC------CcEEEEeCCCceeeeeec---------------CCCcceEEEEECCCCCEEEEeecC-----C----
Q psy4391          84 LVSGSDD------KTLKIWELSSGKCLKTLK---------------GHSNYVFCCNFNPQSNLIVSGSFD-----E----  133 (231)
Q Consensus        84 l~~~~~~------g~i~~~d~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~d-----~----  133 (231)
                      +++.-.+      ..|..++.. ++....+.               ..+..+-.++++|+|+.|+++.+.     +    
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7777666      778888866 44333221               123446789999999966655432     2    


Q ss_pred             -------cEEEEECCC-Cce----eeeccC-----CCCCeEEEEEcCCCCeEEE
Q psy4391         134 -------SVRIWDVRT-GKC----LKTLPA-----HSDPVSAVHFNRDGSLIVS  170 (231)
Q Consensus       134 -------~i~v~d~~~-~~~----~~~~~~-----~~~~v~~~~~~~~~~~l~~  170 (231)
                             ++..||..+ +..    ...+..     ....++.+.+.+++++|+.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                   233455554 211    222222     3457888888899886654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=87.21  E-value=3.7  Score=29.71  Aligned_cols=57  Identities=14%  Similarity=0.198  Sum_probs=37.6

Q ss_pred             CeEEEEecCCeEEEEeCCCCc--eeeeeecCCCCCeEEEEECCCCCEEEEEeCCC------eEEEEe
Q psy4391         166 SLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATLDN------TLKLWD  224 (231)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~------~v~vwd  224 (231)
                      +.|+.+...+.|.+|++...+  .+..+..  -..|..+.++..|+||++--.++      .+|+|-
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T--v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~   93 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST--VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF   93 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc--hhheeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence            445444667889999998333  2333322  35678899999999999865432      556653

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.20  E-value=11  Score=28.71  Aligned_cols=92  Identities=21%  Similarity=0.342  Sum_probs=56.6

Q ss_pred             CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEee------cCCcEEEEECCCCceeeeccC-----CCCCeEEE
Q psy4391          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS------FDESVRIWDVRTGKCLKTLPA-----HSDPVSAV  159 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~-----~~~~v~~~  159 (231)
                      ..|++||..+.+....-..-.+.|.++.|..+.++++.|.      ....+..||+.+... ..+..     -.+++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence            4688999887765554444567799999987777777764      344578899876643 22222     23678777


Q ss_pred             EEcC-CCC-eEEEEe-cCC--eEEEEeCC
Q psy4391         160 HFNR-DGS-LIVSSS-YDG--LCRIWDTA  183 (231)
Q Consensus       160 ~~~~-~~~-~l~~~~-~dg--~i~v~d~~  183 (231)
                      .+.. |+. ..+.|. .+|  .+..||=.
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs  123 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGS  123 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCC
Confidence            7642 333 343433 233  46666543

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=86.85  E-value=7.5  Score=34.53  Aligned_cols=77  Identities=8%  Similarity=0.006  Sum_probs=45.9

Q ss_pred             CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEE-ecCCC-----cEEEEeCCCce-eeeeecCCCcceEEEEEC
Q psy4391          48 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVS-GSDDK-----TLKIWELSSGK-CLKTLKGHSNYVFCCNFN  120 (231)
Q Consensus        48 dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~g-----~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~  120 (231)
                      .+.+.+-|.........-.....++....|+|||++|+. .+-++     .|++-|+.+.. -...+......|..-.+.
T Consensus       328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~  407 (912)
T TIGR02171       328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVL  407 (912)
T ss_pred             CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEec
Confidence            356777776544443331344667888899999999987 33333     48888887532 223344444455555555


Q ss_pred             CCCC
Q psy4391         121 PQSN  124 (231)
Q Consensus       121 ~~~~  124 (231)
                      ++|.
T Consensus       408 e~gd  411 (912)
T TIGR02171       408 ENGD  411 (912)
T ss_pred             CCCC
Confidence            5554

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>smart00564 PQQ beta-propeller repeat

Probab=86.79  E-value=2.2  Score=20.14  Aligned_cols=24  Identities=33%  Similarity=0.417  Sum_probs=19.6

Q ss_pred             EEEEeecCCcEEEEECCCCceeee
Q psy4391         125 LIVSGSFDESVRIWDVRTGKCLKT  148 (231)
Q Consensus       125 ~l~~~~~d~~i~v~d~~~~~~~~~  148 (231)
                      .++.++.++.+..+|.++|+....
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEE
Confidence            577788899999999988876654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=86.44  E-value=13  Score=28.66  Aligned_cols=112  Identities=14%  Similarity=0.253  Sum_probs=66.9

Q ss_pred             eEEEEECCCCCEEEEeecCCcEEEEECC------CCce-eeeccC-----CCCCeEEEEEcCCCC------------eEE
Q psy4391         114 VFCCNFNPQSNLIVSGSFDESVRIWDVR------TGKC-LKTLPA-----HSDPVSAVHFNRDGS------------LIV  169 (231)
Q Consensus       114 v~~~~~~~~~~~l~~~~~d~~i~v~d~~------~~~~-~~~~~~-----~~~~v~~~~~~~~~~------------~l~  169 (231)
                      .+.++++|.+.+.++....+...+||..      ..+. +-.+..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4568899999888888888899999986      1222 222221     123456666654322            256


Q ss_pred             EEecCCeEEEEeCCCCce---ee-eeec-C-CCCCeEEEEEC--CCCCEEEEEe-CCCeEEEEeC
Q psy4391         170 SSSYDGLCRIWDTASGQC---LK-TLID-D-DNPPVSFVKFS--PNGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~---~~-~~~~-~-~~~~i~~~~~s--~~g~~l~~~s-~d~~v~vwd~  225 (231)
                      .+++||+|.-|...-...   .. .... . ......-+++.  ..+.+|+++. ..++|.|||.
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~  169 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG  169 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence            788999999998543322   11 1111 1 11222334544  3466776665 4789999995

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=85.72  E-value=17  Score=29.11  Aligned_cols=40  Identities=18%  Similarity=0.035  Sum_probs=18.8

Q ss_pred             EEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q psy4391         177 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (231)
Q Consensus       177 i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d  217 (231)
                      +.+||+.+.+... +.......-...+..-+++.+++|+..
T Consensus       314 ~e~yd~~~~~W~~-~~~lp~~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQK-VGELPQGLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccc-cCcCCCCccceEEEEeCCEEEEEcCCC
Confidence            4578887765322 111111111222344556777777653

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=85.52  E-value=2.5  Score=19.42  Aligned_cols=24  Identities=13%  Similarity=0.275  Sum_probs=16.5

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         200 SFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       200 ~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      ..++++++|+.+++=+...+|.+|
T Consensus         5 ~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    5 HGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEETTSEEEEEECCCTEEEEE
T ss_pred             cEEEEeCCCCEEEEECCCCEEEEC
Confidence            456777777777776666777664

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.27  E-value=12  Score=27.18  Aligned_cols=50  Identities=14%  Similarity=0.238  Sum_probs=35.1

Q ss_pred             CEEEEeecCCcEEEEECCCC--ceeeeccCCCCCeEEEEEcCCCCeEEEEecC
Q psy4391         124 NLIVSGSFDESVRIWDVRTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus       124 ~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      ..|+.+.....|.+|++...  +....+..- +.|..+.++..|+++++--.+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEee
Confidence            34444466677999999833  334455443 688899999999999986543

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=85.19  E-value=19  Score=29.29  Aligned_cols=29  Identities=21%  Similarity=0.470  Sum_probs=22.2

Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         198 PVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       198 ~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      .|..++..+..+.|++.+.+|.|.+||..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence            37778888888889999999999999864

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=85.14  E-value=17  Score=28.85  Aligned_cols=105  Identities=14%  Similarity=0.118  Sum_probs=59.9

Q ss_pred             CEEEEecCCCcEEEEeCCCceeeeeecCCC--cceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC-CCeEE
Q psy4391          82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSA  158 (231)
Q Consensus        82 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~  158 (231)
                      ..+.++..+|.+.-.|.+++..+-......  ..+..-....+|+ ++.++.++.++.+|.++|+......... ..+..
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~  147 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS  147 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence            345566778888888888877543222111  1111111122555 7778888899999998898877766544 11111


Q ss_pred             EEEcCCCCeEEEEecCCeEEEEeCCCCcee
Q psy4391         159 VHFNRDGSLIVSSSYDGLCRIWDTASGQCL  188 (231)
Q Consensus       159 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  188 (231)
                      ...-.++. +..++.++.+.-.|..+++..
T Consensus       148 ~~v~~~~~-v~~~s~~g~~~al~~~tG~~~  176 (370)
T COG1520         148 PPVVGDGT-VYVGTDDGHLYALNADTGTLK  176 (370)
T ss_pred             CcEEcCcE-EEEecCCCeEEEEEccCCcEE
Confidence            12222333 333336788888887777653

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=84.40  E-value=22  Score=29.52  Aligned_cols=135  Identities=20%  Similarity=0.185  Sum_probs=0.0

Q ss_pred             cceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEeccccc---EEEEEECCCCCEEEEecC---
Q psy4391          16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSRLLVSGSD---   89 (231)
Q Consensus        16 ~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~---   89 (231)
                      +..+...+.........+...++|.+++...  +.+..+|. .|+......-....   -+++...|+|++|+.+..   
T Consensus       136 ~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~  212 (477)
T PF05935_consen  136 NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKY  212 (477)
T ss_dssp             TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTE
T ss_pred             CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeeccc


Q ss_pred             ----------CCcEEEEeCCCceeeeeecCCCcc---------------------------eEEEEECC-CCCEEEEeec
Q psy4391          90 ----------DKTLKIWELSSGKCLKTLKGHSNY---------------------------VFCCNFNP-QSNLIVSGSF  131 (231)
Q Consensus        90 ----------~g~i~~~d~~~~~~~~~~~~~~~~---------------------------v~~~~~~~-~~~~l~~~~~  131 (231)
                                .-.|..+| .+++.+..+....-.                           +.++.+.+ ++.+++++-.
T Consensus       213 ~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~  291 (477)
T PF05935_consen  213 VDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRH  291 (477)
T ss_dssp             E-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETT
T ss_pred             ccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCc


Q ss_pred             CCcEEEEECCCCceeeeccCCCC
Q psy4391         132 DESVRIWDVRTGKCLKTLPAHSD  154 (231)
Q Consensus       132 d~~i~v~d~~~~~~~~~~~~~~~  154 (231)
                      ...|...|.++++....+..+.+
T Consensus       292 ~s~V~~Id~~t~~i~Wilg~~~~  314 (477)
T PF05935_consen  292 QSAVIKIDYRTGKIKWILGPPGG  314 (477)
T ss_dssp             T-EEEEEE-TTS-EEEEES-STT
T ss_pred             ceEEEEEECCCCcEEEEeCCCCC

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.23  E-value=3.6  Score=20.40  Aligned_cols=27  Identities=26%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             EEEEeecCCcEEEEECCCCceeeeccC
Q psy4391         125 LIVSGSFDESVRIWDVRTGKCLKTLPA  151 (231)
Q Consensus       125 ~l~~~~~d~~i~v~d~~~~~~~~~~~~  151 (231)
                      .++.++.+|.+.-+|.++|+.+..+..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            355668899999999999998877654

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=84.12  E-value=6.8  Score=23.89  Aligned_cols=26  Identities=19%  Similarity=0.488  Sum_probs=21.5

Q ss_pred             EEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         200 SFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       200 ~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      +.|.++|++++|++++. .+.|++|..
T Consensus        57 NGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   57 NGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             ceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            56889999999887775 679999874

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=83.39  E-value=32  Score=30.58  Aligned_cols=114  Identities=14%  Similarity=0.089  Sum_probs=67.0

Q ss_pred             cceEEEEECCC-CCEEEEeecCCcEEEEECCCCc-----eeeeccCCC----------CCeEEEEEcCCCCeEEEEecCC
Q psy4391         112 NYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGK-----CLKTLPAHS----------DPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus       112 ~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                      ....+++|+|. ...+|.....|...|||+....     .........          .....+.|.++...|++++ ..
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence            44567889984 4689999999999999992111     111110111          2234678888777777765 45


Q ss_pred             eEEEEeCCCCceee-eeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCC
Q psy4391         176 LCRIWDTASGQCLK-TLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       176 ~i~v~d~~~~~~~~-~~~~~~~~~i~~~~~s~~g-~~l~~~s~d~~v~vwd~~~  227 (231)
                      .+.++|+.+..... .........|..+.-+|.. .+++.-+ ...|-..|..+
T Consensus       225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            67888998776533 2222233456666666662 2232222 35666666544

These proteins are found in fungi.

>KOG3616|consensus

Probab=82.74  E-value=4.1  Score=35.35  Aligned_cols=64  Identities=20%  Similarity=0.373  Sum_probs=0.0

Q ss_pred             eEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         156 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       156 v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      ++++.-+|.++.++.+.+||.|.+|+....+  ..-......|-..+.|...|  |++.+.|.++.-|
T Consensus        17 ~~aiqshp~~~s~v~~~~d~si~lfn~~~r~--qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~   80 (1636)
T KOG3616|consen   17 TTAIQSHPGGQSFVLAHQDGSIILFNFIPRR--QSKICEEAKPKENLVFTNHG--LVTATSDRRALAW   80 (1636)
T ss_pred             eeeeeecCCCceEEEEecCCcEEEEeecccc--hhhhhhhcCCccceeeeccc--eEEEeccchhhee

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.43  E-value=26  Score=28.87  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             EecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee--eeeec-----CCCcceEEEEECCCC------CEEEEee-
Q psy4391          65 ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC--LKTLK-----GHSNYVFCCNFNPQS------NLIVSGS-  130 (231)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~--~~~~~-----~~~~~v~~~~~~~~~------~~l~~~~-  130 (231)
                      +...-...+.|+|.|+++.+++--..|.|++++..++..  +..+.     ........++++|+-      .+|+... 
T Consensus        25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt  104 (454)
T TIGR03606        25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT  104 (454)
T ss_pred             EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence            333345578899999998766654469999988654432  11111     123557789999874      2344332 


Q ss_pred             ---------cCCcEEEEECCCC-------ce-eeeccC-CCCCeEEEEEcCCCCeEEEEecC
Q psy4391         131 ---------FDESVRIWDVRTG-------KC-LKTLPA-HSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus       131 ---------~d~~i~v~d~~~~-------~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                               ....|.-|.+...       +. +..+.. ....-..|+|.|||.++++.+..
T Consensus       105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                     1223444544311       11 111111 01223468899999877765543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=82.38  E-value=32  Score=29.75  Aligned_cols=169  Identities=22%  Similarity=0.275  Sum_probs=84.9

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCc--EEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~--i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~  102 (231)
                      .+...+..+.|+|+|+.++....++.  .++|......   .+..+...+....|+|++..++.....+..+.    .+.
T Consensus        57 ~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~----~~~  129 (620)
T COG1506          57 TFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKR----DGG  129 (620)
T ss_pred             ccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEeccccccc----CCc
Confidence            45677889999999999887663332  3344332221   33334556778899999998877222111100    000


Q ss_pred             eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCe------
Q psy4391         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL------  176 (231)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------  176 (231)
                       ...+   ...+ ...+...+      .....+.+.|...  ...........+....+++++..++....+..      
T Consensus       130 -~~~~---~~~~-~~~~~~~g------~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (620)
T COG1506         130 -DHLF---VDRL-PVWFDGRG------GERSDLYVVDIES--KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVT  196 (620)
T ss_pred             -eeee---eccc-ceeecCCC------CcccceEEEccCc--ccccccCCCCceeeeeeCCCCceeEEeeeccccCCceE
Confidence             0000   0000 11122222      2344566666654  22333344456666677776776665544332      


Q ss_pred             -EEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe
Q psy4391         177 -CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       177 -i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                       ..++...++. +... ......+..+.+.++|+.++..+
T Consensus       197 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~gk~~~~~~  234 (620)
T COG1506         197 NLYVLIEGNGE-LESL-TPGEGSISKLAFDADGKSIALLG  234 (620)
T ss_pred             eeEEEecCCCc-eEEE-cCCCceeeeeeeCCCCCeeEEec
Confidence             2223222332 2222 22333467788888888555444

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=82.28  E-value=35  Score=30.22  Aligned_cols=104  Identities=15%  Similarity=0.240  Sum_probs=55.1

Q ss_pred             EEEECCCCCEEEEeecCCc-----EEEEECCC---CceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce
Q psy4391         116 CCNFNPQSNLIVSGSFDES-----VRIWDVRT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (231)
Q Consensus       116 ~~~~~~~~~~l~~~~~d~~-----i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (231)
                      .+.|-|+|..+++-+.||.     |.++..+.   |..-... .-...+..++|+-....++. ...+.+.+|-..+...
T Consensus       251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNyhW  328 (1243)
T COG5290         251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNYHW  328 (1243)
T ss_pred             ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHH-hhcceEEEEEccceEE
Confidence            4789999999999876543     55554321   1110111 11123444566554444443 3466788997765443


Q ss_pred             eeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q psy4391         188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (231)
Q Consensus       188 ~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~v  222 (231)
                      --. .....+.+.-+.|+|....-+.-+..+.|..
T Consensus       329 YLK-~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~  362 (1243)
T COG5290         329 YLK-VERQIPGISYVKWHPEEKNTLLFRDGERILR  362 (1243)
T ss_pred             EEE-EeecCCCcceeeeccccCcEEEEecCCeEEE
Confidence            211 1123445667889987654333333344443

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=82.24  E-value=17  Score=26.49  Aligned_cols=99  Identities=15%  Similarity=0.184  Sum_probs=53.3

Q ss_pred             CCCEEEEeec--CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeE-EEEecCCeEEEEeCCCCceeeeeecCCCCC
Q psy4391         122 QSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDGLCRIWDTASGQCLKTLIDDDNPP  198 (231)
Q Consensus       122 ~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~  198 (231)
                      +|.++.+.+.  ...|++||+++++.+.........+..--+..-+.++ .-.-.+|.-..+|..+-+++..+...... 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc-
Confidence            3445555544  3469999999998766543321111111111223333 33456788889999888777766544332 


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         199 VSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       199 i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                       ..+  ..|++.|..+.....+.+-|
T Consensus       134 -WgL--t~d~~~LimsdGsatL~frd  156 (262)
T COG3823         134 -WGL--TSDDKNLIMSDGSATLQFRD  156 (262)
T ss_pred             -eee--ecCCcceEeeCCceEEEecC
Confidence             222  34455555554444554444

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=82.05  E-value=22  Score=27.58  Aligned_cols=196  Identities=13%  Similarity=0.180  Sum_probs=104.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCC------C-cEEEEEec-----ccccEEEEEECCCCC------------EE
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYD------G-KFEKTISG-----HKLGISDVAWSSDSR------------LL   84 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~------~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l   84 (231)
                      .-..++++|.+.+-++....+...+||...      . ...-.+..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            456899999998888877888999999851      1 12222321     123456666654322            25


Q ss_pred             EEecCCCcEEEEeCCCcee-----eeeecCC-Ccce-EEEEEC--CCCCEEEEe-ecCCcEEEEECCCCceeee------
Q psy4391          85 VSGSDDKTLKIWELSSGKC-----LKTLKGH-SNYV-FCCNFN--PQSNLIVSG-SFDESVRIWDVRTGKCLKT------  148 (231)
Q Consensus        85 ~~~~~~g~i~~~d~~~~~~-----~~~~~~~-~~~v-~~~~~~--~~~~~l~~~-~~d~~i~v~d~~~~~~~~~------  148 (231)
                      +.++++|+|.-|...-...     ...+... ...+ ..+++.  ..+.+|+.+ -.+++|.|||-.-.+....      
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            6788999999998642221     1122211 1222 233443  335566555 4578899998653322100      


Q ss_pred             -ccCCCCC--e---------EEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCC--CCCeEEEEEC------CCC
Q psy4391         149 -LPAHSDP--V---------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFS------PNG  208 (231)
Q Consensus       149 -~~~~~~~--v---------~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--~~~i~~~~~s------~~g  208 (231)
                       +.+.-.+  |         +-..-.+++..=+.+.--|.|.+||+. ++.++++....  ..+ ..|+..      ..|
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaP-WG~a~APa~FG~~sg  261 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAP-WGLAIAPESFGSLSG  261 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCC-ceeeeChhhhCCCCC
Confidence             1111111  1         001111222222233334689999986 45556553221  111 234443      357


Q ss_pred             CEEEEEeCCCeEEEEeCC
Q psy4391         209 KYILAATLDNTLKLWDSY  226 (231)
Q Consensus       209 ~~l~~~s~d~~v~vwd~~  226 (231)
                      .+|+.---||+|..||..
T Consensus       262 ~lLVGNFGDG~InaFD~~  279 (336)
T TIGR03118       262 ALLVGNFGDGTINAYDPQ  279 (336)
T ss_pred             CeEEeecCCceeEEecCC
Confidence            777776679999999964

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=80.38  E-value=28  Score=27.90  Aligned_cols=187  Identities=12%  Similarity=0.227  Sum_probs=98.4

Q ss_pred             CCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEE--ECCCCCE--EEEec-CC---CcEEEEeCC--Cceeeee
Q psy4391          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA--WSSDSRL--LVSGS-DD---KTLKIWELS--SGKCLKT  106 (231)
Q Consensus        37 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~--l~~~~-~~---g~i~~~d~~--~~~~~~~  106 (231)
                      |...+|+...+.+-+.+||+. ++.++.+......--++.  |.-.|+.  |+.++ .+   ..|++|.+.  ++. +..
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~  143 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTD  143 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceE
Confidence            345688888889999999985 555555542221111221  1223443  34443 32   368888765  333 222


Q ss_pred             ecC-------CCcceEEEEE--CC-CCC-EEEEeecCCcEEEEECC---CC----ceeeeccCCCCCeEEEEEcCCCCeE
Q psy4391         107 LKG-------HSNYVFCCNF--NP-QSN-LIVSGSFDESVRIWDVR---TG----KCLKTLPAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus       107 ~~~-------~~~~v~~~~~--~~-~~~-~l~~~~~d~~i~v~d~~---~~----~~~~~~~~~~~~v~~~~~~~~~~~l  168 (231)
                      +..       ....+..+++  ++ +|. +.+....+|.+..|.+.   .+    +.++.+.. ...+..+........|
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~L  222 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRL  222 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEE
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCE
Confidence            221       1122444444  44 454 44556778888877664   23    24556654 3467888888888899


Q ss_pred             EEEecCCeEEEEeCCCC--ceeeeeec----CCCCCeEEEEE--CCCCC-EEEEEeC-CCeEEEEeCC
Q psy4391         169 VSSSYDGLCRIWDTASG--QCLKTLID----DDNPPVSFVKF--SPNGK-YILAATL-DNTLKLWDSY  226 (231)
Q Consensus       169 ~~~~~dg~i~v~d~~~~--~~~~~~~~----~~~~~i~~~~~--s~~g~-~l~~~s~-d~~v~vwd~~  226 (231)
                      +.+-++.-|.-|+.+..  .....+..    .....+..|+.  .++|+ ||++++. ++...|||..
T Consensus       223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~  290 (381)
T PF02333_consen  223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE  290 (381)
T ss_dssp             EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred             EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence            99999988888887622  11111111    11223444544  44543 6666665 6799999964

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	231
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-116
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-116
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-116
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-115
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-115
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-115
2h9l_A	329	Wdr5delta23 Length = 329		1e-115
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-115
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-115
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-115
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-115
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-115
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-115
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-115
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-115
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-114
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-113
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		6e-37
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-34
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-31
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-30
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-25
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-20
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-25
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-24
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-10
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-24
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-22
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		7e-21
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-22
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-10
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-21
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-21
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-11
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-21
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-11
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-20
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-20
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-20
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-20
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-20
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-19
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		7e-19
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		8e-19
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-18
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-18
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-18
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-18
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		3e-18
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-18
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-18
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-18
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		6e-18
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-16
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-16
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		7e-16
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-15
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		4e-15
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		4e-07
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		5e-14
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-12
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-14
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-12
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		6e-14
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-12
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-13
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		7e-13
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-12
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		9e-12
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		5e-05
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		9e-12
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		5e-05
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		1e-11
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		5e-08
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		5e-11
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		7e-11
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		3e-10
3mmy_A	368	Structural And Functional Analysis Of The Interacti		3e-09
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-08
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		5e-07
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		4e-08
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		8e-04
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		1e-07
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		3e-07
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		6e-07
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		7e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		8e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-06
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		2e-06
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		2e-06
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		2e-06
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-06
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		4e-05
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		1e-04
1s4u_X	407	Crystal Structure Analysis Of The Beta-Propeller Pr		2e-04
1sq9_A	397	Structure Of Ski8p, A Wd Repeat Protein Involved In		2e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		5e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  413 bits (1062), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 35  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 94
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 95  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 214
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWD 242

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 37  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 96
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 97  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 156
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 216
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWD 244

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  412 bits (1059), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 19  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 79  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWD 226

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 18  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 77
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 78  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 137
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 138 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 197
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLWD 225

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 30  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 89
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 90  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 149
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 209
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLWD 237

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 19  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 79  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWD 226

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  411 bits (1056), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 13  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 73  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWD 220

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  411 bits (1056), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 14  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 73
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 74  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 133
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 134 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 193
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLWD 221

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  410 bits (1055), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 13  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 73  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 192
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLWD 220

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  410 bits (1055), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/208 (96%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLA+SSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16  YALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  410 bits (1054), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 19  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 79  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 138
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 198
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLWD 226

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  410 bits (1054), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 9   YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 68
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 69  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 128
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 188
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLWD 216

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  410 bits (1053), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/208 (97%), Positives = 205/208 (98%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 12  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 71
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 72  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 131
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 132 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 191
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 192 PPVSFVKFSPNGKYILAATLDNTLKLWD 219

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  407 bits (1047), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/208 (96%), Positives = 203/208 (97%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y L FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16  YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TG CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDNTLKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLWD 223

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  405 bits (1040), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/208 (95%), Positives = 202/208 (97%)
Query: 17  YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 76
           Y L FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA
Sbjct: 16  YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           WSSDS LLVS SDDKTLKIW++SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
           IWDV+TG CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 195
Query: 197 PPVSFVKFSPNGKYILAATLDNTLKLWD 224
           PPVSFVKFSPNGKYILAATLDN LKLWD
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLWD 223

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  150 bits (379), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/208 (40%), Positives = 131/208 (62%), Gaps = 5/208 (2%)
Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
           TL GH+ +V  V FSP+G+ +AS+S DK +K+W   +G+  +T++GH   +  VA+S D 
Sbjct: 93  TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 151
Query: 82  RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
           + + S SDDKT+K+W   +G+ L+TL GHS+ V+   F+P    I S S D++V++W+ R
Sbjct: 152 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-R 209
Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
            G+ L+TL  HS  V  V F+ DG  I S+S D   ++W+  +GQ L+TL    +  V+ 
Sbjct: 210 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVNG 267
Query: 202 VKFSPNGKYILAATLDNTLKLWDSYPCL 229
           V F P+G+ I +A+ D T+KLW+    L
Sbjct: 268 VAFRPDGQTIASASDDKTVKLWNRNGQL 295

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 21/225 (9%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
           K+ L+GH   V+ V F P    + S+S D  IK+W    G FE+T+ GH   + D+++  
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
             +LL S S D T+K+W+    +C++T+ GH + V   +  P  + IVS S D+++++W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
           V+TG C+KT   H + V  V  N+DG+LI S S D   R+W  A+ +C K  + +    V
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVV 279
Query: 200 SFVKFSPN--------------------GKYILAATLDNTLKLWD 224
             + ++P                     G ++L+ + D T+K+WD
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 120/205 (58%), Gaps = 16/205 (7%)
Query: 23  LAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
           L GH    ++ ++F  N   + S S D  +K+W A  GK  +T+ GH  G+    WSS  
Sbjct: 114 LKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQM 167
Query: 82  R--LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
           R  +++SGS D+TLK+W   +G+C+ TL GH++ V C + + +   +VSGS D ++R+WD
Sbjct: 168 RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWD 225
Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
           + TG+CL  L  H   V  V +  DG  +VS +YD + ++WD  +  CL TL    N   
Sbjct: 226 IETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY 283
Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
           S  +F  +G ++++ +LD ++++WD
Sbjct: 284 SL-QF--DGIHVVSGSLDTSIRVWD 305

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 120/206 (58%), Gaps = 8/206 (3%)
Query: 23  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
           L GH+  VS V  S NG +  S+S D  +++W   +G+ +    GH   +  VA+S D+R
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNPQ--SNLIVSGSFDESVRIW 138
            +VSG  D  L++W +  G+C+ TL    H+++V C  F+P   + +IVSG +D  V++W
Sbjct: 123 QIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
           D+ TG+ +  L  H++ V++V  + DGSL  SS  DG+ R+WD   G+ L  +      P
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA--AGAP 239
Query: 199 VSFVKFSPNGKYILAATLDNTLKLWD 224
           ++ + FSPN +Y + A  +  ++++D
Sbjct: 240 INQICFSPN-RYWMCAATEKGIRIFD 264

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 99/172 (57%), Gaps = 17/172 (9%)
Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
           L+  L GH  AV+ V F  + +++ S+S D+ IK+W     +F +T++GHK GI+ + + 
Sbjct: 248 LRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 305
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
              RL+VSGS D T+++W++  G CL+ L+GH   V C  F+ +   IVSG++D  +++W
Sbjct: 306 D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVW 361
Query: 139 DVRTG---------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           D+             CL+TL  HS  V  + F  D   IVSSS+D    IWD
Sbjct: 362 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 89/151 (58%), Gaps = 8/151 (5%)
Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
           D + +VSG  D T+KIW+ ++ +C + L GH+  V C  ++ +  +I++GS D +VR+WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWD 199
Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 197
           V TG+ L TL  H + V  + FN    ++V+ S D    +WD AS     L+ ++     
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257
Query: 198 PVSFVKFSPNGKYILAATLDNTLKLWDSYPC 228
            V+ V F  + KYI++A+ D T+K+W++  C
Sbjct: 258 AVNVVDF--DDKYIVSASGDRTIKVWNTSTC 286

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 27/224 (12%)
Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------------------G 67
           HT  V  VKFS +GE+LA+   +K  +++   DG     +S                   
Sbjct: 63  HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 68  HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 127
             L I  V +S D + L +G++D+ ++IW++ + K +  L+GH   ++  ++ P  + +V
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 128 SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
           SGS D +VRIWD+RTG+C  TL       +      DG  I + S D   R+WD+ +G  
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 188 LKTLIDDDNP-------PVSFVKFSPNGKYILAATLDNTLKLWD 224
           ++ L D +N         V  V F+ +G+ +++ +LD ++KLW+
Sbjct: 242 VERL-DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
           +  +  HT AV    FS +G+ +AS  ADK ++++ A  G+    I  H+  +   A+SS
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 667
Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 137
           D   + + S DK +KIW+ ++GK + T   HS  V CC+F  +SN  L+ +GS D  +++
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL------ 191
           WD+   +C  T+  H++ V+   F+ D  L+ S S DG  R+WD  S    K++      
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 192 IDDDNPP------VSFVKFSPNGKYILAATLDNTL 220
           +  ++PP      V    +S +G  I+ A  +  L
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
            ++ H++ V+   F+     I S   D++++++   TG+ L  + AH D V    F+ D 
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT--LKLW 223
           S I + S D   +IWD+A+G+ + T  D+ +  V+   F+    ++L AT  N   LKLW
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 224 D 224
           D
Sbjct: 729 D 729

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
           +  +  HT AV    FS +G+ +AS  ADK ++++ A  G+    I  H+  +   A+SS
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 674
Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRI 137
           D   + + S DK +KIW+ ++GK + T   HS  V CC+F  +SN  L+ +GS D  +++
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL------ 191
           WD+   +C  T+  H++ V+   F+ D  L+ S S DG  R+WD  S    K++      
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 192 IDDDNPP------VSFVKFSPNGKYILAATLDNTL 220
           +  ++PP      V    +S +G  I+ A  +  L
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 829

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
            ++ H++ V+   F+     I S   D++++++   TG+ L  + AH D V    F+ D 
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT--LKLW 223
           S I + S D   +IWD+A+G+ + T  D+ +  V+   F+    ++L AT  N   LKLW
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 224 D 224
           D
Sbjct: 736 D 736

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 128/262 (48%), Gaps = 60/262 (22%)
Query: 18  VLKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWG------AYDGKFEKTISGHK 69
           VLK T+  HT  V+++  +P  N + + S+S DK I +W       AY G  ++ ++GH 
Sbjct: 373 VLKGTMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAY-GVAQRRLTGHS 430
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSS----------------------------- 100
             + DV  SSD +  +SGS D  L++W+L++                             
Sbjct: 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 101 ------------GKCLKTL----KGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVRT 142
                       G+C  T+    +GH ++V C  F+P +    IVS S+D++V++W++  
Sbjct: 491 SRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN 550
Query: 143 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 202
            K   TL  H+  VS V  + DGSL  S   DG+  +WD A G+ L +L  + N  +  +
Sbjct: 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL--EANSVIHAL 608
Query: 203 KFSPNGKYILAATLDNTLKLWD 224
            FSPN +Y L A  ++ +K+WD
Sbjct: 609 CFSPN-RYWLCAATEHGIKIWD 629

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 101 GKCLK-TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIW-----DVRTGKCLKTLPAH 152
           G  LK T++ H++ V      P  N  +IVS S D+S+ +W     D   G   + L  H
Sbjct: 371 GLVLKGTMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH 429
Query: 153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
           S  V  V  + DG   +S S+DG  R+WD A+G   +  +      +S V FS + + I+
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS-VAFSLDNRQIV 488
Query: 213 AATLDNTLKLWDS 225
           +A+ D T+KLW++
Sbjct: 489 SASRDRTIKLWNT 501

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 91/173 (52%)
Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
           L+++L GH   V SV  S      ASSS D  I++W   +GK  K+I    +    +A+S
Sbjct: 72  LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS 131
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
            DS+ L +G+    + I+ + SGK   +L     ++    ++P    + SG+ D  + I+
Sbjct: 132 PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIF 191
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
           D+ TGK L TL  H+ P+ ++ F+ D  L+V++S DG  +I+D        TL
Sbjct: 192 DIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 19  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 72
           L+ TL GH   V+ +  +P   + + S+S DK I +W         G  ++ + GH   +
Sbjct: 30  LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 73  SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 132
           SDV  SSD +  +SGS D TL++W+L++G   +   GH+  V    F+  +  IVSGS D
Sbjct: 90  SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 133 ESVRIWDVRTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 188
           +++++W+   G C  T+   +HS+ VS V F  N    +IVS  +D L ++W+ A+ + L
Sbjct: 150 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 207
Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           KT        ++ V  SP+G    +   D    LWD
Sbjct: 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 106 TLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIW-----DVRTGKCLKTLPAHSDPVSAV 159
           TLKGH+ +V      PQ  ++I+S S D+++ +W     +   G   + L  HS  VS V
Sbjct: 33  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 160 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 219
             + DG   +S S+DG  R+WD  +G   +  +      +S V FS + + I++ + D T
Sbjct: 93  VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKT 151
Query: 220 LKLWDS 225
           +KLW++
Sbjct: 152 IKLWNT 157

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 113/216 (52%), Gaps = 12/216 (5%)
Query: 19  LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGI 72
           L+ TL GH   V+ +  +P   + + S+S DK I +W         G  ++ + GH   +
Sbjct: 7   LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 73  SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 132
           SDV  SSD +  +SGS D TL++W+L++G   +   GH+  V    F+  +  IVSGS D
Sbjct: 67  SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 133 ESVRIWDVRTGKCLKTL--PAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQCL 188
           +++++W+   G C  T+   +HS+ VS V F  N    +IVS  +D L ++W+ A+ + L
Sbjct: 127 KTIKLWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-L 184
Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           KT        ++ V  SP+G    +   D    LWD
Sbjct: 185 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 106 TLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIW-----DVRTGKCLKTLPAHSDPVSAV 159
           TLKGH+ +V      PQ  ++I+S S D+++ +W     +   G   + L  HS  VS V
Sbjct: 10  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 160 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 219
             + DG   +S S+DG  R+WD  +G   +  +      +S V FS + + I++ + D T
Sbjct: 70  VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKT 128
Query: 220 LKLWDS 225
           +KLW++
Sbjct: 129 IKLWNT 134

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18  VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIW--GAYDGKFE---KTISGHK 69
           VL+ TL GH   V+S+  S   PN   L S+S DK +  W     D KF    ++  GH 
Sbjct: 2   VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 59
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
             + D   ++D    +S S DKTL++W++++G+  +   GH + V   + + ++++I+SG
Sbjct: 60  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 119
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
           S D+++++W ++ G+CL TL  H+D VS V        + D   I+S+  D + + W+  
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             Q     I   N  ++ +  SP+G  I +A  D  + LW+
Sbjct: 179 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 218

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18  VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIW--GAYDGKFE---KTISGHK 69
           VL+ TL GH   V+S+  S   PN   L S+S DK +  W     D KF    ++  GH 
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
             + D   ++D    +S S DKTL++W++++G+  +   GH + V   + + ++++I+SG
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
           S D+++++W ++ G+CL TL  H+D VS V        + D   I+S+  D + + W+  
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             Q     I   N  ++ +  SP+G  I +A  D  + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18  VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIW--GAYDGKFE---KTISGHK 69
           VL+ TL GH   V+S+  S   PN   L S+S DK +  W     D KF    ++  GH 
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
             + D   ++D    +S S DKTL++W++++G+  +   GH + V   + + ++++I+SG
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
           S D+++++W ++ G+CL TL  H+D VS V        + D   I+S+  D + + W+  
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             Q     I   N  ++ +  SP+G  I +A  D  + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18  VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIW--GAYDGKFE---KTISGHK 69
           VL+ TL GH   V+S+  S   PN   L S+S DK +  W     D KF    ++  GH 
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
             + D   ++D    +S S DKTL++W++++G+  +   GH + V   + + ++++I+SG
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
           S D+++++W ++ G+CL TL  H+D VS V        + D   I+S+  D + + W+  
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             Q     I   N  ++ +  SP+G  I +A  D  + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 18/221 (8%)
Query: 18  VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIW--GAYDGKFE---KTISGHK 69
           VL+ TL GH   V+S+  S   PN   L S+S DK +  W     D KF    ++  GH 
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
             + D   ++D    +S S DKTL++W++++G+  +   GH + V   + + ++++I+SG
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
           S D+++++W ++ G+CL TL  H+D VS V        + D   I+S+  D + + W+  
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             Q     I   N  ++ +  SP+G  I +A  D  + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 18/221 (8%)
Query: 18  VLKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIKIW--GAYDGKFE---KTISGHK 69
           VL+ TL GH   V+S+  S   PN   L S+S DK +  W     D KF    ++  GH 
Sbjct: 8   VLRGTLEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS 65
Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
             + D   ++D    +S S DKTL++W++++G+  +   GH + V   + + +++ I+SG
Sbjct: 66  HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISG 125
Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF------NRDGSLIVSSSYDGLCRIWDTA 183
           S D+++++W ++ G+CL TL  H+D VS V        + D   I+S+  D   + W+  
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             Q     I   N  ++ +  SP+G  I +A  D  + LW+
Sbjct: 185 QFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLWN 224

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 11/204 (5%)
Query: 33  VKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSD 89
           + ++P G  LAS   D+ I+IWG   D    K++   GH+  +  VAWS     L S S 
Sbjct: 22  LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 90  DKTLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG---K 144
           D T  IW+ +    +C+ TL+GH N V    + P  NL+ + S D+SV +W+V      +
Sbjct: 82  DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 145 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFV 202
           C+  L +H+  V  V ++    L+ S+SYD   +++        C  TL +     V  +
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSL 200
Query: 203 KFSPNGKYILAATLDNTLKLWDSY 226
            F P+G+ + + + D T+++W  Y
Sbjct: 201 AFDPSGQRLASCSDDRTVRIWRQY 224

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 111/240 (46%), Gaps = 33/240 (13%)
Query: 18  VLKFTLAGHTKAVSSV------KFSPNGEWLASSSADKLIKIWGAYD----GKF---EKT 64
           V +  L GH+  V+S+      K + +   L S S DK + IW  Y+    G F    K 
Sbjct: 12  VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA 71
Query: 65  ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN 124
           ++GH   +SD+A S ++   +S S DKTL++W+L +G   K   GH + V+   F+P + 
Sbjct: 72  LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 125 LIVSGSFDESVRIWDVRTGKCL---KTLPAHSDPVSAVHF----------NRDGSLIVSS 171
            I+S   +  +++W++  G+C         HSD VS V +                  S 
Sbjct: 132 QILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV 190
Query: 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----SYP 227
            +DG  ++W+T     ++         V+ +  SPNGKYI     D  L +WD    +YP
Sbjct: 191 GWDGRLKVWNT--NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP 248

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 114/231 (49%), Gaps = 32/231 (13%)
Query: 20  KFTLAGH-TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
           + TL GH T  ++ ++F  N  ++ + + DK+I+++ + + KF   +SGH  G+  + ++
Sbjct: 114 RTTLRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 171
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL--IVSGSFDESVR 136
               +LVSGS D+T+++W++  G C    +GH++ V C +     N+  IV+GS D ++ 
Sbjct: 172 HGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 137 IWDV-----------------------RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 173
           +W +                            +  L  H   V  V  +  G+++VS SY
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSY 288
Query: 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           D    +WD A  +CL  L    +   S + +    K  ++A++D T+++WD
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCISASMDTTIRIWD 338

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIW-----GAYDGKF--EKTISGHKLGISDVAWS 78
           H   V    F+PNG+ +A    D    I+        DG     + ++GHK   S   + 
Sbjct: 107 HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYV 166
Query: 79  SDSRL-LVSGSDDKTLKIWELSSGKCLKTL-----KGHSNYVFCCNFNP-QSNLIVSGSF 131
            D    L++GS D+T  +W++++G+ +         GH+  V   + N   +N+ +SGS 
Sbjct: 167 PDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC 226
Query: 132 DESVRIWDVR-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 190
           D +VR+WD+R T + ++T   H   +++V F  DG    + S DG CR++D  +G  L+ 
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Query: 191 L------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
                   D++ P V+ V FS +G+ + A   +    +WD+
Sbjct: 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN 162
           C +TL+GHS  V+  ++ P+ N IVS S D  + +W+  T +    +  H   V    F 
Sbjct: 58  CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV-----------KFSPNGK-Y 210
            +G  +     D  C I++ +S         D N PVS V           ++ P+ +  
Sbjct: 118 PNGQSVACGGLDSACSIFNLSS-----QADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 211 ILAATLDNTLKLWD 224
           ++  + D T  LWD
Sbjct: 173 LITGSGDQTCVLWD 186

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 30  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSRLLV 85
           V +  ++P+G ++A    D +  I+     +G  +  + ++GH   +S   +  D++++ 
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 86  SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
           S S D T  +W++ +G+   T  GH+  V   +  P + L VSG+ D S ++WDVR G C
Sbjct: 160 S-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 204
            +T   H   ++A+ F  +G+   + S D  CR++D  + Q L T   D+    ++ V F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278
Query: 205 SPNGKYILAATLDNTLKLWDS 225
           S +G+ +LA   D    +WD+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDA 299

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 30  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSRLLV 85
           V +  ++P+G ++A    D +  I+     +G  +  + ++GH   +S   +  D++++ 
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 86  SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
           S S D T  +W++ +G+   T  GH+  V   +  P + L VSG+ D S ++WDVR G C
Sbjct: 160 S-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 204
            +T   H   ++A+ F  +G+   + S D  CR++D  + Q L T   D+    ++ V F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278
Query: 205 SPNGKYILAATLDNTLKLWDS 225
           S +G+ +LA   D    +WD+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDA 299

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 30  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSRLLV 85
           V +  ++P+G ++A    D +  I+     +G  +  + ++GH   +S   +  D++++ 
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 86  SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
           S S D T  +W++ +G+   T  GH+  V   +  P + L VSG+ D S ++WDVR G C
Sbjct: 160 S-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 204
            +T   H   ++A+ F  +G+   + S D  CR++D  + Q L T   D+    ++ V F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278
Query: 205 SPNGKYILAATLDNTLKLWDS 225
           S +G+ +LA   D    +WD+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDA 299

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 30  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSRLLV 85
           V +  ++P+G ++A    D +  I+     +G  +  + ++GH   +S   +  D++++ 
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 170
Query: 86  SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
           S S D T  +W++ +G+   T  GH+  V   +  P + L VSG+ D S ++WDVR G C
Sbjct: 171 S-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 229
Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 204
            +T   H   ++A+ F  +G+   + S D  CR++D  + Q L T   D+    ++ V F
Sbjct: 230 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 289
Query: 205 SPNGKYILAATLDNTLKLWDS 225
           S +G+ +LA   D    +WD+
Sbjct: 290 SKSGRLLLAGYDDFNCNVWDA 310

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 30  VSSVKFSPNGEWLASSSADKLIKIWG--AYDG--KFEKTISGHKLGISDVAWSSDSRLLV 85
           V +  ++P+G ++A    D +  I+     +G  +  + ++GH   +S   +  D++++ 
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159
Query: 86  SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
           S S D T  +W++ +G+   T  GH+  V   +  P + L VSG+ D S ++WDVR G C
Sbjct: 160 S-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218
Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 204
            +T   H   ++A+ F  +G+   + S D  CR++D  + Q L T   D+    ++ V F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278
Query: 205 SPNGKYILAATLDNTLKLWDS 225
           S +G+ +LA   D    +WD+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDA 299

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 5/208 (2%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI--SDVAW 77
           K ++A HT  +S+  F+ +   + ++S D    +W    G+  ++  GH   +   D+A 
Sbjct: 147 KKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP 206
Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 137
           S      VSG  DK   +W++ SG+C++  + H + V    + P  +   SGS D + R+
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 138 WDVRTGKCLKTLPAHSD--PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
           +D+R  + +      S     S+V F+  G L+ +   D    +WD   G  +  L   +
Sbjct: 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 326
Query: 196 NPPVSFVKFSPNGKYILAATLDNTLKLW 223
           N  VS ++ SP+G    + + D+TL++W
Sbjct: 327 N-RVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 31/230 (13%)
Query: 21  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS--DVAWS 78
             L+GH   V ++K++ +G  L S S D+ +++W    G       GH   +   D+   
Sbjct: 156 LQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLK-----------------------TLKGHSNYVF 115
            + + +V+GS D TL +W+L     +                         L+GH   V 
Sbjct: 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVR 274
Query: 116 CCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 175
             +     N++VSGS+D ++ +WDV   KCL  L  H+D + +  ++ +    +S+S D 
Sbjct: 275 TVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
             RIWD  +G+   TL       V  ++ S   K++++A  D +++ WD+
Sbjct: 333 TIRIWDLENGELXYTL-QGHTALVGLLRLSD--KFLVSAAADGSIRGWDA 379

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 6/201 (2%)
Query: 30  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
           V + KF     W+   S D  I+++    G+       H   I  +A       ++SGSD
Sbjct: 58  VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 90  DKTLKIWELSSGKCL-KTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLK 147
           D T+K+W   +   L +T +GH ++V C  FNP+  +   SG  D +V++W +       
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 148 TLPAHSDP-VSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 204
           TL    +  V+ V +    D   ++++S D   +IWD  +  C+ TL +     VSF  F
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVF 236
Query: 205 SPNGKYILAATLDNTLKLWDS 225
            P    I++ + D TLK+W+S
Sbjct: 237 HPTLPIIISGSEDGTLKIWNS 257

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 6/201 (2%)
Query: 30  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
           V + KF     W+   S D  I+++    G+       H   I  +A       ++SGSD
Sbjct: 58  VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 90  DKTLKIWELSSGKCL-KTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLK 147
           D T+K+W   +   L +T +GH ++V C  FNP+  +   SG  D +V++W +       
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 148 TLPAHSDP-VSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 204
           TL    +  V+ V +    D   ++++S D   +IWD  +  C+ TL +     VSF  F
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVF 236
Query: 205 SPNGKYILAATLDNTLKLWDS 225
            P    I++ + D TLK+W+S
Sbjct: 237 HPTLPIIISGSEDGTLKIWNS 257

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 6/201 (2%)
Query: 30  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
           V + KF     W+   S D  I+++    G+       H   I  +A       ++SGSD
Sbjct: 58  VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 90  DKTLKIWELSSGKCL-KTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLK 147
           D T+K+W   +   L +T +GH ++V C  FNP+  +   SG  D +V++W +       
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 148 TLPAHSDP-VSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 204
           TL    +  V+ V +    D   ++++S D   +IWD  +  C+ TL +     VSF  F
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVF 236
Query: 205 SPNGKYILAATLDNTLKLWDS 225
            P    I++ + D TLK+W+S
Sbjct: 237 HPTLPIIISGSEDGTLKIWNS 257

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 6/201 (2%)
Query: 30  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
           V + KF     W+   S D  I+++    G+       H   I  +A       ++SGSD
Sbjct: 58  VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117
Query: 90  DKTLKIWELSSGKCL-KTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLK 147
           D T+K+W   +   L +T +GH ++V C  FNP+  +   SG  D +V++W +       
Sbjct: 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 148 TLPAHSDP-VSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 204
           TL    +  V+ V +    D   ++++S D   +IWD  +  C+ TL +     VSF  F
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSNVSFAVF 236
Query: 205 SPNGKYILAATLDNTLKLWDS 225
            P    I++ + D TLK+W+S
Sbjct: 237 HPTLPIIISGSEDGTLKIWNS 257

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Query: 23  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWS 78
           + GH   V  V +S +G +LA+ S DK + IW   +   E      +  H   +  V W 
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 79  SDSRLLVSGSDDKTLKIWE--LSSGKCLKTLKGHSNYVFCCNFNPQSNL--IVSGSFDES 134
               LL S S D T++IW+      +C+  L GH   V+  +F+    +  + SGS D +
Sbjct: 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222
Query: 135 VRIW--------DVRTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 185
           VR+W        D +   C   LP  H   V  V +  +G LI S   DG+  +++   G
Sbjct: 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281
Query: 186 Q---CLKTLIDDDNPPVSFVKF-SPNGKYILAATLDNTL 220
           +     K  +      ++ VK+   NGK ILA   D+ +
Sbjct: 282 EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGI 320

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-------CLKTLPAHSDPVSAVHF 161
            H   +    + P ++L+ +GSFD +V IW              L  +  H + V  V +
Sbjct: 56  AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 162 NRDGSLIVSSSYDGLCRIWDT-ASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLDN 218
           + DG  + + S D    IW+T  SG+  +  +++ + +  V  V + P+   + +++ D+
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 219 TLKLWDSY 226
           T+++W  Y
Sbjct: 176 TVRIWKDY 183

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAW 77
           TL+GH++ V  ++++P+G  LAS   D L+ +W +  G+      +T + H+  +  VAW
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 78  SS-DSRLLVS--GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FD 132
               S +L +  G+ D+ ++IW + SG CL  +  HS  V    ++P    ++SG     
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 354
Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
             + IW   T   +  L  H+  V ++  + DG+ + S++ D   R+W
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 9/175 (5%)
Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC----LKTLKGHSNYVFCCNF 119
           T+SGH   +  + W+ D R L SG +D  + +W  + G+     L+T   H   V    +
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 120 NP-QSNLIVSG--SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG 175
            P QSN++ +G  + D  +RIW+V +G CL  + AHS   S +       LI    +   
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN 355
Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLP 230
              IW   +   +  L    +  +S    SP+G  + +A  D TL+LW  +   P
Sbjct: 356 QLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGATVASAAADETLRLWRCFELDP 409

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAW 77
           TL+GH++ V  ++++P+G  LAS   D L+ +W +  G+      +T + H+  +  VAW
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 78  SS-DSRLLVS--GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FD 132
               S +L +  G+ D+ ++IW + SG CL  +  HS  V    ++P    ++SG     
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 343
Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
             + IW   T   +  L  H+  V ++  + DG+ + S++ D   R+W
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 9/175 (5%)
Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC----LKTLKGHSNYVFCCNF 119
           T+SGH   +  + W+ D R L SG +D  + +W  + G+     L+T   H   V    +
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 120 NP-QSNLIVSG--SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG 175
            P QSN++ +G  + D  +RIW+V +G CL  + AHS   S +       LI    +   
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN 344
Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLP 230
              IW   +   +  L    +  +S    SP+G  + +A  D TL+LW  +   P
Sbjct: 345 QLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGATVASAAADETLRLWRCFELDP 398

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAW 77
           TL+GH++ V  ++++P+G  LAS   D L+ +W +  G+      +T + H+  +  VAW
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 78  SS-DSRLLVS--GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FD 132
               S +L +  G+ D+ ++IW + SG CL  +  HS  V    ++P    ++SG     
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQ 263
Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
             + IW   T   +  L  H+  V ++  + DG+ + S++ D   R+W
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 9/175 (5%)
Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC----LKTLKGHSNYVFCCNF 119
           T+SGH   +  + W+ D R L SG +D  + +W  + G+     L+T   H   V    +
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 120 NP-QSNLIVSG--SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DG 175
            P QSN++ +G  + D  +RIW+V +G CL  + AHS   S +       LI    +   
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN 264
Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLP 230
              IW   +   +  L    +  +S    SP+G  + +A  D TL+LW  +   P
Sbjct: 265 QLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGATVASAAADETLRLWRCFELDP 318

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 23/180 (12%)
Query: 65  ISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELSSG-------KCLKTLKGHSNYVFC 116
           + GH   + D+AW   +  ++ SGS+D T+ +WE+  G       + + TL+GH+  V  
Sbjct: 77  VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 117 CNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSY 173
             ++P + N+++S   D  + +WDV TG  + TL    H D + +V ++RDG+LI +S  
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Query: 174 DGLCRIWDTASGQCLKTLIDDDNP-----PVSFVKFSPNGKYI---LAATLDNTLKLWDS 225
           D   R+ +   G  +    + D P     PV  V F   GK +    +   +  + LWD+
Sbjct: 197 DKRVRVIEPRKGTVVA---EKDRPHEGTRPVHAV-FVSEGKILTTGFSRMSERQVALWDT 252

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 26/189 (13%)
Query: 59  GKFEKTIS---GHKLGISDVAW-SSDSRLLVSGSDDKTLKIWELSSG-------KCLKTL 107
           G+ +K +    GH   + D+AW   +  ++ SGS+D T+ +WE+  G       + + TL
Sbjct: 68  GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL 127
Query: 108 KGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRD 164
           +GH+  V    ++P + N+++S   D  + +WDV TG  + TL    H D + +V ++RD
Sbjct: 128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187
Query: 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-----PVSFVKFSPNGKYI---LAATL 216
           G+LI +S  D   R+ +   G     + + D P     PV  V F   GK +    +   
Sbjct: 188 GALICTSCRDKRVRVIEPRKG---TVVAEKDRPHEGTRPVHAV-FVSEGKILTTGFSRMS 243
Query: 217 DNTLKLWDS 225
           +  + LWD+
Sbjct: 244 ERQVALWDT 252

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 11/210 (5%)
Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRL 83
           H+   +  K SP+G + AS      ++IW         + TI      + D++W S+S+ 
Sbjct: 58  HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 84  L--VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDV 140
           +  V    ++   ++   +G     L G +  +   +F P     I+SGS D +V I++ 
Sbjct: 118 IAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177
Query: 141 RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 200
              K   T   H+  V +V +N DGSL  S+  DG   +++   G       DD    V+
Sbjct: 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237
Query: 201 F------VKFSPNGKYILAATLDNTLKLWD 224
                  + +SP+G  I +A+ D T+K+W+
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWN 267

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 30/226 (13%)
Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL 84
            H   ++ +KF P+GE L SSS D  +KIW   DG   +T+ GH+  ++D+A     R +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 85  VSGSDDKTLKIWELSSGKCLKTLKGHSN--------YVFC----------------CNFN 120
           +S S D T+++WE  +G  + T     N         +F                   F 
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 253
Query: 121 PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG---SLIVSSSYDGLC 177
                +++G     + + +V + +    LP+     S      DG   + I +   +G+ 
Sbjct: 254 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF-TCSCNSLTVDGNNANYIYAGYENGML 312
Query: 178 RIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 222
             WD  S +C +   + ++  P++ V F+  G   +++  D ++KL
Sbjct: 313 AQWDLRSPECPVGEFLINEGTPINNVYFAA-GALFVSSGFDTSIKL 357

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 122 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           Q    + G+ +  +++ D       +   AH   ++ + F   G  ++SSS D   +IW 
Sbjct: 105 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 164
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
              G   +TLI      V+ +     G+ +L+A+LD T++LW+
Sbjct: 165 VKDGSNPRTLIGH-RATVTDIAIIDRGRNVLSASLDGTIRLWE 206

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 30/226 (13%)
Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL 84
            H   ++ +KF P+GE L SSS D  +KIW   DG   +T+ GH+  ++D+A     R +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 85  VSGSDDKTLKIWELSSGKCLKTLKGHSN--------YVFC----------------CNFN 120
           +S S D T+++WE  +G  + T     N         +F                   F 
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256
Query: 121 PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG---SLIVSSSYDGLC 177
                +++G     + + +V + +    LP+     S      DG   + I +   +G+ 
Sbjct: 257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF-TCSCNSLTVDGNNANYIYAGYENGML 315
Query: 178 RIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 222
             WD  S +C +   + ++  P++ V F+  G   +++  D ++KL
Sbjct: 316 AQWDLRSPECPVGEFLINEGTPINNVYFAA-GALFVSSGFDTSIKL 360

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 122 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           Q    + G+ +  +++ D       +   AH   ++ + F   G  ++SSS D   +IW 
Sbjct: 108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 167
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
              G   +TLI      V+ +     G+ +L+A+LD T++LW+
Sbjct: 168 VKDGSNPRTLIGH-RATVTDIAIIDRGRNVLSASLDGTIRLWE 209

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 15/168 (8%)
Query: 19  LKFTLAGHTKAV---SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISD 74
           L + L  H  +V     V FS N     ++SADK IK+W   + K  KT SG H   +  
Sbjct: 134 LVYNLQAHNASVWDAKVVSFSENK--FLTASADKTIKLW--QNDKVIKTFSGIHNDVVRH 189
Query: 75  VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
           +A   D    +S S+D  +K+ +  +G  L+T +GH ++V+C    P  +++  G  D +
Sbjct: 190 LAVVDDGHF-ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRT 247
Query: 135 VRIWDVRTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
           VRIW    G  K + TLPA S  + +V    +G +IV SS D L RI+
Sbjct: 248 VRIWSKENGSLKQVITLPAIS--IWSVDCXSNGDIIVGSS-DNLVRIF 292

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 11/162 (6%)
Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS 123
           T+ GH+  +  +++     +++SGS DKT K+W+   G  +  L+ H+  V+       S
Sbjct: 99  TLIGHQGNVCSLSFQDG--VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS 154
Query: 124 -NLIVSGSFDESVRIWDVRTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
            N  ++ S D+++++W  +  K +KT    H+D V  +    DG  I S S DGL ++ D
Sbjct: 155 ENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVD 211
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 223
             +G  L+T  +     V  +K  PNG  I++   D T+++W
Sbjct: 212 XHTGDVLRTY-EGHESFVYCIKLLPNGD-IVSCGEDRTVRIW 251

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 8/211 (3%)
Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 80
           T+AGH   V  + +  N   L+S S    I          +  T+ GH   +  +AW SD
Sbjct: 171 TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD 228
Query: 81  SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSG--SFDESVRI 137
              L SG +D  ++IW+  S     T   H+  V    + P QSNL+ +G  + D+ +  
Sbjct: 229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288
Query: 138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGLCRIWD-TASGQCLKTLIDDD 195
           W+  TG  + T+ A S   S +       ++ +  + D    IW  ++SG   +  I   
Sbjct: 289 WNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH 348
Query: 196 NPPVSFVKFSPNGKYILAATLDNTLKLWDSY 226
           +  V +   SP+G+ +  A  D  LK W  Y
Sbjct: 349 DTRVLYSALSPDGRILSTAASDENLKFWRVY 379

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 28/185 (15%)
Query: 26  HTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGK------FEKTISGHKLGISDVAWS 78
           H  +V +V++ P+   +  SSS DK +K+W     +      FE+T+  H +       S
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMS----PVS 153
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRI 137
           +   L+  G+    +++ +L SG C   L+GH   +   +++P+ + I+ + S D  V++
Sbjct: 154 TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKL 213
Query: 138 WDVRTGK-CLKTL---------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           WDVR    CL TL                AH+  V+ + F  DG  +++   D   R+W+
Sbjct: 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Query: 182 TASGQ 186
           +++G+
Sbjct: 274 SSNGE 278

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 98/223 (43%), Gaps = 25/223 (11%)
Query: 23  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-- 80
           L GH + ++ VK++  G+ L S S D    +W + +G+   T+ GH    +   WS D  
Sbjct: 28  LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGH----TGTIWSIDVD 83
Query: 81  --SRLLVSGSDDKTLKIWELSSGKCLKTLKG-----HSNYVFCCNF----------NPQS 123
             ++  V+GS D ++K+W++S+G+C+ T K         +  C N+          NP S
Sbjct: 84  CFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143
Query: 124 NLIVSGSFDESVRIWDVRTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
             I     D +       + + +  +  H   D  +   ++  G  I++   DG    +D
Sbjct: 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYD 203
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
            ++       ID     +S ++FSP+  Y + ++ D    L D
Sbjct: 204 VSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 114 VFCCNFNPQS---NLIVSGSFDESVRIWDVR-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 168
           + C +F+P +   N +++GS+   VR W+V+ +G+ + K    H+ PV  V ++ DGS +
Sbjct: 42  IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 169 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDS 225
            ++S D   ++WD +S Q ++  I   + PV  + +  +PN   ++  + D TLK WD+
Sbjct: 102 FTASCDKTAKMWDLSSNQAIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 24/223 (10%)
Query: 18  VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHK---- 69
           VL F    H   + SVK++ +G  + S   + +  +W    G     FE   +G      
Sbjct: 144 VLNF----HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199
Query: 70  --------LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP 121
                   LG+ DV W  D + ++ G       +++++       L GH   +    FN 
Sbjct: 200 ENHSGDGSLGV-DVEWVDDDKFVIPGPKGAIF-VYQITEKTPTGKLIGHHGPISVLEFND 257
Query: 122 QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
            + L++S S D ++RIW    G        HS  + +  +  D   ++S S DG  R+W 
Sbjct: 258 TNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWS 316
Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
                 L   I  D  P+   + S +G+    A +D  + ++D
Sbjct: 317 LKQNTLLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 56/168 (33%)
Query: 111 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 170
           +N V C  ++   N IV+G  +  +R+W+ +TG  L  L  H  P+ +V +N+DG+ I+S
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 171 SSYDGLCRIWDTASGQCLKTL---------------------------IDDD-------- 195
              + +  +W+  SG  ++                             +DDD        
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 196 --------------------NPPVSFVKFSPNGKYILAATLDNTLKLW 223
                               + P+S ++F+   K +L+A+ D TL++W
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 30  VSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKL----GISDVAWSSDSRLL 84
           V  V+FSP+ GE++ +  +D+ I  +    G+F K I   +     GI  ++W    +  
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 85  VSGSDDKTLKIWELSSGKCL------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
             G+D  T+++W++++ KC+      K   G+         N +   I+S S D ++  +
Sbjct: 269 TVGAD-ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR---IISLSLDGTLNFY 324
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 184
           ++   + LKT+  H+  ++A+  N     ++S SYDG    W ++S
Sbjct: 325 ELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS 366

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 68  HKLG--ISDVAWSSDS-RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYV----FCCNFN 120
           HK G  + DV +S DS   +++   D+ +  ++  SG+ LK ++     V    F  ++ 
Sbjct: 203 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262
Query: 121 PQSNLIVSGSFDESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGS-LIVSSSYDGLC 177
                   G+ D ++R+WDV T KC++  TL         V     G+  I+S S DG  
Sbjct: 263 DSQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
             ++    + LKT I   N  ++ +  +P    +++ + D  +  W S
Sbjct: 322 NFYELGHDEVLKT-ISGHNKGITALTVNP----LISGSYDGRIMEWSS 364

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 19/162 (11%)
Query: 30  VSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKL----GISDVAWSSDSRLL 84
           V  V+FSP+ GE++ +  +D+ I  +    G+F K I   +     GI  ++W    +  
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 268
Query: 85  VSGSDDKTLKIWELSSGKCL------KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
             G+D  T+++W++++ KC+      K   G+         N +   I+S S D ++  +
Sbjct: 269 TVGAD-ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR---IISLSLDGTLNFY 324
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
           ++   + LKT+  H+  ++A+  N     ++S SYDG    W
Sbjct: 325 ELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 4/206 (1%)
Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
           +K  L     A  ++  SP+ +   S  +D  I +W  ++    +   GH  G S +  S
Sbjct: 133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
           +D   L +G  D T++ W+L  G+ L+     ++ +F   + P    +  G    +V + 
Sbjct: 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251
Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 198
            V      + L  H   V ++ F   G   VS+  D L   W T  G  +      ++  
Sbjct: 252 HVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKESSS 308
Query: 199 VSFVKFSPNGKYILAATLDNTLKLWD 224
           V     S + KYI+  + D    +++
Sbjct: 309 VLSCDISVDDKYIVTGSGDKKATVYE 334

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 8/120 (6%)
Query: 69  KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK----GHSNYVFCCNFNPQSN 124
           + G++DVAW S+  +LV+ SD   +++WE+   + L   K     H + V   +      
Sbjct: 94  EAGVTDVAWVSEKGILVA-SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT 152
Query: 125 LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF--NRDGSLIVSSSYDGLCRIWDT 182
             VSG  D SV++WD+     LK+  AHS  V+ V     +D ++ +S   DG   +WDT
Sbjct: 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDT 211

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 27/210 (12%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEK---TISGHKLGISDV 75
           K    GHT  V  V +    E L  S AD + + IW   +    K   T+  H   ++ +
Sbjct: 224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283
Query: 76  AWSSDSR-LLVSGSDDKTLKIWELSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGS-FD 132
           +++  S  +L +GS DKT+ +W+L + K  L + + H + +F   ++P +  I++ S  D
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 343
Query: 133 ESVRIWDV-RTGKCLKTLPA-------------HSDPVSAVHFNRDGSLIV-SSSYDGLC 177
             + +WD+ + G+   T  A             H+  +S   +N +   I+ S S D + 
Sbjct: 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403
Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPN 207
           ++W     Q  + + +D+ P +   +   N
Sbjct: 404 QVW-----QMAENVYNDEEPEIPASELETN 428

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 27/210 (12%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEK---TISGHKLGISDV 75
           K    GHT  V  V +    E L  S AD + + IW   +    K   T+  H   ++ +
Sbjct: 226 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 285
Query: 76  AWSSDSR-LLVSGSDDKTLKIWELSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGS-FD 132
           +++  S  +L +GS DKT+ +W+L + K  L + + H + +F   ++P +  I++ S  D
Sbjct: 286 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345
Query: 133 ESVRIWDV-RTGKCLKTLPA-------------HSDPVSAVHFNRDGSLIV-SSSYDGLC 177
             + +WD+ + G+   T  A             H+  +S   +N +   I+ S S D + 
Sbjct: 346 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 405
Query: 178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPN 207
           ++W     Q  + + +D+ P +   +   N
Sbjct: 406 QVW-----QMAENVYNDEEPEIPASELETN 430

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 71/230 (30%)
Query: 65  ISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSG-------KCLKTLKGHSNYVF- 115
           + GH+     ++W+S+ S  L+S SDD T+ +W++++G              GHS  V  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 116 ---------------------------------------------CCNFNPQSNLIV-SG 129
                                                        C +FNP S  I+ +G
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 130 SFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-GQ 186
           S D++V +WD+R  K  L T  +H D +  VH++  + +++ SS  D    +WD +  G+
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE 354
Query: 187 CLKTLIDDDNPP------------VSFVKFSPNGKYIL-AATLDNTLKLW 223
                  +D PP            +S   ++PN  +++ + + DN +++W
Sbjct: 355 EQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVR 136
           S+ SR++V+G +   + +  +  GK L  L+ H   V     NP  +  + + S D++V+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 137 IWDVRT--GKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 192
           IWD+R   GK   L +LP H  PV+A  F+ DG+ ++++      R++  +   C   LI
Sbjct: 277 IWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335
Query: 193 DDDNPPVSFVKFSP 206
              +P   F   +P
Sbjct: 336 --PHPHRHFQHLTP 347

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVR 136
           S+ SR++V+G +   + +  +  GK L  L+ H   V     NP  +  + + S D++V+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 137 IWDVRT--GKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 192
           IWD+R   GK   L +LP H  PV+A  F+ DG+ ++++      R++  +   C   LI
Sbjct: 277 IWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335
Query: 193 DDDNPPVSFVKFSP 206
              +P   F   +P
Sbjct: 336 --PHPHRHFQHLTP 347

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVR 136
           S+ SR++V+G +   + +  +  GK L  L+ H   V     NP  +  + + S D++V+
Sbjct: 219 SASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 277
Query: 137 IWDVRT--GKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 192
           IWD+R   GK   L +LP H  PV+A  F+ DG+ ++++      R++  +   C   LI
Sbjct: 278 IWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 336
Query: 193 DDDNPPVSFVKFSP 206
              +P   F   +P
Sbjct: 337 --PHPHRHFQHLTP 348

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 92/200 (46%), Gaps = 27/200 (13%)
Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAYDGKFEK---TISGHKLGISDV 75
           K    GHT  V  V +    E L  S AD + + IW   +    K   T+  H   ++ +
Sbjct: 228 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 287
Query: 76  AWSSDSR-LLVSGSDDKTLKIWELSSGKC-LKTLKGHSNYVFCCNFNPQSNLIVSGS-FD 132
           +++  S  +L +GS DKT+ +W+L + K  L + + H + +F   ++P +  I++ S  D
Sbjct: 288 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347
Query: 133 ESVRIWDV-RTGKCLKTLPA-------------HSDPVSAVHFNRDGSLIV-SSSYDGLC 177
             + +WD+ + G+   T  A             H+  +S   +N +   I+ S S D + 
Sbjct: 348 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 407
Query: 178 RIWDTASGQCLKTLIDDDNP 197
           ++W     Q  + + +D+ P
Sbjct: 408 QVW-----QMAENVYNDEEP 422

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 65  ISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSG-------KCLKTLKGHSNYVFC 116
           + GH+     ++W+S+ S  L+S SDD T+ +W++++G              GHS  V  
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 117 CNFN-PQSNLIVSGSFDESVRIWDVR---TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS- 171
             ++    +L  S + D+ + IWD R   T K    + AH+  V+ + FN     I+++ 
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWD 224
           S D    +WD  + +      +     +  V +SP+ + ILA++  D  L +WD
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 90/174 (51%), Gaps = 14/174 (8%)
Query: 65  ISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSS----GKCL--KTL-KGHSNYVFC 116
           + GH+     ++W+ + S  L+S SDD T+ +W++S+    GK +  KT+  GH+  V  
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 117 CNFN-PQSNLIVSGSFDESVRIWDVR---TGKCLKTLPAHSDPVSAVHFNRDGSLIVSS- 171
            +++    +L  S + D+ + IWD R   T K   ++ AH+  V+ + FN     I+++ 
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATG 292
Query: 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWD 224
           S D    +WD  + +      +     +  V++SP+ + ILA++  D  L +WD
Sbjct: 293 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 69  KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK----GHSNYVFCCNFNPQSN 124
           + G++D+ W  +  +LV+ SD   +++WEL   + L   K     H + V   +      
Sbjct: 82  EAGVADLTWVGERGILVA-SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT 140
Query: 125 LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDT 182
             VSGS D  +++WD+     L +  AH+  V+ V  +    S+ +S S D    +WDT
Sbjct: 141 QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 93/242 (38%), Gaps = 36/242 (14%)
Query: 18  VLKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGIS 73
           +L   L GH   V  V ++    G  LAS S D+ + IW   +G +EK+   +GH   ++
Sbjct: 48  ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN 107
Query: 74  DVAWSSDSR--LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 131
            V W+      +L  GS D  + +   +     +  K ++ +   CN    +  +V GS 
Sbjct: 108 SVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167
Query: 132 --------------------DESVRIWDVRTG---KCLKTLPAHSDPVSAVHF----NRD 164
                               D  +++W        K  + L AHSD V  V +       
Sbjct: 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLP 227
Query: 165 GSLIVSSSYDGLCRIW---DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 221
            S I S S DG   IW   D +S      L+   N  V  V +S     +  +  DN + 
Sbjct: 228 TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT 287
Query: 222 LW 223
           LW
Sbjct: 288 LW 289

>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein Ski8p Length = 407

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 24/136 (17%)
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCL------KTLKGHSNYVFCCNFNPQSNLIV----S 128
           S+  L+ +G ++ T++I ELS+ + L       ++  +SN +    F+PQ +L+     S
Sbjct: 205 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 264
Query: 129 GSFDESVRIWDVRTGKCLKTLP-------------AHSDPVSAVHFNRDGSLIVSSSYDG 175
            SF   + +++   G+ + +L              AHS  V ++ FN  G  + S+ +DG
Sbjct: 265 NSFG-CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 323
Query: 176 LCRIWDTASGQCLKTL 191
             R WD  + + + TL
Sbjct: 324 KLRFWDVKTKERITTL 339

>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna Degradation And Meiotic Recombination Length = 397

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 24/136 (17%)
Query: 79  SDSRLLVSGSDDKTLKIWELSSGKCL------KTLKGHSNYVFCCNFNPQSNLIV----S 128
           S+  L+ +G ++ T++I ELS+ + L       ++  +SN +    F+PQ +L+     S
Sbjct: 195 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254
Query: 129 GSFDESVRIWDVRTGKCLKTLP-------------AHSDPVSAVHFNRDGSLIVSSSYDG 175
            SF   + +++   G+ + +L              AHS  V ++ FN  G  + S+ +DG
Sbjct: 255 NSFG-CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313
Query: 176 LCRIWDTASGQCLKTL 191
             R WD  + + + TL
Sbjct: 314 KLRFWDVKTKERITTL 329

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 45  SSADKLIKIWGAYDGK--FEKTISGHKLGISDVAW-SSDSRLLVSGSDDKTLKIWELSSG 101
           S  D  I IW   +     +    GH+ GI  + W   D  LL+S   D T+ +W   S 
Sbjct: 236 SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295
Query: 102 KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRI 137
           + L       N+ F   F P++ +L    SFD  + +
Sbjct: 296 EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.77
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.76
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.76
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.75
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.74
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.72
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.71
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.71
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.68
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.68
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.67
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.64
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.61
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.6
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.58
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.57
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.56
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.56
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.52
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.51
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.49
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.48
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.48
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.47
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.47
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.47
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.45
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.44
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.43
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.41
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.41
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.38
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.38
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.36
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.35
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.34
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.32
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.31
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.31
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.24
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.21
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.19
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.14
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.13
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.13
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.13
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.1
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.08
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.06
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.06
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.02
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.02
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.99
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.97
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.97
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.95
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.93
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.9
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.87
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.86
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.8
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.76
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.76
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.74
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.73
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.72
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.72
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.71
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.69
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.67
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.66
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.65
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.65
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.65
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.64
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.62
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.59
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.59
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.59
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.59
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.57
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.56
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.56
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.53
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.5
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.49
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.48
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.4
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.39
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.39
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.37
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.37
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.37
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.36
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.36
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.36
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	98.34
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.31
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.28
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.28
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.26
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.22
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.16
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.13
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.07
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.06
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.91
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.88
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.88
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.87
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.85
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.83
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.74
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.67
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.62
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.61
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.6
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.57
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.56
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.52
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.51
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.51
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.5
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.41
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.4
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.28
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.25
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.23
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.2
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.19
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.17
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.14
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.94
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.92
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.92
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.86
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.77
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.72
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.68
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.67
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.63
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.47
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.12
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.03
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.01
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.01
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.94
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.92
3ott_A	758	Two-component system sensor histidine kinase; beta	95.69
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.46
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.32
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.46
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.36
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	91.9
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.07
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.78
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	89.61
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	89.39
3ott_A	758	Two-component system sensor histidine kinase; beta	88.98
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.4
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	88.3
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	87.83
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	85.98
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	81.46
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	80.97

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.5e-41  Score=257.88  Aligned_cols=217  Identities=94%  Similarity=1.471  Sum_probs=203.1

Q ss_pred             CCCCCccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC
Q psy4391          10 SSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD   89 (231)
Q Consensus        10 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~   89 (231)
                      +.+.++++.+++++.+|...|.+++|+|++++|++++.||.|++|+..+++....+.+|...|.+++|+|++++|++++.
T Consensus         6 ~~~~~~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~   85 (312)
T 4ery_A            6 PTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD   85 (312)
T ss_dssp             ---CCCCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcCCCCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC
Confidence            34456778899999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             CCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEE
Q psy4391          90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus        90 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  169 (231)
                      |+.|++||+++++.+..+..|...+.++.|+|+++++++++.|+.|++||+++++.+..+..|..++.+++|+|++++++
T Consensus        86 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
T 4ery_A           86 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV  165 (312)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +++.||.|++||+++++.+..+...+..++..++|+|++++|++++.||.|++||..
T Consensus       166 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  222 (312)
T 4ery_A          166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS  222 (312)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            999999999999999988877776777789999999999999999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.5e-40  Score=251.77  Aligned_cols=211  Identities=21%  Similarity=0.423  Sum_probs=192.0

Q ss_pred             ceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      ..++.++.+|.+.|.+++|+|++++|++++.||.|++||..++.....+..|...+.+++|+|++++|++++.|+.|++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            34566788999999999999999999999999999999999998888899899999999999999999999999999999


Q ss_pred             eCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc-eeeeccCCCCCeEEEEEcC-CCCeEEEEecC
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNR-DGSLIVSSSYD  174 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  174 (231)
                      |+.+++.+..+.+|...|.+++|+|++.++++++.|+.|++||++++. ....+..|...|.+++|+| ++.+|++|+.|
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence            999999999999999999999999999999999999999999998874 4566788999999999999 67899999999


Q ss_pred             CeEEEEeCCCCceeeeeecCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCCC
Q psy4391         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +.|++||+........+...+...+..+.|+|  ++++|++++.|+.|++||...
T Consensus       163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred             CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence            99999999888776666666667788888876  778999999999999999743

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.9e-39  Score=246.37  Aligned_cols=204  Identities=30%  Similarity=0.491  Sum_probs=190.7

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      ..+..|...+.+++|+|++++|++++.+|.+++|+..+++....+..+...+.+++|+|++++|++++.|+.|++||+.+
T Consensus       116 ~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~  195 (321)
T 3ow8_A          116 KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT  195 (321)
T ss_dssp             EEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            34556778899999999999999999999999999999988888888888899999999999999999999999999999


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEE
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~  180 (231)
                      ++.+..+.+|...+.+++|+|++++|++++.|+.|++||+++++....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus       196 ~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iw  275 (321)
T 3ow8_A          196 GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW  275 (321)
T ss_dssp             TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence            99999999999999999999999999999999999999999999989999999999999999999999999999999999


Q ss_pred             eCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       181 d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      |+.+++.+..+.. +...|..++|+|+|++|++++.||.|++||.
T Consensus       276 d~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          276 DVGTRTCVHTFFD-HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             ETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             eCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            9999988877654 4567999999999999999999999999994

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7e-39  Score=247.57  Aligned_cols=206  Identities=21%  Similarity=0.284  Sum_probs=180.1

Q ss_pred             eeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCC-EEEEecCCCcEEEE
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIW   96 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~   96 (231)
                      ..++.+.+|...|++++|+|+|++|++|+.||.|++||+.+++....+.+|...|.+++|+|++. .+++++.|+.|++|
T Consensus       118 ~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw  197 (344)
T 4gqb_B          118 VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW  197 (344)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccc
Confidence            34556678999999999999999999999999999999999999999999999999999999885 67899999999999


Q ss_pred             eCCCceeeeeec--CCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCC-CeEEEEe
Q psy4391          97 ELSSGKCLKTLK--GHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSS  172 (231)
Q Consensus        97 d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~  172 (231)
                      |+++++....+.  .+...+.+++|+|+ ++++++|+.|+.|++||+++++.+..+..|...|.+++|+|++ ++|++|+
T Consensus       198 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs  277 (344)
T 4gqb_B          198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS  277 (344)
T ss_dssp             ETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred             cccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe
Confidence            999988777664  34456889999985 5788999999999999999999999999999999999999998 5789999


Q ss_pred             cCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeC
Q psy4391         173 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDS  225 (231)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s~d~~v~vwd~  225 (231)
                      .|+.|++||+.+++... + ..+...|.+++|+|+++ +|++++.|++|++|+.
T Consensus       278 ~D~~i~vwd~~~~~~~~-~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v  329 (344)
T 4gqb_B          278 EDCSLAVLDSSLSELFR-S-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVV  329 (344)
T ss_dssp             TTSCEEEECTTCCEEEE-E-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             CCCeEEEEECCCCcEEE-E-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence            99999999999887654 2 35667899999999987 5678999999999995

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.1e-39  Score=245.85  Aligned_cols=207  Identities=30%  Similarity=0.510  Sum_probs=192.6

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ...++.+|...|.+++|++++..+++++.|+.|++||..+++....+..+...+..++|+|+++++++++.++.+++|++
T Consensus        72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred             eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence            44567899999999999999999999999999999999999988888888888999999999999999999999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      ++++....+..+...+.+++|+|++++|++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|++++.|+.|+
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~  231 (321)
T 3ow8_A          152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK  231 (321)
T ss_dssp             TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence            99988888888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +||+++++....+. .+...|..++|+|+|++|++++.|+.|++||..
T Consensus       232 iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          232 IYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             EEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            99999888776654 455679999999999999999999999999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.7e-39  Score=253.75  Aligned_cols=209  Identities=34%  Similarity=0.674  Sum_probs=194.3

Q ss_pred             eeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      ...+.+.+|...|++++|+|++++|++|+.||.|++||..++.....+.+|...|.+++|+|+++++++++.|+.|++||
T Consensus        99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C           99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence            34566789999999999999999999999999999999999988889999999999999999999999999999999999


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeE
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  177 (231)
                      +.+++.+..+.+|...|.+++|+|++.++++++.|+.|++||++++.++..+..|...+.++.++|++.++++++.|+.|
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v  258 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  258 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceeeeeecCCCCCeEEEEECCC--------------------CCEEEEEeCCCeEEEEeCCC
Q psy4391         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPN--------------------GKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~--------------------g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ++||+.+++....+. .+...+.+++|+|+                    |.+|++|+.|+.|++||...
T Consensus       259 ~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          259 RVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             EEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             EEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            999999988776654 45567999999996                    67899999999999999643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.2e-38  Score=250.45  Aligned_cols=206  Identities=37%  Similarity=0.636  Sum_probs=192.6

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      .++.+|...|.+++|+|++++|++|+.||.|++||..++.....+.+|...|.+++|+|+++++++++.|+.|++||+.+
T Consensus       144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~  223 (410)
T 1vyh_C          144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT  223 (410)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            46778999999999999999999999999999999998888888899999999999999999999999999999999999


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCC----------------
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD----------------  164 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~----------------  164 (231)
                      +..+..+.+|...+.++.++|++.++++++.|+.|++||+++++....+..|...|.+++|+|+                
T Consensus       224 ~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  303 (410)
T 1vyh_C          224 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK  303 (410)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred             CcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccc
Confidence            9999999999999999999999999999999999999999999998899999999999999996                


Q ss_pred             ----CCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         165 ----GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       165 ----~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                          +.++++|+.|+.|++||+.+++.+..+.. +...|..++|+|+|++|++++.||.|++||..+
T Consensus       304 ~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          304 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             ----CCEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             cCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence                66899999999999999999988777654 456799999999999999999999999999754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.3e-38  Score=241.07  Aligned_cols=209  Identities=25%  Similarity=0.488  Sum_probs=190.1

Q ss_pred             cceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEE
Q psy4391          16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (231)
Q Consensus        16 ~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~   95 (231)
                      ......++.+|...|.+++|+|++++|++|+.||.|++||..++.....+..|...+..++|+|+++++++++.|+.+++
T Consensus        44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence            34556778899999999999999999999999999999999999888888888889999999999999999999999999


Q ss_pred             EeCCCc----eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE
Q psy4391          96 WELSSG----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS  171 (231)
Q Consensus        96 ~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  171 (231)
                      |++.+.    .....+.+|...+.++.|++++. +++++.|+.|++||+++++.+..+..|.+.|.+++|+|+++++++|
T Consensus       124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            999865    34556778889999999988765 8899999999999999999999999999999999999999999999


Q ss_pred             ecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +.|+.|++||+++++....+. .+...|..++|+|+|++|++++.||.|++||..
T Consensus       203 ~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~  256 (340)
T 1got_B          203 ACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLR  256 (340)
T ss_dssp             ETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence            999999999999988776654 455679999999999999999999999999964

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-38  Score=244.12  Aligned_cols=210  Identities=28%  Similarity=0.533  Sum_probs=182.5

Q ss_pred             cceeEEeeccccc-ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEE--E-EecccccEEEEEECCCCCEEEEecCCC
Q psy4391          16 NYVLKFTLAGHTK-AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--T-ISGHKLGISDVAWSSDSRLLVSGSDDK   91 (231)
Q Consensus        16 ~~~~~~~~~~h~~-~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~--~-~~~~~~~v~~~~~~~~~~~l~~~~~~g   91 (231)
                      ...+..++.+|.. .|.+++|+|+|++|++|+.|+.|++|+..++....  . ..+|...|.+++|+|++++|++++.|+
T Consensus         4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A            4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence            3445667889987 89999999999999999999999999998765432  2 257888999999999999999999999


Q ss_pred             cEEEEeCCCc--eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc---eeeeccCCCCCeEEEEEcCCCC
Q psy4391          92 TLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK---CLKTLPAHSDPVSAVHFNRDGS  166 (231)
Q Consensus        92 ~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~  166 (231)
                      .+++|+...+  +.+..+.+|...|.+++|+|++++|++++.|+.|++||++.+.   .+..+..|...|.+++|+|+++
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            9999998765  4567788999999999999999999999999999999998764   3556778899999999999999


Q ss_pred             eEEEEecCCeEEEEeCCCCceee-eeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         167 LIVSSSYDGLCRIWDTASGQCLK-TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +|++++.|+.|++||..+++... .....+...|..++|+|+|++|++++.|+.|++||.
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            99999999999999998775332 223456678999999999999999999999999995

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.6e-37  Score=237.76  Aligned_cols=211  Identities=29%  Similarity=0.516  Sum_probs=187.8

Q ss_pred             ccceeEEeecccccceEEEEECCCC-CEEEEEeCCCcEEEeecCC-----CcEEEEEecccccEEEEEECCCCCEEEEec
Q psy4391          15 PNYVLKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYD-----GKFEKTISGHKLGISDVAWSSDSRLLVSGS   88 (231)
Q Consensus        15 ~~~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~dg~i~i~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   88 (231)
                      ....+..++.+|.+.|.+++|+|++ ++|++|+.|+.|++|+...     +.....+.+|...|.+++|+|+++++++++
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            3466777899999999999999965 7999999999999999753     223556788999999999999999999999


Q ss_pred             CCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCC----
Q psy4391          89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD----  164 (231)
Q Consensus        89 ~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~----  164 (231)
                      .|+.|++||+.+++....+.+|...|.+++|+|++.++++++.|+.|++||++ ++.+..+..|...+.++++.|.    
T Consensus        85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred             CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence            99999999999999999999999999999999999999999999999999997 4567778889999999999985    


Q ss_pred             --CCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         165 --GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       165 --~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                        +..+++++.|+.|++||+.+.+....+. .+...|..++|+|+|++|++++.||.|++||...
T Consensus       164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          164 DDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             --CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             CCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence              4489999999999999999887666554 4567899999999999999999999999999744

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.8e-37  Score=239.46  Aligned_cols=205  Identities=27%  Similarity=0.519  Sum_probs=185.7

Q ss_pred             eeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      .....+.+|...|.++.|++++. +++++.|+.|++||..++.....+.+|...|.+++|+|+++++++++.|+.|++||
T Consensus       134 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd  212 (340)
T 1got_B          134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            34456778999999999998776 78889999999999999998889999999999999999999999999999999999


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccC--CCCCeEEEEEcCCCCeEEEEecCC
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA--HSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                      +.++.....+..|...+.+++|+|+++++++++.|+.|++||+++++.+..+..  +...+.+++|+|+++++++|+.||
T Consensus       213 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~  292 (340)
T 1got_B          213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF  292 (340)
T ss_dssp             TTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC
Confidence            999998899999999999999999999999999999999999998887666542  234799999999999999999999


Q ss_pred             eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      .|++||+.+++.+..+. .+..+|.+++|+|+|++|++|+.|+.|+|||
T Consensus       293 ~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          293 NCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999888777665 4566899999999999999999999999997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.4e-37  Score=235.36  Aligned_cols=205  Identities=27%  Similarity=0.542  Sum_probs=181.7

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      .++.+|...|.+++|+|++++|++|+.|+.|++||..+++....+.+|...|.+++|+|+++++++++.|+.|++||++.
T Consensus        59 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~  138 (319)
T 3frx_A           59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG  138 (319)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred             eEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            45779999999999999999999999999999999999999999999999999999999999999999999999999974


Q ss_pred             ceeeeeecCCCcceEEEEECCC------CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQ------SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                       +.+..+.+|...+.++.+.|.      +..+++++.|+.|++||+++++....+..|...|.+++|+|++++|++++.|
T Consensus       139 -~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d  217 (319)
T 3frx_A          139 -QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD  217 (319)
T ss_dssp             -CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             -CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence             556777889999999999985      4589999999999999999998888889999999999999999999999999


Q ss_pred             CeEEEEeCCCCceeeeeecC-----------------------------------------------CCCCeEEEEECCC
Q psy4391         175 GLCRIWDTASGQCLKTLIDD-----------------------------------------------DNPPVSFVKFSPN  207 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~-----------------------------------------------~~~~i~~~~~s~~  207 (231)
                      |.|++||+.+++.+..+...                                               ....+.+++|+|+
T Consensus       218 g~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd  297 (319)
T 3frx_A          218 GEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD  297 (319)
T ss_dssp             CEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTT
T ss_pred             CeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCC
Confidence            99999999887654432110                                               1234667889999


Q ss_pred             CCEEEEEeCCCeEEEEeCC
Q psy4391         208 GKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       208 g~~l~~~s~d~~v~vwd~~  226 (231)
                      |++|++|+.||.|+|||..
T Consensus       298 g~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          298 GQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             SSEEEEEETTSCEEEEEEE
T ss_pred             CCEEEEeecCceEEEEEEe
Confidence            9999999999999999863

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.1e-37  Score=238.18  Aligned_cols=210  Identities=26%  Similarity=0.527  Sum_probs=184.1

Q ss_pred             eeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEE---------------------------------
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---------------------------------   64 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~---------------------------------   64 (231)
                      ....++.+|...|.+++|+|++++|++|+.||.|++||..+++....                                 
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            34567889999999999999999999999999999999766544332                                 


Q ss_pred             ---------------EecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECC--CCCEEE
Q psy4391          65 ---------------ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP--QSNLIV  127 (231)
Q Consensus        65 ---------------~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~  127 (231)
                                     +..|...+..++|+|++..|++++.|+.|++||+++++.+..+.+|...+.+++++|  ++++++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence                           223555688899999999999999999999999999999999999999999999987  578999


Q ss_pred             EeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecC-CCCCeEEEEECC
Q psy4391         128 SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSP  206 (231)
Q Consensus       128 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~  206 (231)
                      +|+.|+.|++||+++++.+..+..|...|.+++|+|++.+|++++.|+.|++||++..+.+..+... ....+..++|+|
T Consensus       215 sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~  294 (354)
T 2pbi_B          215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL  294 (354)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred             EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999988766554332 234678899999


Q ss_pred             CCCEEEEEeCCCeEEEEeCCC
Q psy4391         207 NGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       207 ~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +|++|++++.|+.|++||...
T Consensus       295 ~g~~l~~g~~d~~i~vwd~~~  315 (354)
T 2pbi_B          295 SGRLLFAGYNDYTINVWDVLK  315 (354)
T ss_dssp             TSSEEEEEETTSCEEEEETTT
T ss_pred             CCCEEEEEECCCcEEEEECCC
Confidence            999999999999999999743

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.9e-37  Score=234.84  Aligned_cols=207  Identities=28%  Similarity=0.490  Sum_probs=184.5

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      ...+..|...|.+++|+|++++|++|+.|+.|++||..+++....+.+|...|.+++|+|+++++++++.|+.|++||++
T Consensus        48 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~  127 (304)
T 2ynn_A           48 VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE  127 (304)
T ss_dssp             EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGG
T ss_pred             eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECC
Confidence            35567899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Cc-eeeeeecCCCcceEEEEECC-CCCEEEEeecCCcEEEEECCCCceeeecc-CCCCCeEEEEEcC--CCCeEEEEecC
Q psy4391         100 SG-KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFNR--DGSLIVSSSYD  174 (231)
Q Consensus       100 ~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d  174 (231)
                      ++ .....+.+|...+.+++|+| ++..+++|+.|+.|++||++.+.....+. .+...+..+.|+|  ++.+|++++.|
T Consensus       128 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D  207 (304)
T 2ynn_A          128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD  207 (304)
T ss_dssp             GTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT
T ss_pred             CCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC
Confidence            76 45567788999999999999 67899999999999999998776554443 4557889999986  77899999999


Q ss_pred             CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +.|++||+++++.+..+.. +...+..++|+|++++|++++.||.|++||...
T Consensus       208 ~~i~iWd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          208 LTIKIWDYQTKSCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             SEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             CeEEEEeCCCCccceeeCC-CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            9999999999988877654 456799999999999999999999999999743

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.2e-37  Score=238.14  Aligned_cols=203  Identities=24%  Similarity=0.471  Sum_probs=184.6

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECC--CCCEEEEecCCCcEEEEeC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~g~i~~~d~   98 (231)
                      ..+.+|...|.++.|+|+++.|++++.|+.|++||+.+++....+.+|...+.+++|+|  +++++++++.||.|++||+
T Consensus       148 ~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~  227 (354)
T 2pbi_B          148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM  227 (354)
T ss_dssp             EEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEET
T ss_pred             eeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence            44568999999999999999999999999999999999999999999999999999987  5689999999999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC--CCCeEEEEEcCCCCeEEEEecCCe
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH--SDPVSAVHFNRDGSLIVSSSYDGL  176 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~  176 (231)
                      ++++.+..+..|...+.+++|+|++.++++++.|+.|++||++.++.+..+..+  ...+.+++|+|++.++++++.|+.
T Consensus       228 ~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~  307 (354)
T 2pbi_B          228 RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT  307 (354)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc
Confidence            999999999999999999999999999999999999999999988776655433  347899999999999999999999


Q ss_pred             EEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         177 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       177 i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      |++||+.+++.+..+. .+...|..++|+|+|++|++++.||.|++|+
T Consensus       308 i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          308 INVWDVLKGSRVSILF-GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCceEEEEE-CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999888776654 4567899999999999999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.5e-37  Score=241.47  Aligned_cols=204  Identities=16%  Similarity=0.273  Sum_probs=182.5

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCC-EEEEecCCCcEEEEeC
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWEL   98 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~d~   98 (231)
                      .+...+|...|.+++|+|++++|++|+.||.|++||..+++....+.+|...|.+++|+|++. .+++++.|+.|++||+
T Consensus       132 ~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~  211 (357)
T 4g56_B          132 KFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT  211 (357)
T ss_dssp             CEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCT
T ss_pred             eeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEEC
Confidence            344568999999999999999999999999999999999999999999999999999999875 7889999999999999


Q ss_pred             CCceeeeeec--CCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCC-CeEEEEecC
Q psy4391          99 SSGKCLKTLK--GHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYD  174 (231)
Q Consensus        99 ~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  174 (231)
                      ++++....+.  .+...+.+++|+|+ +.++++|+.|+.|++||+++++.+..+..|...|.+++|+|++ ++|++++.|
T Consensus       212 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D  291 (357)
T 4g56_B          212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED  291 (357)
T ss_dssp             TSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT
T ss_pred             CCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC
Confidence            9887665543  45567899999997 4688999999999999999999999999999999999999987 578999999


Q ss_pred             CeEEEEeCCCCceeeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeC
Q psy4391         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~s~d~~v~vwd~  225 (231)
                      +.|++||+.+++.+..+  .+...|..++|+| ++++|++++.||.|++||.
T Consensus       292 ~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~  341 (357)
T 4g56_B          292 CTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL  341 (357)
T ss_dssp             SCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             CEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence            99999999998876654  4567899999998 7999999999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-36  Score=234.55  Aligned_cols=210  Identities=30%  Similarity=0.513  Sum_probs=181.4

Q ss_pred             CccceeEEeecccccceEEEEE-----CC-CCCEEEEEeCCCcEEEeecCCC-------cEEEEEecccccEEEEEECCC
Q psy4391          14 KPNYVLKFTLAGHTKAVSSVKF-----SP-NGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSD   80 (231)
Q Consensus        14 ~~~~~~~~~~~~h~~~i~~~~~-----~~-~~~~l~~~~~dg~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~   80 (231)
                      .++..+..++.+|.+.|++++|     ++ ++++|++|+.|+.|++|+..+.       .....+.+|...|.+++|+|+
T Consensus         8 ~~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~   87 (343)
T 2xzm_R            8 DIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE   87 (343)
T ss_dssp             EEEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred             ceEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence            3455566788999999999999     76 8999999999999999998643       345567889999999999999


Q ss_pred             CCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeee--ccCCCCCeEE
Q psy4391          81 SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT--LPAHSDPVSA  158 (231)
Q Consensus        81 ~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~v~~  158 (231)
                      +.++++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++.|+.|++||+........  ...|...+.+
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC  167 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence            99999999999999999999999999999999999999999999999999999999999984432222  2367889999


Q ss_pred             EEEcCCC----------CeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         159 VHFNRDG----------SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       159 ~~~~~~~----------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ++|+|++          .++++++.||.|++||. ..+....+ ..+...|..++|+|+|++|++++.||.|++||.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~-~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTF-KAHESNVNHLSISPNGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred             eeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEE-cCccccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            9999987          78999999999999994 34444443 345678999999999999999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.9e-37  Score=236.80  Aligned_cols=199  Identities=21%  Similarity=0.326  Sum_probs=171.5

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEE----EEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      |...|.+++|+|++ .|++|+.||.|++||+.+++...    ...+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus        81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~  159 (344)
T 4gqb_B           81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ  159 (344)
T ss_dssp             ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            45679999999985 57788999999999998776433    34578889999999999999999999999999999999


Q ss_pred             eeeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeeecc--CCCCCeEEEEEcCC-CCeEEEEecCCeE
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLP--AHSDPVSAVHFNRD-GSLIVSSSYDGLC  177 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~dg~i  177 (231)
                      +.+..+.+|...|.+++|+|++ .++++++.|+.|++||+++++....+.  .+...+.+++|+|+ ++++++|+.||.|
T Consensus       160 ~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v  239 (344)
T 4gqb_B          160 VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV  239 (344)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred             cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcE
Confidence            9999999999999999999988 478999999999999999998877664  34557899999985 5678899999999


Q ss_pred             EEEeCCCCceeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCC
Q psy4391         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSY  226 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~s~d~~v~vwd~~  226 (231)
                      ++||+++++.+..+.. +...|..++|+|+| ++|++++.|+.|+|||..
T Consensus       240 ~~wd~~~~~~~~~~~~-h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          240 SLVDTKSTSCVLSSAV-HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             EEEESCC--CCEEEEC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             EEEECCCCcEEEEEcC-CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence            9999999988877654 45679999999998 579999999999999964

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.2e-37  Score=240.27  Aligned_cols=211  Identities=28%  Similarity=0.548  Sum_probs=173.0

Q ss_pred             cceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEE
Q psy4391          16 NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (231)
Q Consensus        16 ~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~   95 (231)
                      +.....++.+|.+.|++++|+|++++|++|+.||.|++||..++.....+..|...|.+++|+|+++++++++.|+.+++
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            34456778999999999999999999999999999999999988888888777777777777777666555555555555


Q ss_pred             E--------------------------------------------------eCCCceeeeee-----cCCCcceEEEEEC
Q psy4391          96 W--------------------------------------------------ELSSGKCLKTL-----KGHSNYVFCCNFN  120 (231)
Q Consensus        96 ~--------------------------------------------------d~~~~~~~~~~-----~~~~~~v~~~~~~  120 (231)
                      |                                                  |+.+++.+..+     .+|...+.++.++
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            5                                                  44444444333     3466778888897


Q ss_pred             C-CCCEEEEeecCCcEEEEECC-CCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCC---
Q psy4391         121 P-QSNLIVSGSFDESVRIWDVR-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD---  195 (231)
Q Consensus       121 ~-~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---  195 (231)
                      + +++++++|+.|+.|++||++ .+..+..+..|.+.|.+++|+|++++|++++.||.|++||+++++.+..+....   
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence            6 78999999999999999998 456777888999999999999999999999999999999999998776654321   


Q ss_pred             ---CCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         196 ---NPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       196 ---~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                         ...+..++|+|+|++|++|+.||.|++||..
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence               2247889999999999999999999999963

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2e-36  Score=229.49  Aligned_cols=205  Identities=23%  Similarity=0.366  Sum_probs=176.2

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC--cEEEEEecccccEEEEEECCC--CCEEEEecCCCcEEEE
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSD--SRLLVSGSDDKTLKIW   96 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g~i~~~   96 (231)
                      ..+.+|...|.+++|+|+|++|++|+.|+.|++|+....  +....+.+|...|.+++|+|+  +++|++++.|+.|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            356789999999999999999999999999999998643  566788899999999999863  8899999999999999


Q ss_pred             eCCCce--eeeeecCCCcceEEEEECCC--CCEEEEeecCCcEEEEECCCCce--eeeccCCCCCeEEEEEcCC------
Q psy4391          97 ELSSGK--CLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKC--LKTLPAHSDPVSAVHFNRD------  164 (231)
Q Consensus        97 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~------  164 (231)
                      |+++++  ....+..|...+.+++|+|+  +.+|++++.|+.|++||++.+..  ...+..|...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998764  45566778889999999997  89999999999999999987632  3456788899999999997      


Q ss_pred             -------CCeEEEEecCCeEEEEeCCCCc----eeeeeecCCCCCeEEEEECCCC---CEEEEEeCCCeEEEEeCC
Q psy4391         165 -------GSLIVSSSYDGLCRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNG---KYILAATLDNTLKLWDSY  226 (231)
Q Consensus       165 -------~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~~i~~~~~s~~g---~~l~~~s~d~~v~vwd~~  226 (231)
                             +++|++|+.|+.|++||+++++    .... ...+...|..++|+|++   ++|++++.|+.|++||..
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~-l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~  237 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD  237 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEE-ECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE-ecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence                   5799999999999999998765    2233 33566789999999995   899999999999999964

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-36  Score=230.22  Aligned_cols=201  Identities=30%  Similarity=0.520  Sum_probs=169.3

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCC-------CcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-------GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      +|...|.+++|+|++++|++|+.|+.|++|+...       ......+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            3999999999999999999999999999999843       344566788999999999999999999999999999999


Q ss_pred             CCC----ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCC--ceeeeccCCCCCeEEEEEcCC--CCeEE
Q psy4391          98 LSS----GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG--KCLKTLPAHSDPVSAVHFNRD--GSLIV  169 (231)
Q Consensus        98 ~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~  169 (231)
                      +..    .+.+..+..|...+.+++|+|++.+|++++.|+.|++||.+.+  +++..+..|.+.|.+++|+|+  +.+|+
T Consensus       136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  215 (330)
T 2hes_X          136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC  215 (330)
T ss_dssp             CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred             ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence            943    2456778889999999999999999999999999999999876  567788899999999999998  67899


Q ss_pred             EEecCCeEEEEeCCCC--------ceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         170 SSSYDGLCRIWDTASG--------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~--------~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +++.|+.|++||+..+        .....+...+...|..++|++++ +|++++.||.|++||..
T Consensus       216 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          216 SGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV  279 (330)
T ss_dssp             EEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred             EEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence            9999999999998654        22333333366789999999765 79999999999999963

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-35  Score=228.29  Aligned_cols=205  Identities=28%  Similarity=0.452  Sum_probs=171.5

Q ss_pred             eeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC--cEEEEE-ec-ccccEEEEEECCCCCEEEEecCCCcE
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTI-SG-HKLGISDVAWSSDSRLLVSGSDDKTL   93 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~~g~i   93 (231)
                      .+..++.+|.+.|.+++|+++  +|++|+.|+.|++|+...+  .....+ .+ |...|.+++|+|++++|++++.|+.|
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v   82 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV   82 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence            345677899999999999987  9999999999999999764  334445 34 88899999999999999999999999


Q ss_pred             EEEeCCC-------ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCC----ceeeeccCCCCCeEEEEEc
Q psy4391          94 KIWELSS-------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG----KCLKTLPAHSDPVSAVHFN  162 (231)
Q Consensus        94 ~~~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~  162 (231)
                      ++||+..       .+....+.+|...|.+++|+|++++|++++.|+.|++||++..    +.+..+..|...|.+++|+
T Consensus        83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~  162 (330)
T 2hes_X           83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH  162 (330)
T ss_dssp             EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred             EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence            9999853       3456677889999999999999999999999999999999532    4566778899999999999


Q ss_pred             CCCCeEEEEecCCeEEEEeCCCC--ceeeeeecCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEeC
Q psy4391         163 RDGSLIVSSSYDGLCRIWDTASG--QCLKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDS  225 (231)
Q Consensus       163 ~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~s~d~~v~vwd~  225 (231)
                      |++.+|++++.|+.|++||..++  +.+..+ ..+...|..++|+|+  +.+|++++.|+.|++||.
T Consensus       163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~  228 (330)
T 2hes_X          163 PSEALLASSSYDDTVRIWKDYDDDWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY  228 (330)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCeeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence            99999999999999999998765  344443 345678999999999  778999999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.5e-36  Score=230.86  Aligned_cols=203  Identities=27%  Similarity=0.512  Sum_probs=176.7

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc--EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      .+|...|.+++|+|++++|++|+.|+.+++|+...+.  ....+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            5899999999999999999999999999999987664  45677889999999999999999999999999999999865


Q ss_pred             ---eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc--eeeeccCCCCCeEEEEEcCCCCeEEEEecCCe
Q psy4391         102 ---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (231)
Q Consensus       102 ---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  176 (231)
                         +.+..+..|...+.+++|+|++.+|++++.|+.|++||++.++  ....+..|...|.+++|+|++++|++++.|+.
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT  217 (345)
T ss_dssp             SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence               3456677888999999999999999999999999999998775  34677889999999999999999999999999


Q ss_pred             EEEEeCCCC---------------ceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         177 CRIWDTASG---------------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       177 i~v~d~~~~---------------~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      |++||....               +++..+...+...|..++|+|++..|++++.|+.|++|+..
T Consensus       218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~  282 (345)
T 3fm0_A          218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQED  282 (345)
T ss_dssp             EEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEEC
T ss_pred             EEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeC
Confidence            999986322               12223333356679999999999999999999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.9e-36  Score=249.34  Aligned_cols=205  Identities=25%  Similarity=0.425  Sum_probs=181.4

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC--cEEEEEecccccEEEEEECCCCCEEEEecCC----CcE
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSRLLVSGSDD----KTL   93 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----g~i   93 (231)
                      ...+.+|...|++++|+|+|++||+|+.||.|++||..++  .....+.+|...|.+++|+|+++.|++++.+    +.|
T Consensus        52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v  131 (611)
T 1nr0_A           52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  131 (611)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence            3456799999999999999999999999999999998643  3455677888999999999999999988765    367


Q ss_pred             EEEeCCCceeeeeecCCCcceEEEEECCCCC-EEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe
Q psy4391          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      ++||  .++....+.+|...|.+++|+|++. .+++++.|+.|++||.+.++....+..|...|.+++|+|++++|++++
T Consensus       132 ~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s  209 (611)
T 1nr0_A          132 FLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG  209 (611)
T ss_dssp             EETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEE
Confidence            7777  4556677889999999999999987 599999999999999999888888999999999999999999999999


Q ss_pred             cCCeEEEEeCCCCceeeeeec------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         173 YDGLCRIWDTASGQCLKTLID------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~------~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      .|+.|++||+.+++....+..      .+...|..++|+|+|++|++++.|+.|++||..
T Consensus       210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~  269 (611)
T 1nr0_A          210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  269 (611)
T ss_dssp             TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999887766633      466789999999999999999999999999964

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-35  Score=231.76  Aligned_cols=200  Identities=34%  Similarity=0.660  Sum_probs=177.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEeccc------------------ccEEEEEECCCCCEEEE
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK------------------LGISDVAWSSDSRLLVS   86 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~l~~   86 (231)
                      +|...|.+++|+|+|++|++|+ ++.+++|+..++.....+..+.                  ..|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999876 7899999999888777665432                  13889999999999999


Q ss_pred             ecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcC-CC
Q psy4391          87 GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DG  165 (231)
Q Consensus        87 ~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~  165 (231)
                      ++.|+.|++||+.+++....+.+|...|.+++|+|++..|++++.|+.|++||+++++....+. +...+.+++|+| ++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~  219 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG  219 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence            9999999999999999999999999999999999999999999999999999999998776665 456799999999 89


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeeee------cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         166 SLIVSSSYDGLCRIWDTASGQCLKTLI------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~------~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +++++++.|+.|++||+++++.+..+.      ..+...|.+++|+|+|++|++++.|+.|++||..
T Consensus       220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~  286 (393)
T 1erj_A          220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  286 (393)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            999999999999999999988766552      2355679999999999999999999999999963

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.1e-35  Score=228.40  Aligned_cols=206  Identities=25%  Similarity=0.397  Sum_probs=177.0

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC----cEEEEEecccccEEEEEECC--CCCEEEEecCCCcE
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTL   93 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~g~i   93 (231)
                      +..+.+|.+.|++++|+|++++|++|+.||.|++|+..++    +....+.+|...|.+++|+|  ++++|++++.||.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            3445799999999999999999999999999999999765    35566778899999999999  69999999999999


Q ss_pred             EEEeCCCc---------eeeeeecCCCcceEEEEECCC--CCEEEEeecCCcEEEEECCCCce-----------------
Q psy4391          94 KIWELSSG---------KCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKC-----------------  145 (231)
Q Consensus        94 ~~~d~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~-----------------  145 (231)
                      ++||+.++         +....+..|...+.+++|+|+  +.++++++.|+.|++||+++++.                 
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99999876         556777888999999999999  99999999999999999876542                 


Q ss_pred             -------------------------------------------eeeccCCCCCeEEEEEcCCC----CeEEEEecCCeEE
Q psy4391         146 -------------------------------------------LKTLPAHSDPVSAVHFNRDG----SLIVSSSYDGLCR  178 (231)
Q Consensus       146 -------------------------------------------~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~  178 (231)
                                                                 +..+..|...|.+++|+|++    ++|++++.||.|+
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~  243 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR  243 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence                                                       23345678899999999998    8999999999999


Q ss_pred             EEeCCCC----------------------------------------------ceeeeeecCCCCCeEEEEECCCCCEEE
Q psy4391         179 IWDTASG----------------------------------------------QCLKTLIDDDNPPVSFVKFSPNGKYIL  212 (231)
Q Consensus       179 v~d~~~~----------------------------------------------~~~~~~~~~~~~~i~~~~~s~~g~~l~  212 (231)
                      +||+..+                                              +.+.. ...+...|..++|+|+|++|+
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~  322 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE-HDDHNGEVWSVSWNLTGTILS  322 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEE-ECTTSSCEEEEEECSSSCCEE
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE-EecccccEEEEEEcCCCCEEE
Confidence            9998764                                              22222 234556799999999999999


Q ss_pred             EEeCCCeEEEEeCC
Q psy4391         213 AATLDNTLKLWDSY  226 (231)
Q Consensus       213 ~~s~d~~v~vwd~~  226 (231)
                      +++.||.|++||..
T Consensus       323 s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          323 SAGDDGKVRLWKAT  336 (351)
T ss_dssp             EEETTSCEEEEEEC
T ss_pred             EecCCCcEEEEecC
Confidence            99999999999964

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1e-35  Score=225.62  Aligned_cols=207  Identities=27%  Similarity=0.391  Sum_probs=174.9

Q ss_pred             EEeecccccceEEEEECCC--CCEEEEEeCCCcEEEeecCCCc--EEEEEecccccEEEEEECCC--CCEEEEecCCCcE
Q psy4391          20 KFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD--SRLLVSGSDDKTL   93 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g~i   93 (231)
                      ..++.+|.+.|.+++|+++  +++|++|+.|+.|++||..++.  ....+..|...|.+++|+|+  +.+|++++.|+.|
T Consensus        46 ~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v  125 (297)
T 2pm7_B           46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV  125 (297)
T ss_dssp             CEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEE
T ss_pred             EEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcE
Confidence            3567799999999999874  8999999999999999998764  44556778889999999997  8899999999999


Q ss_pred             EEEeCCCce--eeeeecCCCcceEEEEECCC-------------CCEEEEeecCCcEEEEECCCCc----eeeeccCCCC
Q psy4391          94 KIWELSSGK--CLKTLKGHSNYVFCCNFNPQ-------------SNLIVSGSFDESVRIWDVRTGK----CLKTLPAHSD  154 (231)
Q Consensus        94 ~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~  154 (231)
                      ++||+.++.  ....+..|...+.+++|+|+             +++|++++.|+.|++||+++++    ....+..|..
T Consensus       126 ~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~  205 (297)
T 2pm7_B          126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD  205 (297)
T ss_dssp             EEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             EEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC
Confidence            999998753  23456788889999999997             5799999999999999998765    4567788999


Q ss_pred             CeEEEEEcCCC---CeEEEEecCCeEEEEeCCCCce--eeeee--cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         155 PVSAVHFNRDG---SLIVSSSYDGLCRIWDTASGQC--LKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       155 ~v~~~~~~~~~---~~l~~~~~dg~i~v~d~~~~~~--~~~~~--~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      .|.+++|+|++   .+|++++.|+.|++||+.+...  .....  ..+...+..++|+|+|++|++++.|+.|++|+..
T Consensus       206 ~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          206 WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            99999999985   7999999999999999876431  11222  2345678999999999999999999999999853

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.8e-35  Score=241.49  Aligned_cols=201  Identities=42%  Similarity=0.717  Sum_probs=181.9

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      +..++.+|...|.+++|+|++++|++++.|+.|++|+. +++....+.+|...+.+++|+|+++++++++.|+.|++||.
T Consensus       377 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~  455 (577)
T 2ymu_A          377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR  455 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            34456789999999999999999999999999999996 56777888889999999999999999999999999999997


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      . ++.+..+..|...+.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|++++|++++.||.|+
T Consensus       456 ~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~  533 (577)
T 2ymu_A          456 N-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK  533 (577)
T ss_dssp             T-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred             C-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEE
Confidence            4 5667788889999999999999999999999999999995 5778888999999999999999999999999999999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      +||. +++.+..+. .+...|..++|+|||++|++++.|+.|++||
T Consensus       534 lwd~-~~~~~~~~~-~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          534 LWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EECT-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEeC-CCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            9996 566666654 4567899999999999999999999999998

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.2e-36  Score=235.14  Aligned_cols=208  Identities=26%  Similarity=0.501  Sum_probs=181.7

Q ss_pred             EEeecccccceEEEEECCCC-CEEEEEeCCCcEEEeecCCCcEEEEE-----ecccccEEEEEECC-CCCEEEEecCCCc
Q psy4391          20 KFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTI-----SGHKLGISDVAWSS-DSRLLVSGSDDKT   92 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~~g~   92 (231)
                      ...+.+|.+.|.++.|+|++ ..|++|+.|+.|++||+.++.....+     .+|...+.+++|++ +++++++++.|+.
T Consensus       150 ~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~  229 (380)
T 3iz6_a          150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT  229 (380)
T ss_dssp             CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSC
T ss_pred             eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCe
Confidence            34567999999999999975 57999999999999999998887776     56778899999987 7889999999999


Q ss_pred             EEEEeCC-CceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC-------CCeEEEEEcCC
Q psy4391          93 LKIWELS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-------DPVSAVHFNRD  164 (231)
Q Consensus        93 i~~~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------~~v~~~~~~~~  164 (231)
                      |++||++ ..+.+..+.+|...|.+++|+|++.++++++.|+.|++||+++++.+..+..+.       ..+.+++|+|+
T Consensus       230 v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  309 (380)
T 3iz6_a          230 VRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS  309 (380)
T ss_dssp             EEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS
T ss_pred             EEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC
Confidence            9999997 456777888999999999999999999999999999999999998776654432       24889999999


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeeee---cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ++++++|+.||.|++||+..++....+.   ..+...|.+++|+|+|++|++|+.|+.|++|+...
T Consensus       310 g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          310 GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            9999999999999999999888766552   34667899999999999999999999999999743

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.5e-35  Score=230.85  Aligned_cols=199  Identities=16%  Similarity=0.225  Sum_probs=168.1

Q ss_pred             cccceEEEEECCCCCEEEEE--eCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          26 HTKAVSSVKFSPNGEWLASS--SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~--~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      +...+.+++|+|||+++++|  +.|+.|++||..+++....+. |...|.+++|+|+|+++++++.+ .+.+|+..+++.
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~  209 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC  209 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcc
Confidence            34458899999999987654  478999999999988877775 56679999999999999998865 556666666554


Q ss_pred             ee--eecCCCcceEEEEECCCCCEEEEeecCC----cEEEEECCCCce----eeeccCCCCCeEEEEEcCCCCeEEEEec
Q psy4391         104 LK--TLKGHSNYVFCCNFNPQSNLIVSGSFDE----SVRIWDVRTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus       104 ~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                      ..  ....|...+.+++|+|+++.+++++.++    .+++||+.....    ...+..|..+|++++|+|+|++||+|+.
T Consensus       210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred             eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence            43  3345778899999999999999998887    578899876653    3456678889999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      |+.|++||+.+++.+..+...+..+|++++|+|||++||+++.|++|+|||..
T Consensus       290 D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          290 DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            99999999999998888777778899999999999999999999999999963

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.4e-34  Score=220.47  Aligned_cols=208  Identities=38%  Similarity=0.669  Sum_probs=183.9

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      ...+.+|...|.+++|+|++++|++++.||.|++||..+++....+.+|...+.+++|+|+++++++++.|+.|++||++
T Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  137 (312)
T 4ery_A           58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK  137 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            34567899999999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             CceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc-CCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      +++....+..|...+.++.|+|+++++++++.|+.|++||+++++.+..+. .+..++..++|+|+++++++++.||.|+
T Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  217 (312)
T 4ery_A          138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK  217 (312)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence            999888998899999999999999999999999999999999988776654 4556899999999999999999999999


Q ss_pred             EEeCCCCceeeeeecCCCC--CeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         179 IWDTASGQCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +||+.+++.+..+..+...  .+......+++++|++++.||.|++||...
T Consensus       218 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~  268 (312)
T 4ery_A          218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT  268 (312)
T ss_dssp             EEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred             EEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence            9999999877766543322  222333457889999999999999999743

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.1e-34  Score=222.50  Aligned_cols=203  Identities=23%  Similarity=0.444  Sum_probs=173.5

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      ...+.+|...|.+++|+|++.++++|+.|+.|++||..+++....+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus        69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~  148 (343)
T 2xzm_R           69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL  148 (343)
T ss_dssp             EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred             cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence            45678999999999999999999999999999999999999988999999999999999999999999999999999998


Q ss_pred             Cceeeeee--cCCCcceEEEEECCCC----------CEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCe
Q psy4391         100 SGKCLKTL--KGHSNYVFCCNFNPQS----------NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSL  167 (231)
Q Consensus       100 ~~~~~~~~--~~~~~~v~~~~~~~~~----------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  167 (231)
                      ........  ..|...+.++.|+|++          .++++++.|+.|++||. ..+....+..|...|.+++|+|++++
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~  227 (343)
T 2xzm_R          149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKY  227 (343)
T ss_dssp             SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred             CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCE
Confidence            54332221  2577889999999987          78999999999999994 45666778889999999999999999


Q ss_pred             EEEEecCCeEEEEeCCCCc-eeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         168 IVSSSYDGLCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      |++++.||.|++||+.... ....+.  ....+..++|+|++++++++ .|+.|++||..
T Consensus       228 l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~  284 (343)
T 2xzm_R          228 IATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLM  284 (343)
T ss_dssp             EEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEE-ESSCEEEEESS
T ss_pred             EEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeC
Confidence            9999999999999995433 333322  23468999999999988755 58899999964

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.3e-35  Score=243.04  Aligned_cols=207  Identities=23%  Similarity=0.396  Sum_probs=182.0

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCC----CcEEEeecCCCcEEEEEecccccEEEEEECCCCC-EEEEecCCCcE
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSAD----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTL   93 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~d----g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i   93 (231)
                      +..++.+|.+.|.+++|+|+|++|++++.+    +.|++|+.  +.....+.+|...|.+++|+|++. .|++++.|+.|
T Consensus        95 ~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v  172 (611)
T 1nr0_A           95 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV  172 (611)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred             eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeE
Confidence            445677899999999999999999988765    47888874  445566788999999999999987 59999999999


Q ss_pred             EEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc-------CCCCCeEEEEEcCCCC
Q psy4391          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-------AHSDPVSAVHFNRDGS  166 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~  166 (231)
                      ++||..+++....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.       .|.+.|.+++|+|+++
T Consensus       173 ~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~  252 (611)
T 1nr0_A          173 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT  252 (611)
T ss_dssp             EEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred             EEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC
Confidence            999999998888999999999999999999999999999999999999998877763       6899999999999999


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeeee------------------------------------------cCCCCCeEEEEE
Q psy4391         167 LIVSSSYDGLCRIWDTASGQCLKTLI------------------------------------------DDDNPPVSFVKF  204 (231)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~~------------------------------------------~~~~~~i~~~~~  204 (231)
                      +|++++.|+.|++||+.+++.+..+.                                          ..+...|..++|
T Consensus       253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~  332 (611)
T 1nr0_A          253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSS  332 (611)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEE
Confidence            99999999999999999876554331                                          235567899999


Q ss_pred             CCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         205 SPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       205 s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +|+|++|++++.|+.|++||...
T Consensus       333 spdg~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          333 SADGKTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTT
T ss_pred             eCCCCEEEEEeCCCcEEEEECCC
Confidence            99999999999999999999643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-34  Score=228.13  Aligned_cols=210  Identities=28%  Similarity=0.508  Sum_probs=179.4

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECC-CCCEEEEecCCCcEEEEe
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~d   97 (231)
                      ....+.+|...|.+++|+|++++|++++.|+.|++||..+++....+. +...+..++|+| +++++++++.|+.|++||
T Consensus       157 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd  235 (393)
T 1erj_A          157 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD  235 (393)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEE
T ss_pred             EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence            335577899999999999999999999999999999999887766665 345789999999 899999999999999999


Q ss_pred             CCCceeeeee-------cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCC------------ceeeeccCCCCCeEE
Q psy4391          98 LSSGKCLKTL-------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG------------KCLKTLPAHSDPVSA  158 (231)
Q Consensus        98 ~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~------------~~~~~~~~~~~~v~~  158 (231)
                      +.+++.+..+       .+|...+.+++|+|++++|++++.|+.|++||++..            .+...+..|...|.+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  315 (393)
T 1erj_A          236 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS  315 (393)
T ss_dssp             TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEE
T ss_pred             CCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEE
Confidence            9988776665       467888999999999999999999999999999763            234456678899999


Q ss_pred             EEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECC------CCCEEEEEeCCCeEEEEeCCCCCC
Q psy4391         159 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP------NGKYILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       159 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~------~g~~l~~~s~d~~v~vwd~~~~~~  230 (231)
                      ++|+|++.+|++++.|+.|++||+.+++.+..+. .+...|..++|++      ++++|++|+.||.|++|+.....|
T Consensus       316 ~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~p  392 (393)
T 1erj_A          316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAP  392 (393)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC--
T ss_pred             EEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccCC
Confidence            9999999999999999999999999998777665 4556788999876      688999999999999999754433

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-34  Score=223.74  Aligned_cols=214  Identities=22%  Similarity=0.410  Sum_probs=187.6

Q ss_pred             CCCccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCC
Q psy4391          12 NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK   91 (231)
Q Consensus        12 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g   91 (231)
                      +..........+.+|.+.|++++|+|++++|++++.||.|++|+..+++....+.+|...|.+++|+|++++|++++.||
T Consensus        17 ~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg   96 (369)
T 3zwl_B           17 YFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADY   96 (369)
T ss_dssp             CSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             EEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCC
Confidence            34444556678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecC-----CcEEEEECCCCce-----------eeeccCCCC-
Q psy4391          92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGKC-----------LKTLPAHSD-  154 (231)
Q Consensus        92 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~-----------~~~~~~~~~-  154 (231)
                      .|++||+.+++....+. +...+.++.|+|+++.+++++.+     +.|++||++.+..           ...+..+.+ 
T Consensus        97 ~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B           97 SIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             EEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             eEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            99999999998888877 67889999999999999999998     9999999976542           233344444 


Q ss_pred             -CeEEEEEcCCCCeEEEEecCCeEEEEeCCC-CceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         155 -PVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       155 -~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                       .+.+++|+|+++++++++.||.|++||+.+ .+.+..+ ..+...+..++|+|++++|++++.|+.|++||...
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI-DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE-ecCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence             899999999999999999999999999998 5555444 44566899999999999999999999999999743

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.8e-36  Score=228.84  Aligned_cols=207  Identities=21%  Similarity=0.327  Sum_probs=170.5

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc--EEEEEecccccEEEEEECC--CCCEEEEecCCCcEEE
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKI   95 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~g~i~~   95 (231)
                      ...+.+|.+.|.+++|+|+|++|++|+.|+.|++||..++.  ....+.+|...|.+++|+|  ++++|++++.|+.|++
T Consensus         6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            34567899999999999999999999999999999997764  3566789999999999986  4889999999999999


Q ss_pred             EeCCCce--eeeeecCCCcceEEEEECCC--CCEEEEeecCCcEEEEECCCCce---eeeccCCCCCeEEEEEcCC----
Q psy4391          96 WELSSGK--CLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKC---LKTLPAHSDPVSAVHFNRD----  164 (231)
Q Consensus        96 ~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~----  164 (231)
                      ||+++++  ....+.+|...|.+++|+|+  +.+|++++.|+.|++||++.+..   ...+..|...+.+++|+|+    
T Consensus        86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  165 (316)
T 3bg1_A           86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG  165 (316)
T ss_dssp             ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred             EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence            9998763  55667788899999999998  78999999999999999987632   3455678889999999997    


Q ss_pred             -------------CCeEEEEecCCeEEEEeCCCCc---eeeeeecCCCCCeEEEEECCCC----CEEEEEeCCCeEEEEe
Q psy4391         165 -------------GSLIVSSSYDGLCRIWDTASGQ---CLKTLIDDDNPPVSFVKFSPNG----KYILAATLDNTLKLWD  224 (231)
Q Consensus       165 -------------~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~~i~~~~~s~~g----~~l~~~s~d~~v~vwd  224 (231)
                                   +++|++++.|+.|++||+....   .+..+ ..+...|..++|+|++    ++|++++.|+.|++||
T Consensus       166 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~  244 (316)
T 3bg1_A          166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT  244 (316)
T ss_dssp             -----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred             cccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence                         4789999999999999997542   33333 3456789999999987    8999999999999998


Q ss_pred             CCC
Q psy4391         225 SYP  227 (231)
Q Consensus       225 ~~~  227 (231)
                      ...
T Consensus       245 ~~~  247 (316)
T 3bg1_A          245 CDD  247 (316)
T ss_dssp             CSS
T ss_pred             ccC
Confidence            643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.1e-35  Score=227.29  Aligned_cols=208  Identities=26%  Similarity=0.390  Sum_probs=174.4

Q ss_pred             eEEeecccccceEEEEECC--CCCEEEEEeCCCcEEEeecCCCc--EEEEEecccccEEEEEECCC--CCEEEEecCCCc
Q psy4391          19 LKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD--SRLLVSGSDDKT   92 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g~   92 (231)
                      ...++.+|...|.+++|++  ++++|++|+.|+.|++||..++.  ....+.+|...|.+++|+|+  +.+|++++.|+.
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~  128 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA  128 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence            3456789999999999986  48999999999999999998763  45567788889999999997  789999999999


Q ss_pred             EEEEeCCCce---eeeeecCCCcceEEEEECCC-----------------CCEEEEeecCCcEEEEECCCC---ceeeec
Q psy4391          93 LKIWELSSGK---CLKTLKGHSNYVFCCNFNPQ-----------------SNLIVSGSFDESVRIWDVRTG---KCLKTL  149 (231)
Q Consensus        93 i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~d~~i~v~d~~~~---~~~~~~  149 (231)
                      |++||+..+.   ....+..|...+.++.|+|+                 +.+|++++.|+.|++||++.+   +.+..+
T Consensus       129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l  208 (316)
T 3bg1_A          129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL  208 (316)
T ss_dssp             EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred             EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence            9999998753   23455677788888999987                 468999999999999999755   356678


Q ss_pred             cCCCCCeEEEEEcCCC----CeEEEEecCCeEEEEeCCCC---ceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q psy4391         150 PAHSDPVSAVHFNRDG----SLIVSSSYDGLCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (231)
Q Consensus       150 ~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~v  222 (231)
                      ..|...|.+++|+|++    .+|++++.|+.|++||+.+.   +........+...+..++|+|+|++|++++.|+.|++
T Consensus       209 ~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~l  288 (316)
T 3bg1_A          209 EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL  288 (316)
T ss_dssp             BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEE
T ss_pred             ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEE
Confidence            8899999999999986    78999999999999998762   1112222334668999999999999999999999999


Q ss_pred             EeCC
Q psy4391         223 WDSY  226 (231)
Q Consensus       223 wd~~  226 (231)
                      |+..
T Consensus       289 w~~~  292 (316)
T 3bg1_A          289 WKES  292 (316)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9953

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-34  Score=225.47  Aligned_cols=208  Identities=23%  Similarity=0.361  Sum_probs=180.6

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecC--CCcEEEEEecccccEEEEEECCC--CCEEEEecCCCcEEE
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDVAWSSD--SRLLVSGSDDKTLKI   95 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g~i~~   95 (231)
                      ...+.+|...|++++|+|++++|++|+.||.|++|+..  +......+.+|...|.+++|+++  +++|++++.||.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            35667999999999999999999999999999999997  44566677889999999999977  899999999999999


Q ss_pred             EeCCCce--eeeeecCCCcceEEEEECCC--CCEEEEeecCCcEEEEECCCCce--eeeccCCCCCeEEEEEcC------
Q psy4391          96 WELSSGK--CLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGKC--LKTLPAHSDPVSAVHFNR------  163 (231)
Q Consensus        96 ~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~------  163 (231)
                      ||+.+++  ....+..|...+.+++|+|+  +.++++++.|+.|++||++.+..  ...+..|...+.+++|+|      
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            9999886  66777788899999999999  99999999999999999988743  345567889999999999      


Q ss_pred             -------CCCeEEEEecCCeEEEEeCCCCceee---eeecCCCCCeEEEEECCC---CCEEEEEeCCCeEEEEeCCC
Q psy4391         164 -------DGSLIVSSSYDGLCRIWDTASGQCLK---TLIDDDNPPVSFVKFSPN---GKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       164 -------~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~~i~~~~~s~~---g~~l~~~s~d~~v~vwd~~~  227 (231)
                             ++.++++++.||.|++||+++++...   .....+...+..++|+|+   +++|++++.||.|++||...
T Consensus       164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                   69999999999999999998765322   223345678999999999   89999999999999999643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.9e-34  Score=223.86  Aligned_cols=207  Identities=18%  Similarity=0.340  Sum_probs=180.5

Q ss_pred             cceeEEeecccccceEEEEECCCC-CEEEEEeCCCcEEEeecCCCcEEEEEe--cccccEEEEEECC-CCCEEEEecCCC
Q psy4391          16 NYVLKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSS-DSRLLVSGSDDK   91 (231)
Q Consensus        16 ~~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~~g   91 (231)
                      .+.+...+.+|...|.+++|+|++ ++|++|+.||.|++|+..++.....+.  +|...|.+++|+| +++++++++.|+
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            345566778999999999999999 899999999999999998887776665  5888999999999 778999999999


Q ss_pred             cEEEEeCCCceeeeeecC---CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCC-e
Q psy4391          92 TLKIWELSSGKCLKTLKG---HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-L  167 (231)
Q Consensus        92 ~i~~~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  167 (231)
                      .|++||+.+. ....+..   +...+.+++|+|+++++++++.|+.|++||++ ++.+..+..|...|.+++|+|+++ +
T Consensus       142 ~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          142 ATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCE
Confidence            9999999864 3444433   34779999999999999999999999999994 677888889999999999999999 8


Q ss_pred             EEEEecCCeEEEEeCCC----CceeeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC
Q psy4391         168 IVSSSYDGLCRIWDTAS----GQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +++++.|+.|++||+++    +..+..+  .+...+..++|+| +|++|++++.|+.|++||..
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence            99999999999999987    4444444  3567899999999 99999999999999999964

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-36  Score=236.01  Aligned_cols=201  Identities=15%  Similarity=0.190  Sum_probs=168.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC--cEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~  102 (231)
                      .|...|.+++|+|++++|++|+.||.|++|+..++  .....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~   88 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG   88 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            35678999999999999999999999999999877  5666777899999999999999999999999999999999876


Q ss_pred             ---eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc---eeeeccC-CCCCeEEEEEcCCCCeEEEEecCC
Q psy4391         103 ---CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK---CLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus       103 ---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                         ....+..|...+.+++|+|+++++++++.|+.|++||++.++   ....+.. |...|.+++|+|++++|++++.|+
T Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~  168 (377)
T 3dwl_C           89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR  168 (377)
T ss_dssp             CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred             ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence               556677888999999999999999999999999999999876   3566666 899999999999999999999999


Q ss_pred             eEEEEeCCC------------------CceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         176 LCRIWDTAS------------------GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       176 ~i~v~d~~~------------------~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .|++||+..                  ++.+..+  .+...+..++|+|+|++|++++.||.|++||...
T Consensus       169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~  236 (377)
T 3dwl_C          169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA  236 (377)
T ss_dssp             CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred             EEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            999999853                  3333333  5667799999999999999999999999999643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.7e-35  Score=234.36  Aligned_cols=209  Identities=17%  Similarity=0.241  Sum_probs=173.0

Q ss_pred             ceeEEeecccccceEEEEECC-CCCEEEEEeCCCcEEEeecCCCcEE--EEEecccccEEEEEECC-CCCEEEEecCCCc
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSS-DSRLLVSGSDDKT   92 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~   92 (231)
                      +.+.....+|...|++++|+| ++++||+|+.||.|++||..++...  ..+.+|...|.+++|+| ++++|++++.||.
T Consensus       109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~  188 (435)
T 4e54_B          109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT  188 (435)
T ss_dssp             TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred             eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            334445567889999999999 5678999999999999998766543  34457889999999998 6889999999999


Q ss_pred             EEEEeCCCceeeeeecC--CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCC-eEE
Q psy4391          93 LKIWELSSGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIV  169 (231)
Q Consensus        93 i~~~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~  169 (231)
                      |++||++++........  +...+.+++|+|++.+|++|+.||.|++||++. +.+..+..|...|.+++|+|++. +++
T Consensus       189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLA  267 (435)
T ss_dssp             EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred             EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEE
Confidence            99999987654333322  234567889999999999999999999999974 55677889999999999999886 677


Q ss_pred             EEecCCeEEEEeCCCCceeeeee--cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         170 SSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +++.|+.|++||+++.+....+.  ..+..+|.+++|+|+|++|++++.||.|+|||..
T Consensus       268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred             EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence            89999999999998876544332  3456789999999999999999999999999963

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.5e-34  Score=239.37  Aligned_cols=210  Identities=30%  Similarity=0.469  Sum_probs=183.7

Q ss_pred             ceeEEeecccccceEEEEECCCC-CEEEEEeCCCcEEEeecCCC-----cEEEEEecccccEEEEEECCCCCEEEEecCC
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGISDVAWSSDSRLLVSGSDD   90 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~-~~l~~~~~dg~i~i~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~   90 (231)
                      ..++..+.+|.+.|++++|+|++ ++|++|+.|+.|++|+....     .....+.+|...|.+++|+|++++|++++.|
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            34556688999999999999865 69999999999999998643     3456788999999999999999999999999


Q ss_pred             CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeee---ccCCCCCeEEEEEcCCC--
Q psy4391          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT---LPAHSDPVSAVHFNRDG--  165 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~---~~~~~~~v~~~~~~~~~--  165 (231)
                      +.|++||+.+++..+.+.+|...|.+++|+|+++.|++++.|+.|++||+........   ...|...|.+++|+|++  
T Consensus       452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            9999999999999999999999999999999999999999999999999875543322   24677889999999987  


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ..+++++.|+.|++||+++++....+. .+...|.+++|+|+|++|++++.||.|++||...
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred             ceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            579999999999999999988766654 4566899999999999999999999999999643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2e-34  Score=227.06  Aligned_cols=207  Identities=22%  Similarity=0.424  Sum_probs=181.7

Q ss_pred             eecccccceEEEEECC-CCCEEEEEeCCCcEEEeecCCC-------cEEEEEecccccEEEEEECCCC-CEEEEecCCCc
Q psy4391          22 TLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG-------KFEKTISGHKLGISDVAWSSDS-RLLVSGSDDKT   92 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~   92 (231)
                      .+.+|.+.|.+++|+| ++++|++|+.||.|++|+..++       .....+.+|...|.+++|+|++ .++++++.|+.
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence            3568999999999999 8999999999999999999876       4567788899999999999998 68999999999


Q ss_pred             EEEEeCCCceeeeee--cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec-cCCCCC-eEEEEEcCCCCeE
Q psy4391          93 LKIWELSSGKCLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-PAHSDP-VSAVHFNRDGSLI  168 (231)
Q Consensus        93 i~~~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l  168 (231)
                      |++||+.+++....+  ..|...+.+++|+|++++|++++.|+.|++||+++++.+..+ ..|.+. +.++.|+|++.++
T Consensus       156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (402)
T 2aq5_A          156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL  235 (402)
T ss_dssp             EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred             EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence            999999999988888  788899999999999999999999999999999999988887 677665 8899999999999


Q ss_pred             EEE---ecCCeEEEEeCCCCce-eeeeecCCCCCeEEEEECCCCCEEEE-EeCCCeEEEEeCCCC
Q psy4391         169 VSS---SYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDSYPC  228 (231)
Q Consensus       169 ~~~---~~dg~i~v~d~~~~~~-~~~~~~~~~~~i~~~~~s~~g~~l~~-~s~d~~v~vwd~~~~  228 (231)
                      ++|   +.|+.|++||+++++. .......+...+..++|+|++++|++ ++.||.|++||....
T Consensus       236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~  300 (402)
T 2aq5_A          236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE  300 (402)
T ss_dssp             EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred             EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence            999   7899999999988664 33333345567889999999999975 557999999997543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-34  Score=225.19  Aligned_cols=203  Identities=18%  Similarity=0.263  Sum_probs=169.0

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEE----EEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK----TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ..+|...|.+++|+|+++++ +++.||.|++||+.+++...    ...+|...|.+++|+|++++|++++.|+.|++||+
T Consensus        90 ~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~  168 (357)
T 4g56_B           90 GVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL  168 (357)
T ss_dssp             EEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred             cCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            34688899999999998755 56789999999997765432    33467889999999999999999999999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCC-EEEEeecCCcEEEEECCCCceeeec--cCCCCCeEEEEEcCCC-CeEEEEecC
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDG-SLIVSSSYD  174 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~-~~l~~~~~d  174 (231)
                      .+++.+..+..|...+.+++|+|++. ++++++.|+.|++||+++++....+  ..+...+.+++|+|++ .+|++|+.|
T Consensus       169 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d  248 (357)
T 4g56_B          169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET  248 (357)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred             CCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence            99999999999999999999999874 7899999999999999988876554  3456789999999975 578899999


Q ss_pred             CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCC
Q psy4391         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~s~d~~v~vwd~~~  227 (231)
                      +.|++||+++++.+..+. .+...|..++|+|++ ++|++++.|+.|+|||...
T Consensus       249 ~~i~~wd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          249 GNVSLVNIKNPDSAQTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             SCEEEEESSCGGGCEEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             cceeEEECCCCcEeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence            999999999988777664 445679999999997 5789999999999999743

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.2e-33  Score=214.77  Aligned_cols=212  Identities=30%  Similarity=0.493  Sum_probs=184.3

Q ss_pred             ccceeEEeecccccceEEEEECCC-CCEEEEEeCCCcEEEeecCCCc-----EEEEEecccccEEEEEECCCCCEEEEec
Q psy4391          15 PNYVLKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGK-----FEKTISGHKLGISDVAWSSDSRLLVSGS   88 (231)
Q Consensus        15 ~~~~~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~   88 (231)
                      .+..++.+|+||.+.|++++|+|+ +++|++|+.||.|++|++....     ....+.+|...|.+++|+|+++++++++
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence            345677789999999999999997 6899999999999999986543     4556788899999999999999999999


Q ss_pred             CCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce-eeeccCCCCCeEEEEEcCCC--
Q psy4391          89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-LKTLPAHSDPVSAVHFNRDG--  165 (231)
Q Consensus        89 ~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~--  165 (231)
                      .|+.|++|+............+...+....+++++..+++++.|+.+++||+..... ......|...+..++|++++  
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  185 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN  185 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred             ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence            999999999999888777777778888899999999999999999999999986654 33456778899999998865  


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .++++++.|+.|++||+.+++.+..+. .+..+|.+++|+|+|++|++++.||.|++||...
T Consensus       186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          186 PIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             cEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence            467899999999999999998776654 4556899999999999999999999999999744

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.9e-34  Score=227.97  Aligned_cols=205  Identities=24%  Similarity=0.444  Sum_probs=178.4

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      ...+.+|...|.+++|+|++++|++++.||.|++||..+++....+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~  211 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG  211 (420)
T ss_dssp             EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence            34556899999999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             CceeeeeecCC---Ccce---------------------EEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc-CCCC
Q psy4391         100 SGKCLKTLKGH---SNYV---------------------FCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSD  154 (231)
Q Consensus       100 ~~~~~~~~~~~---~~~v---------------------~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~  154 (231)
                      +++....+..+   ...+                     .+++|+|+++++++++.||.|++||+++++.+..+. .|..
T Consensus       212 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  291 (420)
T 3vl1_A          212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC  291 (420)
T ss_dssp             TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS
T ss_pred             CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCC
Confidence            99888777642   2333                     344568899999999999999999999988766654 4778


Q ss_pred             CeEEEEEcCCCC-eEEEEecCCeEEEEeCCCCce-eeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         155 PVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       155 ~v~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .+.+++|+|++. ++++++.||.|++||+++++. +..+..++..++..+.+ +++++|++++.|+.|++||.
T Consensus       292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred             CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEec
Confidence            999999999999 999999999999999998754 56666656778888855 57889999999999999995

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.6e-34  Score=228.44  Aligned_cols=198  Identities=20%  Similarity=0.291  Sum_probs=177.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK  108 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~  108 (231)
                      .+....|++++++|++++.||.|++|+..++.....+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+.
T Consensus        99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  178 (420)
T 3vl1_A           99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI  178 (420)
T ss_dssp             EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred             ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc
Confidence            44555789999999999999999999999888877778899999999999999999999999999999999999888899


Q ss_pred             CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccC---CCCCeEE---------------------EEEcCC
Q psy4391         109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA---HSDPVSA---------------------VHFNRD  164 (231)
Q Consensus       109 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~v~~---------------------~~~~~~  164 (231)
                      .|...+.+++|+|+++++++++.|+.|++||+++++.+..+..   +...+.+                     ++|+|+
T Consensus       179 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  258 (420)
T 3vl1_A          179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY  258 (420)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC
Confidence            9999999999999999999999999999999999988777654   3334444                     445789


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCC
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSY  226 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s~d~~v~vwd~~  226 (231)
                      ++++++++.||.|++||+++++....+...+...+..++|+|+++ +|++++.||.|++||..
T Consensus       259 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          259 GKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             TEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence            999999999999999999999888777666777899999999999 99999999999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.9e-33  Score=212.85  Aligned_cols=203  Identities=23%  Similarity=0.380  Sum_probs=183.5

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ....+..|...|.+++|+|+++++++++.||.|++|+..+++....+..|...+.+++|+|+++.+++++.++.|++||+
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~  212 (337)
T 1gxr_A          133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL  212 (337)
T ss_dssp             EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence            34556688899999999999999999999999999999999888888888899999999999999999999999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      ++++....+. +...+.+++|+|+++++++++.++.|++||+++++. ..+..|...+.+++|+|+++++++++.||.++
T Consensus       213 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  290 (337)
T 1gxr_A          213 REGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             CCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEE
Confidence            9988777765 567799999999999999999999999999998765 45677889999999999999999999999999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +||+.+++.+...  .+...+..++|+|++++|++++.||.|++||.
T Consensus       291 ~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          291 AWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            9999998876443  34567899999999999999999999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.7e-34  Score=242.65  Aligned_cols=209  Identities=22%  Similarity=0.434  Sum_probs=193.4

Q ss_pred             eeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      .++..+.+|...|.+++|+|++++|++++.||.|++|+..++.....+.+|...|.+++|+|++++|++++.||.|++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            35566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCC-ceeeeccCCCCCeEEEEEcC-CCCeEEEEecCC
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTG-KCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDG  175 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg  175 (231)
                      +.+++....+..|...+.+++|+|++..+++++.|+.|++||++++ .....+..|..++.+++|+| ++..+++++.||
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  163 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence            9999999999999999999999999999999999999999999987 56677788999999999999 889999999999


Q ss_pred             eEEEEeCCCCceeeeeecCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeCC
Q psy4391         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~s~d~~v~vwd~~  226 (231)
                      .|++||+.+++....+.......+..++|+|  ++++|++++.||.|++||..
T Consensus       164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~  216 (814)
T 3mkq_A          164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ  216 (814)
T ss_dssp             EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT
T ss_pred             eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            9999999988877777666667788999999  99999999999999999964

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-32  Score=210.92  Aligned_cols=202  Identities=18%  Similarity=0.359  Sum_probs=181.5

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc--EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      ..+|...|.+++|+|++++|++++.||.|++|+..+++  ....+..+...+.+++|+|+++++++++.++.|++||+++
T Consensus        93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~  172 (337)
T 1gxr_A           93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN  172 (337)
T ss_dssp             CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence            33788999999999999999999999999999998776  4556677888899999999999999999999999999999


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEE
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~  180 (231)
                      ++....+..|...+.+++|+|+++.+++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.++.+++|
T Consensus       173 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~  251 (337)
T 1gxr_A          173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence            99988998899999999999999999999999999999999998777664 57789999999999999999999999999


Q ss_pred             eCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       181 d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      |+.+++...  ...+...+..++|+|++++|++++.||.|++||...
T Consensus       252 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~  296 (337)
T 1gxr_A          252 HVNKPDKYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             ETTSSCEEE--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ECCCCCeEE--EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence            999887542  334566799999999999999999999999999754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.8e-33  Score=234.55  Aligned_cols=205  Identities=34%  Similarity=0.587  Sum_probs=182.2

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ....+.+|...|.+++|+|++++|++|+.||.|++||..++.....+.+|...|.+++|+|++++|++++.|+.|++||.
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence            34567799999999999999999999999999999999999988999999999999999999999999999999999998


Q ss_pred             CCceeeeee---cCCCcceEEEEECCCC--CEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec
Q psy4391          99 SSGKCLKTL---KGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus        99 ~~~~~~~~~---~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                      .........   .+|...+.+++|+|++  ..+++++.|+.|++||+++++....+..|.+.|.+++|+|++++|++++.
T Consensus       502 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~  581 (694)
T 3dm0_A          502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK  581 (694)
T ss_dssp             TSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence            765433222   3577889999999986  58999999999999999999988899999999999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ||.|++||+.+++.+..+.  ....+..++|+|++.+|++++ ++.|++||..
T Consensus       582 Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~  631 (694)
T 3dm0_A          582 DGVVLLWDLAEGKKLYSLE--ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLE  631 (694)
T ss_dssp             TSBCEEEETTTTEEEECCB--CSSCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred             CCeEEEEECCCCceEEEec--CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence            9999999999998776653  345789999999998887766 6779999964

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=218.99  Aligned_cols=209  Identities=28%  Similarity=0.398  Sum_probs=179.1

Q ss_pred             eeEEeecccccceEEEEECCC--CCEEEEEeCCCcEEEeecCCCc--EEEEEecccccEEEEEECCC--CCEEEEecCCC
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD--SRLLVSGSDDK   91 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g   91 (231)
                      .....+.+|...|.+++|+++  +++|++++.||.|++|+..+++  ....+..|...+.+++|+|+  ++++++++.|+
T Consensus        46 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~  125 (379)
T 3jrp_A           46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  125 (379)
T ss_dssp             EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence            344567789999999999987  8999999999999999998876  56667778889999999999  99999999999


Q ss_pred             cEEEEeCCCce--eeeeecCCCcceEEEEECC-------------CCCEEEEeecCCcEEEEECCCCc----eeeeccCC
Q psy4391          92 TLKIWELSSGK--CLKTLKGHSNYVFCCNFNP-------------QSNLIVSGSFDESVRIWDVRTGK----CLKTLPAH  152 (231)
Q Consensus        92 ~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~  152 (231)
                      .|++||+.+..  ....+..|...+.+++|+|             ++.++++++.|+.|++||++++.    ....+..|
T Consensus       126 ~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h  205 (379)
T 3jrp_A          126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  205 (379)
T ss_dssp             EEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence            99999998763  3345667888999999999             69999999999999999998765    34566788


Q ss_pred             CCCeEEEEEcCC---CCeEEEEecCCeEEEEeCCCCcee--eeee--cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         153 SDPVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQCL--KTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       153 ~~~v~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~--~~~~--~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ...|.+++|+|+   +.+|++++.||.|++||+.+++..  ....  ..+...+..++|+|+|++|++++.||.|++||.
T Consensus       206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~  285 (379)
T 3jrp_A          206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  285 (379)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEE
T ss_pred             cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeC
Confidence            999999999999   899999999999999999876421  1111  225567899999999999999999999999996


Q ss_pred             C
Q psy4391         226 Y  226 (231)
Q Consensus       226 ~  226 (231)
                      .
T Consensus       286 ~  286 (379)
T 3jrp_A          286 N  286 (379)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.1e-33  Score=218.27  Aligned_cols=202  Identities=18%  Similarity=0.240  Sum_probs=176.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc--EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~  102 (231)
                      .|...|.+++|+|++++|++++.|+.|++|+..+++  ....+.+|...|.+++|+|+++++++++.|+.|++||+++++
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence            488999999999999999999999999999998876  777888899999999999999999999999999999998876


Q ss_pred             eeee--ecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce----eeeccCCCCCeEEEEEcCCCCeEEEEecCCe
Q psy4391         103 CLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (231)
Q Consensus       103 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  176 (231)
                      ....  +..+...+.+++|+|+++++++++.|+.|++||++.+..    ......|...+.+++|+|+++++++++.||.
T Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  165 (372)
T 1k8k_C           86 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  165 (372)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCC
Confidence            4433  356778899999999999999999999999999988762    2333567889999999999999999999999


Q ss_pred             EEEEeCC------------------CCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         177 CRIWDTA------------------SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       177 i~v~d~~------------------~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +++||+.                  .++.+..+. .+...+..++|+|++++|++++.||.|++||...
T Consensus       166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  233 (372)
T 1k8k_C          166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  233 (372)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             EEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            9999964                  455555443 4556799999999999999999999999999743

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-34  Score=233.84  Aligned_cols=205  Identities=14%  Similarity=0.120  Sum_probs=173.6

Q ss_pred             EeecccccceEEEEECCC------CCEEEEEeCCCcEEEeecCCCcE-----------EEEEecccccEEEEEECCCCCE
Q psy4391          21 FTLAGHTKAVSSVKFSPN------GEWLASSSADKLIKIWGAYDGKF-----------EKTISGHKLGISDVAWSSDSRL   83 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~------~~~l~~~~~dg~i~i~~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~   83 (231)
                      .++.+|.+.|.+++|+|+      +.+||+++.||.|++|++.++..           ...+.+|...|.+++|++++ .
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~  279 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T  279 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence            345677889999999997      57999999999999999876531           13566788899999999864 7


Q ss_pred             EEEecCCCcEEEEeCCCce-eeeeecCCCcceEEE--EECCCC-CEEEEeecCCcEEEEECCCCceeeeccCCC--CCeE
Q psy4391          84 LVSGSDDKTLKIWELSSGK-CLKTLKGHSNYVFCC--NFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHS--DPVS  157 (231)
Q Consensus        84 l~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~v~  157 (231)
                      |++|+.||.|++||++++. +...+..|...|.++  .++|++ .+|++++.|++|++||+++++.+..+..|.  ..+.
T Consensus       280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~  359 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV  359 (524)
T ss_dssp             EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred             EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence            9999999999999998763 445678899999998  578887 899999999999999999887766555543  2478


Q ss_pred             EEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         158 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       158 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +++|+|+++.+++++.|+.|++||++++..+..+.. +...|.+++|+|+|++|++|+.||.|++||...
T Consensus       360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-RETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE-CSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             ceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec-CCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            899999999999999999999999999887666654 567899999999999999999999999999643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.4e-34  Score=222.89  Aligned_cols=206  Identities=22%  Similarity=0.390  Sum_probs=177.3

Q ss_pred             eEEeecccccceEEEEECC-CCCEEEEEeCCCcEEEeecCCCcEEEEE---ecccccEEEEEECCCCCEEEEecCCCcEE
Q psy4391          19 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSSDSRLLVSGSDDKTLK   94 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~g~i~   94 (231)
                      ....+.+|...|.+++|+| ++++|++++.||.|++||..+++....+   ..|...+.+++|+|+++++++++.||.|+
T Consensus       107 ~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  186 (366)
T 3k26_A          107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK  186 (366)
T ss_dssp             EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEE
Confidence            3455678999999999999 8999999999999999999988888887   57888999999999999999999999999


Q ss_pred             EEeCCCceeeeeec----------------------------CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce-
Q psy4391          95 IWELSSGKCLKTLK----------------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-  145 (231)
Q Consensus        95 ~~d~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-  145 (231)
                      +||+.+++....+.                            .|...+.+++|+  ++++++++.|+.|++||++++.. 
T Consensus       187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~  264 (366)
T 3k26_A          187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDD  264 (366)
T ss_dssp             EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCC
T ss_pred             EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccc
Confidence            99998765443332                            277889999998  77999999999999999987644 


Q ss_pred             -------------eeeccCCCCCeEEEEEcCC--CCeEEEEecCCeEEEEeCCCCceee----eeecC-CCCCeEEEEEC
Q psy4391         146 -------------LKTLPAHSDPVSAVHFNRD--GSLIVSSSYDGLCRIWDTASGQCLK----TLIDD-DNPPVSFVKFS  205 (231)
Q Consensus       146 -------------~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~~----~~~~~-~~~~i~~~~~s  205 (231)
                                   +..+..|...+.+++|+|+  +++|++++.||.|++||+.+++...    .+..+ +...|..++|+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  344 (366)
T 3k26_A          265 IDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFS  344 (366)
T ss_dssp             GGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEEC
T ss_pred             ccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeC
Confidence                         5666778888999999999  9999999999999999999876432    33322 25789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCC
Q psy4391         206 PNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       206 ~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      |++++|++++.||.|++||..
T Consensus       345 ~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          345 RDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCeEEEEeCCCEEEEEEec
Confidence            999999999999999999964

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.2e-33  Score=227.56  Aligned_cols=200  Identities=42%  Similarity=0.730  Sum_probs=180.3

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      ..+.+|...|.+++|+|++++|++++.||.+++|+. +++....+.+|...|.+++|+|++++|++++.|+.|++||. +
T Consensus       338 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~  415 (577)
T 2ymu_A          338 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N  415 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred             EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-C
Confidence            345678999999999999999999999999999996 56777888889999999999999999999999999999996 4


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEE
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~  180 (231)
                      ++.+..+..|...+.+++|+|+++++++++.|+.|++||.. ++.+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus       416 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw  494 (577)
T 2ymu_A          416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW  494 (577)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence            66777888899999999999999999999999999999974 66778888999999999999999999999999999999


Q ss_pred             eCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       181 d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      |. +++.+..+. .+...|..++|+|+|++|++++.||.|++||.
T Consensus       495 ~~-~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          495 NR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             ET-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             cC-CCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            96 566666654 45567999999999999999999999999995

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-34  Score=225.07  Aligned_cols=204  Identities=16%  Similarity=0.219  Sum_probs=167.8

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc---EEEEEecccccEEEEEECCCCCEEEEecCCCcEEE
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~   95 (231)
                      ...++.+|...|.+++|+|++++|++++.||.|++|+..++.   ....+..|...+.+++|+|++++|++++.|+.|++
T Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  126 (377)
T 3dwl_C           47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISV  126 (377)
T ss_dssp             ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEE
T ss_pred             EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEE
Confidence            445567899999999999999999999999999999998766   56667788899999999999999999999999999


Q ss_pred             EeCCCce---eeeeecC-CCcceEEEEECCCCCEEEEeecCCcEEEEECC------------------CCceeeeccCCC
Q psy4391          96 WELSSGK---CLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR------------------TGKCLKTLPAHS  153 (231)
Q Consensus        96 ~d~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~------------------~~~~~~~~~~~~  153 (231)
                      ||+++++   ....+.. |...+.+++|+|+++++++++.|+.|++||++                  .++.+..+ .|.
T Consensus       127 wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  205 (377)
T 3dwl_C          127 CYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG  205 (377)
T ss_dssp             CCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS
T ss_pred             EEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC
Confidence            9999876   3566776 88999999999999999999999999999985                  24455556 888


Q ss_pred             CCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce----eeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         154 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC----LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       154 ~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ..|.+++|+|++++|++++.||.|++||+.+++.    +..+. .+..++..++|+|+|++|++++.++.+ +|+.
T Consensus       206 ~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~  279 (377)
T 3dwl_C          206 GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVAAGYNYSPI-LLQG  279 (377)
T ss_dssp             SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred             ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence            9999999999999999999999999999998876    44443 455679999999999999998866655 6664

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=8.6e-33  Score=214.88  Aligned_cols=207  Identities=19%  Similarity=0.282  Sum_probs=180.3

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEE--ecccccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      ....+.+|...|.+++|+|++++|++++.||.|++|+..+++.....  ..+...+.+++|+|+++++++++.++.|++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            44566789999999999999999999999999999999877654443  5677889999999999999999999999999


Q ss_pred             eCCCcee----eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECC------------------CCceeeeccCCCC
Q psy4391          97 ELSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR------------------TGKCLKTLPAHSD  154 (231)
Q Consensus        97 d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~------------------~~~~~~~~~~~~~  154 (231)
                      |+..++.    ......|...+.+++|+|+++++++++.|+.|++||++                  .++.+..+..|..
T Consensus       124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (372)
T 1k8k_C          124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG  203 (372)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred             EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC
Confidence            9987652    22335677889999999999999999999999999953                  5677788888999


Q ss_pred             CeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       155 ~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .+.+++|+|++++|++++.||.|++||+.+++.+..+.. +..++..++|+|++++|+++ .|+.|++||...
T Consensus       204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc-CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            999999999999999999999999999999988777654 45678999999999988888 899999999754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-32  Score=217.64  Aligned_cols=206  Identities=22%  Similarity=0.348  Sum_probs=182.8

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEE----------------------------------
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT----------------------------------   64 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~----------------------------------   64 (231)
                      ....+.+|...|.+++|+|++++|++++.||.|++|+..+++....                                  
T Consensus       141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (425)
T 1r5m_A          141 LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF  220 (425)
T ss_dssp             EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEE
T ss_pred             eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEE
Confidence            3345668999999999999999999999999999999876654332                                  


Q ss_pred             ----------------------EecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCC
Q psy4391          65 ----------------------ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ  122 (231)
Q Consensus        65 ----------------------~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~  122 (231)
                                            +..|...+.+++|+|+++++++++.++.|++||+.+++....+..|...+.++.|+|+
T Consensus       221 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  300 (425)
T 1r5m_A          221 VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD  300 (425)
T ss_dssp             EEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT
T ss_pred             EEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCC
Confidence                                  2245567899999999999999999999999999998888888888899999999999


Q ss_pred             CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCc----------------
Q psy4391         123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ----------------  186 (231)
Q Consensus       123 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----------------  186 (231)
                      + .+++++.|+.|++||+++++.+..+..|...+.+++|+|++++|++++.||.|++||+.+++                
T Consensus       301 ~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  379 (425)
T 1r5m_A          301 D-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNP  379 (425)
T ss_dssp             T-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------C
T ss_pred             C-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCc
Confidence            9 99999999999999999999998888899999999999999999999999999999998877                


Q ss_pred             ----eeeeeecCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         187 ----CLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       187 ----~~~~~~~~~~~-~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                          .+..+..+... .+..++|+|++++|++++.||.|++||.
T Consensus       380 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          380 LPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             EECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             ccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence                56665544333 8999999999999999999999999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.9e-33  Score=221.38  Aligned_cols=199  Identities=21%  Similarity=0.419  Sum_probs=167.6

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc-----------EEEEEeccc------------ccEEEEEECCCC-
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------FEKTISGHK------------LGISDVAWSSDS-   81 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~-   81 (231)
                      |.+.|++++|+|+|++|++|+.||.|++|+..++.           ....+.+|.            ..|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            67899999999999999999999999999998765           466777887            779999999998 


Q ss_pred             -CEEEEecCCCcEEEEeCCCceee---------------------------------------ee-ecCCCcceEEEEEC
Q psy4391          82 -RLLVSGSDDKTLKIWELSSGKCL---------------------------------------KT-LKGHSNYVFCCNFN  120 (231)
Q Consensus        82 -~~l~~~~~~g~i~~~d~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~  120 (231)
                       ..+++++.|+.|++||+.+++..                                       +. ..+|...|.+++|+
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             78999999999999998764431                                       12 35688889999999


Q ss_pred             CCCCEEEEeecCCcEEEEECCC-Cceee-------eccCCCCCeEEEEEcCCC-CeEEEEecCCeEEEEeCCCCce----
Q psy4391         121 PQSNLIVSGSFDESVRIWDVRT-GKCLK-------TLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQC----  187 (231)
Q Consensus       121 ~~~~~l~~~~~d~~i~v~d~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~----  187 (231)
                      |++++++++ .|+.|++||++. ++.+.       .+..|...|.+++|+|++ .+|++++.||.|++||+++++.    
T Consensus       187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  265 (447)
T 3dw8_B          187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH  265 (447)
T ss_dssp             TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred             CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence            999999998 799999999984 43433       356788999999999998 9999999999999999998875    


Q ss_pred             eeeeecCCC-----------CCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         188 LKTLIDDDN-----------PPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       188 ~~~~~~~~~-----------~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ...+..+..           ..+..++|+|+|++|++++. +.|++||..
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred             eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence            444433332           27999999999999999998 999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5.7e-33  Score=217.85  Aligned_cols=207  Identities=22%  Similarity=0.300  Sum_probs=180.5

Q ss_pred             EEeeccc-----ccceEEEEEC----CCCCE-EEEEeCCCcEEEeecCC------CcEEE-----EE-------eccccc
Q psy4391          20 KFTLAGH-----TKAVSSVKFS----PNGEW-LASSSADKLIKIWGAYD------GKFEK-----TI-------SGHKLG   71 (231)
Q Consensus        20 ~~~~~~h-----~~~i~~~~~~----~~~~~-l~~~~~dg~i~i~~~~~------~~~~~-----~~-------~~~~~~   71 (231)
                      ...+..|     ...|.+++|+    |++++ |++++.||.|++|+..+      +....     .+       ..+...
T Consensus       109 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (397)
T 1sq9_A          109 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF  188 (397)
T ss_dssp             EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC
T ss_pred             ceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC
Confidence            3455667     5899999999    99999 99999999999999877      44433     45       336778


Q ss_pred             EEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecC---C---CcceEEEEECCCCCEEEEeecC---CcEEEEECCC
Q psy4391          72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG---H---SNYVFCCNFNPQSNLIVSGSFD---ESVRIWDVRT  142 (231)
Q Consensus        72 v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---~~i~v~d~~~  142 (231)
                      +.+++|+|++ .+++++.++.|++||+.+++.+..+..   |   ...+.+++|+|++++|++++.|   +.|++||+++
T Consensus       189 i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~  267 (397)
T 1sq9_A          189 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF  267 (397)
T ss_dssp             CCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred             ceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            9999999999 999999999999999999998888888   7   8899999999999999999999   9999999999


Q ss_pred             CceeeeccC-------------CCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeec-----CC---------
Q psy4391         143 GKCLKTLPA-------------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-----DD---------  195 (231)
Q Consensus       143 ~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-----~~---------  195 (231)
                      ++.+..+..             |...|.+++|+|++++|++++.||.|++||+.+++.+..+..     .+         
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~  347 (397)
T 1sq9_A          268 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE  347 (397)
T ss_dssp             CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred             CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccc
Confidence            998888887             899999999999999999999999999999999988877761     23         


Q ss_pred             ------CCCeEEEEECCCC----------CEEEEEeCCCeEEEEeCCC
Q psy4391         196 ------NPPVSFVKFSPNG----------KYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       196 ------~~~i~~~~~s~~g----------~~l~~~s~d~~v~vwd~~~  227 (231)
                            ..+|..++|+|+|          ++|++++.||.|++||...
T Consensus       348 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          348 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence                  6789999999998          7999999999999999643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-33  Score=225.05  Aligned_cols=211  Identities=19%  Similarity=0.329  Sum_probs=174.5

Q ss_pred             ccceeEEee-cccccceEEEEECC-CCCEEEEEeCCCcEEEeecCC---Cc---EEEEEecccccEEEEEECCCCCEEEE
Q psy4391          15 PNYVLKFTL-AGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYD---GK---FEKTISGHKLGISDVAWSSDSRLLVS   86 (231)
Q Consensus        15 ~~~~~~~~~-~~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~~   86 (231)
                      +...+..++ .+|.+.|++++|+| ++++|++|+.||.|++|+..+   +.   ....+ .|...|.+++|+|++++|++
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s  128 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV  128 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence            334455666 78999999999999 999999999999999999865   32   12222 47889999999999999999


Q ss_pred             ecCCCcEEEEeCC---CceeeeeecC------------CCcceEEEE--ECCCCCEEEEeecCCcEEEEECCCCceeeec
Q psy4391          87 GSDDKTLKIWELS---SGKCLKTLKG------------HSNYVFCCN--FNPQSNLIVSGSFDESVRIWDVRTGKCLKTL  149 (231)
Q Consensus        87 ~~~~g~i~~~d~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  149 (231)
                      ++.||.|++||+.   +++.......            +...+.++.  +++++.++++++.|+.|++||+++++.+..+
T Consensus       129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  208 (437)
T 3gre_A          129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII  208 (437)
T ss_dssp             EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence            9999999999995   3333322221            334455555  6688999999999999999999999998888


Q ss_pred             cC--CCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEEC----CCCCEEEEEeCCCeEEEE
Q psy4391         150 PA--HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS----PNGKYILAATLDNTLKLW  223 (231)
Q Consensus       150 ~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s----~~g~~l~~~s~d~~v~vw  223 (231)
                      ..  |.+.|.+++|+|++++|++++.||.|++||+++++.+..+...+..+|..++|+    |++++|++++.||.|++|
T Consensus       209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw  288 (437)
T 3gre_A          209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW  288 (437)
T ss_dssp             ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred             ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence            77  789999999999999999999999999999999988887754556688999554    578899999999999999


Q ss_pred             eCC
Q psy4391         224 DSY  226 (231)
Q Consensus       224 d~~  226 (231)
                      |..
T Consensus       289 d~~  291 (437)
T 3gre_A          289 NFV  291 (437)
T ss_dssp             ETT
T ss_pred             EcC
Confidence            974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-33  Score=237.65  Aligned_cols=201  Identities=16%  Similarity=0.222  Sum_probs=174.7

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      ...+|...|++++|+|++++||+|+.||.|++|+.........+ .|...|.+++|+| +++|++++.|+.|++||+.++
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~   89 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ   89 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence            34589999999999999999999999999999998766554443 4667899999999 889999999999999999998


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCcee-----------eeccCCCCCeEEEEEcCC-CCeEE
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL-----------KTLPAHSDPVSAVHFNRD-GSLIV  169 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~  169 (231)
                      +.+..+. +...+.+++|+|+++++++|+.||.|++||+++++..           .....|.++|.+++|+|+ +..++
T Consensus        90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~  168 (902)
T 2oaj_A           90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL  168 (902)
T ss_dssp             SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred             cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence            8887776 5678999999999999999999999999999988753           234568889999999996 47899


Q ss_pred             EEecCCeEEEEeCCCCceeeeeecC-----------------CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         170 SSSYDGLCRIWDTASGQCLKTLIDD-----------------DNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~-----------------~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +|+.||.| +||+++++.+..+..+                 +...|.+++|+|+|++|++++.||.|++||..
T Consensus       169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~  241 (902)
T 2oaj_A          169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN  241 (902)
T ss_dssp             EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence            99999999 9999998877666433                 23569999999999999999999999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.1e-33  Score=219.39  Aligned_cols=208  Identities=19%  Similarity=0.270  Sum_probs=181.4

Q ss_pred             eEEeecccccceEEEEECCC----C---CEEEEEeCCCcEEEeecCCCcE-----EEEEecc-----cccEEEEEEC---
Q psy4391          19 LKFTLAGHTKAVSSVKFSPN----G---EWLASSSADKLIKIWGAYDGKF-----EKTISGH-----KLGISDVAWS---   78 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~----~---~~l~~~~~dg~i~i~~~~~~~~-----~~~~~~~-----~~~v~~~~~~---   78 (231)
                      ....+.+|...|.+++|+|+    +   ++|++++.||.|++|+..++..     ...+..+     ...|.+++|+   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            44566689999999999999    9   9999999999999999987765     6777777     5889999999   


Q ss_pred             -CCCCE-EEEecCCCcEEEEeCCC------ceeee-----ee-------cCCCcceEEEEECCCCCEEEEeecCCcEEEE
Q psy4391          79 -SDSRL-LVSGSDDKTLKIWELSS------GKCLK-----TL-------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIW  138 (231)
Q Consensus        79 -~~~~~-l~~~~~~g~i~~~d~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~  138 (231)
                       |+++. +++++.||.|++||+.+      ++.+.     .+       ..+...+.+++|+|++ ++++++.|+.|++|
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~  212 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS  212 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence             99999 99999999999999988      65555     55       3467789999999999 99999999999999


Q ss_pred             ECCCCceeeeccC---C---CCCeEEEEEcCCCCeEEEEecC---CeEEEEeCCCCceeeeeecC------------CCC
Q psy4391         139 DVRTGKCLKTLPA---H---SDPVSAVHFNRDGSLIVSSSYD---GLCRIWDTASGQCLKTLIDD------------DNP  197 (231)
Q Consensus       139 d~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~------------~~~  197 (231)
                      |+++++.+..+..   |   ...+.+++|+|++++|++++.|   |.|++||+.+++.+..+...            +..
T Consensus       213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (397)
T 1sq9_A          213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS  292 (397)
T ss_dssp             ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred             ECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence            9999998888888   8   8999999999999999999999   99999999999887776541            567


Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         198 PVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       198 ~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .+..++|+|++++|++++.||.|++||...
T Consensus       293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            899999999999999999999999999743

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.7e-32  Score=242.39  Aligned_cols=209  Identities=30%  Similarity=0.533  Sum_probs=188.3

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ....+.+|.+.|++++|+|+|+++++|+.||.|++|+..++.....+.+|...|.+++|+|+++++++++.|+.|++||+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence            34567799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECC--CCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCe
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  176 (231)
                      .+++.+..+..|...+.++.|+|  ++.++++++.|+.|++||+++++.+..+..|.+.|.+++|+|+++++++++.||.
T Consensus       687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~  766 (1249)
T 3sfz_A          687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT  766 (1249)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred             CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence            99999999999999999999999  5568999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCceeeeee------------------------------------------------------cCCCCCeEEE
Q psy4391         177 CRIWDTASGQCLKTLI------------------------------------------------------DDDNPPVSFV  202 (231)
Q Consensus       177 i~v~d~~~~~~~~~~~------------------------------------------------------~~~~~~i~~~  202 (231)
                      |++||+.+++....+.                                                      ..+...+..+
T Consensus       767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~  846 (1249)
T 3sfz_A          767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC  846 (1249)
T ss_dssp             EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred             EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence            9999987765433221                                                      1334567788


Q ss_pred             EECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         203 KFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       203 ~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +|+|+++++++++.||.|++||...
T Consensus       847 ~~sp~~~~l~~~~~dg~v~vwd~~~  871 (1249)
T 3sfz_A          847 DFSPYDHLAVIALSQYCVELWNIDS  871 (1249)
T ss_dssp             EECSSTTEEEEECSSSCEEEEETTT
T ss_pred             EEcCCCCEEEEEeCCCeEEEEEcCC
Confidence            9999999999999999999999643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.8e-32  Score=213.45  Aligned_cols=206  Identities=21%  Similarity=0.430  Sum_probs=176.0

Q ss_pred             EeecccccceEEEEECC-CCCEEEEEeCCCcEEEeecCCCcEEEEEe-------------cccccEEEEEECC-CCCEEE
Q psy4391          21 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTIS-------------GHKLGISDVAWSS-DSRLLV   85 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~~l~   85 (231)
                      ..+.+|.+.|.+++|+| ++++|++|+.||.|++|+..++.....+.             +|...|.+++|+| ++++++
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            44568999999999999 99999999999999999998764332222             4778899999999 778999


Q ss_pred             EecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCC---CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEc
Q psy4391          86 SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ---SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN  162 (231)
Q Consensus        86 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~  162 (231)
                      +++.||.|++||+.+++....+. +...+.++.++|.   +.++++++.++.|++||+++++.+..+..|...|.+++|+
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~  195 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWS  195 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEEC
T ss_pred             EEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEEC
Confidence            99999999999999988877776 5667888888884   4599999999999999999999888999999999999999


Q ss_pred             CCCCe-EEEEecCCeEEEEeCCCCceeeeee---------------cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         163 RDGSL-IVSSSYDGLCRIWDTASGQCLKTLI---------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       163 ~~~~~-l~~~~~dg~i~v~d~~~~~~~~~~~---------------~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      |++++ +++++.||.|++||++++.......               ..+...+..++|+|+|++|++++.||.|++||..
T Consensus       196 ~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~  275 (408)
T 4a11_B          196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS  275 (408)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECC
Confidence            99985 8899999999999998765222111               2455679999999999999999999999999964


Q ss_pred             C
Q psy4391         227 P  227 (231)
Q Consensus       227 ~  227 (231)
                      .
T Consensus       276 ~  276 (408)
T 4a11_B          276 N  276 (408)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.2e-32  Score=210.97  Aligned_cols=210  Identities=22%  Similarity=0.364  Sum_probs=171.5

Q ss_pred             ceeEEeecccccceEEEEECCC---CCEEEEEeCCCcEEEeecCC-CcEE-EEEecccccEEEEEECCCCCEEEEecCCC
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPN---GEWLASSSADKLIKIWGAYD-GKFE-KTISGHKLGISDVAWSSDSRLLVSGSDDK   91 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~---~~~l~~~~~dg~i~i~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~g   91 (231)
                      ......+.+|.+.|++++|+|+   |++|++|+.||.|++|+..+ +... ..+.+|...|.+++|+|++++|++++.||
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK  108 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence            3344567899999999999999   69999999999999999986 4444 67778899999999999999999999999


Q ss_pred             cEEEEeCCCceeeeeecCCCcceEEEEE--CCCCCEEEEeecCCcEEEEECCCCceeeeccCCC----------------
Q psy4391          92 TLKIWELSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS----------------  153 (231)
Q Consensus        92 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----------------  153 (231)
                      .|++||+.+++... +..|...+.++.|  +|++.++++++.|+.|++||+++++.+..+..+.                
T Consensus       109 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVAT  187 (368)
T ss_dssp             EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEE
T ss_pred             cEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEe
Confidence            99999999988766 4458888999999  9999999999999999999999887655443322                


Q ss_pred             -------------------------CCeEEEEEcCCCCe----EEEEecCCeEEEEeCCCC---ceeeeeecCCCC----
Q psy4391         154 -------------------------DPVSAVHFNRDGSL----IVSSSYDGLCRIWDTASG---QCLKTLIDDDNP----  197 (231)
Q Consensus       154 -------------------------~~v~~~~~~~~~~~----l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~----  197 (231)
                                               ....++++.++...    +++++.||.+++||+...   +....+..+...    
T Consensus       188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  267 (368)
T 3mmy_A          188 AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT  267 (368)
T ss_dssp             GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred             CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence                                     23445555554444    899999999999999876   333333332221    


Q ss_pred             -------CeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         198 -------PVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       198 -------~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                             ++..++|+|++++|++++.||.|++||...
T Consensus       268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             cccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence                   689999999999999999999999999754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-32  Score=212.53  Aligned_cols=198  Identities=23%  Similarity=0.451  Sum_probs=177.0

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      |...|.+++|+|++++|++++.||.|++|+ .++.....+..|...+.+++|+|++++|++++.++.|++||+.+++...
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            678999999999999999999999999999 5677888888899999999999999999999999999999998765433


Q ss_pred             e--------------------------------------------------------ecCCCcceEEEEECCCCCEEEEe
Q psy4391         106 T--------------------------------------------------------LKGHSNYVFCCNFNPQSNLIVSG  129 (231)
Q Consensus       106 ~--------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~  129 (231)
                      .                                                        +..|...+.+++|+|++++++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  265 (425)
T 1r5m_A          186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA  265 (425)
T ss_dssp             EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence            2                                                        23456678899999999999999


Q ss_pred             ecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC
Q psy4391         130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK  209 (231)
Q Consensus       130 ~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~  209 (231)
                      +.|+.|++||+++++.+..+..|...+.+++|+|++ ++++++.|+.|++||+.+++.+..+. .+...+..++|+|+++
T Consensus       266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~  343 (425)
T 1r5m_A          266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI-VDGVPIFAGRISQDGQ  343 (425)
T ss_dssp             ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE-CTTCCEEEEEECTTSS
T ss_pred             cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc-cCCccEEEEEEcCCCC
Confidence            999999999999998888888899999999999999 99999999999999999988776655 3456789999999999


Q ss_pred             EEEEEeCCCeEEEEeCC
Q psy4391         210 YILAATLDNTLKLWDSY  226 (231)
Q Consensus       210 ~l~~~s~d~~v~vwd~~  226 (231)
                      +|++++.||.|++||..
T Consensus       344 ~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          344 KYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             EEEEEETTSCEEEEECH
T ss_pred             EEEEEECCCeEEEEECC
Confidence            99999999999999963

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.8e-33  Score=218.24  Aligned_cols=208  Identities=21%  Similarity=0.360  Sum_probs=181.4

Q ss_pred             eEEeecccccceEEEEECCC-CCEEEEEeCCCcEEEeecCCCc------EEEE---EecccccEEEEEECCC-CCEEEEe
Q psy4391          19 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGK------FEKT---ISGHKLGISDVAWSSD-SRLLVSG   87 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~------~~~~---~~~~~~~v~~~~~~~~-~~~l~~~   87 (231)
                      ....+.+|...|.+++|+|+ +++|++++.||.|++||..++.      ....   ...|...+.+++|+|+ +.+++++
T Consensus       105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  184 (416)
T 2pm9_A          105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA  184 (416)
T ss_dssp             EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred             chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence            44566789999999999998 8899999999999999998765      2222   3467788999999998 7889999


Q ss_pred             cCCCcEEEEeCCCceeeeeecCC------CcceEEEEECCCC-CEEEEeecCC---cEEEEECCCC-ceeeecc-CCCCC
Q psy4391          88 SDDKTLKIWELSSGKCLKTLKGH------SNYVFCCNFNPQS-NLIVSGSFDE---SVRIWDVRTG-KCLKTLP-AHSDP  155 (231)
Q Consensus        88 ~~~g~i~~~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d~---~i~v~d~~~~-~~~~~~~-~~~~~  155 (231)
                      +.|+.|++||+++++.+..+..+      ...+.+++|+|++ .++++++.++   .|++||++++ ..+..+. .|...
T Consensus       185 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~  264 (416)
T 2pm9_A          185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG  264 (416)
T ss_dssp             SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC
T ss_pred             cCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc
Confidence            99999999999999888888765      6789999999997 6899999998   9999999986 5666777 78999


Q ss_pred             eEEEEEcC-CCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCC
Q psy4391         156 VSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       156 v~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~s~d~~v~vwd~~~  227 (231)
                      |.+++|+| ++++|++++.||.|++||+.+++.+..+.. +...+..++|+|++ ++|++++.||.|++||...
T Consensus       265 v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA-RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC-SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC-CCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            99999999 999999999999999999999988777654 44578889999999 8999999999999999743

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=219.51  Aligned_cols=211  Identities=19%  Similarity=0.387  Sum_probs=172.5

Q ss_pred             ccceeEEeecccc------------cceEEEEECCCC--CEEEEEeCCCcEEEeecCCCcEE------------------
Q psy4391          15 PNYVLKFTLAGHT------------KAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFE------------------   62 (231)
Q Consensus        15 ~~~~~~~~~~~h~------------~~i~~~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~------------------   62 (231)
                      ..+.+...+.+|.            ..|.+++|+|++  ..|++++.||.|++|+..++...                  
T Consensus        69 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~  148 (447)
T 3dw8_B           69 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTT  148 (447)
T ss_dssp             CCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCC
T ss_pred             cceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCccc
Confidence            3455566778898            889999999998  78999999999999998653321                  


Q ss_pred             ---------------------EE-EecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC-ceeee-------eecCCCc
Q psy4391          63 ---------------------KT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCLK-------TLKGHSN  112 (231)
Q Consensus        63 ---------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~-~~~~~-------~~~~~~~  112 (231)
                                           .. ..+|...|.+++|+|++++|+++ .|+.|++||+.+ ++...       .+..|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  227 (447)
T 3dw8_B          149 VTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTE  227 (447)
T ss_dssp             CCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC
T ss_pred             ccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCc
Confidence                                 12 24688889999999999999998 799999999984 44443       2457888


Q ss_pred             ceEEEEECCCC-CEEEEeecCCcEEEEECCCCce----eeeccCCCC------------CeEEEEEcCCCCeEEEEecCC
Q psy4391         113 YVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKC----LKTLPAHSD------------PVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus       113 ~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg  175 (231)
                      .+.+++|+|++ +++++++.|+.|++||+++++.    +..+..|..            .|.+++|+|++++|++++. +
T Consensus       228 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~  306 (447)
T 3dw8_B          228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L  306 (447)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S
T ss_pred             ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C
Confidence            89999999998 9999999999999999998876    677777765            8999999999999999998 9


Q ss_pred             eEEEEeCCC-CceeeeeecCCCC--------------CeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         176 LCRIWDTAS-GQCLKTLIDDDNP--------------PVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       176 ~i~v~d~~~-~~~~~~~~~~~~~--------------~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .|++||+++ ++.+..+..+...              .+..++|+|+|++|++++.||.|++||...
T Consensus       307 ~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          307 SVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             EEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred             eEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence            999999987 7666665433210              022389999999999999999999999743

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-33  Score=233.87  Aligned_cols=207  Identities=23%  Similarity=0.371  Sum_probs=177.2

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecC--CCcEEEEEecccccEEEEEECCC--CCEEEEecCCCcEEEE
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDVAWSSD--SRLLVSGSDDKTLKIW   96 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g~i~~~   96 (231)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++|+..  +......+.+|...|.+++|+|+  ++++++++.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            4567999999999999999999999999999999987  44556677889999999999988  9999999999999999


Q ss_pred             eCCCce--eeeeecCCCcceEEEEECCC--CCEEEEeecCCcEEEEECCCCc--eeeeccCCCCCeEEEEEcC-------
Q psy4391          97 ELSSGK--CLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHFNR-------  163 (231)
Q Consensus        97 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~-------  163 (231)
                      |+.+++  ....+..|...+.++.|+|+  +..+++++.||.|++||++.+.  ....+..|...|.+++|+|       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            999876  66777788999999999999  9999999999999999998773  3345567889999999999       


Q ss_pred             ------CCCeEEEEecCCeEEEEeCCCCcee---eeeecCCCCCeEEEEECCC---CCEEEEEeCCCeEEEEeCCC
Q psy4391         164 ------DGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPN---GKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       164 ------~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~~i~~~~~s~~---g~~l~~~s~d~~v~vwd~~~  227 (231)
                            ++.++++|+.||.|++||++++...   ......+..+|.+++|+|+   +++|++++.||.|++||...
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence                  5899999999999999999876422   2223355678999999999   99999999999999999643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=5e-31  Score=202.58  Aligned_cols=208  Identities=32%  Similarity=0.544  Sum_probs=177.3

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ...++.+|...|.+++|+|++++|++++.|+.|++|+............+...+....++++++.+++++.|+.+++||.
T Consensus        78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~  157 (340)
T 4aow_A           78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT  157 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence            34567899999999999999999999999999999999888877777777778888999999999999999999999999


Q ss_pred             CCcee-eeeecCCCcceEEEEECCCC--CEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC
Q psy4391          99 SSGKC-LKTLKGHSNYVFCCNFNPQS--NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus        99 ~~~~~-~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                      ..... ......|...+..+++++++  .++++++.|+.|++||+++++.+..+..|.++|.+++|+|++++|++++.||
T Consensus       158 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg  237 (340)
T 4aow_A          158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG  237 (340)
T ss_dssp             TSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred             CCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            76543 33455677888899998764  5788999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeeeeec------------------------------------------------CCCCCeEEEEECCC
Q psy4391         176 LCRIWDTASGQCLKTLID------------------------------------------------DDNPPVSFVKFSPN  207 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~------------------------------------------------~~~~~i~~~~~s~~  207 (231)
                      .|++||+.+.+.+..+..                                                .+...|.+++|+|+
T Consensus       238 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  317 (340)
T 4aow_A          238 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD  317 (340)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT
T ss_pred             eEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC
Confidence            999999987654332210                                                12345778889999


Q ss_pred             CCEEEEEeCCCeEEEEeCC
Q psy4391         208 GKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       208 g~~l~~~s~d~~v~vwd~~  226 (231)
                      |++|++|+.||.|+|||..
T Consensus       318 g~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          318 GQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             SSEEEEEETTSCEEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEeCC
Confidence            9999999999999999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-32  Score=217.62  Aligned_cols=201  Identities=15%  Similarity=0.139  Sum_probs=176.8

Q ss_pred             cccccceEEEEECCCCCEE-EEEeCCCcEEEeecC--CCcEEEEEe--cccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          24 AGHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAY--DGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      .+|...|.+++|+|++++| ++++.||.|++|+..  ++.....+.  .+...+.+++|+|++++|++++.+|.+++|++
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence            4677789999999999996 888899999999998  777777765  45578999999999999999999999999999


Q ss_pred             CCceeee----eecCCCcceEEEEECCC---CCEEEEeecCCcEEEEECCCCceeee-ccCCCCCeEEEEEcCCCCeEEE
Q psy4391          99 SSGKCLK----TLKGHSNYVFCCNFNPQ---SNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVS  170 (231)
Q Consensus        99 ~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~  170 (231)
                      .+++...    .+.+|...+.+++|+|+   +++|++++.|+.|++||+++++.+.. +..|...|.+++|+ ++++|++
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s  257 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLS  257 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEE
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEE
Confidence            8876543    66678889999999999   99999999999999999999887776 55889999999999 9999999


Q ss_pred             EecCCeEEEEeCCCCceeeeeec------------------------CCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeC
Q psy4391         171 SSYDGLCRIWDTASGQCLKTLID------------------------DDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~~~------------------------~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~  225 (231)
                      ++.|+.|++||+.+++.+..+..                        .....+..++|+|++++|++++ .|+.|++||.
T Consensus       258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            99999999999999987776642                        2234688999999999999999 8999999997

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.3e-32  Score=209.71  Aligned_cols=206  Identities=17%  Similarity=0.301  Sum_probs=173.4

Q ss_pred             eeEEeecccccceEEEEECCCCCEE-EEEeC---CCcEEEeecCCCcEEEEE-ecccccEEEEEECCC---CCEEEEecC
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNGEWL-ASSSA---DKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD---SRLLVSGSD   89 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~~~l-~~~~~---dg~i~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~   89 (231)
                      .+...+.+|...|.+++|+|+++.+ ++++.   ||.|++|+..+++..... .+|...|.+++|+|+   ++++++++.
T Consensus         9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~   88 (357)
T 3i2n_A            9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF   88 (357)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred             HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence            3455667899999999999999755 45655   899999999887765443 367789999999998   699999999


Q ss_pred             CCcEEEEeCCCce-eeeeecCCCcceEEEE------ECCCCCEEEEeecCCcEEEEECCCCc-eeeeccCCCC----CeE
Q psy4391          90 DKTLKIWELSSGK-CLKTLKGHSNYVFCCN------FNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSD----PVS  157 (231)
Q Consensus        90 ~g~i~~~d~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~----~v~  157 (231)
                      ||.|++||+.+++ ....+..|...+.++.      |+|+++++++++.|+.|++||++++. .+..+..+.+    .+.
T Consensus        89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  168 (357)
T 3i2n_A           89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW  168 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred             CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence            9999999999887 7888888999999985      57899999999999999999999886 5666655444    788


Q ss_pred             EEE----EcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECC---CCCEEEEEeCCCeEEEEeC
Q psy4391         158 AVH----FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP---NGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       158 ~~~----~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~~s~d~~v~vwd~  225 (231)
                      +++    |+|+++++++++.||.|++||+++++....  ..+...+..++|+|   ++.+|++++.||.|++||.
T Consensus       169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  241 (357)
T 3i2n_A          169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM  241 (357)
T ss_dssp             EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred             EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence            888    788999999999999999999999886443  33456799999999   9999999999999999996

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.6e-33  Score=219.95  Aligned_cols=209  Identities=21%  Similarity=0.374  Sum_probs=164.4

Q ss_pred             EEeecccccceEEEEECC-CCCEEEEEeCCCcEEEeecCCCcEEEEEecc--cccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          20 KFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      ...+.+|.+.|++++|+| ++++|++|+.||.|++||+++.........+  ...+.+++|+|++++|++++.||.|++|
T Consensus       157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w  236 (435)
T 4e54_B          157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL  236 (435)
T ss_dssp             EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred             EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence            345668999999999998 6889999999999999999765443333322  3346789999999999999999999999


Q ss_pred             eCCCceeeeeecCCCcceEEEEECCCCC-EEEEeecCCcEEEEECCCCceeee---ccCCCCCeEEEEEcCCCCeEEEEe
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKT---LPAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      |++. +.+..+..|...|.+++|+|++. ++++++.|+.|++||+++.+....   ...|..+|.+++|+|++.+|++++
T Consensus       237 d~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~  315 (435)
T 4e54_B          237 NMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD  315 (435)
T ss_dssp             ESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred             ccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence            9875 45667788999999999999876 788999999999999988764433   356888999999999999999999


Q ss_pred             cCCeEEEEeCCCCceeeee------------------------------------------------------------e
Q psy4391         173 YDGLCRIWDTASGQCLKTL------------------------------------------------------------I  192 (231)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~------------------------------------------------------------~  192 (231)
                      .||.|++||+.+++....+                                                            .
T Consensus       316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~  395 (435)
T 4e54_B          316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY  395 (435)
T ss_dssp             SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC
T ss_pred             CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe
Confidence            9999999998764321110                                                            1


Q ss_pred             cCCCCCeEEE-EECCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy4391         193 DDDNPPVSFV-KFSPNGKYILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       193 ~~~~~~i~~~-~~s~~g~~l~~~s~d~~v~vwd~~~~~~  230 (231)
                      ..+...|.++ +|+|+|++|++|+ |+.|+|||..+.-|
T Consensus       396 ~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          396 DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            1122233444 6999999999876 88999999876543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-32  Score=212.80  Aligned_cols=203  Identities=20%  Similarity=0.378  Sum_probs=174.7

Q ss_pred             eecccccceEEEEECCC----CCEEEEEeCCCcEEEeecCCCcEEEEEec-----ccccEEEEEECCC----CCEEEEec
Q psy4391          22 TLAGHTKAVSSVKFSPN----GEWLASSSADKLIKIWGAYDGKFEKTISG-----HKLGISDVAWSSD----SRLLVSGS   88 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~----~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~   88 (231)
                      ...+|.+.|.+++|+|+    ...+++++.++.|++|+..++.....+..     +...+.+++|+|+    ++++++++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999984    44666666778999999987776666654     3467999999998    67899999


Q ss_pred             CCCcEEEEeCCCceeeeeecCCCcceEEEEECC-CCCEEEEeecCCcEEEEECCCCceeeec---cCCCCCeEEEEEcCC
Q psy4391          89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTL---PAHSDPVSAVHFNRD  164 (231)
Q Consensus        89 ~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~  164 (231)
                      .||.|++||+.+++.+..+..|...+.+++|+| ++.++++++.|+.|++||+++++.+..+   ..|...|.+++|+|+
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            999999999999999999999999999999999 8999999999999999999999888777   678999999999999


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeeeec---------------------------CCCCCeEEEEECCCCCEEEEEeCC
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQCLKTLID---------------------------DDNPPVSFVKFSPNGKYILAATLD  217 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---------------------------~~~~~i~~~~~s~~g~~l~~~s~d  217 (231)
                      ++++++++.||.|++||+++++....+..                           .+...|.+++|+  +++|++++.|
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  250 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE  250 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence            99999999999999999988764432211                           155678889998  7899999999


Q ss_pred             CeEEEEeCC
Q psy4391         218 NTLKLWDSY  226 (231)
Q Consensus       218 ~~v~vwd~~  226 (231)
                      +.|++||..
T Consensus       251 ~~i~~wd~~  259 (366)
T 3k26_A          251 NAIVCWKPG  259 (366)
T ss_dssp             SEEEEEEES
T ss_pred             CEEEEEeCC
Confidence            999999964

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.9e-31  Score=211.29  Aligned_cols=208  Identities=25%  Similarity=0.511  Sum_probs=169.6

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec---------------------------------
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG---------------------------------   67 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~---------------------------------   67 (231)
                      +.+.+|...|++++|+|+|++|++|+.||.|++|+..+++....+.+                                 
T Consensus       141 ~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~  220 (420)
T 4gga_A          141 LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE  220 (420)
T ss_dssp             EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS
T ss_pred             EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccc
Confidence            44567888999999999999999999999999999987765544333                                 


Q ss_pred             --------ccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce----eeeeecCCCcceEEEEECCCC-CEEEE--eecC
Q psy4391          68 --------HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK----CLKTLKGHSNYVFCCNFNPQS-NLIVS--GSFD  132 (231)
Q Consensus        68 --------~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~--~~~d  132 (231)
                              |...+..+.|+|+++++++++.|+.+++|+..+++    .+.....+...|.+++|+|.+ .++++  |+.|
T Consensus       221 ~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D  300 (420)
T 4gga_A          221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  300 (420)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred             eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence                    33445667778888888888888888888887654    234455677889999999965 45554  3579


Q ss_pred             CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe--cCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCE
Q psy4391         133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY  210 (231)
Q Consensus       133 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  210 (231)
                      +.|++||+++++....+..+ ..+.++.|+|+++.+++++  .|+.|++||+.+++.+..+.. +...|..++|+|+|++
T Consensus       301 ~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g-H~~~V~~l~~spdg~~  378 (420)
T 4gga_A          301 RHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGAT  378 (420)
T ss_dssp             CEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSC
T ss_pred             CEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCE
Confidence            99999999999988887655 5788899999999888765  789999999999998887754 5668999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCCC
Q psy4391         211 ILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       211 l~~~s~d~~v~vwd~~~~~~  230 (231)
                      |++|+.|++|+|||.++.-|
T Consensus       379 l~S~s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          379 VASAAADETLRLWRCFELDP  398 (420)
T ss_dssp             EEEEETTTEEEEECCSCSSC
T ss_pred             EEEEecCCeEEEEECCCCCc
Confidence            99999999999999866443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-31  Score=210.26  Aligned_cols=198  Identities=26%  Similarity=0.434  Sum_probs=177.5

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC-Ccee
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS-SGKC  103 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~-~~~~  103 (231)
                      .|...|.+++|+|++++|++|+.||.|++|+..+++....+.+|...+.+++|  +++.+++++.||.|++||+. ....
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~  209 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ  209 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence            37889999999999999999999999999999999999999999999999999  45799999999999999998 4566


Q ss_pred             eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCe-EEEEe--cCCeEEEE
Q psy4391         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSL-IVSSS--YDGLCRIW  180 (231)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~v~  180 (231)
                      ...+..|...+.+++|+|++.++++++.|+.|++||+++++.+..+..|...|.+++|+|++.. +++++  .|+.|++|
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~  289 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW  289 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred             eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence            7778889999999999999999999999999999999999988888889999999999997754 45544  79999999


Q ss_pred             eCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe--CCCeEEEEeCC
Q psy4391         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT--LDNTLKLWDSY  226 (231)
Q Consensus       181 d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s--~d~~v~vwd~~  226 (231)
                      |+.+++.+..+.  ....+..++|+|+++++++++  .||.|++||..
T Consensus       290 d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~  335 (401)
T 4aez_A          290 NAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS  335 (401)
T ss_dssp             ETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred             ECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence            999998877764  345799999999999999954  89999999964

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=216.71  Aligned_cols=203  Identities=17%  Similarity=0.319  Sum_probs=176.2

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCC----CcEEEEEecccccEEEEEECCC-CCEEEEecCCCcEEEEeCC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~g~i~~~d~~   99 (231)
                      .|...|.+++|+|++++|++++.||.|++|+..+    ......+.+|...|.+++|+|+ ++++++++.|+.|++||+.
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            5788999999999999999999999999999976    3477778889999999999998 8999999999999999998


Q ss_pred             Cce------eeee---ecCCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCceeeeccCC------CCCeEEEEEcC
Q psy4391         100 SGK------CLKT---LKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAH------SDPVSAVHFNR  163 (231)
Q Consensus       100 ~~~------~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~  163 (231)
                      +++      ....   ...|...+.+++|+|+ +.++++++.|+.|++||+++++.+..+..+      ...+.+++|+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (416)
T 2pm9_A          145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP  224 (416)
T ss_dssp             TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred             CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence            876      3222   3567788999999999 789999999999999999999888887766      78899999999


Q ss_pred             CC-CeEEEEecCC---eEEEEeCCCCc-eeeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCC
Q psy4391         164 DG-SLIVSSSYDG---LCRIWDTASGQ-CLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       164 ~~-~~l~~~~~dg---~i~v~d~~~~~-~~~~~~~~~~~~i~~~~~s~-~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ++ .++++++.|+   .|++||+++++ ....+...+...+..++|+| ++++|++++.||.|++||...
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~  294 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES  294 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred             CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence            97 5889999998   99999999864 34433315667899999999 999999999999999999744

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-31  Score=203.45  Aligned_cols=208  Identities=25%  Similarity=0.401  Sum_probs=181.8

Q ss_pred             CCCccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCC
Q psy4391          12 NPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK   91 (231)
Q Consensus        12 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g   91 (231)
                      +|...+.+..++.+|.+.|.+++| +++++|++++.||.|++|+..++.....+..|...+.+++|+|+++++++++.|+
T Consensus         3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg   81 (313)
T 3odt_A            3 DPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT   81 (313)
T ss_dssp             --CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred             CccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence            345566777888999999999999 9999999999999999999988888888888899999999999999999999999


Q ss_pred             cEEEEeCCCc---eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcC-CCCe
Q psy4391          92 TLKIWELSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGSL  167 (231)
Q Consensus        92 ~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  167 (231)
                      .+++|++...   +....+..|...+.++.|  +++.+++++.|+.|++||  .++....+..|..++.++++.| ++.+
T Consensus        82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (313)
T 3odt_A           82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK  157 (313)
T ss_dssp             CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred             eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence            9999998753   456677788899999998  578999999999999999  6677788888999999999988 8999


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +++++.||.+++||.  .+....+...+...+..++|+|++. +++++.||.|++||...
T Consensus       158 l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~  214 (313)
T 3odt_A          158 FLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT  214 (313)
T ss_dssp             EEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT
T ss_pred             EEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc
Confidence            999999999999993  4445555554677899999999998 89999999999999753

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.6e-32  Score=207.32  Aligned_cols=197  Identities=17%  Similarity=0.201  Sum_probs=152.6

Q ss_pred             ccceEEEEECCC----CCEEEEEeC--------------------CCcEEEeec-CCCcEEEEEecccccEEEEEECC--
Q psy4391          27 TKAVSSVKFSPN----GEWLASSSA--------------------DKLIKIWGA-YDGKFEKTISGHKLGISDVAWSS--   79 (231)
Q Consensus        27 ~~~i~~~~~~~~----~~~l~~~~~--------------------dg~i~i~~~-~~~~~~~~~~~~~~~v~~~~~~~--   79 (231)
                      .+.|.+++++|+    ++.+++++.                    |+.|++|++ .+++....+..|...+..++|+|  
T Consensus       111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~  190 (356)
T 2w18_A          111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ  190 (356)
T ss_dssp             EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred             ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence            346778888888    777776553                    788888888 44777777777877888888888  


Q ss_pred             -CCCEEEEecCCCcEEEEeCCCceeeeeecCCC---cceEEEEECCCCCEE------------EEeecCCcEEEEECCCC
Q psy4391          80 -DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHS---NYVFCCNFNPQSNLI------------VSGSFDESVRIWDVRTG  143 (231)
Q Consensus        80 -~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~d~~i~v~d~~~~  143 (231)
                       ++..|++++.|++|++||+++++.++.+.++.   ..+.+++|+|++.++            ++|+.|+++++||..++
T Consensus       191 g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg  270 (356)
T 2w18_A          191 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT  270 (356)
T ss_dssp             TSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred             CCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence             67899999999999999999999999987643   356677899999876            56788999999999999


Q ss_pred             ceeeec-----cCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCC
Q psy4391         144 KCLKTL-----PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN  218 (231)
Q Consensus       144 ~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~  218 (231)
                      +.+..+     ..|...+.+..+  ++.++++++.|++|++||+.+++.+.++..+....+..++|+|||++|++|+.|+
T Consensus       271 k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~  348 (356)
T 2w18_A          271 LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDG  348 (356)
T ss_dssp             EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTS
T ss_pred             EEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCC
Confidence            876554     244444443333  4788999999999999999999998887655555566789999999999999999


Q ss_pred             eEEEEeC
Q psy4391         219 TLKLWDS  225 (231)
Q Consensus       219 ~v~vwd~  225 (231)
                      +|+|||.
T Consensus       349 TIklWd~  355 (356)
T 2w18_A          349 NIFVYHY  355 (356)
T ss_dssp             CEEEEEE
T ss_pred             cEEEecC
Confidence            9999985

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-31  Score=205.15  Aligned_cols=207  Identities=19%  Similarity=0.301  Sum_probs=181.6

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC-----CcE
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD-----KTL   93 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----g~i   93 (231)
                      ....+.+|...|.+++|+|++++|++++.||.|++|+..+++....+. +...+.+++|+|+++++++++.+     +.|
T Consensus        66 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i  144 (369)
T 3zwl_B           66 RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSI  144 (369)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEE
T ss_pred             hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEE
Confidence            345677899999999999999999999999999999999888887777 67789999999999999999998     999


Q ss_pred             EEEeCCCce-----------eeeeecCCCc--ceEEEEECCCCCEEEEeecCCcEEEEECCC-CceeeeccCCCCCeEEE
Q psy4391          94 KIWELSSGK-----------CLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAV  159 (231)
Q Consensus        94 ~~~d~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~  159 (231)
                      ++||+....           ....+..+..  .+.+++|+|+++++++++.++.|++||+++ ++.+..+..|...+.++
T Consensus       145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  224 (369)
T 3zwl_B          145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM  224 (369)
T ss_dssp             EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred             EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence            999987543           2223334444  789999999999999999999999999998 67788888899999999


Q ss_pred             EEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCC--------------eEEEEeC
Q psy4391         160 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN--------------TLKLWDS  225 (231)
Q Consensus       160 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~--------------~v~vwd~  225 (231)
                      +|+|++++|++++.||.|++||+.+++.+..+.  ....+..++|+|+++++++++.++              .+++||.
T Consensus       225 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~  302 (369)
T 3zwl_B          225 QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK  302 (369)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred             EECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence            999999999999999999999999998877765  456789999999999999999988              8999997


Q ss_pred             CCC
Q psy4391         226 YPC  228 (231)
Q Consensus       226 ~~~  228 (231)
                      ...
T Consensus       303 ~~~  305 (369)
T 3zwl_B          303 IFE  305 (369)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=8.5e-32  Score=213.93  Aligned_cols=207  Identities=28%  Similarity=0.506  Sum_probs=175.8

Q ss_pred             eeEEeecccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcE-------EEEEecccccEEEEEECC-CCCEEEEec
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKF-------EKTISGHKLGISDVAWSS-DSRLLVSGS   88 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~   88 (231)
                      ....++.+|...|.+++|+|++. +|++|+.||.|++|++..+..       ...+..|...|.+++|+| ++..+++++
T Consensus       172 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~  251 (430)
T 2xyi_A          172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA  251 (430)
T ss_dssp             CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE
T ss_pred             CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe
Confidence            34456678999999999999998 999999999999999976321       345567888899999999 678889999


Q ss_pred             CCCcEEEEeCCCc---eeeeeecCCCcceEEEEECCCCC-EEEEeecCCcEEEEECCC-CceeeeccCCCCCeEEEEEcC
Q psy4391          89 DDKTLKIWELSSG---KCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNR  163 (231)
Q Consensus        89 ~~g~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~  163 (231)
                      .++.|++||+.++   +....+..|...+.+++|+|++. ++++|+.|+.|++||++. +..+..+..|...|.+++|+|
T Consensus       252 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             TTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred             CCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence            9999999999876   46667778889999999999987 788999999999999997 456778888999999999999


Q ss_pred             CCC-eEEEEecCCeEEEEeCCCC--------------ceeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeC
Q psy4391         164 DGS-LIVSSSYDGLCRIWDTASG--------------QCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDS  225 (231)
Q Consensus       164 ~~~-~l~~~~~dg~i~v~d~~~~--------------~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s~d~~v~vwd~  225 (231)
                      +++ ++++++.||.|++||+...              +.+.. ...+...+..++|+|+++ +|++++.||.|+||+.
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE-CCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE-cCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence            986 6889999999999999762              22222 234556799999999999 8999999999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.5e-32  Score=212.17  Aligned_cols=197  Identities=20%  Similarity=0.290  Sum_probs=167.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCC-EEEEecCCCcEEEEeCCC---
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWELSS---  100 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~d~~~---  100 (231)
                      +|...|.+++|+|++++|++++.||.|++||. +++....+..|...|.+++|+|+++ ++++++.|+.|++||+.+   
T Consensus       161 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  239 (383)
T 3ei3_B          161 SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD  239 (383)
T ss_dssp             CSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS
T ss_pred             CCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc
Confidence            34578999999999999999999999999998 5677788888999999999999998 899999999999999987   


Q ss_pred             -ceeeeeecCCCcceEEEEECC-CCCEEEEeecCCcEEEEECCCCceeeeccCCC-----------------CCeEEEEE
Q psy4391         101 -GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-----------------DPVSAVHF  161 (231)
Q Consensus       101 -~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----------------~~v~~~~~  161 (231)
                       +..+..+ .|...+.+++|+| ++.++++++.|+.|++||+++++....+..|.                 +.+..++|
T Consensus       240 ~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  318 (383)
T 3ei3_B          240 KNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR  318 (383)
T ss_dssp             TTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred             ccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEe
Confidence             5555555 5788999999999 99999999999999999999887655544321                 23445667


Q ss_pred             cCCCCeEEEEecCCeEEEEeCCCCceeeeeecC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         162 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       162 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +|++++  +++.||.|++||+.+++.+..+... +...+..++|+|+|++|++++ |+.|++||..
T Consensus       319 s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~  381 (383)
T 3ei3_B          319 YPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE  381 (383)
T ss_dssp             BCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred             cCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence            777776  7788999999999999988877653 355677789999999999997 9999999964

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-31  Score=210.00  Aligned_cols=206  Identities=27%  Similarity=0.446  Sum_probs=178.5

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecC-CCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      ....+.+|...|.+++|  +++.+++++.||.|++||.. .......+.+|...+.+++|+|+++++++++.|+.|++||
T Consensus       168 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd  245 (401)
T 4aez_A          168 KLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD  245 (401)
T ss_dssp             EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEcc
Confidence            33456689999999999  56799999999999999998 4566777888999999999999999999999999999999


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCC-CEEEEee--cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE--e
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--S  172 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~  172 (231)
                      +.+++....+..|...+.+++|+|++ .++++++  .|+.|++||+++++.+..+. +...+.+++|+|++++++++  +
T Consensus       246 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~  324 (401)
T 4aez_A          246 ARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGF  324 (401)
T ss_dssp             TTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECT
T ss_pred             CCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeec
Confidence            99998888888899999999999976 5666654  79999999999998887775 56789999999999999984  4


Q ss_pred             cCCeEEEEeCCCCceeeee-ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         173 YDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~-~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .||.|++||+.+++..... ...+...+..++|+|+|++|++++.||.|++||...
T Consensus       325 ~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          325 PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             TTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             CCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            8999999999987655443 234566789999999999999999999999999744

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6.3e-32  Score=214.68  Aligned_cols=205  Identities=21%  Similarity=0.385  Sum_probs=175.0

Q ss_pred             EeecccccceEEEEECCC-CCEEEEEeCCCcEEEeecCC----------CcEEEEEecccccEEEEEECCCCC-EEEEec
Q psy4391          21 FTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD----------GKFEKTISGHKLGISDVAWSSDSR-LLVSGS   88 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~   88 (231)
                      .....|.+.|++++|+|+ +.+|++++.+|.|++|+...          ......+.+|...+.+++|+|++. +|++++
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            345579999999999997 67899999999999999875          456667788888999999999988 999999


Q ss_pred             CCCcEEEEeCCCcee-------eeeecCCCcceEEEEECC-CCCEEEEeecCCcEEEEECCCC---ceeeeccCCCCCeE
Q psy4391          89 DDKTLKIWELSSGKC-------LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTG---KCLKTLPAHSDPVS  157 (231)
Q Consensus        89 ~~g~i~~~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~v~  157 (231)
                      .||.|++|++.++..       ...+..|...+.+++|+| ++.++++++.|+.|++||++++   +.+..+..|...|.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987321       345667888999999999 6789999999999999999987   45666778899999


Q ss_pred             EEEEcCCCC-eEEEEecCCeEEEEeCCCC-ceeeeeecCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCC
Q psy4391         158 AVHFNRDGS-LIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSY  226 (231)
Q Consensus       158 ~~~~~~~~~-~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s~d~~v~vwd~~  226 (231)
                      +++|+|++. ++++|+.||.|++||+++. +.+..+ ..+...+..++|+|+++ +|++++.||.|+|||..
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe-ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence            999999987 5889999999999999984 334444 34567899999999995 68999999999999964

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-31  Score=227.77  Aligned_cols=208  Identities=27%  Similarity=0.479  Sum_probs=187.4

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ...++.+|...|.+++|+|++++|++++.||.|++|+..+++....+.+|...+.+++|+|++++|++++.||.|++||+
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~  126 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEG
T ss_pred             eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEEC
Confidence            34556689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCc-eeeeeecCCCcceEEEEECC-CCCEEEEeecCCcEEEEECCCCceeeeccCCC-CCeEEEEEcC--CCCeEEEEec
Q psy4391          99 SSG-KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-DPVSAVHFNR--DGSLIVSSSY  173 (231)
Q Consensus        99 ~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~  173 (231)
                      .++ .....+..|...+.+++|+| ++..+++++.|+.|++||++.+.....+..+. ..+..++|+|  ++.++++++.
T Consensus       127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  206 (814)
T 3mkq_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (814)
T ss_dssp             GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred             CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence            886 66777888889999999999 88999999999999999998887766665544 7899999999  9999999999


Q ss_pred             CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ||.|++||+.+++.+..+.. +...+..++|+|+|++|++++.||.|++||...
T Consensus       207 dg~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          207 DLTIKIWDYQTKSCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             CCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            99999999999887776643 456799999999999999999999999999743

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7e-31  Score=206.23  Aligned_cols=202  Identities=24%  Similarity=0.468  Sum_probs=172.8

Q ss_pred             ccccceEEEEECC-CCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCC---CCEEEEecCCCcEEEEeCCC
Q psy4391          25 GHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        25 ~h~~~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~g~i~~~d~~~  100 (231)
                      +|...|.+++|+| +++++++++.||.|++|+..++.....+. +...+..+.|.|.   +.++++++.++.|++||+.+
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            5899999999999 77899999999999999999887776665 5567889999884   45899999999999999999


Q ss_pred             ceeeeeecCCCcceEEEEECCCCC-EEEEeecCCcEEEEECCCCc-eeeec---------------cCCCCCeEEEEEcC
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGK-CLKTL---------------PAHSDPVSAVHFNR  163 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~-~~~~~---------------~~~~~~v~~~~~~~  163 (231)
                      ++....+..|...+.+++|+|++. ++++++.|+.|++||++.+. .+..+               ..|...|.+++|+|
T Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  255 (408)
T 4a11_B          176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS  255 (408)
T ss_dssp             SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred             cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence            998888998999999999999998 58999999999999998765 22222               46778999999999


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCceeee----------------------------------------------eecCCCC
Q psy4391         164 DGSLIVSSSYDGLCRIWDTASGQCLKT----------------------------------------------LIDDDNP  197 (231)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~----------------------------------------------~~~~~~~  197 (231)
                      +++++++++.||.|++||+.+++....                                              ....+..
T Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~  335 (408)
T 4a11_B          256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK  335 (408)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred             CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence            999999999999999999987543211                                              1123556


Q ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         198 PVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       198 ~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .|..++|+|++++|++++.||.|++||...
T Consensus       336 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          336 TVDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             eEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence            789999999999999999999999999743

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.7e-31  Score=218.94  Aligned_cols=205  Identities=23%  Similarity=0.377  Sum_probs=184.4

Q ss_pred             eEEeecccccc-eEEEEECC--CCCEEEEEeCCCcEEEeecCCC--------cEEEEEecccccEEEEEECCCCCEEEEe
Q psy4391          19 LKFTLAGHTKA-VSSVKFSP--NGEWLASSSADKLIKIWGAYDG--------KFEKTISGHKLGISDVAWSSDSRLLVSG   87 (231)
Q Consensus        19 ~~~~~~~h~~~-i~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~   87 (231)
                      ....+.+|... |.+++|+|  ++++|++++.||.|++|+..++        .....+..|...+.+++|+|++++++++
T Consensus        55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  134 (615)
T 1pgu_A           55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  134 (615)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe
Confidence            34566789999 99999999  9999999999999999999744        5566677788899999999999999999


Q ss_pred             cCC----CcEEEEeCCCceeeeeecCCCcceEEEEECCCCC-EEEEeecCCcEEEEECCCCceeeeccCCCC---CeEEE
Q psy4391          88 SDD----KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSD---PVSAV  159 (231)
Q Consensus        88 ~~~----g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~v~~~  159 (231)
                      +.+    +.|++||  .++....+..|...+.++.|+|++. .+++++.|+.|++||+++++.+..+..|..   .|.++
T Consensus       135 ~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~  212 (615)
T 1pgu_A          135 GEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDV  212 (615)
T ss_dssp             ECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEE
T ss_pred             ccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEE
Confidence            887    6888888  5667778888999999999999998 899999999999999999999999998988   99999


Q ss_pred             EEcCC-CCeEEEEecCCeEEEEeCCCCceeeeeec---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         160 HFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       160 ~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +|+|+ ++++++++.||.|++||+.+++.+..+..   .+...+..++|+ ++++|++++.|+.|++||..
T Consensus       213 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~  282 (615)
T 1pgu_A          213 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT  282 (615)
T ss_dssp             EECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred             EECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence            99999 99999999999999999999988877744   567789999999 99999999999999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.6e-31  Score=209.43  Aligned_cols=203  Identities=29%  Similarity=0.585  Sum_probs=178.9

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEEC--CCCCEEEEecCCCcEEEE
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--SDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~g~i~~~   96 (231)
                      ....+.+|.+.|.+++|++++ .+++|+.||.|++||..+++....+.+|...|.+++|+  +++.++++++.|+.|++|
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw  232 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW  232 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence            445677899999999999988 89999999999999999999888999999999999998  577899999999999999


Q ss_pred             eCCCcee-----------------------eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC
Q psy4391          97 ELSSGKC-----------------------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS  153 (231)
Q Consensus        97 d~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~  153 (231)
                      |+.++..                       ...+.+|...+.++  +++++++++++.|+.|++||+++++.+..+..|.
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  310 (464)
T 3v7d_B          233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  310 (464)
T ss_dssp             ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            9987542                       33455666666654  6788999999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         154 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       154 ~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ..+.+++|+|+++++++++.||.|++||+.+++.+..+.. +...+..++|+  +++|++++.||.|++||...
T Consensus       311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLS--DKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence            9999999999999999999999999999999988777654 55678889987  58999999999999999743

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.2e-30  Score=197.24  Aligned_cols=208  Identities=24%  Similarity=0.489  Sum_probs=170.0

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe----------------------------------
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----------------------------------   66 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~----------------------------------   66 (231)
                      +.+.+|...|++++|+|++++|++|+.||.|++|+..+++....+.                                  
T Consensus        61 ~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~  140 (318)
T 4ggc_A           61 LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE  140 (318)
T ss_dssp             EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCc
Confidence            4456788899999999999999999999999999998776544333                                  


Q ss_pred             -------cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee----eeeecCCCcceEEEEECCCCCEE---EEeecC
Q psy4391          67 -------GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC----LKTLKGHSNYVFCCNFNPQSNLI---VSGSFD  132 (231)
Q Consensus        67 -------~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d  132 (231)
                             +|...+..+.+.++++++++++.|+.|++||+.+++.    ......+...+..+.+.|++..+   ++++.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  220 (318)
T 4ggc_A          141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  220 (318)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred             eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence                   2344567788899999999999999999999987643    23344566778899999876533   456778


Q ss_pred             CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe--cCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCE
Q psy4391         133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY  210 (231)
Q Consensus       133 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  210 (231)
                      +.|++||.+........ .+...+..+.|+|++..+++++  .|+.|++||+.+++.+..+.. +...|.+++|+|+|++
T Consensus       221 ~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g-H~~~V~~l~~spdg~~  298 (318)
T 4ggc_A          221 RHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGAT  298 (318)
T ss_dssp             CEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSC
T ss_pred             CEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCE
Confidence            99999999988765554 4566899999999999887654  789999999999998887654 5678999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCCC
Q psy4391         211 ILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       211 l~~~s~d~~v~vwd~~~~~~  230 (231)
                      |++++.||.|+|||.++.-|
T Consensus       299 l~S~s~D~~v~iWd~~~~dP  318 (318)
T 4ggc_A          299 VASAAADETLRLWRCFELDP  318 (318)
T ss_dssp             EEEEETTTEEEEECCSCCCC
T ss_pred             EEEEecCCeEEEEECCCCCC
Confidence            99999999999999877654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3.9e-31  Score=205.19  Aligned_cols=201  Identities=16%  Similarity=0.228  Sum_probs=160.1

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCC
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSS  100 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~  100 (231)
                      +...|...|.+++|+|+|++|++|+.+| +++|+..+........  ...+..+.+.++++.+ ++++.++.|++||..+
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            4467999999999999999999988665 7899987665443332  2246677888888877 5677889999999999


Q ss_pred             ceeeeeecCCCcceEEEEECCCC-----------------------------------CEEEE--eecCCcEEEEECCCC
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQS-----------------------------------NLIVS--GSFDESVRIWDVRTG  143 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~l~~--~~~d~~i~v~d~~~~  143 (231)
                      ++.+..+. +...+.++.++++.                                   ..++.  |+.+|.|++||++++
T Consensus        91 ~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~  169 (355)
T 3vu4_A           91 KQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSS  169 (355)
T ss_dssp             TEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC-
T ss_pred             CcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCC
Confidence            98877776 44567777776542                                   23444  578899999999876


Q ss_pred             c----------------eeeeccCCCCCeEEEEEcCCCCeEEEEecCCe-EEEEeCCCCceeeeeecC-CCCCeEEEEEC
Q psy4391         144 K----------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLKTLIDD-DNPPVSFVKFS  205 (231)
Q Consensus       144 ~----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s  205 (231)
                      .                .+..+..|.++|.+++|+|++++|++++.|+. |++||+.+++.+..+... +...|..++|+
T Consensus       170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s  249 (355)
T 3vu4_A          170 GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS  249 (355)
T ss_dssp             -----------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEEC
T ss_pred             CccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEEC
Confidence            5                25678899999999999999999999999998 999999999988888733 67789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCC
Q psy4391         206 PNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       206 ~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      |+|++|++++.|+.|++||..
T Consensus       250 ~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          250 TDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             TTSCEEEEEETTCEEEEEESS
T ss_pred             CCCCEEEEEECCCEEEEEEcc
Confidence            999999999999999999963

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-32  Score=227.13  Aligned_cols=209  Identities=27%  Similarity=0.377  Sum_probs=179.5

Q ss_pred             eeEEeecccccceEEEEECCC--CCEEEEEeCCCcEEEeecCCCc--EEEEEecccccEEEEEECCC--CCEEEEecCCC
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPN--GEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSD--SRLLVSGSDDK   91 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g   91 (231)
                      ....++.+|.+.|.+++|+++  +++|++|+.||.|++|+..++.  ....+..|...|.+++|+|+  ++.+++++.||
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  123 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  123 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence            344567789999999999988  9999999999999999998876  55667788899999999999  99999999999


Q ss_pred             cEEEEeCCCce--eeeeecCCCcceEEEEECC-------------CCCEEEEeecCCcEEEEECCCC----ceeeeccCC
Q psy4391          92 TLKIWELSSGK--CLKTLKGHSNYVFCCNFNP-------------QSNLIVSGSFDESVRIWDVRTG----KCLKTLPAH  152 (231)
Q Consensus        92 ~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~  152 (231)
                      .|++||+.++.  ....+..|...+.++.|+|             ++..+++++.||.|++||++++    .....+..|
T Consensus       124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h  203 (753)
T 3jro_A          124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (753)
T ss_dssp             EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence            99999998763  3445567888999999999             5899999999999999999877    445667789


Q ss_pred             CCCeEEEEEcCC---CCeEEEEecCCeEEEEeCCCCceee--ee--ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         153 SDPVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQCLK--TL--IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       153 ~~~v~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~--~~--~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ..+|.+++|+|+   +.++++++.||.|++||+.+++...  ..  ...+...+..++|+|+|++|++++.||.|++||.
T Consensus       204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~  283 (753)
T 3jro_A          204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (753)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBC
T ss_pred             CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEec
Confidence            999999999999   8999999999999999998764211  11  1234567888999999999999999999999997


Q ss_pred             C
Q psy4391         226 Y  226 (231)
Q Consensus       226 ~  226 (231)
                      .
T Consensus       284 ~  284 (753)
T 3jro_A          284 N  284 (753)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-32  Score=215.68  Aligned_cols=202  Identities=17%  Similarity=0.299  Sum_probs=169.7

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecC---CCcEEEEEec------------ccccEEEEE--ECCCCCEEEEe
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISG------------HKLGISDVA--WSSDSRLLVSG   87 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~   87 (231)
                      +|...|.+++|+|++++|++++.||.|++|++.   +++.......            +...+.++.  +++++.+++++
T Consensus       109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (437)
T 3gre_A          109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL  188 (437)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence            589999999999999999999999999999984   4444333322            223345554  56789999999


Q ss_pred             cCCCcEEEEeCCCceeeeeecC--CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc-CCCCCeEEEEEc--
Q psy4391          88 SDDKTLKIWELSSGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHFN--  162 (231)
Q Consensus        88 ~~~g~i~~~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~--  162 (231)
                      +.|+.|++||+++++.+..+..  |...+.+++|+|++.++++++.|+.|++||+++++.+..+. .|..+|.+++|+  
T Consensus       189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  268 (437)
T 3gre_A          189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQF  268 (437)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTT
T ss_pred             eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccc
Confidence            9999999999999998888887  77899999999999999999999999999999998888775 677789999665  


Q ss_pred             --CCCCeEEEEecCCeEEEEeCCCCceeeeeecC-------------------------CCCCeEEEEECCCCCEEEEEe
Q psy4391         163 --RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-------------------------DNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       163 --~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------------------~~~~i~~~~~s~~g~~l~~~s  215 (231)
                        |++.++++++.||.|++||+.+++.+..+..+                         +...|.+++|+ ++++|++++
T Consensus       269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~  347 (437)
T 3gre_A          269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE  347 (437)
T ss_dssp             TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred             cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence              46779999999999999999998877766532                         33447788999 779999999


Q ss_pred             CCCeEEEEeCCC
Q psy4391         216 LDNTLKLWDSYP  227 (231)
Q Consensus       216 ~d~~v~vwd~~~  227 (231)
                      .|+.|++||...
T Consensus       348 ~d~~i~~wd~~~  359 (437)
T 3gre_A          348 ATSSIVMFSLNE  359 (437)
T ss_dssp             GGTEEEEEETTC
T ss_pred             CCCeEEEEECCC
Confidence            999999999643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.7e-31  Score=205.37  Aligned_cols=201  Identities=9%  Similarity=0.017  Sum_probs=174.0

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc---EEEEEecccccEEEEEECCCCC-EEEEecCCCcEEEEeC
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSR-LLVSGSDDKTLKIWEL   98 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~d~   98 (231)
                      ..+|.+.|.+++|+|++++|++++.||.|++|+..++.   ....+..|...|.+++|+|+++ ++++++.||.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            35799999999999999999999999999999997766   2444557888999999999999 9999999999999999


Q ss_pred             -CCceeeeeecC--CCcceEEEEECCCCCEEEEeecCCcEEEEECCC---------CceeeeccCCCCCeEEEEEcCCCC
Q psy4391          99 -SSGKCLKTLKG--HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT---------GKCLKTLPAHSDPVSAVHFNRDGS  166 (231)
Q Consensus        99 -~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~  166 (231)
                       .+++. ..+..  |...+.+++|+| +..+++++.|+.|++||+++         ++.+..+. +...+.+++|+|++ 
T Consensus        87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-  162 (342)
T 1yfq_A           87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-  162 (342)
T ss_dssp             SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred             ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-
Confidence             87654 56777  889999999999 99999999999999999987         66666665 78899999999987 


Q ss_pred             eEEEEecCCeEEEEeCCC-Cce-eeeeecCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC
Q psy4391         167 LIVSSSYDGLCRIWDTAS-GQC-LKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~-~~~-~~~~~~~~~~~i~~~~~s~-~g~~l~~~s~d~~v~vwd~~~~  228 (231)
                       +++++.|+.|++||+++ +.. .......+...+..++|+| +++++++++.||.|++||....
T Consensus       163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence             89999999999999988 543 2333445566899999999 9999999999999999997543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=207.33  Aligned_cols=201  Identities=18%  Similarity=0.332  Sum_probs=171.9

Q ss_pred             ccccceEEEEECCC---CCEEEEEeCCCcEEEeecCCCc-EEEEEecccccEEEEE------ECCCCCEEEEecCCCcEE
Q psy4391          25 GHTKAVSSVKFSPN---GEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVA------WSSDSRLLVSGSDDKTLK   94 (231)
Q Consensus        25 ~h~~~i~~~~~~~~---~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~~g~i~   94 (231)
                      +|...|.+++|+|+   +++|++++.||.|++|+..++. ....+.+|...+.++.      |+|+++.+++++.|+.|+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~  142 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK  142 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence            78899999999998   6999999999999999998877 7778888999999995      468999999999999999


Q ss_pred             EEeCCCce-eeeeecCCCc----ceEEEE----ECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcC--
Q psy4391          95 IWELSSGK-CLKTLKGHSN----YVFCCN----FNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR--  163 (231)
Q Consensus        95 ~~d~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--  163 (231)
                      +||+.+++ ....+..+..    .+.++.    |+|+++++++++.|+.|++||+++++.... ..+...+.+++|+|  
T Consensus       143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~  221 (357)
T 3i2n_A          143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKD  221 (357)
T ss_dssp             EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSS
T ss_pred             EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCC
Confidence            99999876 5666654433    677777    789999999999999999999999886444 56778999999999  


Q ss_pred             -CCCeEEEEecCCeEEEEeCCCCceeeeee----cCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCC
Q psy4391         164 -DGSLIVSSSYDGLCRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDSY  226 (231)
Q Consensus       164 -~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----~~~~~~i~~~~~s~~g~-~l~~~s~d~~v~vwd~~  226 (231)
                       ++.++++++.||.|++||+++++....+.    ..+...+..++|+|+++ +|++++.||.|++||..
T Consensus       222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred             CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence             99999999999999999998766544432    25667899999999998 89999999999999963

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=7.8e-32  Score=212.23  Aligned_cols=198  Identities=25%  Similarity=0.456  Sum_probs=171.5

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCcEEEeecCCCc----EEEEEecccccEEEEEECC-CCCEEEEecCCCcEEEEeCCCc-
Q psy4391          29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELSSG-  101 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~-  101 (231)
                      ....++++|+...++ +++.+|.|++|+.....    ....+.+|...|.+++|+| ++++|++++.||.|++||+.++ 
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            345688888776544 57889999999985532    2334667889999999999 8999999999999999999987 


Q ss_pred             ------eeeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeeec--cCCCCCeEEEEEcCCCCeEEEEe
Q psy4391         102 ------KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus       102 ------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                            +....+.+|...+.+++|+|++ +++++++.|+.|++||+++++.+..+  ..|...|.+++|+|++++|++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                  5667788899999999999998 69999999999999999999988888  78999999999999999999999


Q ss_pred             cCCeEEEEeCCCCceeeee-ecCCCCCeEEEEECCCCCEEEEE---eCCCeEEEEeCC
Q psy4391         173 YDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDSY  226 (231)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~-~~~~~~~i~~~~~s~~g~~l~~~---s~d~~v~vwd~~  226 (231)
                      .||.|++||+++++.+..+ ..+....+..++|+|+|++|+++   +.|+.|++||..
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~  253 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK  253 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc
Confidence            9999999999999888777 34444447889999999999999   789999999974

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-32  Score=221.38  Aligned_cols=204  Identities=16%  Similarity=0.105  Sum_probs=168.0

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc-EEEEEecccccEEEE--EECCCC-CEEEEecCCCcEEEE
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDV--AWSSDS-RLLVSGSDDKTLKIW   96 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~~g~i~~~   96 (231)
                      .++.+|...|++++|+++ ..|++|+.||+|++||+.++. ....+.+|...|.++  .|+|++ .+|++++.|++|++|
T Consensus       260 ~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW  338 (524)
T 2j04_B          260 LTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF  338 (524)
T ss_dssp             EEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred             EEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence            356789999999999986 489999999999999998653 345577888999999  578887 889999999999999


Q ss_pred             eCCCceeeeeecCCC--cceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC
Q psy4391          97 ELSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus        97 d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      |+++++....+.+|.  ..+.+++|+|++..+++++.|+.|++||++++.++..+..|.+.|.+++|+|++++|++|+.|
T Consensus       339 D~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D  418 (524)
T 2j04_B          339 NPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD  418 (524)
T ss_dssp             CGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT
T ss_pred             ECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECC
Confidence            999877665555443  246789999999999999999999999999998878888899999999999999999999999


Q ss_pred             CeEEEEeCCCCc--------------eeeee-----------------------------ecCCCCCeEEEEECCCCC--
Q psy4391         175 GLCRIWDTASGQ--------------CLKTL-----------------------------IDDDNPPVSFVKFSPNGK--  209 (231)
Q Consensus       175 g~i~v~d~~~~~--------------~~~~~-----------------------------~~~~~~~i~~~~~s~~g~--  209 (231)
                      |.|++||+....              .+..+                             ...+...|.+++|+|+++  
T Consensus       419 gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~  498 (524)
T 2j04_B          419 GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGG  498 (524)
T ss_dssp             TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTT
T ss_pred             CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCcc
Confidence            999999864210              00000                             111334678899999964  


Q ss_pred             -EEEEEeCCCeEEEEeC
Q psy4391         210 -YILAATLDNTLKLWDS  225 (231)
Q Consensus       210 -~l~~~s~d~~v~vwd~  225 (231)
                       ++|+|+.||.|+||+.
T Consensus       499 ~~lAsg~~~g~vrlw~l  515 (524)
T 2j04_B          499 KCYAFSNSAGLLTLEYL  515 (524)
T ss_dssp             TEEEEECTTSEEEEEEC
T ss_pred             HHHHhhccCceEEEEEc
Confidence             9999999999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.5e-30  Score=208.36  Aligned_cols=202  Identities=28%  Similarity=0.606  Sum_probs=176.7

Q ss_pred             eEEeecccccce-EEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          19 LKFTLAGHTKAV-SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        19 ~~~~~~~h~~~i-~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      ....+.+|...+ .++.+  ++++|++|+.||.|++||..+++....+.+|...|.+++|+|++ .+++++.||.|++||
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence            345677898875 66555  57899999999999999999999999999999999999999987 899999999999999


Q ss_pred             CCCceeeeeecCCCcceEEEEEC--CCCCEEEEeecCCcEEEEECCCCce-----------------------eeeccCC
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFN--PQSNLIVSGSFDESVRIWDVRTGKC-----------------------LKTLPAH  152 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~v~d~~~~~~-----------------------~~~~~~~  152 (231)
                      +++++....+..|...+.+++++  +++.++++++.|+.|++||++++..                       +..+..|
T Consensus       190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (464)
T 3v7d_B          190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  269 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred             CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence            99999999999999999999988  5789999999999999999987653                       3345567


Q ss_pred             CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       153 ~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ...+.++  ++++.++++++.||.|++||+.+++.+..+. .+...+..++|+|++++|++++.||.|++||..
T Consensus       270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~  340 (464)
T 3v7d_B          270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLE  340 (464)
T ss_dssp             SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            7777765  6788999999999999999999998877664 355679999999999999999999999999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-30  Score=195.85  Aligned_cols=197  Identities=27%  Similarity=0.441  Sum_probs=173.7

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECC-CCCEEEEecCCCcEEEEeCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~d~~   99 (231)
                      ..+.+|...|.++.|  +++++++++.||.|++|+  .+.....+..|...+..+.|.| +++.+++++.++.|++||. 
T Consensus        98 ~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~-  172 (313)
T 3odt_A           98 YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN-  172 (313)
T ss_dssp             CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET-
T ss_pred             cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec-
Confidence            445689999999999  678999999999999999  5667778888889999999988 8999999999999999994 


Q ss_pred             CceeeeeecC-CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         100 SGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       100 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                       .+....+.. +...+.+++|+|++. +++++.|+.|++||+++++.+..+..|..++.+++|+|++ .+++++.||.|+
T Consensus       173 -~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~  249 (313)
T 3odt_A          173 -DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVR  249 (313)
T ss_dssp             -TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEE
T ss_pred             -CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEE
Confidence             455556665 788899999999988 9999999999999999999999999999999999999999 688999999999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +||+.+++.+..+.. +..++..++|+|+++ +++++.||.|++||..+
T Consensus       250 iwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          250 IWSKENGSLKQVITL-PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             EECTTTCCEEEEEEC-SSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred             EEECCCCceeEEEec-cCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence            999999988777654 455799999999998 56788999999999743

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.9e-30  Score=229.35  Aligned_cols=206  Identities=30%  Similarity=0.529  Sum_probs=184.8

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECC--CCCEEEEecCCCcEEEE
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS--DSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~g~i~~~   96 (231)
                      ...++.+|...|.+++|+|++++|++++.||.|++||..+++....+.+|...+.+++|+|  ++..+++++.|+.|++|
T Consensus       649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw  728 (1249)
T 3sfz_A          649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW  728 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence            3456678999999999999999999999999999999999999999999999999999999  55688999999999999


Q ss_pred             eCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec---------------------------
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL---------------------------  149 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---------------------------  149 (231)
                      |+.+++....+.+|...+.+++|+|+++.+++++.||.|++||+++++....+                           
T Consensus       729 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  808 (1249)
T 3sfz_A          729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA  808 (1249)
T ss_dssp             ETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred             ECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence            99999999999999999999999999999999999999999999776433221                           


Q ss_pred             ----------------------------cCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEE
Q psy4391         150 ----------------------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF  201 (231)
Q Consensus       150 ----------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~  201 (231)
                                                  ..|...+.+++|+|++.++++++.||.|++||+.+++.+..+. .+...|..
T Consensus       809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~  887 (1249)
T 3sfz_A          809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHG  887 (1249)
T ss_dssp             TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEE
T ss_pred             CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEE
Confidence                                        1456778899999999999999999999999999988776654 45667999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         202 VKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       202 ~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ++|+|+|++|++++.||.|++||.
T Consensus       888 v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          888 VMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEH
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEc
Confidence            999999999999999999999995

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-31  Score=210.24  Aligned_cols=198  Identities=18%  Similarity=0.172  Sum_probs=169.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCc---EEEEEecc------------------------------------
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGH------------------------------------   68 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~---~~~~~~~~------------------------------------   68 (231)
                      .++.+++|+++|++|+++ .++.|++|+..+++   ....+..+                                    
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478899999999976665 57899999998887   44443321                                    


Q ss_pred             ------------------cccEEEEEECCCCCEE-EEecCCCcEEEEeCC--Cceeeeeec--CCCcceEEEEECCCCCE
Q psy4391          69 ------------------KLGISDVAWSSDSRLL-VSGSDDKTLKIWELS--SGKCLKTLK--GHSNYVFCCNFNPQSNL  125 (231)
Q Consensus        69 ------------------~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~  125 (231)
                                        ...|.+++|+|++++| ++++.||.|++||+.  +++....+.  .+...+.+++|+|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                              2259999999999996 889999999999999  777777765  45678999999999999


Q ss_pred             EEEeecCCcEEEEECCCCceee----eccCCCCCeEEEEEcCC---CCeEEEEecCCeEEEEeCCCCceeeeeecCCCCC
Q psy4391         126 IVSGSFDESVRIWDVRTGKCLK----TLPAHSDPVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP  198 (231)
Q Consensus       126 l~~~~~d~~i~v~d~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~  198 (231)
                      |++++.++.+++|++.++....    .+..|...|.+++|+|+   +++|++++.|+.|++||+.+++.+..+...+...
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            9999999999999998877544    66778899999999999   9999999999999999999988877766567778


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         199 VSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       199 i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      |..++|+ +|++|++++.|+.|++||...
T Consensus       244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             EEEEEEC-STTEEEEEESSSEEEEEETTT
T ss_pred             eEEEEEC-CCCEEEEEeCCCeEEEEECCC
Confidence            9999999 999999999999999999743

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.2e-31  Score=203.05  Aligned_cols=205  Identities=23%  Similarity=0.310  Sum_probs=166.3

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEE--CCCCCEEEEecCCCcEEEE
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW--SSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~~g~i~~~   96 (231)
                      +...+.+|...|.+++|+|++++|++++.||.|++|+..++.... +..|...+.+++|  +|+++++++++.|+.|++|
T Consensus        78 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw  156 (368)
T 3mmy_A           78 IPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW  156 (368)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             eEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence            335667899999999999999999999999999999998877654 5568889999999  8999999999999999999


Q ss_pred             eCCCceeeeeecCCC-----------------------------------------cceEEEEECCCCC----EEEEeec
Q psy4391          97 ELSSGKCLKTLKGHS-----------------------------------------NYVFCCNFNPQSN----LIVSGSF  131 (231)
Q Consensus        97 d~~~~~~~~~~~~~~-----------------------------------------~~v~~~~~~~~~~----~l~~~~~  131 (231)
                      |+.+++.+..+..+.                                         ....++.+.++..    .+++++.
T Consensus       157 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          157 DTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             CSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred             ECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence            998876655544322                                         1122233333322    2999999


Q ss_pred             CCcEEEEECCCC---ceeeeccCCCC------------CeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCC
Q psy4391         132 DESVRIWDVRTG---KCLKTLPAHSD------------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN  196 (231)
Q Consensus       132 d~~i~v~d~~~~---~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~  196 (231)
                      |+.|++||++..   ..+..+..|..            +|.+++|+|++++|++++.||.|++||+.+++.+..+. .+.
T Consensus       237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~  315 (368)
T 3mmy_A          237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QLD  315 (368)
T ss_dssp             TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCS
T ss_pred             CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CCC
Confidence            999999999887   44555566654            79999999999999999999999999999998877665 445


Q ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         197 PPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       197 ~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .++..++|+|+|++|++++.|+..+.|+.
T Consensus       316 ~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          316 QPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             CCceEEEECCCCCeEEEEecccccccccc
Confidence            68999999999999999999886666654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.4e-30  Score=200.31  Aligned_cols=200  Identities=15%  Similarity=0.155  Sum_probs=171.4

Q ss_pred             ecccccceEEEEECCCCC-EEEEEeCCCcEEEeec-CCCcEEEEEec--ccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          23 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGA-YDGKFEKTISG--HKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      +.+|...|.+++|+|+++ +|++++.||.|++|+. .++.. ..+.+  |...|.+++|+| ++.+++++.|+.|++||+
T Consensus        52 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~  129 (342)
T 1yfq_A           52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDP  129 (342)
T ss_dssp             EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECH
T ss_pred             eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcc
Confidence            347899999999999999 9999999999999999 77654 66777  889999999999 999999999999999999


Q ss_pred             CC---------ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCC-Cce--eeeccCCCCCeEEEEEcC-CC
Q psy4391          99 SS---------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-GKC--LKTLPAHSDPVSAVHFNR-DG  165 (231)
Q Consensus        99 ~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~-~~  165 (231)
                      .+         ++.+..+. +...+.+++|+|++  +++++.++.|++||+++ +..  ......+...+.+++|+| ++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~  206 (342)
T 1yfq_A          130 RNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             HHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             cccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC
Confidence            87         66666666 77889999999987  99999999999999998 543  234456778999999999 99


Q ss_pred             CeEEEEecCCeEEEEeCCCC------ceeeeeecCC--------CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         166 SLIVSSSYDGLCRIWDTASG------QCLKTLIDDD--------NPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~------~~~~~~~~~~--------~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +++++++.||.+++|++...      +....+..+.        ...+..++|+|++++|++++.||.|++||...
T Consensus       207 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence            99999999999999999876      5444444332        23799999999999999999999999999743

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-31  Score=202.12  Aligned_cols=194  Identities=11%  Similarity=0.083  Sum_probs=157.7

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecC---------CCcEEEEEe-cccccEEEEEECC--CCCEEEEecCCCcEEE
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAY---------DGKFEKTIS-GHKLGISDVAWSS--DSRLLVSGSDDKTLKI   95 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~~g~i~~   95 (231)
                      ..|.++.|+|+   +++++.|+.+++|+..         ++....... .|...|.+++|+|  +++++++++.||.|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            45667778877   8899999999999764         333333333 4557899999999  9999999999999999


Q ss_pred             EeCCCceeeeeecC-CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCcee-eeccC-CCCCeEEEEEcCCCCeEEEEe
Q psy4391          96 WELSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL-KTLPA-HSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus        96 ~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      ||+++++....... +...+.+++|+|++.++++|+.|+.|++||+++++.+ ..+.. |.++|.+++|+|++.+|++++
T Consensus       154 wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          154 QSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC  233 (343)
T ss_dssp             EESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence            99999887665533 3457899999999999999999999999999999877 67777 899999999999999999999


Q ss_pred             cCCeEEEEeCCCCceeeeeecC--CCCCe--EEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         173 YDGLCRIWDTASGQCLKTLIDD--DNPPV--SFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~~--~~~~i--~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                       ++.|++||+++++....+...  +...+  ..++|+|+|++|++++. |+.|++|+.
T Consensus       234 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          234 -DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             -SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             -CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence             559999999988765443321  11222  35999999999999998 999999986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.7e-30  Score=214.20  Aligned_cols=198  Identities=16%  Similarity=0.268  Sum_probs=178.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC----cEEEEEeccccc-EEEEEECC--CCCEEEEecCCCcEEEEe
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLG-ISDVAWSS--DSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~----~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~~g~i~~~d   97 (231)
                      .|.+.|.+++|+|+|++|++++ ++.+++|+..++    +....+.+|... |.+++|+|  ++++|++++.||.|++||
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~   94 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG   94 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence            5788999999999999999988 889999999988    788899999999 99999999  999999999999999999


Q ss_pred             CCCc--------eeeeeecCCCcceEEEEECCCCCEEEEeecC----CcEEEEECCCCceeeeccCCCCCeEEEEEcCCC
Q psy4391          98 LSSG--------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG  165 (231)
Q Consensus        98 ~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~  165 (231)
                      +.++        +....+..+...+.+++|+|+++++++++.+    +.|++||  .++.+..+..|...|.+++|+|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~  172 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR  172 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSS
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCC
Confidence            9754        5666777888999999999999999999987    6788888  567788888999999999999999


Q ss_pred             C-eEEEEecCCeEEEEeCCCCceeeeeecCCCC---CeEEEEECCC-CCEEEEEeCCCeEEEEeCC
Q psy4391         166 S-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFSPN-GKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       166 ~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~---~i~~~~~s~~-g~~l~~~s~d~~v~vwd~~  226 (231)
                      + .+++++.|+.|++||+.+++.+..+.. +..   .+..++|+|+ +++|++++.||.|++||..
T Consensus       173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~  237 (615)
T 1pgu_A          173 PMRSMTVGDDGSVVFYQGPPFKFSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  237 (615)
T ss_dssp             SCEEEEEETTTEEEEEETTTBEEEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             CcEEEEEeCCCcEEEEeCCCcceeeeecc-cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence            8 799999999999999999887776653 444   7999999999 9999999999999999964

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.1e-30  Score=208.93  Aligned_cols=191  Identities=13%  Similarity=0.168  Sum_probs=160.6

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccc-----cEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-----GISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      .|...|.+++|||+|++||+++.||.+++|+...  ....+. |..     .+.+++|+|+|++|++|+.||.|++||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            4578899999999999999999999999999543  445555 544     49999999999999999999999999999


Q ss_pred             Cce-------eeeee----cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCcee---eec-cCCCCCeEEEEEcCC
Q psy4391         100 SGK-------CLKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL---KTL-PAHSDPVSAVHFNRD  164 (231)
Q Consensus       100 ~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~-~~~~~~v~~~~~~~~  164 (231)
                      ++.       .+..+    .+|.+.|.+++|+|+|  +++++.|+.+++||+..+...   ..+ ..|...|.+++|+  
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--  235 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--  235 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence            874       24555    5667899999999999  888999999999999887632   344 4677899999999  


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEE--CCCCCEEEEEeCCCeEEEEeC
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~--s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ++.+|+++ ++.|++||+.+++...... .+...+..++|  +|+++.++++..||. ++|..
T Consensus       236 g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          236 DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence            68888887 6999999999877533322 56778899999  999999999999999 99985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=2.8e-31  Score=208.69  Aligned_cols=201  Identities=13%  Similarity=0.122  Sum_probs=147.9

Q ss_pred             eecccccceEEEEECC--------CCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCC-EEEEecCCCc
Q psy4391          22 TLAGHTKAVSSVKFSP--------NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR-LLVSGSDDKT   92 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~--------~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~   92 (231)
                      .+.+|.+.|.+++|+|        ++++||+|+.|++|++||+.++.....+..|...+.+++|+|++. +|++++.|+.
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~  210 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGN  210 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCE
Confidence            4678999999999997        889999999999999999988877777888888999999999875 7899999999


Q ss_pred             EEEEeCCCceeeeee-------------------------cCCCcceEEEEEC-CCCCEEEEeecCCcEEEEECCCCcee
Q psy4391          93 LKIWELSSGKCLKTL-------------------------KGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVRTGKCL  146 (231)
Q Consensus        93 i~~~d~~~~~~~~~~-------------------------~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~~~~  146 (231)
                      |++||+.+++.....                         .++...+.++.|. |+++.+++++.|+.+++||+..++..
T Consensus       211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~  290 (393)
T 4gq1_A          211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY  290 (393)
T ss_dssp             EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred             EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC
Confidence            999999876532211                         2345556677775 89999999999999999999887655


Q ss_pred             eeccCCCCCeEEE------------------EEcC--CCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECC
Q psy4391         147 KTLPAHSDPVSAV------------------HFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP  206 (231)
Q Consensus       147 ~~~~~~~~~v~~~------------------~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~  206 (231)
                      ..+..+...+..+                  .++|  ++.++++|+.||.|++||+.+++.......+ ..+|.+++|+|
T Consensus       291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~-~~~V~svafsp  369 (393)
T 4gq1_A          291 NEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL-GMPIVDFCWHQ  369 (393)
T ss_dssp             -------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC-SSCEEEEEECT
T ss_pred             ceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC-CCcEEEEEEcC
Confidence            5544443332222                  2333  3346677889999999999998877665544 45799999999


Q ss_pred             CCCEEEEEeCCCeEEEEe
Q psy4391         207 NGKYILAATLDNTLKLWD  224 (231)
Q Consensus       207 ~g~~l~~~s~d~~v~vwd  224 (231)
                      ||++||+++.+| +.+|.
T Consensus       370 dG~~LA~as~~G-v~lvr  386 (393)
T 4gq1_A          370 DGSHLAIATEGS-VLLTR  386 (393)
T ss_dssp             TSSEEEEEESSE-EEEEE
T ss_pred             CCCEEEEEeCCC-eEEEE
Confidence            999999998665 55554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.3e-30  Score=208.57  Aligned_cols=202  Identities=11%  Similarity=0.108  Sum_probs=158.3

Q ss_pred             eeEEeecccccceEEEEECCCCCEEEEEeCCCcEE-----------------E----------eecCCCcEEEEEe-ccc
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIK-----------------I----------WGAYDGKFEKTIS-GHK   69 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~-----------------i----------~~~~~~~~~~~~~-~~~   69 (231)
                      .+....+.-...|.+++|+|||+++|+++.|++|+                 +          |+..++.....+. .+.
T Consensus         6 ~~~~~~~~~~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~   85 (588)
T 2j04_A            6 DLLVDRKEFEDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPV   85 (588)
T ss_dssp             CEEECSCCCSSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCS
T ss_pred             hhcccHhHhhccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCC
Confidence            35555666678899999999999999999999985                 1          1111111111111 345


Q ss_pred             ccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCc-----ceEEEEECCCCCEEEEeecCCcEEEEECCCCc
Q psy4391          70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSN-----YVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK  144 (231)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  144 (231)
                      ..|.+++|+|+|+.||+++.||.|++||.++  .+..+. |..     .+.+++|+|+|++|++|+.||+|++||+..+.
T Consensus        86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence            6799999999999999999999999999654  555555 544     49999999999999999999999999999875


Q ss_pred             e-------eeec----cCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCcee---eeeecCCCCCeEEEEECCCCCE
Q psy4391         145 C-------LKTL----PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL---KTLIDDDNPPVSFVKFSPNGKY  210 (231)
Q Consensus       145 ~-------~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~---~~~~~~~~~~i~~~~~s~~g~~  210 (231)
                      .       +..+    ..|...|.+++|+|+|  +++++.|+.+++||+.+++..   .++...+...|..++|+  |+.
T Consensus       163 l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~  238 (588)
T 2j04_A          163 ENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYK  238 (588)
T ss_dssp             TTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTE
T ss_pred             cccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCE
Confidence            3       4554    5677899999999999  888889999999999887732   33433455678999999  688


Q ss_pred             EEEEeCCCeEEEEeCCC
Q psy4391         211 ILAATLDNTLKLWDSYP  227 (231)
Q Consensus       211 l~~~s~d~~v~vwd~~~  227 (231)
                      ||+++ ++.|++||...
T Consensus       239 LASa~-~~tIkLWd~~~  254 (588)
T 2j04_A          239 VVLTC-PGYVHKIDLKN  254 (588)
T ss_dssp             EEEEC-SSEEEEEETTT
T ss_pred             EEEEe-CCeEEEEECCC
Confidence            88887 79999999643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=3e-29  Score=199.50  Aligned_cols=196  Identities=27%  Similarity=0.579  Sum_probs=174.7

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      ....+.+|...|.+++|  ++++|++|+.||.|++||..+++....+.+|...|.+++|++  ..+++++.||.|++||+
T Consensus       165 ~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  240 (435)
T 1p22_A          165 CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDM  240 (435)
T ss_dssp             EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEEC
T ss_pred             EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeC
Confidence            34556789999999999  788999999999999999999999999999999999999974  58999999999999999


Q ss_pred             CCceee---eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC
Q psy4391          99 SSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus        99 ~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                      .+++..   ..+.+|...+.++.+  +++++++++.|+.|++||+++++.+..+..|...+.++++  ++.++++|+.||
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg  316 (435)
T 1p22_A          241 ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN  316 (435)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             CCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC
Confidence            887654   566788889999888  7889999999999999999999999999999999999998  468999999999


Q ss_pred             eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .|++||+++++.+..+.. +...+.+++|  ++.+|++|+.||.|++||.
T Consensus       317 ~i~iwd~~~~~~~~~~~~-h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~  363 (435)
T 1p22_A          317 TIRLWDIECGACLRVLEG-HEELVRCIRF--DNKRIVSGAYDGKIKVWDL  363 (435)
T ss_dssp             CEEEEETTTCCEEEEECC-CSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred             eEEEEECCCCCEEEEEeC-CcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence            999999999988777653 5567888888  7899999999999999995

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-29  Score=195.36  Aligned_cols=194  Identities=15%  Similarity=0.060  Sum_probs=157.0

Q ss_pred             ccccceEEEEECC--CCCEEEEEeCCCcEEEeecCCCcEEEEEe-cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          25 GHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        25 ~h~~~i~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      +|.+.|.+++|+|  +++++++++.||.|++||..+++...... .+...+.+++|+|++.++++|+.||.|++||++++
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence            5678899999999  99999999999999999999888765553 34457999999999999999999999999999998


Q ss_pred             eee-eeecC-CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccC---CCCCe--EEEEEcCCCCeEEEEec-
Q psy4391         102 KCL-KTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA---HSDPV--SAVHFNRDGSLIVSSSY-  173 (231)
Q Consensus       102 ~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~v--~~~~~~~~~~~l~~~~~-  173 (231)
                      +.. ..+.. |...|.+++|+|++.+|++++ ++.|++||+++++.+..+..   +...+  .+++|+|++++|++++. 
T Consensus       203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~  281 (343)
T 3lrv_A          203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE  281 (343)
T ss_dssp             TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT
T ss_pred             CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCC
Confidence            876 67777 889999999999999999999 45999999998876555443   32333  36999999999999988 


Q ss_pred             CCeEEEEeCCCCceeeeeecCCCCCeEEEEECC---CCCEEEEEeCCCeEEEEe
Q psy4391         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP---NGKYILAATLDNTLKLWD  224 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~~s~d~~v~vwd  224 (231)
                      |+.+++|++.........     .++..++|++   +++.+++++.||.+.++-
T Consensus       282 d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          282 SNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             TTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             CCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEE
Confidence            999999998665432221     3456677888   888899999999888874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=8.8e-29  Score=197.26  Aligned_cols=200  Identities=30%  Similarity=0.600  Sum_probs=174.9

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      ...+.+|...|.++.|  +++++++|+.||.|++||..+++....+.+|...+.++.|  +++.+++++.|+.|++||+.
T Consensus       232 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~  307 (445)
T 2ovr_B          232 LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE  307 (445)
T ss_dssp             EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT
T ss_pred             EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC
Confidence            3456688899999999  6888999999999999999888888888888888999988  78899999999999999999


Q ss_pred             CceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccC---CCCCeEEEEEcCCCCeEEEEecCCe
Q psy4391         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGL  176 (231)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~  176 (231)
                      +++.+..+..|...+.++.+  +++++++++.||.|++||+++++.+..+..   |..+|.+++|+  ++++++++.||.
T Consensus       308 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~  383 (445)
T 2ovr_B          308 TGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT  383 (445)
T ss_dssp             TCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSE
T ss_pred             CCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCe
Confidence            99988888888888877766  467999999999999999999988888765   77899999995  589999999999


Q ss_pred             EEEEeCCCCceeeeee----cCCCCCeEEEEECCCCCEEEEEeCCCe----EEEEeCCC
Q psy4391         177 CRIWDTASGQCLKTLI----DDDNPPVSFVKFSPNGKYILAATLDNT----LKLWDSYP  227 (231)
Q Consensus       177 i~v~d~~~~~~~~~~~----~~~~~~i~~~~~s~~g~~l~~~s~d~~----v~vwd~~~  227 (231)
                      |++||+.+++.+..+.    ..+...+..++|+|+|.++++++.||.    |.|||..+
T Consensus       384 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          384 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            9999999998877763    245567999999999999999999997    99999743

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=9.6e-29  Score=197.03  Aligned_cols=196  Identities=35%  Similarity=0.718  Sum_probs=174.1

Q ss_pred             Eeecccccce-EEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          21 FTLAGHTKAV-SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        21 ~~~~~h~~~i-~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      ..+.+|.+.+ .+  ++++|++|++|+.||.|++|+..+++....+.+|...|.+++|+  ++.+++++.||.|++||+.
T Consensus       112 ~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          112 KVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             EEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             EEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence            4567898865 54  45568999999999999999999999999999999999999997  5689999999999999999


Q ss_pred             CceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEE
Q psy4391         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (231)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  179 (231)
                      +++....+..|...+.++.++  ++.+++++.|+.|++||+++++.+..+..|..++.++++  ++.++++++.||.|++
T Consensus       188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i  263 (445)
T 2ovr_B          188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV  263 (445)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred             cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence            999999999999999999885  568999999999999999999999999999999999998  7889999999999999


Q ss_pred             EeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ||+.+++.+..+. .+...+..++|  ++.++++++.||.|++||...
T Consensus       264 wd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~  308 (445)
T 2ovr_B          264 WDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET  308 (445)
T ss_dssp             EEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT
T ss_pred             EECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC
Confidence            9999988777665 34567888888  789999999999999999643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.8e-28  Score=194.93  Aligned_cols=192  Identities=27%  Similarity=0.564  Sum_probs=170.9

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      +|...|.++.+  +++++++|+.||.|++||..+++....+.+|...|.+++|  +++.+++++.||.|++||+.+++.+
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~  206 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML  206 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE
Confidence            56677888877  7899999999999999999999999999999999999998  7889999999999999999999999


Q ss_pred             eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCcee---eeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL---KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      ..+..|...+.++.+++  ..+++++.|+.|++||++++...   ..+..|...|.++++  +++++++++.||.|++||
T Consensus       207 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd  282 (435)
T 1p22_A          207 NTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN  282 (435)
T ss_dssp             EEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred             EEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence            99999999999999974  59999999999999999987755   566788899999998  688999999999999999


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      +.+++.+..+.. +...+.++++  +++++++|+.||.|++||...
T Consensus       283 ~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~  325 (435)
T 1p22_A          283 TSTCEFVRTLNG-HKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC  325 (435)
T ss_dssp             TTTCCEEEEEEC-CSSCEEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred             CCcCcEEEEEcC-CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCC
Confidence            999988777653 4567888888  578999999999999999743

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=3.3e-28  Score=188.73  Aligned_cols=197  Identities=16%  Similarity=0.221  Sum_probs=157.8

Q ss_pred             ceEEEEECCCCCEE-EEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCC--------------------------
Q psy4391          29 AVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--------------------------   81 (231)
Q Consensus        29 ~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------------   81 (231)
                      .+..+.+.++++.+ ++++.|+.|++||..+++....+. +...+.++.|+++.                          
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~  138 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR  138 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc
Confidence            57788899988877 457778999999999888777665 34567777776542                          


Q ss_pred             ---------CEEEE--ecCCCcEEEEeCCCce----------------eeeeecCCCcceEEEEECCCCCEEEEeecCCc
Q psy4391          82 ---------RLLVS--GSDDKTLKIWELSSGK----------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES  134 (231)
Q Consensus        82 ---------~~l~~--~~~~g~i~~~d~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  134 (231)
                               ..+++  ++.+|.|++||+.+++                ....+.+|...|.+++|+|++++|++++.|++
T Consensus       139 ~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~  218 (355)
T 3vu4_A          139 FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT  218 (355)
T ss_dssp             EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred             CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence                     23333  5788999999998754                16778899999999999999999999999998


Q ss_pred             -EEEEECCCCceeeecc-C-CCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeee---------------------
Q psy4391         135 -VRIWDVRTGKCLKTLP-A-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT---------------------  190 (231)
Q Consensus       135 -i~v~d~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~---------------------  190 (231)
                       |++||+++++.+..+. . |...|.+++|+|++++|++++.|+.|++||+........                     
T Consensus       219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (355)
T 3vu4_A          219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF  298 (355)
T ss_dssp             EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred             EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence             9999999999988887 4 899999999999999999999999999999976532110                     


Q ss_pred             -eecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         191 -LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       191 -~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                       +......+...++|+++|++|++++.||.+++|+..
T Consensus       299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          299 KLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             ECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             EeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence             011111223568999999999999999999999863

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.8e-28  Score=207.63  Aligned_cols=197  Identities=12%  Similarity=0.207  Sum_probs=164.3

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      .|...|.+++|+| |++|++++.|+.|++||+.+++....+. +...|.+++|+|+++++++++.||.|++||+++++..
T Consensus        56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~  133 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS  133 (902)
T ss_dssp             SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence            4778999999999 8899999999999999999888877775 5578999999999999999999999999999987653


Q ss_pred             -----------eeecCCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCceeeeccCC------------------CC
Q psy4391         105 -----------KTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAH------------------SD  154 (231)
Q Consensus       105 -----------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------------------~~  154 (231)
                                 ....+|...|.+++|+|+ +..+++|+.|+.| +||+++++.+..+..|                  ..
T Consensus       134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~  212 (902)
T 2oaj_A          134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP  212 (902)
T ss_dssp             EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred             cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence                       234567888999999996 5789999999999 9999999887776544                  46


Q ss_pred             CeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeec-----C------------CCCCeEEEEEC----CCC-CEEE
Q psy4391         155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-----D------------DNPPVSFVKFS----PNG-KYIL  212 (231)
Q Consensus       155 ~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-----~------------~~~~i~~~~~s----~~g-~~l~  212 (231)
                      .|.+++|+|+|++|++++.||.|++||+++++.+.....     +            +..+|..++|+    |++ .+|+
T Consensus       213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~  292 (902)
T 2oaj_A          213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI  292 (902)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence            799999999999999999999999999999876543110     1            23368999994    554 5677


Q ss_pred             EEeCC-----CeEEEEe
Q psy4391         213 AATLD-----NTLKLWD  224 (231)
Q Consensus       213 ~~s~d-----~~v~vwd  224 (231)
                      +|+.|     +.+.+|+
T Consensus       293 sg~~~~~~~~~~v~~~~  309 (902)
T 2oaj_A          293 SHKSISRGDNQSLTMID  309 (902)
T ss_dssp             EEECSTTSSCCCEEEEE
T ss_pred             eCCCCCCCCCceEEEEe
Confidence            77665     3788888

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=6.9e-28  Score=184.94  Aligned_cols=174  Identities=22%  Similarity=0.381  Sum_probs=149.3

Q ss_pred             eeEEeecccccceEEEEECC--CCCEEEEEeCCCcEEEeecCCC---------cEEEEEecccccEEEEEECCC--CCEE
Q psy4391          18 VLKFTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDG---------KFEKTISGHKLGISDVAWSSD--SRLL   84 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l   84 (231)
                      .....+.+|...|.+++|+|  ++++|++++.||.|++|+..++         +....+..|...+.+++|+|+  ++++
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  127 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL  127 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred             eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence            34556678999999999999  6999999999999999999776         456677788899999999999  9999


Q ss_pred             EEecCCCcEEEEeCCCcee------------------------------------------------------------e
Q psy4391          85 VSGSDDKTLKIWELSSGKC------------------------------------------------------------L  104 (231)
Q Consensus        85 ~~~~~~g~i~~~d~~~~~~------------------------------------------------------------~  104 (231)
                      ++++.||.|++||+.+++.                                                            .
T Consensus       128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  207 (351)
T 3f3f_A          128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA  207 (351)
T ss_dssp             EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence            9999999999999865431                                                            2


Q ss_pred             eeecCCCcceEEEEECCCC----CEEEEeecCCcEEEEECCCC-------------------------------------
Q psy4391         105 KTLKGHSNYVFCCNFNPQS----NLIVSGSFDESVRIWDVRTG-------------------------------------  143 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~-------------------------------------  143 (231)
                      ..+.+|...+.+++|+|++    +++++++.|+.|++||++.+                                     
T Consensus       208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (351)
T 3f3f_A          208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK  287 (351)
T ss_dssp             EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred             eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence            3344677889999999998    89999999999999999865                                     


Q ss_pred             ---------ceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeee
Q psy4391         144 ---------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL  191 (231)
Q Consensus       144 ---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  191 (231)
                               +.+..+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+
T Consensus       288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence                     455667788999999999999999999999999999999987655443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=9.3e-29  Score=194.31  Aligned_cols=196  Identities=18%  Similarity=0.237  Sum_probs=142.4

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEeecCCCcEEE-----EEecccccEEEEEECC--------CCCEEEEecCCCcEEEEeC
Q psy4391          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-----TISGHKLGISDVAWSS--------DSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~-----~~~~~~~~v~~~~~~~--------~~~~l~~~~~~g~i~~~d~   98 (231)
                      ...+.+++.+|++++.|++|++|+..++....     .+.+|...|.+++|+|        ++++|++++.|++|++||+
T Consensus        94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~  173 (393)
T 4gq1_A           94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL  173 (393)
T ss_dssp             ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred             eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence            33444566789999999999999998775433     2457889999999997        7889999999999999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeeec-------------------------cCC
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTL-------------------------PAH  152 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~-------------------------~~~  152 (231)
                      .++.....+..|...+.+++|+|++ .+|++++.|+.|++||+++++.....                         ..|
T Consensus       174 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  253 (393)
T 4gq1_A          174 TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI  253 (393)
T ss_dssp             ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC
T ss_pred             CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc
Confidence            8887777777788899999999987 48999999999999999887543221                         235


Q ss_pred             CCCeEEEEEc-CCCCeEEEEecCCeEEEEeCCCCceeeeeecCC------------------CCCeEEEEECC--CCCEE
Q psy4391         153 SDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD------------------NPPVSFVKFSP--NGKYI  211 (231)
Q Consensus       153 ~~~v~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~------------------~~~i~~~~~s~--~g~~l  211 (231)
                      ...+.++.|. |+++.+++++.|+.+++||+..++....+....                  ...+. ..++|  ++.++
T Consensus       254 ~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  332 (393)
T 4gq1_A          254 ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG-ACPHPRYMDYFA  332 (393)
T ss_dssp             SSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC-CEECSSCTTEEE
T ss_pred             cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee-EEEccCCCCEEE
Confidence            5667788886 799999999999999999998765443332110                  11111 22333  44567


Q ss_pred             EEEeCCCeEEEEeCCCC
Q psy4391         212 LAATLDNTLKLWDSYPC  228 (231)
Q Consensus       212 ~~~s~d~~v~vwd~~~~  228 (231)
                      ++|+.||.|++||..+.
T Consensus       333 ~sgs~Dg~V~lwd~~~~  349 (393)
T 4gq1_A          333 TAHSQHGLIQLINTYEK  349 (393)
T ss_dssp             EEETTTTEEEEEETTCT
T ss_pred             EEECCCCEEEEEECCCC
Confidence            78889999999997654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1.1e-27  Score=186.35  Aligned_cols=160  Identities=18%  Similarity=0.229  Sum_probs=135.7

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEE--EecccccEEEEEECCCCCEEEEecCCC----cEEEEeC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSRLLVSGSDDK----TLKIWEL   98 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~g----~i~~~d~   98 (231)
                      .|...|.+++|+|+|+++++++.+ .+.+|+..++.....  ...|...+.+++|+|+++.+++++.++    .+++|++
T Consensus       174 ~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~  252 (365)
T 4h5i_A          174 ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI  252 (365)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE
T ss_pred             CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc
Confidence            477889999999999999998755 556666656655433  345677899999999999999998877    5788888


Q ss_pred             CCcee----eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec-cCCCCCeEEEEEcCCCCeEEEEec
Q psy4391          99 SSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus        99 ~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                      .....    ...+..|...|.+++|+|+|++||+|+.|+.|++||+++++.+..+ .+|..+|++++|+|||++|++++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~  332 (365)
T 4h5i_A          253 KSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSA  332 (365)
T ss_dssp             ETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred             ccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence            76542    3456678888999999999999999999999999999999988874 789999999999999999999999


Q ss_pred             CCeEEEEeCCCC
Q psy4391         174 DGLCRIWDTASG  185 (231)
Q Consensus       174 dg~i~v~d~~~~  185 (231)
                      |++|+|||+..+
T Consensus       333 D~tvrvw~ip~~  344 (365)
T 4h5i_A          333 ANTIHIIKLPLN  344 (365)
T ss_dssp             TSEEEEEECCTT
T ss_pred             CCeEEEEEcCCC
Confidence            999999999754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=1.2e-26  Score=183.67  Aligned_cols=194  Identities=25%  Similarity=0.446  Sum_probs=162.1

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy4391          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~  107 (231)
                      +..++|+++ +.|++|. |++|++||..+++....+.  +|...|.+++|+|+|++|++|+.||.|++||+++++.++.+
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~  185 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  185 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence            567999975 5777765 9999999999998777665  56677999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc-eeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCc
Q psy4391         108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  186 (231)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  186 (231)
                      .+|...+.++.++  +.++++|+.|+.+++||.+... .+..+..|...+..+.++|+++++++++.|+.+++||..+++
T Consensus       186 ~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~  263 (420)
T 4gga_A          186 TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  263 (420)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred             eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence            9999988887764  6799999999999999988654 456678899999999999999999999999999999998765


Q ss_pred             eee---eeecCCCCCeEEEEECCCCC-EEEE--EeCCCeEEEEeCCC
Q psy4391         187 CLK---TLIDDDNPPVSFVKFSPNGK-YILA--ATLDNTLKLWDSYP  227 (231)
Q Consensus       187 ~~~---~~~~~~~~~i~~~~~s~~g~-~l~~--~s~d~~v~vwd~~~  227 (231)
                      ...   .....+...|..++|+|++. .+++  |+.|+.|++||...
T Consensus       264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t  310 (420)
T 4gga_A          264 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  310 (420)
T ss_dssp             SCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred             ccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence            321   22334566799999999775 4444  35799999999743

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=4.4e-26  Score=178.46  Aligned_cols=200  Identities=17%  Similarity=0.199  Sum_probs=166.0

Q ss_pred             EeecccccceEEEEECCCCCEE-EEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEeC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWEL   98 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~   98 (231)
                      ..+..| ..+.+++|+|+++++ ++++.++.|++||..+++....+..+. .+..++|+|++++++ ++..++.|++||+
T Consensus        26 ~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~  103 (391)
T 1l0q_A           26 ATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (391)
T ss_dssp             EEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             EEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEEC
Confidence            344445 458999999999977 566789999999999988887777554 899999999999875 4556799999999


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEE-EEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeE-EEEecCCe
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSSYDGL  176 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~  176 (231)
                      .+++....+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++.+..+..+ ..+..++|+|+++.+ ++++.++.
T Consensus       104 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~  181 (391)
T 1l0q_A          104 TSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMS  181 (391)
T ss_dssp             TTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCE
Confidence            999887777654 457899999999977 67788999999999999887777665 456899999999987 56778899


Q ss_pred             EEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe---CCCeEEEEeCC
Q psy4391         177 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT---LDNTLKLWDSY  226 (231)
Q Consensus       177 i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s---~d~~v~vwd~~  226 (231)
                      |++||+.+++....+..  ...+..++|+|+|++|++++   .++.|++||..
T Consensus       182 v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          182 ISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             EEEEETTTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             EEEEECCCCeEEEEEec--CCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            99999999887666543  34578899999999999988   68999999964

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2e-27  Score=179.64  Aligned_cols=162  Identities=17%  Similarity=0.196  Sum_probs=128.4

Q ss_pred             eEEeecccccceEEEEECC---CCCEEEEEeCCCcEEEeecCCCcEEEEEeccc---ccEEEEEECCCCCEE--------
Q psy4391          19 LKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHK---LGISDVAWSSDSRLL--------   84 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~---~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l--------   84 (231)
                      ...++.+|...++.++|++   ++++|++++.|++|++||..+++....+.++.   ..+..++|+|+|+++        
T Consensus       170 ~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~  249 (356)
T 2w18_A          170 GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA  249 (356)
T ss_dssp             EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----
T ss_pred             eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC
Confidence            4445556777777778887   66889999999999999999999999887643   356777999999876        


Q ss_pred             ----EEecCCCcEEEEeCCCceeeeee-----cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCC
Q psy4391          85 ----VSGSDDKTLKIWELSSGKCLKTL-----KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP  155 (231)
Q Consensus        85 ----~~~~~~g~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  155 (231)
                          ++|+.|+++++||..+++.+..+     .+|...+.+..+  ++.++++++.|++|++||+++++++..+..|...
T Consensus       250 ~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~  327 (356)
T 2w18_A          250 KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQ  327 (356)
T ss_dssp             --------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--C
T ss_pred             cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCC
Confidence                56778999999999998876554     245444443333  3778999999999999999999999999888765


Q ss_pred             eE-EEEEcCCCCeEEEEecCCeEEEEeC
Q psy4391         156 VS-AVHFNRDGSLIVSSSYDGLCRIWDT  182 (231)
Q Consensus       156 v~-~~~~~~~~~~l~~~~~dg~i~v~d~  182 (231)
                      +. .++|+|||++|++|+.|++|++||+
T Consensus       328 vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            54 6899999999999999999999985

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=2.1e-25  Score=174.64  Aligned_cols=194  Identities=18%  Similarity=0.245  Sum_probs=161.9

Q ss_pred             cceEEEEECCCCCEEEE-EeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCceeee
Q psy4391          28 KAVSSVKFSPNGEWLAS-SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      ..+.+++|+|++++|++ +..++.|++||..+++....+..+ ..+..++|+|+++.+ ++++.++.|++||+.+++...
T Consensus        74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            38999999999998765 456799999999988877776654 468999999999977 688889999999999998888


Q ss_pred             eecCCCcceEEEEECCCCCEE-EEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe---cCCeEEEEe
Q psy4391         106 TLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS---YDGLCRIWD  181 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~v~d  181 (231)
                      .+..+ ..+..+.|+|+++.+ ++++.++.|++||+++++....+.. ...+.+++|+|+++++++++   .++.|++||
T Consensus       153 ~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d  230 (391)
T 1l0q_A          153 TVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (391)
T ss_dssp             EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             EEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEE
Confidence            77755 446889999999887 5667889999999999887766653 55788999999999998887   689999999


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYI-LAATLDNTLKLWDSY  226 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~s~d~~v~vwd~~  226 (231)
                      +.+++.+..+..+  ..+..++|+|+|++| ++++.|+.|++||..
T Consensus       231 ~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          231 TGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             TTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             CCCCeEEEEEecC--CCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            9998877766543  346789999999988 566789999999974

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=3.9e-26  Score=181.04  Aligned_cols=201  Identities=10%  Similarity=0.086  Sum_probs=170.1

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEeCCCc
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSG  101 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~~~  101 (231)
                      +.+|...|.+++|+++++++++++.|+.|++|+..+++....+..+...+..++|+|+++.++ ++..++.|++||+.++
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~  244 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK  244 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence            347888999999999999999999999999999998888888888888899999999999885 5557999999999998


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEee--------cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeE-EEEe
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGS--------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI-VSSS  172 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~  172 (231)
                      +....+..+ ..+..++|+|+++.+++++        .|+.|++||+++++.+..+ .+...+..++|+|+++.+ ++++
T Consensus       245 ~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~  322 (433)
T 3bws_A          245 LEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM  322 (433)
T ss_dssp             EEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET
T ss_pred             cEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec
Confidence            887777654 4588999999999999888        4889999999988776654 345578899999999755 5668


Q ss_pred             cCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC---------------CCeEEEEeCCC
Q psy4391         173 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL---------------DNTLKLWDSYP  227 (231)
Q Consensus       173 ~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~---------------d~~v~vwd~~~  227 (231)
                      .++.+.+||+.+++....+.  ....+..++|+|+|++|++++.               ||.|.+||...
T Consensus       323 ~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~  390 (433)
T 3bws_A          323 CCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT  390 (433)
T ss_dssp             TTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred             CCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence            89999999999888776654  3456789999999999988886               57999999743

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.6e-25  Score=177.61  Aligned_cols=201  Identities=15%  Similarity=0.161  Sum_probs=166.3

Q ss_pred             EeecccccceEEEEECCCCCEEEE-EeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec--------CCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLAS-SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS--------DDK   91 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~~g   91 (231)
                      ..+..|...+.+++|+|+++.+++ +..++.|++||..+++....+..+ ..+..++|+|+++.+++++        .|+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg  283 (433)
T 3bws_A          205 ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGG  283 (433)
T ss_dssp             EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCE
T ss_pred             EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCC
Confidence            445578889999999999998854 557999999999888777766654 4589999999999998887        588


Q ss_pred             cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEE-EEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEE
Q psy4391          92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS  170 (231)
Q Consensus        92 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  170 (231)
                      .|++||+.+++....+. +...+..++|+|+++.+ ++++.++.|++||+++++.+..+. +...+.+++|+|+++++++
T Consensus       284 ~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~  361 (433)
T 3bws_A          284 RLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYV  361 (433)
T ss_dssp             EEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEE
T ss_pred             eEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEE
Confidence            99999999888766553 34567889999999754 666889999999999988777765 5667899999999998888


Q ss_pred             Eec---------------CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCC
Q psy4391         171 SSY---------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSY  226 (231)
Q Consensus       171 ~~~---------------dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~~  226 (231)
                      ++.               ||.|++||+.+++.+..+..  ...+..++|+|+|++|++++. |+.|++|+..
T Consensus       362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            776               57999999999987776654  346789999999999998875 9999999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1.3e-25  Score=177.67  Aligned_cols=199  Identities=18%  Similarity=0.186  Sum_probs=160.3

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCC---cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCCc--EEE
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKT--LKI   95 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg---~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~--i~~   95 (231)
                      .+.+|...+.+++|+|+|++|++++.++   .|++||..+++.. .+..+...+.+++|+|+|+.|+ +++.++.  |++
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~  251 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV  251 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEE
Confidence            4457888999999999999999988875   9999999887764 4566677899999999999887 6665554  999


Q ss_pred             EeCCCceeeeeecCCCcceEEEEECCCCCEEEEeec-CC--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe
Q psy4391          96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      ||+.+++. ..+..+...+..+.|+|+|+.|++++. ++  .|++||+.+++. ..+..+...+..++|+|+|++|++++
T Consensus       252 ~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~  329 (415)
T 2hqs_A          252 MDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVS  329 (415)
T ss_dssp             EETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEE
T ss_pred             EECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEE
Confidence            99988775 456667778899999999999988876 44  677889987764 44555667888999999999999887


Q ss_pred             cC---CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCC---eEEEEeCC
Q psy4391         173 YD---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDSY  226 (231)
Q Consensus       173 ~d---g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~---~v~vwd~~  226 (231)
                      .+   ..|.+||+.+++.. .+...  ..+..++|+|+|++|++++.++   .|.+||..
T Consensus       330 ~~~g~~~i~~~d~~~~~~~-~l~~~--~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          330 SNGGQQHIAKQDLATGGVQ-VLSST--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             ECSSCEEEEEEETTTCCEE-ECCCS--SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             CcCCceEEEEEECCCCCEE-EecCC--CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence            64   58999999988753 33322  2678899999999999988877   89999863

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=1e-25  Score=171.34  Aligned_cols=194  Identities=24%  Similarity=0.421  Sum_probs=160.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy4391          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~  107 (231)
                      ..+++||+++ +|++| .|++|++||..+++....+.  +|...|.+++|+|+++++++|+.||.|++||+++++.+..+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            4679999876 66665 59999999999998877665  56677999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc-eeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCc
Q psy4391         108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  186 (231)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  186 (231)
                      .+|...+.++.  +++..+++++.++.+++|+...+. .+..+..|...+..+.++++++++++++.||.|++||+++++
T Consensus       106 ~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  183 (318)
T 4ggc_A          106 TSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  183 (318)
T ss_dssp             ECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred             cCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence            99888776554  556799999999999999988764 456677889999999999999999999999999999998765


Q ss_pred             eee---eeecCCCCCeEEEEECCCCCEE---EEEeCCCeEEEEeCCC
Q psy4391         187 CLK---TLIDDDNPPVSFVKFSPNGKYI---LAATLDNTLKLWDSYP  227 (231)
Q Consensus       187 ~~~---~~~~~~~~~i~~~~~s~~g~~l---~~~s~d~~v~vwd~~~  227 (231)
                      ...   .........+..++++|++..+   ++++.++.|++||...
T Consensus       184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~  230 (318)
T 4ggc_A          184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  230 (318)
T ss_dssp             TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT
T ss_pred             ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc
Confidence            432   2223445678889999987644   3566789999999643

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=3.5e-25  Score=175.96  Aligned_cols=198  Identities=15%  Similarity=0.101  Sum_probs=153.0

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCC----------cEEEE-----EecccccEEEEEECCCCCEEE----Ee
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----------KFEKT-----ISGHKLGISDVAWSSDSRLLV----SG   87 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~----------~~~~~-----~~~~~~~v~~~~~~~~~~~l~----~~   87 (231)
                      ...+..+++++++.++++++.++ +++|+....          .....     ...+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34578999999999999999888 888764210          01111     112345699999999999999    78


Q ss_pred             cCCCcEEEEeCCCc--------e---eeeeecCCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCceeeeccCCCCC
Q psy4391          88 SDDKTLKIWELSSG--------K---CLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP  155 (231)
Q Consensus        88 ~~~g~i~~~d~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  155 (231)
                      +.|+.|++||+.+.        +   ....+.+|...+.+++|+|+ +.++++++.|+.|++||++++..+.....|...
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            88999999998654        1   13445567889999999998 789999999999999999988766666677889


Q ss_pred             eEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCC------CCCeEEEEECCCCCEEEEEe-CCC------eEEE
Q psy4391         156 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD------NPPVSFVKFSPNGKYILAAT-LDN------TLKL  222 (231)
Q Consensus       156 v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~------~~~i~~~~~s~~g~~l~~~s-~d~------~v~v  222 (231)
                      +.+++|+|+|++|++|+.||.|++||++ ++....+....      ...+..++|++++.++++.+ .||      .+++
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i  273 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM  273 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence            9999999999999999999999999998 44444332221      12678899999988876544 343      3889


Q ss_pred             EeCC
Q psy4391         223 WDSY  226 (231)
Q Consensus       223 wd~~  226 (231)
                      ||..
T Consensus       274 ~~l~  277 (434)
T 2oit_A          274 ALLP  277 (434)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9964

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=9e-24  Score=167.05  Aligned_cols=202  Identities=12%  Similarity=0.093  Sum_probs=154.7

Q ss_pred             EeecccccceEEEEECC--------------CCCEEEEEeCC------CcEEEeecCCCcEEEEEecccccEEEEEECCC
Q psy4391          21 FTLAGHTKAVSSVKFSP--------------NGEWLASSSAD------KLIKIWGAYDGKFEKTISGHKLGISDVAWSSD   80 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~--------------~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~   80 (231)
                      ..+.+|...+..+++++              .+..++.++.+      +.|++||... .....+..|...+.+++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence            44556666666666553              15566555443      7999999864 445667777888999999999


Q ss_pred             CCEEEEecCCC---cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEE-EeecCCc--EEEEECCCCceeeeccCCCC
Q psy4391          81 SRLLVSGSDDK---TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDES--VRIWDVRTGKCLKTLPAHSD  154 (231)
Q Consensus        81 ~~~l~~~~~~g---~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~v~d~~~~~~~~~~~~~~~  154 (231)
                      |+.|++++.++   .|++||+.+++.. .+..+...+.+++|+|+|+.|+ +++.++.  |++||+++++. ..+..+..
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~  267 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRS  267 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSS
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCC
Confidence            99999998775   9999999988765 4555667889999999999887 5555554  99999998775 56667778


Q ss_pred             CeEEEEEcCCCCeEEEEec-CC--eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeCCC
Q psy4391         155 PVSAVHFNRDGSLIVSSSY-DG--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---NTLKLWDSYP  227 (231)
Q Consensus       155 ~v~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d---~~v~vwd~~~  227 (231)
                      .+.+++|+|||++|++++. ++  .|.+||+.+++.. .+. .+...+..++|+|+|++|++++.+   ..|.+||...
T Consensus       268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence            8999999999999988776 44  7888899887643 222 234467789999999999998865   5899999643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=5.5e-23  Score=154.30  Aligned_cols=201  Identities=18%  Similarity=0.246  Sum_probs=149.3

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCcEEEeecCC-CcEEEEEecc-cccEEEEEECCCCCEEEEec--CCCcEEE--E
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGH-KLGISDVAWSSDSRLLVSGS--DDKTLKI--W   96 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~~g~i~~--~   96 (231)
                      +..|...|.+++|+|+|++|++++ ++.|.+|+..+ ++.......+ ...+.+++|+|+++++++++  .++...+  +
T Consensus        37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~  115 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLL  115 (297)
T ss_dssp             EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred             eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence            446788999999999999999876 78999999988 7666555444 35678899999999999888  3344444  5


Q ss_pred             eCCCceeeeeecCCCcceEEEEECCCCCEEE-EeecCCcEEEEECCC-CceeeeccCCCCCeEEEEEcCCCCeEEEEe-c
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-Y  173 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~  173 (231)
                      +..+++ ...+..+ ..+..+.|+|+++.++ ++..++.+++|+++. +.....+..+...+.+++|+|++++++.++ .
T Consensus       116 ~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  193 (297)
T 2ojh_A          116 PSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR  193 (297)
T ss_dssp             ETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT
T ss_pred             ECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC
Confidence            555544 3334333 3477889999999887 677889889988532 223455666778899999999999888666 5


Q ss_pred             CCeEEEEeCC-CCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC-----------CeEEEEeCCC
Q psy4391         174 DGLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-----------NTLKLWDSYP  227 (231)
Q Consensus       174 dg~i~v~d~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d-----------~~v~vwd~~~  227 (231)
                      ++.+.+|++. .+.....+. .+...+..++|+|+|++|++++.+           +.|.+||...
T Consensus       194 ~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~  258 (297)
T 2ojh_A          194 TGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG  258 (297)
T ss_dssp             TSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred             CCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence            8888888775 333344333 334467789999999999988876           5699999643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=4.6e-23  Score=173.79  Aligned_cols=197  Identities=14%  Similarity=0.173  Sum_probs=154.1

Q ss_pred             ccceEEEEECCCCCEEEEEeC-CC-----cEEEeecCCCcEEEEEecccc------------------------cEEEEE
Q psy4391          27 TKAVSSVKFSPNGEWLASSSA-DK-----LIKIWGAYDGKFEKTISGHKL------------------------GISDVA   76 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~-dg-----~i~i~~~~~~~~~~~~~~~~~------------------------~v~~~~   76 (231)
                      ...+..++|+|||++|++++. |+     .|++|+..+++....+..+..                        .+..++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456899999999999999887 88     899999988877666654332                        367899


Q ss_pred             ECCCCCEEEEecCCCcEEEEeCCCce--eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCC
Q psy4391          77 WSSDSRLLVSGSDDKTLKIWELSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD  154 (231)
Q Consensus        77 ~~~~~~~l~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~  154 (231)
                      |+|||++|++++. +.|++||+.++.  ....+..+...+..+.|+|+|+.|+.++. +.|++||+.+++.......+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcc
Confidence            9999999998876 899999999872  34455566677899999999999998874 6899999998876544433332


Q ss_pred             C----------------eEEEEEcCCCCeEEEEecCC---------------------------------eEEEEeCCC-
Q psy4391         155 P----------------VSAVHFNRDGSLIVSSSYDG---------------------------------LCRIWDTAS-  184 (231)
Q Consensus       155 ~----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i~v~d~~~-  184 (231)
                      .                +..++|+|||++|++++.|+                                 .|.+||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence            2                46799999999999987765                                 788999988 


Q ss_pred             Cceeeeeec-CCCCCeEEEEECCCCCEEEEEeC-----CCeEEEEeCC
Q psy4391         185 GQCLKTLID-DDNPPVSFVKFSPNGKYILAATL-----DNTLKLWDSY  226 (231)
Q Consensus       185 ~~~~~~~~~-~~~~~i~~~~~s~~g~~l~~~s~-----d~~v~vwd~~  226 (231)
                      ++....... .+...+..++| |||++|++++.     +..|.+||..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~  320 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA  320 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT
T ss_pred             CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC
Confidence            765433222 23456788999 99999998764     5689999864

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=1.3e-21  Score=150.81  Aligned_cols=200  Identities=10%  Similarity=0.045  Sum_probs=159.8

Q ss_pred             cccceEEEEECCCCCEEEEEeC-------CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEe
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSA-------DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWE   97 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~-------dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d   97 (231)
                      ....+..++|+|+|+++++++.       ++.|.+||..+++....+... ..+..++|+|++++++ +...++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            3457889999999998887764       568999999988877777543 3467789999999654 555578999999


Q ss_pred             CCCceeeeeecCCCc---------ceEEEEECCCCCEEEEee--cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCC
Q psy4391          98 LSSGKCLKTLKGHSN---------YVFCCNFNPQSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS  166 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  166 (231)
                      .++++....+..+..         .+..+.++|+++.+++++  .++.|.+||+++++.+..+..+...+..++|+|+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence            999887777665332         267899999999887776  478899999999988877764555678899999999


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeeeecC---CCCCeEEEEECCCCCEEEEEeCC-CeEEEEeCC
Q psy4391         167 LIVSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLD-NTLKLWDSY  226 (231)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~---~~~~i~~~~~s~~g~~l~~~s~d-~~v~vwd~~  226 (231)
                      ++++++.++.+.+||+.+++....+...   ....+..++|+|+|+++++++.+ +.|.+||..
T Consensus       198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  261 (353)
T 3vgz_A          198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR  261 (353)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred             EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            9999999999999999999877665542   23346779999999988777654 899999974

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=1.9e-21  Score=148.89  Aligned_cols=198  Identities=12%  Similarity=0.096  Sum_probs=147.6

Q ss_pred             ccccceEEEEECCCCCEEEEEeC-CCcEEEeecCCCcE-EEEEecccccEEEEEECCCCCEEEEecCCC---cEEEEeCC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKF-EKTISGHKLGISDVAWSSDSRLLVSGSDDK---TLKIWELS   99 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~d~~   99 (231)
                      .+...+ .++|+|+|+++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++   .|.+||+.
T Consensus        38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~  116 (331)
T 3u4y_A           38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL  116 (331)
T ss_dssp             CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred             ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence            344556 9999999997766555 88999999988876 566655554444489999999998665553   89999999


Q ss_pred             CceeeeeecCCCcceEEEEECCCCCEEEEe-ecCCc-EEEEECCCCcee----eeccCCCCCeEEEEEcCCCCeEEEE-e
Q psy4391         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDES-VRIWDVRTGKCL----KTLPAHSDPVSAVHFNRDGSLIVSS-S  172 (231)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~v~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~-~  172 (231)
                      +++.+..+..+ .....++|+|+|+.++++ ..++. +.+|++.....+    .........+..++|+|++++++++ .
T Consensus       117 ~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  195 (331)
T 3u4y_A          117 KNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL  195 (331)
T ss_dssp             TTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET
T ss_pred             CCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC
Confidence            98887777654 346789999999866555 55588 999998754332    1112334567899999999966554 4


Q ss_pred             cCCeEEEEeCCCCce---eeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCC
Q psy4391         173 YDGLCRIWDTASGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSY  226 (231)
Q Consensus       173 ~dg~i~v~d~~~~~~---~~~~~~~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~~  226 (231)
                      .++.|.+||+.+++.   +..+...  ..+..++|+|+|++|++++. ++.|.+||..
T Consensus       196 ~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          196 IGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             TTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred             CCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence            688999999998887   5555432  34567899999998877654 7799999964

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=1.8e-21  Score=150.11  Aligned_cols=196  Identities=8%  Similarity=0.059  Sum_probs=156.5

Q ss_pred             cceEEEEECCCCCEEEE-EeCCCcEEEeecCCCcEEEEEecccc---------cEEEEEECCCCCEEEEec--CCCcEEE
Q psy4391          28 KAVSSVKFSPNGEWLAS-SSADKLIKIWGAYDGKFEKTISGHKL---------GISDVAWSSDSRLLVSGS--DDKTLKI   95 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~~g~i~~   95 (231)
                      ..+..++|+|+|++++. ...++.|.+||..+++....+..+..         .+..++|+|+++.+++++  .++.|.+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~  168 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV  168 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence            34678999999996654 45578999999998888777664322         268899999999877765  4788999


Q ss_pred             EeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccC----CCCCeEEEEEcCCCCeEEEE
Q psy4391          96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA----HSDPVSAVHFNRDGSLIVSS  171 (231)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~  171 (231)
                      ||..+++....+..+...+..+.|+|+++.+++++.++.+.+||+.+++....+..    +...+..++|+|++++++++
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred             EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence            99999988887764455567889999999999999999999999999987766554    34567889999999987766


Q ss_pred             ec-CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCC
Q psy4391         172 SY-DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSY  226 (231)
Q Consensus       172 ~~-dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~  226 (231)
                      +. ++.|.+||+.+++.+..+.....   ..++|+|+|++++++. .++.|.+||..
T Consensus       249 ~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             ESSSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECC
Confidence            65 48999999999987776654332   4588999999776666 68999999964

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=7.7e-22  Score=160.77  Aligned_cols=192  Identities=14%  Similarity=0.105  Sum_probs=154.8

Q ss_pred             EECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC--CCceeeeeecCCC
Q psy4391          34 KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL--SSGKCLKTLKGHS  111 (231)
Q Consensus        34 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~--~~~~~~~~~~~~~  111 (231)
                      .++|++.+++++..++.|.+||..+++....+..+.. +..++|+|+++++++++.++.|.+||+  .+++.+..+.. .
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence            4889998899999999999999999998888874333 889999999999999999999999999  78888888774 4


Q ss_pred             cceEEEEECC----CCCEEEEeec-CCcEEEEECCCCceeeeccCC-----------CCCeEEEEEcCCCCe-EEEEecC
Q psy4391         112 NYVFCCNFNP----QSNLIVSGSF-DESVRIWDVRTGKCLKTLPAH-----------SDPVSAVHFNRDGSL-IVSSSYD  174 (231)
Q Consensus       112 ~~v~~~~~~~----~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~-l~~~~~d  174 (231)
                      ..+..++|+|    +|+++++++. ++.|.+||..+++.+..+..+           ...+.++.++|++.. +++...+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence            4578999999    9999999884 899999999999887776542           226889999997765 4566778


Q ss_pred             CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCC
Q psy4391         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSYP  227 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~~  227 (231)
                      +.|.+||..+.+.+..........+..++|+|+|++|++++ .++.|.+||...
T Consensus       302 g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t  355 (543)
T 1nir_A          302 GKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD  355 (543)
T ss_dssp             TEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             CeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC
Confidence            99999999886654421112233456789999999877655 588999999743

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=2.6e-22  Score=159.42  Aligned_cols=159  Identities=12%  Similarity=0.112  Sum_probs=128.6

Q ss_pred             cccceEEEEECCCCCEEE----EEeCCCcEEEeecCCC--------c---EEEEEecccccEEEEEECCC-CCEEEEecC
Q psy4391          26 HTKAVSSVKFSPNGEWLA----SSSADKLIKIWGAYDG--------K---FEKTISGHKLGISDVAWSSD-SRLLVSGSD   89 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~----~~~~dg~i~i~~~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~   89 (231)
                      |...|.+++|+|+|++|+    +|+.|+.|++||+.+.        +   ....+.+|...|.+++|+|+ +.++++++.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            556799999999999999    7888999999997543        1   13445668889999999997 789999999


Q ss_pred             CCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC-------CCCeEEEEEc
Q psy4391          90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-------SDPVSAVHFN  162 (231)
Q Consensus        90 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~  162 (231)
                      ||.|++||++++........|...+.+++|+|+|++|++|+.|+.|++||++ ++....+..+       ...+.+++|+
T Consensus       171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~  249 (434)
T 2oit_A          171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI  249 (434)
T ss_dssp             TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred             CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence            9999999999887666666677889999999999999999999999999998 5444444332       2378999999


Q ss_pred             CCCCeEEEE-ecCC------eEEEEeCCCC
Q psy4391         163 RDGSLIVSS-SYDG------LCRIWDTASG  185 (231)
Q Consensus       163 ~~~~~l~~~-~~dg------~i~v~d~~~~  185 (231)
                      +++.++++. ..+|      .+++|++...
T Consensus       250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          250 GTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            988777543 3343      3889999865

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=3.7e-21  Score=147.53  Aligned_cols=200  Identities=12%  Similarity=0.230  Sum_probs=144.7

Q ss_pred             ccccceEEEEECCCCCEEEEEeCC-CcEEEeecC--CCcEE--EEEecccccEEEEEECCCCCEEEEec-CCCcEEEEeC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSAD-KLIKIWGAY--DGKFE--KTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWEL   98 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~d-g~i~i~~~~--~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~~~d~   98 (231)
                      .|...+.+++|+|+|++|++++.+ +.|.+|++.  ++...  ..+..+. .+..++|+|+++++++++ .++.|.+||+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            466788899999999988888776 899999987  44432  3333333 678899999999886665 4788999999


Q ss_pred             C---CceeeeeecCCCcceEEEEECCCCCEEEEee-cCCcEEEEECCC-Cceee----eccC-CCCCeEEEEEcCCCCeE
Q psy4391          99 S---SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRT-GKCLK----TLPA-HSDPVSAVHFNRDGSLI  168 (231)
Q Consensus        99 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~l  168 (231)
                      .   ..+....+..+ ..+.+++|+|+++.+++++ .++.|++||+.+ ++...    .... ....+..++|+|+++++
T Consensus       114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l  192 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA  192 (343)
T ss_dssp             ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred             CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence            3   34444444433 3477889999999888887 889999999987 54321    2222 23478889999999977


Q ss_pred             EEEe-cCCeEEEEeCCC--Cce--eeeeecC-----CCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCC
Q psy4391         169 VSSS-YDGLCRIWDTAS--GQC--LKTLIDD-----DNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSY  226 (231)
Q Consensus       169 ~~~~-~dg~i~v~d~~~--~~~--~~~~~~~-----~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~  226 (231)
                      ++++ .++.+.+||+..  ++.  .......     ....+..++|+|+|++|+++. .++.|.+||..
T Consensus       193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            6554 789999999953  332  1222111     122456799999999887554 68999999975

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=6.2e-21  Score=145.96  Aligned_cols=192  Identities=11%  Similarity=0.087  Sum_probs=149.5

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCcEEEeecCCCcEEEEEecc-----cccEEEEEECCCCCEEEEec------------CC
Q psy4391          29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGH-----KLGISDVAWSSDSRLLVSGS------------DD   90 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~------------~~   90 (231)
                      .+..++|+|+|+.++ ++..++.|.+||..+++....+...     ...+..++|+|++++++++.            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            478899999998764 5556789999999888877666532     12466789999999988885            57


Q ss_pred             CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC-----------------
Q psy4391          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-----------------  153 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----------------  153 (231)
                      +.|.+||+.+++....+.. ...+..+.|+|+++.++++  ++.|++||+.+++....+..+.                 
T Consensus       115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  191 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeee
Confidence            9999999999887776654 3446678899999988877  6889999998876554332111                 


Q ss_pred             -------------------------------------------------CCeEEEEEcCCCCeEEEEecCCeEEEEeCCC
Q psy4391         154 -------------------------------------------------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       154 -------------------------------------------------~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (231)
                                                                       ..+..++|+|++++++++  ++.|.+||+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~  269 (337)
T 1pby_B          192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred             ccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence                                                             123458999999999888  79999999999


Q ss_pred             CceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       185 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ++.+..+...  ..+..++|+|+|++|++++.++.|.+||...
T Consensus       270 ~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          270 NASIKRVPLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             TEEEEEEECS--SCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             CcCcceecCC--CceeeEEECCCCCEEEEEcCCCcEEEEECcC
Confidence            8877665433  2356789999999999999999999999743

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=4.4e-23  Score=173.45  Aligned_cols=195  Identities=11%  Similarity=0.140  Sum_probs=149.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccc---cEEEEEECCCCCEEEEecCC---------CcEEEE
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSRLLVSGSDD---------KTLKIW   96 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~~---------g~i~~~   96 (231)
                      .+.+++|+|||+++++ +.||.|++||..+++....+..+..   .+..++|+|||++|++++.+         +.+++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678899999997766 7899999999998887777766554   48899999999999988764         678899


Q ss_pred             eCCCceeeeeec---CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCe-----------------
Q psy4391          97 ELSSGKCLKTLK---GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPV-----------------  156 (231)
Q Consensus        97 d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v-----------------  156 (231)
                      |+.+++. ..+.   .+...+..++|+|+|+.|+.++. +.|++||+.+++.......+...+                 
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            9998775 2332   23334677899999999999886 789999999887655544433333                 


Q ss_pred             -EEEEEcCCCCeEEEEecCC----------------------------------eEEEEeCCCCceeeeeecC-----CC
Q psy4391         157 -SAVHFNRDGSLIVSSSYDG----------------------------------LCRIWDTASGQCLKTLIDD-----DN  196 (231)
Q Consensus       157 -~~~~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~~~~~~~~~~-----~~  196 (231)
                       .+++|+|||+.|++++.++                                  .|.+||+.+++....+...     ..
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE  254 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence             7899999999999887553                                  7999999888754444322     13


Q ss_pred             CCeEEEEECCCCCEEEEEeC----CCeEEEEeCC
Q psy4391         197 PPVSFVKFSPNGKYILAATL----DNTLKLWDSY  226 (231)
Q Consensus       197 ~~i~~~~~s~~g~~l~~~s~----d~~v~vwd~~  226 (231)
                      ..+..++|+|||++|++.+.    +..|.+||..
T Consensus       255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~  288 (723)
T 1xfd_A          255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT  288 (723)
T ss_dssp             EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred             ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC
Confidence            45788999999998877653    3579999964

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=1.1e-20  Score=144.85  Aligned_cols=194  Identities=15%  Similarity=0.288  Sum_probs=137.9

Q ss_pred             ceEEEEECCCCCEEEEEeC-CCcEEEeecCCC---cEEEEEecccccEEEEEECCCCCEEEEec-CCCcEEEEeCCC-ce
Q psy4391          29 AVSSVKFSPNGEWLASSSA-DKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWELSS-GK  102 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~~~d~~~-~~  102 (231)
                      .+..++|+|+|+++++++. ++.|.+|+..++   .....+.. ...+..++|+|+++++++++ .++.|.+||+.+ ++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            7889999999998876654 788999998433   23333333 34578899999999888776 889999999987 54


Q ss_pred             eee----eecC-CCcceEEEEECCCCCEEEEee-cCCcEEEEECCC--Cce--eeec---cCC---CCCeEEEEEcCCCC
Q psy4391         103 CLK----TLKG-HSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRT--GKC--LKTL---PAH---SDPVSAVHFNRDGS  166 (231)
Q Consensus       103 ~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~--~~~--~~~~---~~~---~~~v~~~~~~~~~~  166 (231)
                      ...    .+.. ....+..+.|+|++++++.++ .++.+.+||++.  ++.  ....   ...   ...+..++|+|+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~  243 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR  243 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence            322    2222 234677899999999776554 789999999954  322  1111   111   23567899999999


Q ss_pred             eEEE-EecCCeEEEEeCC--CC--ceeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeC
Q psy4391         167 LIVS-SSYDGLCRIWDTA--SG--QCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       167 ~l~~-~~~dg~i~v~d~~--~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~  225 (231)
                      ++++ +..++.|.+||+.  ++  +.+..+... . .+..++|+|+|++|++++ .++.|.+|+.
T Consensus       244 ~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          244 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-T-QPRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-S-SCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             EEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-C-ccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence            8874 4478999999998  32  233333222 2 266799999999998888 5799999954

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=4.7e-22  Score=167.65  Aligned_cols=194  Identities=12%  Similarity=0.077  Sum_probs=149.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCc--EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeee
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      .|.+++|+|||++|++++. +.|.+|+..++.  ....+..+...+..++|+|||++|++++. +.|++||+.+++..+.
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence            3789999999999998875 999999998762  33445566677999999999999988874 6899999998876554


Q ss_pred             ecCCCcc----------------eEEEEECCCCCEEEEeecCC---------------------------------cEEE
Q psy4391         107 LKGHSNY----------------VFCCNFNPQSNLIVSGSFDE---------------------------------SVRI  137 (231)
Q Consensus       107 ~~~~~~~----------------v~~~~~~~~~~~l~~~~~d~---------------------------------~i~v  137 (231)
                      ...+...                +..+.|+|||+.|++++.|+                                 .|++
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~  267 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV  267 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence            4433221                35689999999999987765                                 7889


Q ss_pred             EECCC-Cceeeecc--CCCCCeEEEEEcCCCCeEEEEec-----CCeEEEEeCCCCceeeeeecCCCC---CeEEEEECC
Q psy4391         138 WDVRT-GKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNP---PVSFVKFSP  206 (231)
Q Consensus       138 ~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~~---~i~~~~~s~  206 (231)
                      ||+.+ ++......  .+...+..++| |||++|++++.     +..|.+||+.+++....+......   .+..++|+|
T Consensus       268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred             EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence            99988 76544332  35667899999 99999987654     468999999998866554433322   335688999


Q ss_pred             CCCEEEEEeCCCeEEEEeC
Q psy4391         207 NGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       207 ~g~~l~~~s~d~~v~vwd~  225 (231)
                      ||+++++++.||.++||..
T Consensus       347 dg~~~~~~~~~g~~~l~~~  365 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRI  365 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEE
T ss_pred             CCeEEEEecCCCccEEEEE
Confidence            9998888888998888864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=1.8e-20  Score=152.66  Aligned_cols=195  Identities=12%  Similarity=0.080  Sum_probs=151.1

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEeec--CCCcEEEEEecccccEEEEEECC----CCCEEEEecC-CCcEEEEeCCCce
Q psy4391          30 VSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSS----DSRLLVSGSD-DKTLKIWELSSGK  102 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~dg~i~i~~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-~g~i~~~d~~~~~  102 (231)
                      +..++|+|+|++|++++.|+.|++||.  .+++....+.. ...+..++|+|    +|+++++++. ++.|.+||..+++
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            789999999999999999999999999  77777777764 44678999999    9999988874 8999999999998


Q ss_pred             eeeeecCC-----------CcceEEEEECCCCCE-EEEeecCCcEEEEECCCCceee--eccCCCCCeEEEEEcCCCCeE
Q psy4391         103 CLKTLKGH-----------SNYVFCCNFNPQSNL-IVSGSFDESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus       103 ~~~~~~~~-----------~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l  168 (231)
                      .+..+..+           ...+..+.++|++.. +++...++.|.+||+.+.+.+.  .+. +...+..+.|+|+++++
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l  338 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYF  338 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEE
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEE
Confidence            88777542           226788999997654 5566778999999998765443  333 34567789999999987


Q ss_pred             EEEe-cCCeEEEEeCCCCceeeeeecC---CCCCeEEEEECCC-CCEEEEEe-CCCeEEEEeCCC
Q psy4391         169 VSSS-YDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPN-GKYILAAT-LDNTLKLWDSYP  227 (231)
Q Consensus       169 ~~~~-~dg~i~v~d~~~~~~~~~~~~~---~~~~i~~~~~s~~-g~~l~~~s-~d~~v~vwd~~~  227 (231)
                      ++++ .++.|.+||+.+++++..+...   +......+ ++|+ |+.++++. .|+.|.+||..+
T Consensus       339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence            7655 5889999999999987776532   21122222 5787 56666665 579999999865

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=9.6e-22  Score=165.30  Aligned_cols=194  Identities=10%  Similarity=0.137  Sum_probs=144.3

Q ss_pred             ceEEEEECCCCCEEEEEeCC---------CcEEEeecCCCcEEEEEec---ccccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          29 AVSSVKFSPNGEWLASSSAD---------KLIKIWGAYDGKFEKTISG---HKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~d---------g~i~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      .|.+++|||||++|++++.+         +.+.+||..+++. ..+..   +...+..++|+|||+.|++++. +.|++|
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~  139 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC  139 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence            48999999999999988764         7788999988765 33332   2334778899999999998876 799999


Q ss_pred             eCCCceeeeeecCCCcc------------------eEEEEECCCCCEEEEeecCC-------------------------
Q psy4391          97 ELSSGKCLKTLKGHSNY------------------VFCCNFNPQSNLIVSGSFDE-------------------------  133 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~l~~~~~d~-------------------------  133 (231)
                      |+.+++..+....+...                  +..+.|+|||+.|++++.++                         
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (723)
T 1xfd_A          140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (723)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence            99988766555443322                  26799999999999887543                         


Q ss_pred             ---------cEEEEECCCCceeeeccCC------CCCeEEEEEcCCCCeEEEEec----CCeEEEEeCCCCceeeeeecC
Q psy4391         134 ---------SVRIWDVRTGKCLKTLPAH------SDPVSAVHFNRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDD  194 (231)
Q Consensus       134 ---------~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~  194 (231)
                               .|++||+.+++....+..+      ...+..++|+|||+++++...    +..|.+||+.+++....+...
T Consensus       220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~  299 (723)
T 1xfd_A          220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE  299 (723)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence                     7899999988754555443      457889999999998876643    357999999998865544333


Q ss_pred             CCCCe----EEEEECCCCCEEEEE--eCCC------eEEEEe
Q psy4391         195 DNPPV----SFVKFSPNGKYILAA--TLDN------TLKLWD  224 (231)
Q Consensus       195 ~~~~i----~~~~~s~~g~~l~~~--s~d~------~v~vwd  224 (231)
                      ....+    ..++|+|||+.|+..  ..++      .|.+||
T Consensus       300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence            22222    257899999987764  4566      577777

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=2.4e-21  Score=168.97  Aligned_cols=194  Identities=12%  Similarity=0.097  Sum_probs=160.0

Q ss_pred             cccceEEEEEC-CCCCEEEEEeCCCcEEEeecCCCcEEEEEecccc-cEEEEEECCCCCEEEEecCCCcEE-EEeCCCce
Q psy4391          26 HTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL-GISDVAWSSDSRLLVSGSDDKTLK-IWELSSGK  102 (231)
Q Consensus        26 h~~~i~~~~~~-~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~g~i~-~~d~~~~~  102 (231)
                      |...+.+++|+ |+|++|+.++ ++.+.+|+..++... .+..+.. .+..++|+ +|+.+++++.+..+. +|++.+++
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~  370 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK  370 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence            44578999999 9999998877 889999998776544 3555555 78999999 999999988888888 99998776


Q ss_pred             eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC-------
Q psy4391         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-------  175 (231)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------  175 (231)
                      ... +..+...+..++|+|+|+.|++++.++.|++||+.+++.......|.+.+..++|+|||++|++++.++       
T Consensus       371 ~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~  449 (1045)
T 1k32_A          371 AEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY  449 (1045)
T ss_dssp             EEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred             ceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence            543 336667789999999999999999999999999999987777667888889999999999998887654       


Q ss_pred             ---eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         176 ---LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       176 ---~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                         .|++||+.+++ ...+. .+...+..++|+|||++|++++.++...+|+.
T Consensus       450 ~~~~i~l~d~~~g~-~~~l~-~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          450 VMQAIHVYDMEGRK-IFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             CEEEEEEEETTTTE-EEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             CCCeEEEEECCCCc-EEEee-CCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence               89999999877 33333 33445677999999999999998888888874

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=3.1e-21  Score=144.74  Aligned_cols=189  Identities=20%  Similarity=0.236  Sum_probs=140.5

Q ss_pred             ccceEEEEECCCCCEEEEEe--CCCcEEEeec--CCCcEEEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEeC--C
Q psy4391          27 TKAVSSVKFSPNGEWLASSS--ADKLIKIWGA--YDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWEL--S   99 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~--~dg~i~i~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~--~   99 (231)
                      ...+.+++|+|+|++|+++.  .++...+|..  .++. ...+..+ ..+..++|+|+++.++ ++..++.+++|++  .
T Consensus        84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~  161 (297)
T 2ojh_A           84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID  161 (297)
T ss_dssp             CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence            36788999999999999888  3355566554  4443 3344433 3488899999999887 6778898888885  3


Q ss_pred             CceeeeeecCCCcceEEEEECCCCCEEEEee-cCCcEEEEECC-CCceeeeccCCCCCeEEEEEcCCCCeEEEEecC---
Q psy4391         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVR-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD---  174 (231)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  174 (231)
                      +++ ...+..+...+..+.|+|+++.++.++ .++.+++|++. .+.....+..+...+..++|+|++++|++++.+   
T Consensus       162 ~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  240 (297)
T 2ojh_A          162 SGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADV  240 (297)
T ss_dssp             TCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTC
T ss_pred             CCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCC
Confidence            343 344555667789999999999888766 58899999876 455566677777788899999999999888765   


Q ss_pred             --------CeEEEEeCCCCceeeeee-cCCCCCeEEEEECCCCCEEEEEeCCC
Q psy4391         175 --------GLCRIWDTASGQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDN  218 (231)
Q Consensus       175 --------g~i~v~d~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~~s~d~  218 (231)
                              +.|.+||+.+++...... ..+...+..++|+|+|++|++++.+.
T Consensus       241 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          241 FDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                    569999998876533222 13344567789999999999888654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=5.6e-20  Score=141.76  Aligned_cols=201  Identities=15%  Similarity=0.180  Sum_probs=138.6

Q ss_pred             ccccceEEEEECCCCCEEEEEeC---CCcEEEeecCCCcE--EEEEecccccEEEEEECCCCCEEEEec-CCCcEEEEeC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSA---DKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWEL   98 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~~~d~   98 (231)
                      .+......++|+|+|+ |++++.   ++.|.+|++.++..  ...+..+...+..++|+|++++|++++ .++.+.+|++
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            4456677899999999 555443   68999999976653  233334556678899999999888877 6789999999


Q ss_pred             CC-c--eeeeeecCC---------CcceEEEEECCCCCEEEEeecCCcEEEEECC-CCceee--eccC-CCCCeEEEEEc
Q psy4391          99 SS-G--KCLKTLKGH---------SNYVFCCNFNPQSNLIVSGSFDESVRIWDVR-TGKCLK--TLPA-HSDPVSAVHFN  162 (231)
Q Consensus        99 ~~-~--~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~--~~~~-~~~~v~~~~~~  162 (231)
                      .. +  +.+..+...         ...+.+++|+|+++++++...++.|.+||+. .++...  .+.. ....+..++|+
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s  195 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS  195 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence            62 2  222333211         1247789999999966666678899999998 444321  1122 23367889999


Q ss_pred             CCCCeEEE-EecCCeEEEEeCCC--Ccee--eeeecCCC-----CCeEEEEECCCCCEEEE-EeCCCeEEEEeCC
Q psy4391         163 RDGSLIVS-SSYDGLCRIWDTAS--GQCL--KTLIDDDN-----PPVSFVKFSPNGKYILA-ATLDNTLKLWDSY  226 (231)
Q Consensus       163 ~~~~~l~~-~~~dg~i~v~d~~~--~~~~--~~~~~~~~-----~~i~~~~~s~~g~~l~~-~s~d~~v~vwd~~  226 (231)
                      |||+++++ ...++.+.+|++..  ++..  ..+.....     .....++|+|||++|++ ...++.|.+||..
T Consensus       196 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          196 PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence            99996665 55678999998764  4421  12211111     34678999999998855 4568999999964

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=1.6e-19  Score=139.13  Aligned_cols=200  Identities=13%  Similarity=0.196  Sum_probs=138.2

Q ss_pred             ccccceEEEEECCCCCEEEEEe-CCCcEEEeecC-CCcE--EEEEecc---------cccEEEEEECCCCCEEEEecCCC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAY-DGKF--EKTISGH---------KLGISDVAWSSDSRLLVSGSDDK   91 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~-~~~~--~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~~g   91 (231)
                      .+...+..++|+|+|++|++++ .++.+.+|++. ++..  ...+...         ...+..++|+|+|+.+++...++
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~  162 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD  162 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred             cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence            4566788999999999888877 67899999985 3332  2222211         12377899999999666666788


Q ss_pred             cEEEEeCC-Cceeee--eecC-CCcceEEEEECCCCCEEEE-eecCCcEEEEECCC--Cce--eeeccCCC------CCe
Q psy4391          92 TLKIWELS-SGKCLK--TLKG-HSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVRT--GKC--LKTLPAHS------DPV  156 (231)
Q Consensus        92 ~i~~~d~~-~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~~~--~~~--~~~~~~~~------~~v  156 (231)
                      .|++|++. +++...  .+.. ....+..++|+|+|+++++ ...++.+.+|++..  ++.  +..+....      ..+
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  242 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA  242 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence            99999998 444321  1222 2235678999999996665 45678999999874  432  12222211      347


Q ss_pred             EEEEEcCCCCeEE-EEecCCeEEEEeCCCC---ceeeeeecCCCCCeEEEEECCCCCEEEEEeCC-CeEEEEeC
Q psy4391         157 SAVHFNRDGSLIV-SSSYDGLCRIWDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLWDS  225 (231)
Q Consensus       157 ~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~---~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d-~~v~vwd~  225 (231)
                      ..++|+|||++|+ +...++.|.+|++...   +.+..+.. ....+..++|+|||++|++++.+ +.|.+|+.
T Consensus       243 ~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~  315 (347)
T 3hfq_A          243 AAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-EGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR  315 (347)
T ss_dssp             EEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-SSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             eeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence            8899999999875 4556899999998732   22333322 23345679999999999888765 89999953

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.88  E-value=5.9e-21  Score=160.19  Aligned_cols=194  Identities=12%  Similarity=0.133  Sum_probs=146.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC-----ce
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-----GK  102 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~-----~~  102 (231)
                      ..|.+++|+|+ +.++.+ .++.+++||..+++... +..+...+..++|+|||+.|+++ .++.|++||+.+     ++
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            56999999999 665554 36999999998775543 44445567788999999999885 679999999988     76


Q ss_pred             eeeeecCCCcc--------------eEEEEECCCCCEEEEee---------------------------------cCCcE
Q psy4391         103 CLKTLKGHSNY--------------VFCCNFNPQSNLIVSGS---------------------------------FDESV  135 (231)
Q Consensus       103 ~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~d~~i  135 (231)
                      .......+...              +..+.|+|||+.|++++                                 .+..|
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            65544433332              36789999999999987                                 34679


Q ss_pred             EEEECCCCceeeecc--CCCCCeEEEEEcCCCCeEEEEecCC-----eEEEEeCCCCceeeeeec-CCCC---CeEEEEE
Q psy4391         136 RIWDVRTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSYDG-----LCRIWDTASGQCLKTLID-DDNP---PVSFVKF  204 (231)
Q Consensus       136 ~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~-~~~~---~i~~~~~  204 (231)
                      ++||+.+++......  .+...+..++|+|||+.|++++.++     .|.+||+.+++....+.. ....   .+..++|
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~  317 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF  317 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence            999999887544332  3556789999999999999887775     899999998843433332 1211   2345789


Q ss_pred             CC--CCCEEEEEeCCCeEEEEeC
Q psy4391         205 SP--NGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       205 s~--~g~~l~~~s~d~~v~vwd~  225 (231)
                      +|  ||+++++++.|+.+++|+.
T Consensus       318 sp~~dg~~l~~~~~~g~~~l~~~  340 (706)
T 2z3z_A          318 LPGSNNQFIWQSRRDGWNHLYLY  340 (706)
T ss_dssp             CTTCSSEEEEEECTTSSCEEEEE
T ss_pred             ecCCCCEEEEEEccCCccEEEEE
Confidence            99  9999999999999999974

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=6.7e-20  Score=140.23  Aligned_cols=192  Identities=14%  Similarity=0.189  Sum_probs=141.5

Q ss_pred             EEECCCCCE-EEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC-CCcEEEEeCCCcee-eeeecC
Q psy4391          33 VKFSPNGEW-LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-DKTLKIWELSSGKC-LKTLKG  109 (231)
Q Consensus        33 ~~~~~~~~~-l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~~~d~~~~~~-~~~~~~  109 (231)
                      ..|.+++++ ++++..++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            346666665 5677788999999999988877776555556 9999999997766555 88999999998876 666655


Q ss_pred             CCcceEEEEECCCCCEEEEeecCC---cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCe-EEEEeCCC
Q psy4391         110 HSNYVFCCNFNPQSNLIVSGSFDE---SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGL-CRIWDTAS  184 (231)
Q Consensus       110 ~~~~v~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~v~d~~~  184 (231)
                      +.....++.|+|++++++++..++   .|.+||+.+++.+..+..+ .....++|+|+|++++++ ..++. +.+|++..
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            555444489999999999665553   8999999999887776553 456899999999866655 44577 99999875


Q ss_pred             Cceee----eeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCC
Q psy4391         185 GQCLK----TLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSYP  227 (231)
Q Consensus       185 ~~~~~----~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~~  227 (231)
                      ...+.    ... ........++|+|+|+++++++ .++.|.+||...
T Consensus       161 ~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  207 (331)
T 3u4y_A          161 DGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN  207 (331)
T ss_dssp             TCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            43321    111 2234467899999999776655 588999999743

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=4.1e-20  Score=142.12  Aligned_cols=190  Identities=14%  Similarity=0.091  Sum_probs=143.6

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCcEEEeecCCCcEEEEEecc------cccEEEEEECCCCCEEEEecCC-----------
Q psy4391          29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGH------KLGISDVAWSSDSRLLVSGSDD-----------   90 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~-----------   90 (231)
                      .+..++|+|+|+.++ ++..++.|.+||..+++....+...      ...+..++|+|+|+++++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            577899999999665 4556889999999888777666532      2236788999999999888865           


Q ss_pred             -CcEEEEeCCCceee---eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC-------------
Q psy4391          91 -KTLKIWELSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-------------  153 (231)
Q Consensus        91 -g~i~~~d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------------  153 (231)
                       +.|.+||+.+++..   ..... ...+.+++|+|+++ +++++  +.|.+||+.+++....+..+.             
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  199 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             CCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCcccee
Confidence             89999999875432   23332 23467788999999 55544  349999999887665543221             


Q ss_pred             -------------------------------------------------------CCeEEEEEcC-CCCeEEEEecCCeE
Q psy4391         154 -------------------------------------------------------DPVSAVHFNR-DGSLIVSSSYDGLC  177 (231)
Q Consensus       154 -------------------------------------------------------~~v~~~~~~~-~~~~l~~~~~dg~i  177 (231)
                                                                             ..+..++++| ++++++++  ++.|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v  277 (349)
T 1jmx_B          200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRL  277 (349)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEE
T ss_pred             eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeE
Confidence                                                                   1345677889 99998888  8899


Q ss_pred             EEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      .+||+.+++.+..+....  .+..++|+|+|++|++++.++.|.+||..
T Consensus       278 ~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          278 AKYDLKQRKLIKAANLDH--TYYCVAFDKKGDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             EEEETTTTEEEEEEECSS--CCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred             EEEECccCeEEEEEcCCC--CccceEECCCCCEEEEecCCCeEEEEecc
Confidence            999999988776665332  34679999999999998889999999974

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=1.1e-19  Score=158.68  Aligned_cols=197  Identities=13%  Similarity=0.089  Sum_probs=154.8

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCC----------cEE
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK----------TLK   94 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g----------~i~   94 (231)
                      +|...+..++|+|||++|++++.++.+++||..+++.......+...+..++|+|||++|++++.++          .|+
T Consensus       376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~  455 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  455 (1045)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEE
Confidence            6778899999999999999999999999999998887777767777889999999999998877644          899


Q ss_pred             EEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce-----------------------------
Q psy4391          95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-----------------------------  145 (231)
Q Consensus        95 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----------------------------  145 (231)
                      +||+.+++ ...+..+...+..+.|+|+|+.|++++.++...+|+......                             
T Consensus       456 l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (1045)
T 1k32_A          456 VYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT  534 (1045)
T ss_dssp             EEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGS
T ss_pred             EEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccc
Confidence            99999887 556666777788899999999999998877666665432111                             


Q ss_pred             --------------eeeccCCCCCeEEEEEcCCCCeEEE-------------EecCCeEEEEeCCCCceeeeeecCCCCC
Q psy4391         146 --------------LKTLPAHSDPVSAVHFNRDGSLIVS-------------SSYDGLCRIWDTASGQCLKTLIDDDNPP  198 (231)
Q Consensus       146 --------------~~~~~~~~~~v~~~~~~~~~~~l~~-------------~~~dg~i~v~d~~~~~~~~~~~~~~~~~  198 (231)
                                    +..+..+.+.+..++++|+++++++             ......+.+||+.+++.. .+.    ..
T Consensus       535 ~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~----~~  609 (1045)
T 1k32_A          535 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK----NN  609 (1045)
T ss_dssp             CCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE----EE
T ss_pred             cccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE-Eee----cC
Confidence                          1122334567889999999987775             122457889999888743 232    34


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q psy4391         199 VSFVKFSPNGKYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       199 i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~  228 (231)
                      +..++|||||++|++++.+ .|++||..+.
T Consensus       610 v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~  638 (1045)
T 1k32_A          610 LTDLRLSADRKTVMVRKDD-GKIYTFPLEK  638 (1045)
T ss_dssp             EEEEEECTTSCEEEEEETT-SCEEEEESSC
T ss_pred             cceEEECCCCCEEEEEcCC-cEEEEeCccC
Confidence            6788999999999998865 8999997543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=1.7e-20  Score=157.38  Aligned_cols=199  Identities=18%  Similarity=0.297  Sum_probs=145.3

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCC-----CcEEEEEeccccc--------------EEEEEECCCCCEEE
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-----GKFEKTISGHKLG--------------ISDVAWSSDSRLLV   85 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~   85 (231)
                      .+...+..++|+|||++|+.+ .++.|++|+..+     ++.......+...              +..+.|+|||++|+
T Consensus       118 ~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la  196 (706)
T 2z3z_A          118 DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLA  196 (706)
T ss_dssp             CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEE
T ss_pred             CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEE
Confidence            455678889999999999885 689999999987     6655443333332              47899999999999


Q ss_pred             Eec---------------------------------CCCcEEEEeCCCceeeeeec--CCCcceEEEEECCCCCEEEEee
Q psy4391          86 SGS---------------------------------DDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGS  130 (231)
Q Consensus        86 ~~~---------------------------------~~g~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~  130 (231)
                      +++                                 .+..|++||+++++......  .+...+..+.|+|+|+.|++++
T Consensus       197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  276 (706)
T 2z3z_A          197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAE  276 (706)
T ss_dssp             EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEE
Confidence            887                                 34679999999887554432  3456788999999999999887


Q ss_pred             cCC-----cEEEEECCCCceeeecc--CCC---CCeEEEEEcC--CCCeEEEEecCCeEEEEeCC-CCceeeeeecCCCC
Q psy4391         131 FDE-----SVRIWDVRTGKCLKTLP--AHS---DPVSAVHFNR--DGSLIVSSSYDGLCRIWDTA-SGQCLKTLIDDDNP  197 (231)
Q Consensus       131 ~d~-----~i~v~d~~~~~~~~~~~--~~~---~~v~~~~~~~--~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~  197 (231)
                      .++     .|++||+.+++....+.  .+.   ..+..++|+|  ||++++++..++.+++|++. +++.+..+.. +..
T Consensus       277 ~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~  355 (706)
T 2z3z_A          277 VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK-GEW  355 (706)
T ss_dssp             ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC-SSS
T ss_pred             eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC-CCe
Confidence            765     89999999883333322  111   1245689999  99999999999988888765 4554555433 344


Q ss_pred             CeEE-EEECCCCCEEEEEeCC-C----eEEEEeC
Q psy4391         198 PVSF-VKFSPNGKYILAATLD-N----TLKLWDS  225 (231)
Q Consensus       198 ~i~~-~~~s~~g~~l~~~s~d-~----~v~vwd~  225 (231)
                      .+.. ++|+|+|+.|++++.+ +    .|..||.
T Consensus       356 ~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          356 EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred             EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence            5655 7999999988776654 3    5556664

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=2.8e-18  Score=132.98  Aligned_cols=196  Identities=14%  Similarity=0.195  Sum_probs=133.8

Q ss_pred             cccceEEEEECCCCCEEEEEe-CCCcEEEeecCCCcEEEE----E--ec--------ccccEEEEEECCCCCEEEEec-C
Q psy4391          26 HTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKT----I--SG--------HKLGISDVAWSSDSRLLVSGS-D   89 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~----~--~~--------~~~~v~~~~~~~~~~~l~~~~-~   89 (231)
                      +......+++  ++++|++++ .++.+.+|++........    .  .+        +...+..++|+|+|+++++++ .
T Consensus        98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  175 (361)
T 3scy_A           98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG  175 (361)
T ss_dssp             SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence            3445667777  788777665 578999999864322111    1  11        112357899999999775554 5


Q ss_pred             CCcEEEEeCCCcee------e-------eeecCCCcceEEEEECCCCCEEEEee-cCCcEEEEECCCCce--eeec---c
Q psy4391          90 DKTLKIWELSSGKC------L-------KTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKC--LKTL---P  150 (231)
Q Consensus        90 ~g~i~~~d~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~--~~~~---~  150 (231)
                      ++.+.+|++.....      +       .........+..++|+|+|+++++++ .++.|.+||+.++..  +..+   .
T Consensus       176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~  255 (361)
T 3scy_A          176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT  255 (361)
T ss_dssp             TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS
T ss_pred             CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC
Confidence            78999998875331      1       11122344567899999999887777 689999999987653  2222   2


Q ss_pred             CCCCCeEEEEEcCCCCeEEEEecC--CeEEEEeCC--CCc--eeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEE
Q psy4391         151 AHSDPVSAVHFNRDGSLIVSSSYD--GLCRIWDTA--SGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLW  223 (231)
Q Consensus       151 ~~~~~v~~~~~~~~~~~l~~~~~d--g~i~v~d~~--~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vw  223 (231)
                      .+......++|+|||++|+++..+  +.|.+|++.  +++  .+..+..  ...+..++|+|+|++|++++ .++.|.+|
T Consensus       256 ~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          256 VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence            333457899999999998776654  899999985  444  2223322  33456799999999998887 57899996


Q ss_pred             eC
Q psy4391         224 DS  225 (231)
Q Consensus       224 d~  225 (231)
                      +.
T Consensus       334 ~~  335 (361)
T 3scy_A          334 ER  335 (361)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=4e-18  Score=132.11  Aligned_cols=199  Identities=14%  Similarity=0.222  Sum_probs=136.3

Q ss_pred             cccceEEEEECCCCCEEEEEeCC----CcEEEeecCC--CcEE--EEEecccccEEEEEECCCCCEEEEec-CCCcEEEE
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSAD----KLIKIWGAYD--GKFE--KTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIW   96 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~d----g~i~i~~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~~~   96 (231)
                      +......++|+|+|++|++++.+    +.+.+|++..  +...  .....+......+++  +++++++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            45667789999999999888875    7999998754  4332  223333445667777  778776665 57899999


Q ss_pred             eCCCceeeeee------cC--------CCcceEEEEECCCCCEEEEee-cCCcEEEEECCCCce------e-------ee
Q psy4391          97 ELSSGKCLKTL------KG--------HSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKC------L-------KT  148 (231)
Q Consensus        97 d~~~~~~~~~~------~~--------~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~------~-------~~  148 (231)
                      ++.....+..+      .+        +...+.+++|+|+|+++++++ .++.+.+|++.....      +       ..
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            99753322111      11        122346789999999776655 578999998875431      1       11


Q ss_pred             ccCCCCCeEEEEEcCCCCeEEEEe-cCCeEEEEeCCCCcee--eeeec--CCCCCeEEEEECCCCCEEEEEeCC--CeEE
Q psy4391         149 LPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQCL--KTLID--DDNPPVSFVKFSPNGKYILAATLD--NTLK  221 (231)
Q Consensus       149 ~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~--~~~~~--~~~~~i~~~~~s~~g~~l~~~s~d--~~v~  221 (231)
                      .......+..++|+|+|+++++++ .++.|.+||+.+++..  ..+..  ........++|+|||++|+++..+  +.|.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence            223345678999999999887776 6899999999876542  22211  112335789999999999777655  8999


Q ss_pred             EEeCC
Q psy4391         222 LWDSY  226 (231)
Q Consensus       222 vwd~~  226 (231)
                      +|+..
T Consensus       286 v~~~~  290 (361)
T 3scy_A          286 IFKVD  290 (361)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=3.1e-19  Score=137.20  Aligned_cols=156  Identities=13%  Similarity=0.128  Sum_probs=118.7

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEeccc-ccEEEEEECCCCCEEE-EecCCCcEEEEeCCCceeeeeecC
Q psy4391          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLKTLKG  109 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~~~~~~~~~~~  109 (231)
                      .++++++++++++++.++.|.+||..+++....+..+. ..+..++|+|+++.++ +...++.|.+||+.+++....+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678888899999999999999999888777776433 2467899999998664 556789999999999887766653


Q ss_pred             CC------cceEEEEECCCCCEEEEeecC------------CcEEEEECCCCceee---eccCCCCCeEEEEEcCCCCeE
Q psy4391         110 HS------NYVFCCNFNPQSNLIVSGSFD------------ESVRIWDVRTGKCLK---TLPAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus       110 ~~------~~v~~~~~~~~~~~l~~~~~d------------~~i~v~d~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l  168 (231)
                      ..      ..+..+.|+|+|+++++++.+            +.|.+||+.+++...   ... +...+.+++|+|+++ +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence            22      225678999999999998865            899999998754322   222 233578889999999 5


Q ss_pred             EEEecCCeEEEEeCCCCceeeee
Q psy4391         169 VSSSYDGLCRIWDTASGQCLKTL  191 (231)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~~~~~~  191 (231)
                      ++++  +.|.+||+.+++....+
T Consensus       162 ~~~~--~~i~~~d~~~~~~~~~~  182 (349)
T 1jmx_B          162 YVAG--PDIYKMDVKTGKYTVAL  182 (349)
T ss_dssp             EEES--SSEEEECTTTCCEEEEE
T ss_pred             EEcc--CcEEEEeCCCCceeccc
Confidence            5554  34999999988766544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.85  E-value=5.7e-20  Score=154.58  Aligned_cols=188  Identities=15%  Similarity=0.226  Sum_probs=139.4

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccc---cEEEEEECCCCCEEEEecC---------CCcEEEEeCC
Q psy4391          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSRLLVSGSD---------DKTLKIWELS   99 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------~g~i~~~d~~   99 (231)
                      .+.|+|+|+++++ +.|+.|++|+..+++....+..+..   .+..++|+|||++|++++.         ++.|++||++
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6789999965555 4699999999998887766665543   3889999999999998876         6899999999


Q ss_pred             Cceee--eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc-CCCCCe-----------------EEE
Q psy4391         100 SGKCL--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPV-----------------SAV  159 (231)
Q Consensus       100 ~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v-----------------~~~  159 (231)
                      +++..  ..+.   ..+..+.|+|||+.|+.+. ++.|++||+.+++...... .+...+                 .++
T Consensus        99 ~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           99 NGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            88763  2222   3467789999999999885 7899999998877543321 222222                 479


Q ss_pred             EEcCCCCeEEEEecCC----------------------------------eEEEEeCCCCcee--eeee-----cCCCCC
Q psy4391         160 HFNRDGSLIVSSSYDG----------------------------------LCRIWDTASGQCL--KTLI-----DDDNPP  198 (231)
Q Consensus       160 ~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~~~~--~~~~-----~~~~~~  198 (231)
                      +|+|||++|+.++.|.                                  .+.+||+.+++..  ..+.     ..+...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            9999999999887652                                  7889999887642  1111     124445


Q ss_pred             eEEEEECCCCCEEEEEeCC----CeEEEEe
Q psy4391         199 VSFVKFSPNGKYILAATLD----NTLKLWD  224 (231)
Q Consensus       199 i~~~~~s~~g~~l~~~s~d----~~v~vwd  224 (231)
                      +..++|+||++++++....    ..|.+||
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence            7889999998877764432    2488888

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=7.5e-19  Score=134.34  Aligned_cols=148  Identities=14%  Similarity=0.196  Sum_probs=116.4

Q ss_pred             CEEEEEeCCCcEEEeecCCCcEEEEEecccc--cEEEEEECCCCCEE-EEecCCCcEEEEeCCCceeeeeecCCC-----
Q psy4391          40 EWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKTLKGHS-----  111 (231)
Q Consensus        40 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~~~~~~~~~~-----  111 (231)
                      +++++++.++.|.+||..+++....+.....  .+..++|+|+++.+ +++..++.|.+||+.+++....+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4788899999999999998887777653321  47789999999876 455667899999999988776665321     


Q ss_pred             cceEEEEECCCCCEEEEee------------cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEE
Q psy4391         112 NYVFCCNFNPQSNLIVSGS------------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (231)
Q Consensus       112 ~~v~~~~~~~~~~~l~~~~------------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  179 (231)
                      ..+..+.|+|+++.++++.            .++.|.+||+.+++.+..+.. ...+..++|+|++++++++  ++.+.+
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            1455789999999988886            579999999998887766654 3456788999999988887  688999


Q ss_pred             EeCCCCceeee
Q psy4391         180 WDTASGQCLKT  190 (231)
Q Consensus       180 ~d~~~~~~~~~  190 (231)
                      ||+.+++....
T Consensus       159 ~d~~~~~~~~~  169 (337)
T 1pby_B          159 MDPEAGTLVED  169 (337)
T ss_dssp             EETTTTEEEEE
T ss_pred             EECCCCcEeee
Confidence            99988776543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=1.4e-19  Score=148.88  Aligned_cols=192  Identities=12%  Similarity=0.098  Sum_probs=135.8

Q ss_pred             ccceEEEEECCCCCEEEEEeC-CCcEEEeecCCCcEEEEEeccc-ccEEEEEECCCCCEEEEecC---CCcEEEEeCCC-
Q psy4391          27 TKAVSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSRLLVSGSD---DKTLKIWELSS-  100 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---~g~i~~~d~~~-  100 (231)
                      ...|.+++|+|||++||.++. ||.+++|++.++. ...+..+. ..+..++|+|| +.+++++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE-TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE-EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC-cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            457999999999999998776 9999999985554 44555544 57889999999 76766654   44455554432 


Q ss_pred             --ceeeeeecCCCcceEEEEECCCCCE-EEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC---
Q psy4391         101 --GKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD---  174 (231)
Q Consensus       101 --~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---  174 (231)
                        +... .+.... .....+|+|+++. +++.+.++.+.+||+.+++...... +..  .+++|+|||+++++++.+   
T Consensus        99 ~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~  173 (582)
T 3o4h_A           99 RPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGG  173 (582)
T ss_dssp             STTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETT
T ss_pred             CCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCC
Confidence              2222 332222 2335577887753 3344445556699999887544433 222  788999999999988777   


Q ss_pred             -CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCC--eEEEEeCCC
Q psy4391         175 -GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN--TLKLWDSYP  227 (231)
Q Consensus       175 -g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~--~v~vwd~~~  227 (231)
                       +.|++||+.+++.. .+ ..+...+..++|||||++|+++..++  .|.+||...
T Consensus       174 ~~~i~~~d~~~g~~~-~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~  227 (582)
T 3o4h_A          174 RVSLFTSNLSSGGLR-VF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD  227 (582)
T ss_dssp             EEEEEEEETTTCCCE-EE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred             CeEEEEEcCCCCCce-Ee-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence             78999999888754 33 34445678899999999999888888  899999643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=8.7e-19  Score=136.21  Aligned_cols=198  Identities=11%  Similarity=0.078  Sum_probs=138.5

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecC-CCcEEEEEecc-cccEEEEEECCCCCE--EEEec-------------CC
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGH-KLGISDVAWSSDSRL--LVSGS-------------DD   90 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~~   90 (231)
                      ..+..++|+|+|++|++++.+ .+.+|++. +++........ ...+..++|+|+|++  ++++.             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            467889999999999888877 99999986 66554332211 122445789999994  44553             68


Q ss_pred             CcEEEEeCC-Cceeeeeec----CCCcceEEEEECCCCCEEEEeec-CCcEEEEECC-CCcee--eecc--CCCCCeEEE
Q psy4391          91 KTLKIWELS-SGKCLKTLK----GHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVR-TGKCL--KTLP--AHSDPVSAV  159 (231)
Q Consensus        91 g~i~~~d~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~-~~~~~--~~~~--~~~~~v~~~  159 (231)
                      +.+.+|++. +++....+.    .+...+..+.|+|+|++++++.. ++.|++||+. +++..  ..+.  .+...+..+
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~  198 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV  198 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence            899999997 355433332    23456888999999998887764 6789999998 66542  2232  235568999


Q ss_pred             EEcCCCCeEEEEec-CCeEEEEeCC--CCceee---eeecC-C---C-C-------CeEEEE-ECCCCCEEEEEeCC-C-
Q psy4391         160 HFNRDGSLIVSSSY-DGLCRIWDTA--SGQCLK---TLIDD-D---N-P-------PVSFVK-FSPNGKYILAATLD-N-  218 (231)
Q Consensus       160 ~~~~~~~~l~~~~~-dg~i~v~d~~--~~~~~~---~~~~~-~---~-~-------~i~~~~-~s~~g~~l~~~s~d-~-  218 (231)
                      +|+|+|+++++++. ++.+.+|++.  +++...   .+... .   . .       .+..++ |+|||++|+++..+ + 
T Consensus       199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~  278 (365)
T 1jof_A          199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF  278 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred             EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC
Confidence            99999999887765 6899998764  454321   12111 1   1 1       367899 99999998877643 3 


Q ss_pred             ----eEEEEeCC
Q psy4391         219 ----TLKLWDSY  226 (231)
Q Consensus       219 ----~v~vwd~~  226 (231)
                          .|.+|+..
T Consensus       279 ~~~~~i~v~~~~  290 (365)
T 1jof_A          279 ELQGYIAGFKLR  290 (365)
T ss_dssp             TSCCEEEEEEEC
T ss_pred             CCCCeEEEEEEC
Confidence                89999863

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=9.1e-20  Score=149.94  Aligned_cols=192  Identities=9%  Similarity=0.123  Sum_probs=138.9

Q ss_pred             ccc-cceEEEEECCCCCEEEEEeC---CCcEEEeecCC---CcEEEEEecccccEEEEEECCCCCE-EEEecCCCcEEEE
Q psy4391          25 GHT-KAVSSVKFSPNGEWLASSSA---DKLIKIWGAYD---GKFEKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLKIW   96 (231)
Q Consensus        25 ~h~-~~i~~~~~~~~~~~l~~~~~---dg~i~i~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~g~i~~~   96 (231)
                      .|. ..+..+.|+|| +.++++..   +...++|....   +... .+... ......+|+|+++. +++...++.+.+|
T Consensus        61 ~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~  137 (582)
T 3o4h_A           61 REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALY  137 (582)
T ss_dssp             SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEE
T ss_pred             cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEE
Confidence            444 57899999999 77777665   44556655432   2222 33322 23445688888864 3344445556699


Q ss_pred             eCCCceeeeeecCCCcceEEEEECCCCCEEEEeecC----CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      |+++++.......+.   .++.|+|||+.+++++.+    +.|++||+.+++. ..+..+.+.+..++|+|||+.|+++.
T Consensus       138 d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~SpDG~~l~~~~  213 (582)
T 3o4h_A          138 ALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKVTAGLE  213 (582)
T ss_dssp             EEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCEEEEEEECTTSCEEEEEE
T ss_pred             EccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCccccceECCCCCEEEEcc
Confidence            999887655544332   578899999999988776    7799999988875 45667778889999999999999888


Q ss_pred             cCC--eEEEEeCCCCceeeeeecCCCCCeEEEE--------ECCCCCEEEEEeCCCeEEEEeC
Q psy4391         173 YDG--LCRIWDTASGQCLKTLIDDDNPPVSFVK--------FSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       173 ~dg--~i~v~d~~~~~~~~~~~~~~~~~i~~~~--------~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .++  .|++||+.+++..  ....+...+..++        |+|||.++++++.|+.+++|+.
T Consensus       214 ~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          214 TAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            888  8999999988765  3333333344445        9999988899999999999985

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.83  E-value=3.8e-17  Score=122.61  Aligned_cols=201  Identities=16%  Similarity=0.278  Sum_probs=148.1

Q ss_pred             cccceEEEEE-CCCCCEEEEEeC-CCcEEEeecCCCcEEEEEec-ccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce
Q psy4391          26 HTKAVSSVKF-SPNGEWLASSSA-DKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (231)
Q Consensus        26 h~~~i~~~~~-~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~  102 (231)
                      |...+..+++ .++++++++... ++.|.+|+ .+++....+.. +...+..++++|+++.+++...++.|.+||.. ++
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~  152 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN  152 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence            4456889999 567776666533 78999999 45666655542 33468899999999988887788999999965 44


Q ss_pred             eeeeec--CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC--CCCeEEEEEcCCCCeEEEEecCC-eE
Q psy4391         103 CLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH--SDPVSAVHFNRDGSLIVSSSYDG-LC  177 (231)
Q Consensus       103 ~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg-~i  177 (231)
                      ....+.  .+...+..++++++++++++...++.|++||.. ++.+..+...  ...+..++++++|+++++...++ .|
T Consensus       153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i  231 (286)
T 1q7f_A          153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNL  231 (286)
T ss_dssp             EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred             EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence            444443  233567899999999988887888999999975 4555555433  25688999999999888887776 99


Q ss_pred             EEEeCCCCceeeeeecCCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCCC
Q psy4391         178 RIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLPK  231 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~~~  231 (231)
                      .+||.. ++.+..+..... .....++++|+|+++++ +.|++|++|+..+..|+
T Consensus       232 ~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~pv  284 (286)
T 1q7f_A          232 TIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAPV  284 (286)
T ss_dssp             EEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCCT
T ss_pred             EEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccccc
Confidence            999964 555555543322 23568999999986666 67999999998766553

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.83  E-value=9.4e-19  Score=136.70  Aligned_cols=203  Identities=12%  Similarity=0.041  Sum_probs=143.9

Q ss_pred             eecccccceEE-----EEECCCCCEEEEEeC-CC--cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcE
Q psy4391          22 TLAGHTKAVSS-----VKFSPNGEWLASSSA-DK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTL   93 (231)
Q Consensus        22 ~~~~h~~~i~~-----~~~~~~~~~l~~~~~-dg--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i   93 (231)
                      .+..|......     .+|+|||++|+.++. +|  .|.+|+..+++......++...+..+.|+||++.|+.+..++.+
T Consensus        25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l  104 (388)
T 3pe7_A           25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNL  104 (388)
T ss_dssp             ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEE
T ss_pred             EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeE
Confidence            34455555555     789999999888776 66  47788887777665555554444467899999999999999999


Q ss_pred             EEEeCCCceeeeeecCCCcceEEE--EECCCCCEEEEe----------------------ecCCcEEEEECCCCceeeec
Q psy4391          94 KIWELSSGKCLKTLKGHSNYVFCC--NFNPQSNLIVSG----------------------SFDESVRIWDVRTGKCLKTL  149 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~----------------------~~d~~i~v~d~~~~~~~~~~  149 (231)
                      ++||+.+++.......+...+...  .++|++..++..                      ..+..|.+||+.+++. ..+
T Consensus       105 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l  183 (388)
T 3pe7_A          105 MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-TVI  183 (388)
T ss_dssp             EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-EEE
T ss_pred             EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce-EEe
Confidence            999999987666555544444333  348999988743                      2346799999998864 344


Q ss_pred             cCCCCCeEEEEEcC-CCCeEEEEecC------CeEEEEeCCCCceeeeeecCCC-CCeEEEEECCCCCEEEEEeCC-C--
Q psy4391         150 PAHSDPVSAVHFNR-DGSLIVSSSYD------GLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLD-N--  218 (231)
Q Consensus       150 ~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~s~d-~--  218 (231)
                      ..+...+..++|+| ||+.|+....+      ..|.++|+..++. ..+..... ..+..++|+|||+.|+..+.+ +  
T Consensus       184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  262 (388)
T 3pe7_A          184 LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSP  262 (388)
T ss_dssp             EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCC
T ss_pred             ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCC
Confidence            44566789999999 99988877653      3788888876543 33332221 246678999999988665542 2  


Q ss_pred             --eEEEEeCC
Q psy4391         219 --TLKLWDSY  226 (231)
Q Consensus       219 --~v~vwd~~  226 (231)
                        .|.+||..
T Consensus       263 ~~~l~~~d~~  272 (388)
T 3pe7_A          263 DRFIYSADPE  272 (388)
T ss_dssp             CEEEEEECTT
T ss_pred             cceEEEEecC
Confidence              39999964

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=6.9e-20  Score=154.06  Aligned_cols=193  Identities=14%  Similarity=0.178  Sum_probs=136.6

Q ss_pred             ceEEEEECCCCCEEEEEeC---------CCcEEEeecCCCcEE--EEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          29 AVSSVKFSPNGEWLASSSA---------DKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~---------dg~i~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      .+.+++|||||++|+.++.         ++.|++||..+++..  ..+   ...+..++|+|||+.|+.+. ++.|++|+
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~  136 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ  136 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence            3889999999999988765         689999999877541  122   24577899999999998885 77999999


Q ss_pred             CCCceeeeeec-CCCcce-----------------EEEEECCCCCEEEEeecCC--------------------------
Q psy4391          98 LSSGKCLKTLK-GHSNYV-----------------FCCNFNPQSNLIVSGSFDE--------------------------  133 (231)
Q Consensus        98 ~~~~~~~~~~~-~~~~~v-----------------~~~~~~~~~~~l~~~~~d~--------------------------  133 (231)
                      +.+++..+... ++...+                 ..+.|+|||+.|++++.|.                          
T Consensus       137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~  216 (719)
T 1z68_A          137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK  216 (719)
T ss_dssp             STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred             CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence            98877544332 211112                 3789999999999987652                          


Q ss_pred             --------cEEEEECCCCcee--------eeccCCCCCeEEEEEcCCCCeEEEEecC----CeEEEEe----CCCCceee
Q psy4391         134 --------SVRIWDVRTGKCL--------KTLPAHSDPVSAVHFNRDGSLIVSSSYD----GLCRIWD----TASGQCLK  189 (231)
Q Consensus       134 --------~i~v~d~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~v~d----~~~~~~~~  189 (231)
                              .|++||+.+++..        ..+..+...+..++|+||++++++....    ..|.+||    +.+++...
T Consensus       217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~  296 (719)
T 1z68_A          217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK  296 (719)
T ss_dssp             TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred             CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence                    6889999887642        1233566788999999998777664332    2588899    87776544


Q ss_pred             eee---cCCCCCeE-----EEEECCCCCEEEE--EeCCC--eEEEEeC
Q psy4391         190 TLI---DDDNPPVS-----FVKFSPNGKYILA--ATLDN--TLKLWDS  225 (231)
Q Consensus       190 ~~~---~~~~~~i~-----~~~~s~~g~~l~~--~s~d~--~v~vwd~  225 (231)
                      .+.   ..+...+.     .++|+|||+.++.  ...+|  .|.+||.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~  344 (719)
T 1z68_A          297 TQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKD  344 (719)
T ss_dssp             GGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESS
T ss_pred             EEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEEC
Confidence            332   23333333     6789999996655  43455  5666664

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=1.1e-18  Score=147.35  Aligned_cols=196  Identities=12%  Similarity=0.152  Sum_probs=143.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEeccccc-----EEEEEECCCCCEEEEecCC---------CcE
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-----ISDVAWSSDSRLLVSGSDD---------KTL   93 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~~---------g~i   93 (231)
                      .....+.|+|+|++++++  ||.|++|+..+++....+.++...     ..++.|+|||++|+.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            345689999999988886  999999999998877777665432     2347899999999988875         567


Q ss_pred             EEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc-CCCCCe----------------
Q psy4391          94 KIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPV----------------  156 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v----------------  156 (231)
                      .+||+.+++... +..+...+....|+|||+.||.+. ++.|++||+.+++...... .+...+                
T Consensus        95 ~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~  172 (740)
T 4a5s_A           95 DIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (740)
T ss_dssp             EEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             EEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence            799999988643 555667788999999999999884 6899999998876543221 222222                


Q ss_pred             -EEEEEcCCCCeEEEEecCC------------------------------------eEEEEeCCC---Cc--eeeeeec-
Q psy4391         157 -SAVHFNRDGSLIVSSSYDG------------------------------------LCRIWDTAS---GQ--CLKTLID-  193 (231)
Q Consensus       157 -~~~~~~~~~~~l~~~~~dg------------------------------------~i~v~d~~~---~~--~~~~~~~-  193 (231)
                       ..+.|+|||+.|+..+.|.                                    .|.+||+.+   ++  ....+.. 
T Consensus       173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence             3489999999998875321                                    578899988   63  1222221 


Q ss_pred             ----CCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeCCC
Q psy4391         194 ----DDNPPVSFVKFSPNGKYILAATL----DNTLKLWDSYP  227 (231)
Q Consensus       194 ----~~~~~i~~~~~s~~g~~l~~~s~----d~~v~vwd~~~  227 (231)
                          .+...+..++|+|||+.++....    +..|.+||...
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t  294 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence                13445778999999997766543    23799999643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=3.2e-18  Score=133.06  Aligned_cols=197  Identities=14%  Similarity=0.136  Sum_probs=136.5

Q ss_pred             eEEEEECCCCCE--EEEEe-------------CCCcEEEeecC-CCcEEEEEe----cccccEEEEEECCCCCEEEEec-
Q psy4391          30 VSSVKFSPNGEW--LASSS-------------ADKLIKIWGAY-DGKFEKTIS----GHKLGISDVAWSSDSRLLVSGS-   88 (231)
Q Consensus        30 i~~~~~~~~~~~--l~~~~-------------~dg~i~i~~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-   88 (231)
                      ...++|+|+|++  ++++.             .+|.+.+|++. +++....+.    .+...+..++|+|+|++++++. 
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~  164 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence            455789999994  44543             68899999986 455544333    1345688999999999887765 


Q ss_pred             CCCcEEEEeCC-Cceee--eeec--CCCcceEEEEECCCCCEEEEeec-CCcEEEEECC--CCcee------eeccCC--
Q psy4391          89 DDKTLKIWELS-SGKCL--KTLK--GHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVR--TGKCL------KTLPAH--  152 (231)
Q Consensus        89 ~~g~i~~~d~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~--~~~~~------~~~~~~--  152 (231)
                      .++.|++|+++ +++..  ..+.  .+...+..++|+|+|+++++++. ++.+.+|++.  +++..      ..+...  
T Consensus       165 ~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  244 (365)
T 1jof_A          165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP  244 (365)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred             CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence            36799999998 66542  2233  22456788999999999888775 6789999765  45432      122211  


Q ss_pred             --CC------CeEEEE-EcCCCCeEEEEecCC------eEEEEeCC-CCceeee--eecCCCCCeEEEEECC---CCCEE
Q psy4391         153 --SD------PVSAVH-FNRDGSLIVSSSYDG------LCRIWDTA-SGQCLKT--LIDDDNPPVSFVKFSP---NGKYI  211 (231)
Q Consensus       153 --~~------~v~~~~-~~~~~~~l~~~~~dg------~i~v~d~~-~~~~~~~--~~~~~~~~i~~~~~s~---~g~~l  211 (231)
                        ..      .+..++ |+|||++|+++..+.      .|.+|++. +++....  ...........++|+|   ||++|
T Consensus       245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l  324 (365)
T 1jof_A          245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWM  324 (365)
T ss_dssp             CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEE
T ss_pred             CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEE
Confidence              11      478899 999999988766432      89999986 5554321  1211222234578999   89999


Q ss_pred             EEEeCC-CeEEEEeCC
Q psy4391         212 LAATLD-NTLKLWDSY  226 (231)
Q Consensus       212 ~~~s~d-~~v~vwd~~  226 (231)
                      +++..+ +.|.+|+..
T Consensus       325 ~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          325 AITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEECSSSCEEEEEEEE
T ss_pred             EEEEcCCCeEEEEEEc
Confidence            999875 899999864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=7e-17  Score=123.77  Aligned_cols=200  Identities=12%  Similarity=0.110  Sum_probs=147.7

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc-EEEEEe---------cccccEEEEEECC-CCCEEEEec-CCCcE
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTIS---------GHKLGISDVAWSS-DSRLLVSGS-DDKTL   93 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~~~~-~~g~i   93 (231)
                      +-.....++++++|+++++...++.|++|+..... ....+.         .+......++++| +++.+++.+ .++.|
T Consensus        89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred             ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence            34578899999999988888888999999975432 333442         2233578999999 788777775 68999


Q ss_pred             EEEeCCCceeeeeecC----------CCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCceeeecc--CCCCCeEEEE
Q psy4391          94 KIWELSSGKCLKTLKG----------HSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLP--AHSDPVSAVH  160 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~  160 (231)
                      ++|+. +++.+..+..          +-.....++++|+ +.++++...++.|++||..+++.+..+.  .+...+.+++
T Consensus       169 ~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          169 VQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             EEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred             EEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence            99994 4555555531          1233778999998 7777777888999999999888777763  3456788999


Q ss_pred             EcC------CCCeEEEEecCCeEEEEeCCCCceeeeee--cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         161 FNR------DGSLIVSSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       161 ~~~------~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ++|      +++.+++...+..+.+||+.+++.+..+.  .........++++|+|..+++...+++|++|+..
T Consensus       248 ~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             ecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            999      33333333345589999999998777653  1233446789999999888888889999999963

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.79  E-value=6.6e-16  Score=115.82  Aligned_cols=196  Identities=16%  Similarity=0.267  Sum_probs=145.6

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec------ccccEEEEEE-CCCCCEEEEecC-CCcEEEEe
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG------HKLGISDVAW-SSDSRLLVSGSD-DKTLKIWE   97 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~------~~~~v~~~~~-~~~~~~l~~~~~-~g~i~~~d   97 (231)
                      +-....+++++++|+++++...++.|.+|+.. ++....+..      +...+..+++ .++++.+++... ++.|.+||
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            44678999999999988887888999999976 555555532      2346788999 567776666543 78999999


Q ss_pred             CCCceeeeeecC-CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc--CCCCCeEEEEEcCCCCeEEEEecC
Q psy4391          98 LSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus        98 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                       .+++.+..+.. +...+..++++|+++++++...++.|.+||.. ++.+..+.  .+...+..++++|+++++++...+
T Consensus       107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  184 (286)
T 1q7f_A          107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  184 (286)
T ss_dssp             -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence             45565555532 33567889999999988887788999999965 45444443  334568899999999988887889


Q ss_pred             CeEEEEeCCCCceeeeeecCC-CCCeEEEEECCCCCEEEEEeCCC-eEEEEeC
Q psy4391         175 GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDN-TLKLWDS  225 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~s~d~-~v~vwd~  225 (231)
                      +.|.+||.. ++.+..+.... ......++++++|+++++...++ .|.+||.
T Consensus       185 ~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          185 HCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             TEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             CEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence            999999985 44444443221 24567899999999888887776 9999995

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=1e-17  Score=141.41  Aligned_cols=194  Identities=11%  Similarity=0.120  Sum_probs=133.5

Q ss_pred             EEEEECCCCCEEEEEeCC---------CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          31 SSVKFSPNGEWLASSSAD---------KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~d---------g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      ..+.|||||++|+.++.+         +.+.+||..+++.. .+..+...+...+|+|||+.||.+. ++.|++|++.++
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~  142 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL  142 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence            447899999999887765         56679999887643 4555666789999999999998884 689999999887


Q ss_pred             eeeeeec-CCCcce-----------------EEEEECCCCCEEEEeecCC------------------------------
Q psy4391         102 KCLKTLK-GHSNYV-----------------FCCNFNPQSNLIVSGSFDE------------------------------  133 (231)
Q Consensus       102 ~~~~~~~-~~~~~v-----------------~~~~~~~~~~~l~~~~~d~------------------------------  133 (231)
                      +..+... ++...+                 ..+.|+|||+.|+..+.|.                              
T Consensus       143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred             ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence            6543222 211112                 2478999999998875321                              


Q ss_pred             ------cEEEEECCC---Cc--eeeecc------CCCCCeEEEEEcCCCCeEEEEec----CCeEEEEeCCCCc----ee
Q psy4391         134 ------SVRIWDVRT---GK--CLKTLP------AHSDPVSAVHFNRDGSLIVSSSY----DGLCRIWDTASGQ----CL  188 (231)
Q Consensus       134 ------~i~v~d~~~---~~--~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~----~~  188 (231)
                            .|++||+.+   ++  ....+.      .+...+..++|+|||+.++....    +..|.+||+.+++    +.
T Consensus       223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~  302 (740)
T 4a5s_A          223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL  302 (740)
T ss_dssp             SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred             CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence                  478899988   63  122332      25667899999999997665432    2379999998876    22


Q ss_pred             --eee-ecCCCCCe-----EEEEECCCCCEEE-EEeC-CC--eEEEEeCC
Q psy4391         189 --KTL-IDDDNPPV-----SFVKFSPNGKYIL-AATL-DN--TLKLWDSY  226 (231)
Q Consensus       189 --~~~-~~~~~~~i-----~~~~~s~~g~~l~-~~s~-d~--~v~vwd~~  226 (231)
                        ..+ ...+...+     ..++|+|||+.++ ..+. +|  .|.+||..
T Consensus       303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~  352 (740)
T 4a5s_A          303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID  352 (740)
T ss_dssp             GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred             EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence              111 12222222     2578999999877 6653 44  67777753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=2.4e-16  Score=120.79  Aligned_cols=198  Identities=13%  Similarity=0.117  Sum_probs=145.5

Q ss_pred             ccceEEEEECCCCCEEEEEeCC------------------------CcEEEeecCCCcEEEEEe-cccccEEEEEECCCC
Q psy4391          27 TKAVSSVKFSPNGEWLASSSAD------------------------KLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDS   81 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~d------------------------g~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~   81 (231)
                      -+.+.+++++++|+++++...+                        +.|.+||..+++....+. .+......++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4679999999999988887666                        479999998887766554 333468899999999


Q ss_pred             CEEEEecCCCcEEEEeCCCce-eeeee---------cCCCcceEEEEECC-CCCEEEEee-cCCcEEEEECCCCceeeec
Q psy4391          82 RLLVSGSDDKTLKIWELSSGK-CLKTL---------KGHSNYVFCCNFNP-QSNLIVSGS-FDESVRIWDVRTGKCLKTL  149 (231)
Q Consensus        82 ~~l~~~~~~g~i~~~d~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~v~d~~~~~~~~~~  149 (231)
                      +.+++...++.|++|+..... .+..+         ..+......++++| ++.++++.+ .++.|++|| ..++.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999986542 34444         22334678899999 788888876 689999999 456665555


Q ss_pred             cCC----------CCCeEEEEEcCC-CCeEEEEecCCeEEEEeCCCCceeeeeec-CCCCCeEEEEECC------CCCEE
Q psy4391         150 PAH----------SDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSP------NGKYI  211 (231)
Q Consensus       150 ~~~----------~~~v~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~~i~~~~~s~------~g~~l  211 (231)
                      ...          -.....++++|+ +.++++...++.|++||..+++.+..+.. .....+..++++|      +|+..
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~  261 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY  261 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence            322          124789999998 77777777889999999998887776643 2334567888999      33322


Q ss_pred             EEEeCCCeEEEEeC
Q psy4391         212 LAATLDNTLKLWDS  225 (231)
Q Consensus       212 ~~~s~d~~v~vwd~  225 (231)
                      ++...++.|.+||.
T Consensus       262 v~~~~~~~v~~~~~  275 (329)
T 3fvz_A          262 FGDQEPVQGFVMNF  275 (329)
T ss_dssp             TTCSCCCCEEEEET
T ss_pred             eccCCCcEEEEEEc
Confidence            33333458999985

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.78  E-value=1.4e-17  Score=138.82  Aligned_cols=190  Identities=16%  Similarity=0.167  Sum_probs=135.3

Q ss_pred             EEEEC--CCCCE-EEEEeC-CCcEEEeecC--CCcEEEEEec-----ccccEEEEEECCCCCEEEEecCC----------
Q psy4391          32 SVKFS--PNGEW-LASSSA-DKLIKIWGAY--DGKFEKTISG-----HKLGISDVAWSSDSRLLVSGSDD----------   90 (231)
Q Consensus        32 ~~~~~--~~~~~-l~~~~~-dg~i~i~~~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~----------   90 (231)
                      ...|+  |||+. |+.+.. +..|.+++..  .......+..     +...+..++|+|||+.|++++.+          
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            55565  99998 776543 5566666664  2033444544     45678899999999999988776          


Q ss_pred             CcEEEEeCCC------ceeeeeec-CCCcceEEEEECCCCCEEEEeecCC--------cEEEEECC-CC---ceeeeccC
Q psy4391          91 KTLKIWELSS------GKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDE--------SVRIWDVR-TG---KCLKTLPA  151 (231)
Q Consensus        91 g~i~~~d~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~--------~i~v~d~~-~~---~~~~~~~~  151 (231)
                      ..|++||+.+      ++.. .+. .+...+..+.|+|||+.|+..+.++        .|++||+. ++   +.......
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~  239 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG  239 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             eEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC
Confidence            5899999988      5543 444 4455677789999999999887553        79999998 56   33333334


Q ss_pred             CCCCeEEEEEcCCCCeEEEEecCC--eEEEEeCCCCceeeeeecCCCC--------CeEEEEECCCCCEEEEEeCCCeEE
Q psy4391         152 HSDPVSAVHFNRDGSLIVSSSYDG--LCRIWDTASGQCLKTLIDDDNP--------PVSFVKFSPNGKYILAATLDNTLK  221 (231)
Q Consensus       152 ~~~~v~~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~--------~i~~~~~s~~g~~l~~~s~d~~v~  221 (231)
                      +...+..+.|+|||++++++..++  .|.+||+.+++..... ..+..        .+..++|+|+++++++++. +.++
T Consensus       240 ~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~  317 (662)
T 3azo_A          240 PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC-RREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAV  317 (662)
T ss_dssp             TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESS-CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCE
T ss_pred             CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecc-cccccccCccccccCceEeEeCCCEEEEEEEc-CccE
Confidence            467889999999999777887788  6777787666543322 22111        1456889999999999988 9999


Q ss_pred             EEe
Q psy4391         222 LWD  224 (231)
Q Consensus       222 vwd  224 (231)
                      +|.
T Consensus       318 l~~  320 (662)
T 3azo_A          318 LGI  320 (662)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            993

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.78  E-value=2.2e-17  Score=137.59  Aligned_cols=202  Identities=13%  Similarity=0.108  Sum_probs=144.8

Q ss_pred             eecccccceEEEEECCCCCEEEEE--eCCCcEEEeecCCCcEEEEEecccccEE---------EEEEC--CCCCE-EEEe
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASS--SADKLIKIWGAYDGKFEKTISGHKLGIS---------DVAWS--SDSRL-LVSG   87 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~--~~dg~i~i~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~   87 (231)
                      .+.+|...+..++|++++-.++..  +.++...+|....+.....+..+...+.         ...|+  |||+. |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            345788999999999876566665  5578889998654555566665554544         55565  99998 7665


Q ss_pred             cC-CCcEEEEeCC--C-ceeeeeecC-----CCcceEEEEECCCCCEEEEeecC----------CcEEEEECCC------
Q psy4391          88 SD-DKTLKIWELS--S-GKCLKTLKG-----HSNYVFCCNFNPQSNLIVSGSFD----------ESVRIWDVRT------  142 (231)
Q Consensus        88 ~~-~g~i~~~d~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------~~i~v~d~~~------  142 (231)
                      +. +..|+++++.  + ++ ...+..     +...+..++|+|||+.|++++.+          ..|++||+.+      
T Consensus        98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  176 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR  176 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred             ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence            54 5677777776  3 43 334444     45667889999999999988876          5799999987      


Q ss_pred             Cceeeecc-CCCCCeEEEEEcCCCCeEEEEecC--------CeEEEEeCC-CCc--eeeeeecCCCCCeEEEEECCCCCE
Q psy4391         143 GKCLKTLP-AHSDPVSAVHFNRDGSLIVSSSYD--------GLCRIWDTA-SGQ--CLKTLIDDDNPPVSFVKFSPNGKY  210 (231)
Q Consensus       143 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~v~d~~-~~~--~~~~~~~~~~~~i~~~~~s~~g~~  210 (231)
                      ++ ...+. .+...+..++|+|||++|+.++.+        ..|.+||+. +++  ....+...+...+..++|+|||++
T Consensus       177 ~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          177 SA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             Cc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence            44 34444 555667788999999999887755        379999998 561  334444443456788999999997


Q ss_pred             EEEEeCCC--eEEEEeC
Q psy4391         211 ILAATLDN--TLKLWDS  225 (231)
Q Consensus       211 l~~~s~d~--~v~vwd~  225 (231)
                      ++++..++  .|.+||.
T Consensus       256 ~~~~~~~~~~~l~~~~~  272 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDP  272 (662)
T ss_dssp             EEEECTTSSCEEEEECT
T ss_pred             EEEECCCCCeEEEEEEC
Confidence            77777788  5666653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=3.1e-16  Score=121.72  Aligned_cols=191  Identities=14%  Similarity=0.133  Sum_probs=127.3

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEeecCCCcEEEEEecc------cccEEEEEECCCCCEEEEecC--CCcE
Q psy4391          32 SVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGH------KLGISDVAWSSDSRLLVSGSD--DKTL   93 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--~g~i   93 (231)
                      .++|+|+|+++++++          .++.|.+||..+.+....+...      ......++++|+|++++++..  ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            899999999998876          2567999999888877776532      123556899999999988764  5789


Q ss_pred             EEEeCCCceeeee-ecCCCcceEEEEECCCC-CEEEEeecCCc-------------------------------------
Q psy4391          94 KIWELSSGKCLKT-LKGHSNYVFCCNFNPQS-NLIVSGSFDES-------------------------------------  134 (231)
Q Consensus        94 ~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~-------------------------------------  134 (231)
                      .+||+++++.+.. +.....  ..+.+.|++ ..+++.+.||.                                     
T Consensus       134 ~v~d~~~~~~~~~~i~~~~~--~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g  211 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAGC--WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDK  211 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTTE--EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECS
T ss_pred             EEEECCCCcEEEEEecCCCc--ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccC
Confidence            9999999887766 442211  112223322 23333333333                                     


Q ss_pred             -----------EEEEECCCCce--eeeccC----------CCCCeEEEEEcCCCCeEEEEec-----------CCeEEEE
Q psy4391         135 -----------VRIWDVRTGKC--LKTLPA----------HSDPVSAVHFNRDGSLIVSSSY-----------DGLCRIW  180 (231)
Q Consensus       135 -----------i~v~d~~~~~~--~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~v~  180 (231)
                                 +.++|+..+..  ...+..          .......++|+|+++.++++..           .+.|.+|
T Consensus       212 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~vi  291 (361)
T 2oiz_A          212 DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVM  291 (361)
T ss_dssp             SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEE
T ss_pred             CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEE
Confidence                       44444432211  000000          0011112688999888776643           3489999


Q ss_pred             eCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q psy4391         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       181 d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~  228 (231)
                      |+.+++.+.++....   ...++|+|||++|+++.. +.|.+||....
T Consensus       292 D~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          292 DTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             ETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             ECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            999999888876554   578999999999998886 99999997553

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.77  E-value=4.3e-16  Score=117.50  Aligned_cols=195  Identities=12%  Similarity=0.057  Sum_probs=141.0

Q ss_pred             ccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          25 GHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      .+.....+++|+|+|+ +++++..++.|..|+..++  ...+..+...+..++++++|+++++...++.|.+||.++++.
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW  102 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence            4556678999999998 7778888899999998776  455555666789999999999888777778999999977765


Q ss_pred             eeeecCC----CcceEEEEECCCCCEEEE----ee-------------cCCcEEEEECCCCceeeeccCCCCCeEEEEEc
Q psy4391         104 LKTLKGH----SNYVFCCNFNPQSNLIVS----GS-------------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN  162 (231)
Q Consensus       104 ~~~~~~~----~~~v~~~~~~~~~~~l~~----~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~  162 (231)
                      .......    ...+..++++|+|+++++    |.             ..+.|..++.. ++ +..+..+......++|+
T Consensus       103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s  180 (296)
T 3e5z_A          103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFL  180 (296)
T ss_dssp             EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEEC
T ss_pred             EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEEC
Confidence            4332211    123456889999998887    33             13456666665 43 33344445567899999


Q ss_pred             CCCCeEEEEecCCeEEEEeCC-CCce---eeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         163 RDGSLIVSSSYDGLCRIWDTA-SGQC---LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       163 ~~~~~l~~~~~dg~i~v~d~~-~~~~---~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      |+++.+++.+.++.|.+||+. +++.   ...+ .........++++++|+++++.  ++.|.+||..
T Consensus       181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            999988777778999999986 4443   2222 2222334568999999866655  8899999963

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.76  E-value=3.5e-15  Score=114.19  Aligned_cols=203  Identities=7%  Similarity=0.055  Sum_probs=144.4

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC----CcEEEEe
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD----KTLKIWE   97 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----g~i~~~d   97 (231)
                      .+..+...+.+++|+++|++++++..++.|.+|+..+++.......+...+..++++|+++.+++...+    +.|.+||
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence            344566678999999999987888888999999988776655443445679999999999887777666    6899999


Q ss_pred             CCCceeeeeec--CCCcceEEEEECCCCCEEEEeec------CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEE
Q psy4391          98 LSSGKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSF------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus        98 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  169 (231)
                      .+++.....+.  .....+..+.++|+++++++...      .+.|..+|..+++... +......+..++|+|+++.++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~  197 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLW  197 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEE
Confidence            98766443332  23356888999999988876653      3567777766554322 222234578899999998665


Q ss_pred             -EEecCCeEEEEeCCC-Cceeeee----e-c-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         170 -SSSYDGLCRIWDTAS-GQCLKTL----I-D-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       170 -~~~~dg~i~v~d~~~-~~~~~~~----~-~-~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                       +...++.|.+||+.+ ++.+..+    . . ........++++++|+++++...++.|.+||.
T Consensus       198 v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          198 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             EEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence             445678999999863 3322111    1 1 11124577999999998888777899999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.76  E-value=4.6e-16  Score=130.82  Aligned_cols=198  Identities=15%  Similarity=0.153  Sum_probs=139.1

Q ss_pred             cccceEEEEECCCCCEEEEEeCC-C----cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCc--------
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSAD-K----LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKT--------   92 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~d-g----~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~--------   92 (231)
                      |...+..++|||||++|+.+..+ |    .|++||+.+++....... ...+..++|+|||+.|+.+..++.        
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccc
Confidence            44468899999999999865443 3    899999988876553322 223567899999999998877665        


Q ss_pred             --------EEEEeCCCcee--eeeec--CCCcceEEEEECCCCCEEEEeec-----CCcEEEEECCC------Cc-eeee
Q psy4391          93 --------LKIWELSSGKC--LKTLK--GHSNYVFCCNFNPQSNLIVSGSF-----DESVRIWDVRT------GK-CLKT  148 (231)
Q Consensus        93 --------i~~~d~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~v~d~~~------~~-~~~~  148 (231)
                              |++|++.+++.  .....  .+...+..+.|+|+|++|+..+.     +..|++||+.+      +. ....
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                    99999987652  12222  23445678899999999988765     56799999986      43 3455


Q ss_pred             ccCCCCCeEEEEEcCCCCeEEEEecC----CeEEEEeCCCCc--eeeeeecCCC-CCeEEEEECCCCCEEEEEeCCCe--
Q psy4391         149 LPAHSDPVSAVHFNRDGSLIVSSSYD----GLCRIWDTASGQ--CLKTLIDDDN-PPVSFVKFSPNGKYILAATLDNT--  219 (231)
Q Consensus       149 ~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~--~~~~~~~~~~-~~i~~~~~s~~g~~l~~~s~d~~--  219 (231)
                      +..+...+.. .|+|+|+.|+..+..    +.|.+||+.++.  ....+..+.. ..+..++|++++.++++...|+.  
T Consensus       282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence            5555555544 488899887766543    369999998764  2344443333 35777889888888888888885  


Q ss_pred             EEEEeC
Q psy4391         220 LKLWDS  225 (231)
Q Consensus       220 v~vwd~  225 (231)
                      |.+||.
T Consensus       361 l~~~~~  366 (710)
T 2xdw_A          361 LQLHDL  366 (710)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            555554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=7.1e-18  Score=131.82  Aligned_cols=194  Identities=9%  Similarity=-0.009  Sum_probs=133.0

Q ss_pred             eEEEEECCCCCEEEEEeCC-C--cEEEeecCCCcEEEEEecccccE-EEEEECCCCCEEEEecCCCcEEEEeCCCceeee
Q psy4391          30 VSSVKFSPNGEWLASSSAD-K--LIKIWGAYDGKFEKTISGHKLGI-SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~d-g--~i~i~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      +..++|+|||++|+..... +  .+.+|+..+++... +..+.... ..+.|+|+|+.|+.++.++.|++||+.+++...
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            6788999999998766443 3  67788887765443 33322222 236899999999999988899999999877655


Q ss_pred             eecCCCcceEE-------------------EEECCCCCEEEEe-----ecCCcEEEEECCCCceeeeccCCCCCeEEEEE
Q psy4391         106 TLKGHSNYVFC-------------------CNFNPQSNLIVSG-----SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF  161 (231)
Q Consensus       106 ~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  161 (231)
                      ....+......                   +.++|+++.++..     ..+..|.+||+.+++..... .+...+..+.|
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~  195 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIY  195 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceE
Confidence            44433332222                   3467777766654     35567999999987754433 45567889999


Q ss_pred             cC-CCCeEEEEecC------CeEEEEeCCCCceeeeeecCC-CCCeEEEEECCCCCEEEEEeCC-----CeEEEEeCC
Q psy4391         162 NR-DGSLIVSSSYD------GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDSY  226 (231)
Q Consensus       162 ~~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~s~d-----~~v~vwd~~  226 (231)
                      +| +++.++..+.+      ..|.+||+..++.. .+.... ...+..++|+|+|++|+.++.+     +.|.+||..
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  272 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE  272 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence            99 78877765543      36888898765432 222221 2246778999999988877654     449999964

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.75  E-value=3.7e-16  Score=120.24  Aligned_cols=182  Identities=18%  Similarity=0.201  Sum_probs=124.6

Q ss_pred             cceEEEEECCCCCEEEEEeCC---C--cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC------------
Q psy4391          28 KAVSSVKFSPNGEWLASSSAD---K--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD------------   90 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~d---g--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------------   90 (231)
                      ..+..+.|+|||++|+..+.+   +  .|.+|+..+++........ . +..++|+|+|+.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            457789999999998876543   3  3777787776654444333 3 8899999999998877632            


Q ss_pred             ---------------CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCC-------cEEEEECCCCceeee
Q psy4391          91 ---------------KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE-------SVRIWDVRTGKCLKT  148 (231)
Q Consensus        91 ---------------g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------~i~v~d~~~~~~~~~  148 (231)
                                     ..|++||+.+++....+.. . .+..+.|+|+| +++++..++       ...+|.+.+++. ..
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~  212 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK  212 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence                           5789999988876344443 3 66788999999 777775542       334444334443 33


Q ss_pred             ccCCCCCeEEEEEcCCCCeEEEEecC--------CeEEEEeCCCCceeeeeecCCCCCeEE-EEECCCCCEEEEEeCCCe
Q psy4391         149 LPAHSDPVSAVHFNRDGSLIVSSSYD--------GLCRIWDTASGQCLKTLIDDDNPPVSF-VKFSPNGKYILAATLDNT  219 (231)
Q Consensus       149 ~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~~i~~-~~~s~~g~~l~~~s~d~~  219 (231)
                      +..+ ..+..+  +|+|+.|+.++.+        ..|.+||  +++. ..+.......+.. +.|+ +| ++++++.++.
T Consensus       213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~  284 (347)
T 2gop_A          213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS  284 (347)
T ss_dssp             EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEEEEETTE
T ss_pred             eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEEEecCCc
Confidence            3333 444444  9999998877644        4688888  4443 3333343455665 8899 88 8888899999


Q ss_pred             EEEE
Q psy4391         220 LKLW  223 (231)
Q Consensus       220 v~vw  223 (231)
                      +++|
T Consensus       285 ~~l~  288 (347)
T 2gop_A          285 VNLY  288 (347)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.74  E-value=2e-15  Score=112.13  Aligned_cols=197  Identities=8%  Similarity=-0.036  Sum_probs=141.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe-cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      ..+.+++++++|+++++.. ++.|.+|+....... .+. .....+..++++++++.+++...++.|.+|+..+......
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence            4677899999999666555 889999997654432 222 2235688999999998777777788999997655433222


Q ss_pred             ecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCc
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ  186 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~  186 (231)
                      .......+..++++++++++++...++.|.+||............+...+..++++++|.++++...++.|.+||.....
T Consensus       145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            22222346678999999977777778899999988765443333333568899999999777777778899999987654


Q ss_pred             eeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         187 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       187 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ... ...........++++++|+.+++...+++|++|+...
T Consensus       225 ~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          225 STV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             CEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             cee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            322 2222224568899999999888888899999999744

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=6.7e-16  Score=120.49  Aligned_cols=200  Identities=13%  Similarity=0.039  Sum_probs=133.7

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEE--EECCCCCEEEEe---------------
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSRLLVSG---------------   87 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~---------------   87 (231)
                      ++...+..+.|+|||+.|+.+..++.+++|+..+++.......+...+...  .++|+++.++..               
T Consensus        78 ~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~  157 (388)
T 3pe7_A           78 GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK  157 (388)
T ss_dssp             SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred             CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence            344444467899999999999989999999999887666555444434333  348999988642               


Q ss_pred             -------cCCCcEEEEeCCCceeeeeecCCCcceEEEEECC-CCCEEEEeecC------CcEEEEECCCCceeeeccCCC
Q psy4391          88 -------SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD------ESVRIWDVRTGKCLKTLPAHS  153 (231)
Q Consensus        88 -------~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~  153 (231)
                             ..+..|.+||+.+++..... .+...+..+.|+| +|+.|+....+      ..|.++|+..+.. ..+..+.
T Consensus       158 ~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~  235 (388)
T 3pe7_A          158 FHEFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHA  235 (388)
T ss_dssp             HHHHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCC
T ss_pred             hhhhhccCCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCC
Confidence                   23467999999988654433 3455678899999 99988877653      3788888876543 3343333


Q ss_pred             --CCeEEEEEcCCCCeEEEEec-CC----eEEEEeCCCCceeeeeecCCC----CCeEEEEECCCCCEEEEE--------
Q psy4391         154 --DPVSAVHFNRDGSLIVSSSY-DG----LCRIWDTASGQCLKTLIDDDN----PPVSFVKFSPNGKYILAA--------  214 (231)
Q Consensus       154 --~~v~~~~~~~~~~~l~~~~~-dg----~i~v~d~~~~~~~~~~~~~~~----~~i~~~~~s~~g~~l~~~--------  214 (231)
                        ..+..++|+|||+.|+..+. ++    .|.+||+.+++..........    .....++|+|||+.|+..        
T Consensus       236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  315 (388)
T 3pe7_A          236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK  315 (388)
T ss_dssp             TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred             CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence              24778899999998865443 22    399999998874322111110    000113689999988864        


Q ss_pred             -eCCCeEEEEeCC
Q psy4391         215 -TLDNTLKLWDSY  226 (231)
Q Consensus       215 -s~d~~v~vwd~~  226 (231)
                       ..+..|.+||..
T Consensus       316 ~~~~~~i~~~d~~  328 (388)
T 3pe7_A          316 IENDPFLYVFNMK  328 (388)
T ss_dssp             -CCCCEEEEEETT
T ss_pred             cCCCCEEEEEecc
Confidence             345689999964

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.73  E-value=7.7e-15  Score=110.62  Aligned_cols=193  Identities=15%  Similarity=0.171  Sum_probs=134.9

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecc----cccEEEEEECCCCCEEEE----ec--------
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSRLLVS----GS--------   88 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~--------   88 (231)
                      .+...+.+++++++|+++++...++.|.+|+..+++........    ...+.+++++|+|+++++    +.        
T Consensus        66 ~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~  145 (296)
T 3e5z_A           66 HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYG  145 (296)
T ss_dssp             SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSC
T ss_pred             CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccc
Confidence            45567899999999998877766789999998777654433221    123567899999998876    32        


Q ss_pred             -----CCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECC-CCce---eeeccCCCCCeEEE
Q psy4391          89 -----DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR-TGKC---LKTLPAHSDPVSAV  159 (231)
Q Consensus        89 -----~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~---~~~~~~~~~~v~~~  159 (231)
                           ..+.|..++.. ++. ..+..+......++|+|+++.+++.+.++.|.+||+. .++.   ...+..+...+..+
T Consensus       146 ~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i  223 (296)
T 3e5z_A          146 GEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL  223 (296)
T ss_dssp             CCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE
T ss_pred             ccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE
Confidence                 13456666655 443 3333445567789999999988777778899999986 4443   22223344556789


Q ss_pred             EEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEE-CCCCCEEEEEeCCCeEEEEeC
Q psy4391         160 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF-SPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       160 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~-s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +++++|+++++.  ++.|.+||.. ++.+..+.....  +..++| +|+++.|++++.++ +..++.
T Consensus       224 ~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~~-l~~~~~  284 (296)
T 3e5z_A          224 RVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVSTE-FWSIET  284 (296)
T ss_dssp             EEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETTE-EEEEEC
T ss_pred             EECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCCe-EEEEEc
Confidence            999999866655  8899999987 665655544433  677888 68999999988764 434443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=6.9e-15  Score=109.19  Aligned_cols=196  Identities=10%  Similarity=-0.031  Sum_probs=135.9

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy4391          29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~  107 (231)
                      ...+++++++|++++ +...++.|.+|+..+.............+..++++++++.+++.. ++.|.+||..+.......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            678999999999766 546778999998754432221122234577899999998666655 889999998765432221


Q ss_pred             cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce
Q psy4391         108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (231)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (231)
                      ......+..++++++++++++...++.|.+|+..+.............+..++++++++++++...++.|.+||......
T Consensus       104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            12235678899999999888777788999998665543322222233567899999999777777788999999887654


Q ss_pred             eeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       188 ~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ..... ........++++++|..+++...++.|.+||..
T Consensus       184 ~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          184 VVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             EECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred             Eeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence            33221 222456789999999777777678899999964

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.72  E-value=1.4e-13  Score=103.36  Aligned_cols=202  Identities=11%  Similarity=0.081  Sum_probs=145.4

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEE-ecccccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      +.+..+...+.+++++++|++.++...++.|.+|+.. +...... ......+..+++++++..+++...++.|..|+..
T Consensus         8 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A            8 LNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             EECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            4455566789999999999977776667899999987 5443222 2234568899999999988877778889999986


Q ss_pred             CceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeee-ccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      .......+......+..+.+++++.++++...++.|..||. +++.... .......+..+++++++.++++...++.|.
T Consensus        87 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           87 GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            32211222223456788999999998888777889999998 5543322 223345688999999998877777778999


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .||. +++............+..++++++|+++++...++.|.+||.
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence            9998 665443212223345678999999997777666889999986

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.71  E-value=4.2e-15  Score=111.09  Aligned_cols=183  Identities=16%  Similarity=0.106  Sum_probs=143.0

Q ss_pred             CCCCEEEEEeCCCcEEEeecCCCcEEEEEeccc-ccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCC-cce
Q psy4391          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHS-NYV  114 (231)
Q Consensus        37 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~-~~v  114 (231)
                      ..++.|++++.++.|.+||.++++....+..+. ..+.++.++|+|+.++  +.++.|..||. +++.+..+.... ..+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            346788999999999999999999988887654 4678899999999887  34678999999 788887777542 467


Q ss_pred             EEEEECCCCCEEEEeec-CCcEEEEECCCCceeeeccCC------CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce
Q psy4391         115 FCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAH------SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (231)
Q Consensus       115 ~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (231)
                      ..+.+.++|+++++.+. ++.+..+|. .++.+..+...      ......+++.++|.++++...++.|..||.. ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            78889999999999887 778888886 56665554321      1233455788999999999999999999998 887


Q ss_pred             eeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       188 ~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +-++....  ....+...++|..+++++.+++|..+|..
T Consensus       158 ~w~~~~~~--~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          158 LNSVKLSG--TPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             EEEEECSS--CCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             EEEEECCC--CccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence            76665432  23456778999999988888899998864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=2.6e-13  Score=101.92  Aligned_cols=195  Identities=12%  Similarity=0.085  Sum_probs=141.2

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      +...+.+++++++|.+.++...++.|..|+.. +.. ..+.  .....+..+++.++++.+++...++.|..||. +++.
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~  131 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI  131 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence            44678899999999987776668889999875 332 2222  23456889999999988877777889999998 4443


Q ss_pred             eee-ecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeee-ccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         104 LKT-LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       104 ~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      ... .......+..+.++++++++++...++.|..||. +++.... .......+..+++++++.++++...++.|.+||
T Consensus       132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  210 (299)
T 2z2n_A          132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT  210 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence            322 2223456788999999988887777789999998 5654332 233345688999999998777766788999999


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      . +++............+..++++++|+.+++...++.|.+||.
T Consensus       211 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          211 T-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             C-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            9 665433212223345788999999996666657789999986

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.71  E-value=8.1e-16  Score=129.04  Aligned_cols=196  Identities=13%  Similarity=0.120  Sum_probs=133.6

Q ss_pred             ccccceEEEEECCCCCEEEE-----EeCCCcEEEeecCCCcEEEEEecccccE--EEEEECCCCCEEEEecCCCc-----
Q psy4391          25 GHTKAVSSVKFSPNGEWLAS-----SSADKLIKIWGAYDGKFEKTISGHKLGI--SDVAWSSDSRLLVSGSDDKT-----   92 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~-----~~~dg~i~i~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~~g~-----   92 (231)
                      +|...+..++|||||++||.     |+.+..|++||+.+++...  ..+...+  ..++|+|||+.|+.++.+..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            35557899999999999883     3334689999998876531  1111122  57899999999998887665     


Q ss_pred             --------EEEEeCCCce----eeeeecCCCcceEEEEECCCCCEEEEeecCC----cEEEEECCCCceeeeccCCCCCe
Q psy4391          93 --------LKIWELSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE----SVRIWDVRTGKCLKTLPAHSDPV  156 (231)
Q Consensus        93 --------i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~~v  156 (231)
                              |++|++.+++    .+.....+...+..+.|+|+|++|+..+.++    .|+++|..+++ ...+..+...+
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~  274 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAK  274 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCC
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCce
Confidence                    9999998765    2222223445678899999999998887665    67777765554 33444444455


Q ss_pred             EEEEEcCCCCeEEEEe---cCCeEEEEeCCCCce--eeeeecCC-CCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         157 SAVHFNRDGSLIVSSS---YDGLCRIWDTASGQC--LKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       157 ~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~--~~~~~~~~-~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ....+ +++.+++...   .++.|.+||+.+++.  ...+.... ...+..++++ ++.++++...|+..++|..
T Consensus       275 ~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          275 YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            55556 5666444443   257899999987652  23344333 4457778887 6778888888998888753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.71  E-value=5.2e-16  Score=121.22  Aligned_cols=189  Identities=9%  Similarity=0.013  Sum_probs=130.1

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEE-------------------EEECCCCCEEEEe-----
Q psy4391          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD-------------------VAWSSDSRLLVSG-----   87 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----   87 (231)
                      .+.|+|+|+.|+.++.++.+.+|+..+++.......+......                   ..|+|+++.++..     
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  164 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT  164 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence            3789999999999888889999999877655444433221111                   3467777766554     


Q ss_pred             cCCCcEEEEeCCCceeeeeecCCCcceEEEEECC-CCCEEEEeecC------CcEEEEECCCCceeeeccCC--CCCeEE
Q psy4391          88 SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFD------ESVRIWDVRTGKCLKTLPAH--SDPVSA  158 (231)
Q Consensus        88 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~--~~~v~~  158 (231)
                      ..+..|++||+.+++..... .+...+..+.|+| ++..|+..+.+      ..|.+||+..++. ..+..+  ...+..
T Consensus       165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~  242 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTH  242 (396)
T ss_dssp             CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEE
T ss_pred             CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccc
Confidence            35668999999887755444 3445677889999 78877766543      3688999876553 333222  224778


Q ss_pred             EEEcCCCCeEEEEecC-----CeEEEEeCCCCceeeeeecCCCCCeEEEEECC-CCCEEEEEe----------------C
Q psy4391         159 VHFNRDGSLIVSSSYD-----GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAAT----------------L  216 (231)
Q Consensus       159 ~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~s----------------~  216 (231)
                      ++|+|+|+.|+.++.+     +.|.+||+.+++..... ...  ... +.|+| +|+++++++                .
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~  318 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-VMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN  318 (396)
T ss_dssp             EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-ECC--SEE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred             eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-eCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence            8999999988776544     44999999887643322 111  233 78999 999888754                2


Q ss_pred             CCeEEEEeCC
Q psy4391         217 DNTLKLWDSY  226 (231)
Q Consensus       217 d~~v~vwd~~  226 (231)
                      ++.|.+||..
T Consensus       319 ~~~i~~~d~~  328 (396)
T 3c5m_A          319 DPFLYVLNTK  328 (396)
T ss_dssp             CCEEEEEETT
T ss_pred             CCcEEEEecc
Confidence            4689999863

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.70  E-value=3.7e-15  Score=114.10  Aligned_cols=194  Identities=9%  Similarity=0.054  Sum_probs=140.3

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~  107 (231)
                      ..|.++.|++++..++....++.++.|   .+.....+..+...+.+++|+++++.++++..++.|.+||.++++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            346778889888877766778888888   34444555555566789999999997778888899999999887755444


Q ss_pred             cCCCcceEEEEECCCCCEEEEeecC----CcEEEEECCCCceeeecc--CCCCCeEEEEEcCCCCeEEEEec------CC
Q psy4391         108 KGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKCLKTLP--AHSDPVSAVHFNRDGSLIVSSSY------DG  175 (231)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~------dg  175 (231)
                      ..+...+..++++|+++++++...+    +.|.+||.+++.....+.  .....+..++++|+++++++...      .+
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  162 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG  162 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence            3445678899999999988877666    689999998776432222  23457889999999987776653      35


Q ss_pred             eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEE-eCCCeEEEEeCC
Q psy4391         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDSY  226 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-s~d~~v~vwd~~  226 (231)
                      .|..+|..+++... +.. .......++|+|+|++|+++ +.++.|.+||..
T Consensus       163 ~l~~~~~~~~~~~~-~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          163 GVYYVSPDFRTVTP-IIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALE  212 (333)
T ss_dssp             EEEEECTTSCCEEE-EEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             eEEEEeCCCCEEEE-eec-CCCcccceEECCCCCEEEEEeCCCCeEEEEEec
Confidence            67777776554332 221 12245789999999866554 457899999863

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.68  E-value=2.6e-14  Score=109.44  Aligned_cols=195  Identities=10%  Similarity=-0.013  Sum_probs=138.5

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEeccc-----ccEEEEEECCCCCEEEEec--CCCcEEEEeCC
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-----LGISDVAWSSDSRLLVSGS--DDKTLKIWELS   99 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~~g~i~~~d~~   99 (231)
                      ......++++++++..++...++.|.+||..+++....+....     .....+++ . +..++++.  .++.|.++|.+
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETT
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECC
Confidence            3567789998888544444478999999999888776665332     13445666 3 44454444  48899999999


Q ss_pred             CceeeeeecCCCcceEEEEECCCCCEEEEeecC----------CcEEEEECCCCceeeeccCC-CCCeEEEEEcCCCCeE
Q psy4391         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----------ESVRIWDVRTGKCLKTLPAH-SDPVSAVHFNRDGSLI  168 (231)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l  168 (231)
                      +++....+.... ....+.++|+|+++++...+          +.|.++|..+++....+... ......++++|+++.+
T Consensus       161 t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~l  239 (328)
T 3dsm_A          161 TDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTL  239 (328)
T ss_dssp             TTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEE
T ss_pred             CCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEE
Confidence            988777766432 34567889999987777654          78999999988876665432 2367899999999988


Q ss_pred             EEEecCCeEEEEeCCCCceeeee-ecCCCCCeEEEEECCC-CCEEEEE----eCCCeEEEEeCC
Q psy4391         169 VSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPN-GKYILAA----TLDNTLKLWDSY  226 (231)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~~i~~~~~s~~-g~~l~~~----s~d~~v~vwd~~  226 (231)
                      +++..  .|.+||+.+++..... ..........++++|+ +..+++.    ..++.|.+||..
T Consensus       240 yv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          240 YWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             EEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             EEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            88765  8999999887753221 1111234678999995 5555555    567899999964

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.68  E-value=2.3e-15  Score=116.75  Aligned_cols=174  Identities=10%  Similarity=0.035  Sum_probs=128.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCc---------EEE-EEecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------FEK-TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      .+..+++++...++++|+.++ +.+|+..+.+         ... ....... |..++|  +++.|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            588999999999999999875 4558754322         111 1112344 999999  88999888 8899999998


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      .+.........+...+.++.+.+.  .+++++.||.|.+||+..+....    +...|++++|+|+|  ++.|..||.++
T Consensus       114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence            765444344445555777666554  38888999999999999777543    34579999999999  67889999999


Q ss_pred             EEeCCCCce--eeeee-----c---CCCCCeEEEEECCCCCEEEEEe
Q psy4391         179 IWDTASGQC--LKTLI-----D---DDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       179 v~d~~~~~~--~~~~~-----~---~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                      +|+...++.  ..++.     .   .+...+.++.|.++++++++=+
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            998887764  34441     1   2456789999999999888744

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.67  E-value=1.7e-13  Score=102.41  Aligned_cols=190  Identities=17%  Similarity=0.098  Sum_probs=142.5

Q ss_pred             EEeecccc-cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecc-cccEEEEEECCCCCEEEEecC-CCcEEEE
Q psy4391          20 KFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSD-DKTLKIW   96 (231)
Q Consensus        20 ~~~~~~h~-~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-~g~i~~~   96 (231)
                      ..++..+. ..+.++.++|+|++++  +.++.|..||. +++....+..+ ...+..+.+.++|+.+++.+. ++.+..+
T Consensus        28 ~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~v  104 (276)
T 3no2_A           28 VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEV  104 (276)
T ss_dssp             EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEE
T ss_pred             EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEE
Confidence            34444443 4678999999999888  34778999998 78888887754 246788899999999988877 7778777


Q ss_pred             eCCCceeeeeecC------CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEE
Q psy4391          97 ELSSGKCLKTLKG------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS  170 (231)
Q Consensus        97 d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  170 (231)
                      |. +++.+..+..      +......+...++|+++++...++.|..||.+ |+.+..+.... .+..+...+++.++++
T Consensus       105 d~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~  181 (276)
T 3no2_A          105 NM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVA  181 (276)
T ss_dssp             CT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEE
T ss_pred             eC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEE
Confidence            76 4555544431      11223345678999999999999999999998 88888876643 4556778899999998


Q ss_pred             EecCCeEEEEeCCCCceeeeeecCC--C---CCeEEEEECCCCCEEEEEe
Q psy4391         171 SSYDGLCRIWDTASGQCLKTLIDDD--N---PPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~~~~~--~---~~i~~~~~s~~g~~l~~~s  215 (231)
                      +..++.|..+|..+++.+-++....  .   ..+..++..++|..+++..
T Consensus       182 ~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          182 CGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             eCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            8888899999999898877665322  1   1256778889998887763

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=5.9e-14  Score=107.48  Aligned_cols=192  Identities=10%  Similarity=-0.054  Sum_probs=138.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK  108 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~  108 (231)
                      ....+.+. ++++.++...++.|.+||..+++....+.. ......++++++++.+++...++.|.+||.++++....+.
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            35667774 344455556678999999999988887753 3567889998988544444478999999999988776665


Q ss_pred             CCC-----cceEEEEECCCCCEEEEee-cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC--------
Q psy4391         109 GHS-----NYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD--------  174 (231)
Q Consensus       109 ~~~-----~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------  174 (231)
                      ...     .....+++ .++.++++.. .++.|.++|+.+++.+..+.... ....++++|+|++++++..+        
T Consensus       123 ~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~  200 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGY  200 (328)
T ss_dssp             CTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred             cCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCcccc
Confidence            332     13345556 3444444433 48899999999998777766533 34678899999977776554        


Q ss_pred             --CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         175 --GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       175 --g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                        +.|.++|..+++....+..........++++|++++|+++..  .|.+||..
T Consensus       201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~  252 (328)
T 3dsm_A          201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE  252 (328)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred             CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence              789999999988776654433334678999999999988764  89999963

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.66  E-value=4.2e-14  Score=119.47  Aligned_cols=195  Identities=15%  Similarity=0.141  Sum_probs=131.0

Q ss_pred             cccceEEEEECCCCCEEEEEeCC-----CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCc--------
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSAD-----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKT--------   92 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~--------   92 (231)
                      |...+..++|||||++|+.+..+     ..|++||+.+++...... +...+..++|+|| +.|+.+..++.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            33468899999999998875443     359999998887654321 2222356899999 98888776543        


Q ss_pred             ------EEEEeCCCcee--eeeecC--CCcceEEEEECCCCCEEEEeecCC-----cEEEEECCCC--ceeeeccCCCCC
Q psy4391          93 ------LKIWELSSGKC--LKTLKG--HSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTG--KCLKTLPAHSDP  155 (231)
Q Consensus        93 ------i~~~d~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~--~~~~~~~~~~~~  155 (231)
                            |++|++.++..  ...+..  +...+..+.|+|+|++|+..+.++     .|++||+.++  +....+..+...
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  88999876542  222222  223577889999999988877544     7999999876  313444444444


Q ss_pred             eEEEEEcCCCCeEEEEecC----CeEEEEeCCCC-ceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         156 VSAVHFNRDGSLIVSSSYD----GLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       156 v~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      .... ++|+++.|+..+.+    +.|.+||+.++ .....+.......+..+.++ ++.++++...|+..+||.
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  390 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLA  390 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence            4444 34889888877653    46999999875 23444444444446667777 566777788888777774

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=3.3e-13  Score=110.23  Aligned_cols=189  Identities=13%  Similarity=0.068  Sum_probs=142.1

Q ss_pred             CCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCC--CceeeeeecCCCcce
Q psy4391          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS--SGKCLKTLKGHSNYV  114 (231)
Q Consensus        37 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~--~~~~~~~~~~~~~~v  114 (231)
                      +.+.++++...++.|.++|..+++....+... ..+..+.++|||+++++++.++.|.+||+.  +.+.+..+.... ..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P  242 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA  242 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence            33445566777899999999999888777643 356789999999999999999999999995  777777776543 35


Q ss_pred             EEEEEC----CCCCEEEEeec-CCcEEEEECCCCceeeeccCC-----------CCCeEEEEEcCCCCeEE-EEecCCeE
Q psy4391         115 FCCNFN----PQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIV-SSSYDGLC  177 (231)
Q Consensus       115 ~~~~~~----~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~-~~~~dg~i  177 (231)
                      ..+.++    |+|+++++++. ++.+.++|..+.+.+..+...           ...+..+..++++..++ ....+|.|
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v  322 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  322 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence            688999    69998887765 588999999998877765432           12567888888766544 45566999


Q ss_pred             EEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCC
Q psy4391         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSYP  227 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~~  227 (231)
                      .++|....+.+.............+.|+|+|++++++. .++.|.++|...
T Consensus       323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t  373 (567)
T 1qks_A          323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  373 (567)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC
Confidence            99998876543322222334456788999999987766 578999999754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.65  E-value=4.1e-12  Score=95.37  Aligned_cols=197  Identities=13%  Similarity=0.119  Sum_probs=139.7

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEE-EecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      .+...+.++++.++|++.++...++.|..++.. ++.... .......+..+++.++++.+++...++.|..+|.+ ++.
T Consensus        59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~  136 (300)
T 2qc5_A           59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI  136 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence            334678899999999977776667889999876 544322 22233568899999999888777778899999987 543


Q ss_pred             ee-eecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeee-ccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         104 LK-TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       104 ~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      .. .+......+..+.+++++++.++...++.|..+|. +++.... .......+..+++++++.++++....+.|.++|
T Consensus       137 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  215 (300)
T 2qc5_A          137 YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT  215 (300)
T ss_dssp             EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence            32 22323456788999999997777666788999998 4543322 223345688999999998777766678899999


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      . +++............+..++++++|+.+++...++.|..||.
T Consensus       216 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          216 T-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             C-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence            8 444333222223345678999999986666656789999986

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.64  E-value=3.7e-12  Score=95.56  Aligned_cols=202  Identities=9%  Similarity=0.094  Sum_probs=144.4

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEE-EecccccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      .+.+......+.++.+.++|++.++...++.|.+|+.. ++.... +......+..+++.++++.+++...++.|..+|.
T Consensus        12 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~   90 (300)
T 2qc5_A           12 EFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK   90 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             EEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence            34444455688999999999987776678999999987 544332 2223356889999999988777777888999998


Q ss_pred             CCceeee-eecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceee-eccCCCCCeEEEEEcCCCCeEEEEecCCe
Q psy4391          99 SSGKCLK-TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK-TLPAHSDPVSAVHFNRDGSLIVSSSYDGL  176 (231)
Q Consensus        99 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  176 (231)
                      . ++... ........+..+.++++++++++...++.|..+|.. ++... .+......+..++++++++++++...++.
T Consensus        91 ~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~  168 (300)
T 2qc5_A           91 K-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNS  168 (300)
T ss_dssp             T-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             C-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCe
Confidence            7 44322 222233567889999999988877778899999987 55432 22323457889999999997766666789


Q ss_pred             EEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         177 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       177 i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      |..+|. +++...............++++++|.++++....+.|.+||.
T Consensus       169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          169 IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence            999998 555433222222345678999999987776666778999986

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.63  E-value=7.5e-14  Score=107.27  Aligned_cols=179  Identities=11%  Similarity=0.139  Sum_probs=121.2

Q ss_pred             eEEEEECCCCCEEEEEeC---------------------------CCcEEEeecCCCcEEEEEecccccEEEEEECCCCC
Q psy4391          30 VSSVKFSPNGEWLASSSA---------------------------DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR   82 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~---------------------------dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   82 (231)
                      +..+.|+|+|+.|+.++.                           ...|.+|+..+++....+.. . .+..+.|+|+| 
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-  182 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-  182 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence            889999999998887653                           25688899887766344544 3 77889999999 


Q ss_pred             EEEEecCCC-------cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecC--------CcEEEEECCCCceee
Q psy4391          83 LLVSGSDDK-------TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD--------ESVRIWDVRTGKCLK  147 (231)
Q Consensus        83 ~l~~~~~~g-------~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~  147 (231)
                      .++++..++       ...+|.+.+++.. .+..+ ..+..  ++|+|+.|+..+.+        ..|.+||  +++...
T Consensus       183 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~  256 (347)
T 2gop_A          183 IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG  256 (347)
T ss_dssp             EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE
T ss_pred             EEEEEecccccccccccccEEEeCCCceE-EeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEe
Confidence            776665432       3344433355433 33323 33443  38999988877644        3688888  555444


Q ss_pred             eccCCCCCeEE-EEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeE-EEEe
Q psy4391         148 TLPAHSDPVSA-VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL-KLWD  224 (231)
Q Consensus       148 ~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v-~vwd  224 (231)
                      ....+...+.. +.|+ ++ ++++++.++.+++| +.+++. ..+... ...+..++|+|  .++++++.++.. ++|.
T Consensus       257 l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~~~-~~~v~~~~~s~--~~~~~~~~~~~~~~l~~  328 (347)
T 2gop_A          257 ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIAKG-RHWIMGFDVDE--IVVYLKETATRLRELFT  328 (347)
T ss_dssp             SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE-EEEECS-SSEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred             ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEecC-CCeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence            44455567775 8999 88 88899999999999 775554 333333 55688899999  677777766654 6664

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=2.8e-13  Score=113.97  Aligned_cols=195  Identities=12%  Similarity=0.002  Sum_probs=134.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCc----------------EEEeecCCCcE--EEEEec--ccccEEEEEECCCCCEEEEecC
Q psy4391          30 VSSVKFSPNGEWLASSSADKL----------------IKIWGAYDGKF--EKTISG--HKLGISDVAWSSDSRLLVSGSD   89 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~dg~----------------i~i~~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~   89 (231)
                      +..++|+|||+.|+.+..++.                |++|++.++..  ......  +...+..+.|+|||++|+..+.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            567999999999988877765                99999877652  222232  2344778999999999887654


Q ss_pred             -----CCcEEEEeCCC------ce-eeeeecCCCcceEEEEECCCCCEEEEeecC----CcEEEEECCCCce--eeeccC
Q psy4391          90 -----DKTLKIWELSS------GK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKC--LKTLPA  151 (231)
Q Consensus        90 -----~g~i~~~d~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~--~~~~~~  151 (231)
                           +..|++||+.+      +. ....+..+...... .|+|+|..|+..+..    +.|.+||+.++..  ...+..
T Consensus       253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~  331 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP  331 (710)
T ss_dssp             CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred             ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence                 56899999976      42 24445444444433 478888887766553    3599999987641  233334


Q ss_pred             CCC--CeEEEEEcCCCCeEEEEecCCe--EEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe----CCCeEEEE
Q psy4391         152 HSD--PVSAVHFNRDGSLIVSSSYDGL--CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT----LDNTLKLW  223 (231)
Q Consensus       152 ~~~--~v~~~~~~~~~~~l~~~~~dg~--i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s----~d~~v~vw  223 (231)
                      +..  .+..+.|++++.++++...++.  |.+||+.+++.+..+... ...+..+.++|+++.++...    ..+.|..|
T Consensus       332 ~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~  410 (710)
T 2xdw_A          332 EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHC  410 (710)
T ss_dssp             CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEE
T ss_pred             CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEE
Confidence            433  5778899877778888888884  666788677665555433 44577788999997666442    24689999


Q ss_pred             eCC
Q psy4391         224 DSY  226 (231)
Q Consensus       224 d~~  226 (231)
                      |..
T Consensus       411 d~~  413 (710)
T 2xdw_A          411 DLT  413 (710)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            864

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.61  E-value=2.6e-12  Score=100.00  Aligned_cols=189  Identities=11%  Similarity=0.006  Sum_probs=123.2

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEeecCCCcEEEEEecc-------cccEEEEEECCCCCEEEEecC--CCc
Q psy4391          32 SVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGH-------KLGISDVAWSSDSRLLVSGSD--DKT   92 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--~g~   92 (231)
                      .++++|||++++.+.          .++.|.+||..+.+....+...       ......++|+|||++++++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999998875          3678999999887776665432       123457899999999988764  478


Q ss_pred             EEEEeCCCceeeee-ecCCCcceEEEEECCCC-CEEEEeec---------------------------------------
Q psy4391          93 LKIWELSSGKCLKT-LKGHSNYVFCCNFNPQS-NLIVSGSF---------------------------------------  131 (231)
Q Consensus        93 i~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~---------------------------------------  131 (231)
                      |.++| ++++.+.. +.....    +.+.|++ +.+++.+.                                       
T Consensus       150 v~viD-~t~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~  224 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPTC----YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCce----EEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecC
Confidence            99999 98887766 543211    1111211 11222222                                       


Q ss_pred             --------CCcEEEEECCCCc--eeeeccC----------CCCCeEEEEEcCCCCeEEEEec----------CCeEEEEe
Q psy4391         132 --------DESVRIWDVRTGK--CLKTLPA----------HSDPVSAVHFNRDGSLIVSSSY----------DGLCRIWD  181 (231)
Q Consensus       132 --------d~~i~v~d~~~~~--~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~v~d  181 (231)
                              .+.+.+.|+..+.  .+..+..          .......+.++|+++.+++...          ++.|.++|
T Consensus       225 ~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID  304 (373)
T 2mad_H          225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             CEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEE
Confidence                    3344444443221  1111100          0112334778999888777643          35799999


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCC-EEEEEe-CCCeEEEEeCCC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAAT-LDNTLKLWDSYP  227 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s-~d~~v~vwd~~~  227 (231)
                      +.+++.+.++....  ....++|+|||+ .++++. .++.|.+||...
T Consensus       305 ~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          305 GLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             CCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            99999888875433  346799999999 777776 489999999743

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.60  E-value=1.4e-12  Score=102.82  Aligned_cols=194  Identities=12%  Similarity=0.060  Sum_probs=132.7

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCC--cEEEEeCCCceeee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK--TLKIWELSSGKCLK  105 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g--~i~~~d~~~~~~~~  105 (231)
                      .....++|+++++++++...++.|++|+..++........... .. ++|+++++.++++..++  .|.+++...+....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            3577999999999777777778999999977766554444322 33 89999999888887765  78888876544333


Q ss_pred             ee----cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeee----ccCCCCCe-E-EEEEcCC-CCeEEEEecC
Q psy4391         106 TL----KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT----LPAHSDPV-S-AVHFNRD-GSLIVSSSYD  174 (231)
Q Consensus       106 ~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~----~~~~~~~v-~-~~~~~~~-~~~l~~~~~d  174 (231)
                      .+    ......+..++++|++..|+.+..++.|+.||..++.....    .......- . .++|+|+ +.++++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            33    21334566789999555555577788999999987653222    11111222 2 8999995 5556666677


Q ss_pred             CeEEEEeCCCCceeeeeecCC--------------CCCeEEEEECCCCCEEEEEe-CCCeEEEEeC
Q psy4391         175 GLCRIWDTASGQCLKTLIDDD--------------NPPVSFVKFSPNGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~--------------~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~  225 (231)
                      +.|..|+....  ...+....              -.....++++|+|+++++-+ .+++|+.||.
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~  352 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDI  352 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEET
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEEC
Confidence            89999987643  22222211              12356799999999777777 7889999993

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.58  E-value=9.3e-12  Score=101.69  Aligned_cols=196  Identities=13%  Similarity=0.077  Sum_probs=140.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecC--CCcEEEEEecccccEEEEEEC----CCCCEEEEecC-CCcEEEEeCCCc
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAY--DGKFEKTISGHKLGISDVAWS----SDSRLLVSGSD-DKTLKIWELSSG  101 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-~g~i~~~d~~~~  101 (231)
                      .+..+.|+|||+++++++.++.|.+||..  +.+....+.... ....++|+    |+|+++++++. ++.+.++|..+.
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~  276 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL  276 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence            46689999999999999999999999995  777777766433 46789999    69998877655 589999999998


Q ss_pred             eeeeeecCC-----------CcceEEEEECCCCCEE-EEeecCCcEEEEECCCCceee--eccCCCCCeEEEEEcCCCCe
Q psy4391         102 KCLKTLKGH-----------SNYVFCCNFNPQSNLI-VSGSFDESVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSL  167 (231)
Q Consensus       102 ~~~~~~~~~-----------~~~v~~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~  167 (231)
                      +.+..+...           ...+..+..++++..+ +.....|.|.++|....+.+.  .+.. ......+.|+|++++
T Consensus       277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~-~~~~~d~~~~pdgr~  355 (567)
T 1qks_A          277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRY  355 (567)
T ss_dssp             CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSCE
T ss_pred             cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec-cccccCceECCCCCE
Confidence            877766432           1246677788876554 444567899999987654222  2222 335667899999999


Q ss_pred             EEEEe-cCCeEEEEeCCCCceeeeeec-CCCC---CeEEEEECCCCCEEE-EEe-CCCeEEEEeCCC
Q psy4391         168 IVSSS-YDGLCRIWDTASGQCLKTLID-DDNP---PVSFVKFSPNGKYIL-AAT-LDNTLKLWDSYP  227 (231)
Q Consensus       168 l~~~~-~dg~i~v~d~~~~~~~~~~~~-~~~~---~i~~~~~s~~g~~l~-~~s-~d~~v~vwd~~~  227 (231)
                      ++++. .++.|.++|+.+++....+.. ...+   .... .++|++..+. ++. .++.|.++|+.|
T Consensus       356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            87665 568999999999987766644 2211   1112 2688855444 443 358999999865

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.57  E-value=3e-12  Score=96.93  Aligned_cols=195  Identities=12%  Similarity=0.194  Sum_probs=132.8

Q ss_pred             cccceEEEEECCC-CCEEEEEeCCCcEEEeecCCCcEEEE-Eec----ccccEEEEEECCCCCEEEEecCC---------
Q psy4391          26 HTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKT-ISG----HKLGISDVAWSSDSRLLVSGSDD---------   90 (231)
Q Consensus        26 h~~~i~~~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~~---------   90 (231)
                      +...+.+++++++ |+++++. ..+.|.+|+.. ++.... ...    ....+.+++++++|+.+++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            4567889999999 6655544 44578889987 554332 211    12347889999999877776554         


Q ss_pred             ------CcEEEEeCCCceeeeeecCCCcceEEEEEC----CCCCEEEEe-ecCCcEEEEECC-CCc-----eeeeccCCC
Q psy4391          91 ------KTLKIWELSSGKCLKTLKGHSNYVFCCNFN----PQSNLIVSG-SFDESVRIWDVR-TGK-----CLKTLPAHS  153 (231)
Q Consensus        91 ------g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~i~v~d~~-~~~-----~~~~~~~~~  153 (231)
                            +.|..|+.. ++...... .......++++    |+++.++.+ ..++.|.+||+. .++     ....+..+.
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  224 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             cccCCCCeEEEECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence                  567777765 44332222 22345678889    998765554 567899999986 443     222333333


Q ss_pred             -CCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeC
Q psy4391         154 -DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       154 -~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~  225 (231)
                       ..+..++++++|.++++...++.|.+||..+++....+... ...+..++++|+|+.|++++ .++.|..|+.
T Consensus       225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence             55788999999998888777899999999877655554332 34578899999999665554 5679999985

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.56  E-value=6.2e-12  Score=94.85  Aligned_cols=186  Identities=15%  Similarity=0.128  Sum_probs=125.4

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec----ccccEEEEEECCCCCEEEEecCC---------CcE
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG----HKLGISDVAWSSDSRLLVSGSDD---------KTL   93 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~---------g~i   93 (231)
                      ...+.+++++++|+++++ . ++.|.+|+..+++.......    ....+.+++++|+|+++++....         ..-
T Consensus        53 ~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~  130 (297)
T 3g4e_A           53 DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQG  130 (297)
T ss_dssp             SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCE
T ss_pred             CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCc
Confidence            457889999999996554 3 56789999877765433321    12357889999999976654321         223


Q ss_pred             EEEeCCC-ceeeeeecCCCcceEEEEECCCCCEEEE-eecCCcEEEEEC--CCCce-----eeeccCCCCCeEEEEEcCC
Q psy4391          94 KIWELSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDV--RTGKC-----LKTLPAHSDPVSAVHFNRD  164 (231)
Q Consensus        94 ~~~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~--~~~~~-----~~~~~~~~~~v~~~~~~~~  164 (231)
                      .+|.+.. ++... +.........++|+|+++.++. .+.++.|.+||+  .++..     ...+....+.+..++++++
T Consensus       131 ~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~  209 (297)
T 3g4e_A          131 ALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE  209 (297)
T ss_dssp             EEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT
T ss_pred             EEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC
Confidence            4444432 33222 2222334568899999987654 456788999987  44532     1222223356788999999


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEEC-CCCCEEEEEeC
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATL  216 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~s~  216 (231)
                      |.+.++...++.|..||..+++.+..+... ...+.+++|. |+++.|++++.
T Consensus       210 G~lwva~~~~~~v~~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          210 GKLWVACYNGGRVIRLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             SCEEEEEETTTEEEEECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEEB
T ss_pred             CCEEEEEcCCCEEEEEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEcC
Confidence            988777777889999999988877766543 3457889998 89887776664

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.56  E-value=2.8e-13  Score=105.03  Aligned_cols=184  Identities=14%  Similarity=0.145  Sum_probs=130.7

Q ss_pred             CCCEEEEEe------CCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec----------CCCcEEEEeCCCc
Q psy4391          38 NGEWLASSS------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWELSSG  101 (231)
Q Consensus        38 ~~~~l~~~~------~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~g~i~~~d~~~~  101 (231)
                      +++++++..      .|+.|.+||..+++....+..+..+  .++|+|++++++++.          .++.|.+||..+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            566666543      3679999999888888777765544  899999999998876          2567999999988


Q ss_pred             eeeeeecCC------CcceEEEEECCCCCEEEEeec--CCcEEEEECCCCceeee-ccCCCCCeEEEEEcCCC-CeEEEE
Q psy4391         102 KCLKTLKGH------SNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDG-SLIVSS  171 (231)
Q Consensus       102 ~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~  171 (231)
                      +.+..+...      ......+.++|+|++++++..  ++.|.+||+.+++.+.. +...  ....+.+.|++ ..+++.
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEE
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEE
Confidence            877666432      123456889999999998874  57899999999988777 5532  22335667765 567788


Q ss_pred             ecCCeEEEEeCCC-Cceeeee-----ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         172 SYDGLCRIWDTAS-GQCLKTL-----IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       172 ~~dg~i~v~d~~~-~~~~~~~-----~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +.||.+.++++.. ++.....     ......++ .+.+++++..++..+.++.|.++|..
T Consensus       170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~  229 (361)
T 2oiz_A          170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFS  229 (361)
T ss_dssp             ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECS
T ss_pred             CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEec
Confidence            8899999998765 4433111     11112222 23346777778888888999999863

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=1.1e-11  Score=93.67  Aligned_cols=196  Identities=12%  Similarity=0.113  Sum_probs=132.7

Q ss_pred             ccceEEEEECCCCCEEEE-------EeCCCcEEEeecCCCcEEEEEe----cccccEEEEEECCC-CCEEEEecCCCcEE
Q psy4391          27 TKAVSSVKFSPNGEWLAS-------SSADKLIKIWGAYDGKFEKTIS----GHKLGISDVAWSSD-SRLLVSGSDDKTLK   94 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~-------~~~dg~i~i~~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~~g~i~   94 (231)
                      -....+++|+++|.++++       +..++.|.+|+..+++......    ++...+..++++++ ++.+++.. .+.|.
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~   95 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL   95 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence            345689999999988777       5678899999977776543222    13456889999999 76555544 44788


Q ss_pred             EEeCCCceeeee-ecC----CCcceEEEEECCCCCEEEEeecC---------------CcEEEEECCCCceeeeccCCCC
Q psy4391          95 IWELSSGKCLKT-LKG----HSNYVFCCNFNPQSNLIVSGSFD---------------ESVRIWDVRTGKCLKTLPAHSD  154 (231)
Q Consensus        95 ~~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---------------~~i~v~d~~~~~~~~~~~~~~~  154 (231)
                      +||.+ ++.... ...    ....+..+.++++|+++++...+               +.|..||.. ++... +..+..
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~  172 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQ  172 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEES
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCC
Confidence            99988 654333 221    12346789999999988877655               567778766 44322 222234


Q ss_pred             CeEEEEEc----CCCCeEEEE-ecCCeEEEEeCC-CCcee--eeeec--CCC-CCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         155 PVSAVHFN----RDGSLIVSS-SYDGLCRIWDTA-SGQCL--KTLID--DDN-PPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       155 ~v~~~~~~----~~~~~l~~~-~~dg~i~v~d~~-~~~~~--~~~~~--~~~-~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      ....++++    |+++.++.+ ..++.|.+||+. +++..  ..+..  ... .....++++++|+++++...++.|.+|
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~  252 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence            56788999    999766554 567899999976 34321  11111  111 345779999999988887788999999


Q ss_pred             eCC
Q psy4391         224 DSY  226 (231)
Q Consensus       224 d~~  226 (231)
                      |..
T Consensus       253 d~~  255 (314)
T 1pjx_A          253 GPD  255 (314)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            965

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.52  E-value=2.1e-12  Score=108.38  Aligned_cols=195  Identities=16%  Similarity=0.184  Sum_probs=128.1

Q ss_pred             ccccceEEEEECCCCCEEEEEe-----CCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCC--------
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSS-----ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK--------   91 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~-----~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g--------   91 (231)
                      +|...+..+.|||||++||.+.     ....|++||+.+++...... .......++|+ |++.|+.+..+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            3555788999999999887432     23479999999887654311 11113467899 999998887663        


Q ss_pred             -----cEEEEeCCCcee--eeeecC---CCcceEEEEECCCCCEEEEeec----CCcEEEEECCCCc-eeeeccCCCCCe
Q psy4391          92 -----TLKIWELSSGKC--LKTLKG---HSNYVFCCNFNPQSNLIVSGSF----DESVRIWDVRTGK-CLKTLPAHSDPV  156 (231)
Q Consensus        92 -----~i~~~d~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~-~~~~~~~~~~~v  156 (231)
                           .|++|++.+...  ......   +......+.++|+|++|+....    ...++++|+.++. ....+..+....
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                 399999876542  222222   2334678899999998865443    2479999998764 344444455555


Q ss_pred             EEEEEcCCCCeEEEE-ecC---CeEEEEeCCCCce--eeeeecCCCCCeEEEEECCCCCEEEEEeCCC---eEEEEeC
Q psy4391         157 SAVHFNRDGSLIVSS-SYD---GLCRIWDTASGQC--LKTLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDS  225 (231)
Q Consensus       157 ~~~~~~~~~~~l~~~-~~d---g~i~v~d~~~~~~--~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~---~v~vwd~  225 (231)
                      ... +++++..|+.. ..+   +.|..+|+.++..  ...+..+... +.  .|++++++|+....++   .|.+||.
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~--~~s~~g~~lv~~~~~~g~~~l~~~d~  357 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VL--TVHSGSGYLFAEYMVDATARVEQFDY  357 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CE--EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-EE--EEEEECCEEEEEEEECCeeEEEEEEC
Confidence            444 56666655544 333   6799999987653  2344433333 32  7899999888777644   7888875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.52  E-value=5.4e-11  Score=89.67  Aligned_cols=196  Identities=10%  Similarity=0.091  Sum_probs=128.4

Q ss_pred             ccccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          25 GHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      .+..-..+..|++++. ++++...++.|..|+..++... .+. ....+..++++++++++++.  ++.|.+||.++++.
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSA   85 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEE
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcE
Confidence            3344556899999655 5566667889999998776542 232 34568899999999955543  56799999987764


Q ss_pred             eeeecC----CCcceEEEEECCCCCEEEEeecC-----------CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeE
Q psy4391         104 LKTLKG----HSNYVFCCNFNPQSNLIVSGSFD-----------ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus       104 ~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  168 (231)
                      ......    ....+..+.++|+|+++++....           +.|..+|.. ++. ..+.........++|+|+++.+
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEECTTSCEE
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEcCCCCEE
Confidence            433221    12457789999999977755322           234444443 322 2222223356789999999876


Q ss_pred             E-EEecCCeEEEEeC--CCCcee--eeeec--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         169 V-SSSYDGLCRIWDT--ASGQCL--KTLID--DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       169 ~-~~~~dg~i~v~d~--~~~~~~--~~~~~--~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      + +.+.++.|.+||+  .++...  +.+..  ........++++++|.+.++...++.|.+||..
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred             EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence            5 4556789999986  455432  11211  112345678999999887777778899999974

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.51  E-value=8.7e-13  Score=110.70  Aligned_cols=193  Identities=10%  Similarity=-0.043  Sum_probs=126.4

Q ss_pred             EEEEECCCCCEEEEEeCCCc-------------EEEeecCCCcE--EEEEe--cccccEEEEEECCCCCEEEEecCCC--
Q psy4391          31 SSVKFSPNGEWLASSSADKL-------------IKIWGAYDGKF--EKTIS--GHKLGISDVAWSSDSRLLVSGSDDK--   91 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~dg~-------------i~i~~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g--   91 (231)
                      ..++|+|||+.|+.++.+..             |++|++.++..  .....  .+...+..+.|+|||++|+..+.++  
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            67899999999998887765             99999877652  22222  2335678899999999998777665  


Q ss_pred             --cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEee---cCCcEEEEECCCCce---eeeccCC-CCCeEEEEEc
Q psy4391          92 --TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS---FDESVRIWDVRTGKC---LKTLPAH-SDPVSAVHFN  162 (231)
Q Consensus        92 --~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~---~~~~~~~-~~~v~~~~~~  162 (231)
                        .|++++..+++.. .+..+........+ +++.+++...   .++.|.+||+.++..   ...+..+ ...+..++++
T Consensus       251 ~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          251 ENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             EEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             ceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence              6777776655433 33333334444445 5666444443   257899999987652   2223222 3457778888


Q ss_pred             CCCCeEEEEecCCeEEEEeCC-CCceeeeeecCCCCCeEEEEECCCCCEEEEEe----CCCeEEEEeCC
Q psy4391         163 RDGSLIVSSSYDGLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT----LDNTLKLWDSY  226 (231)
Q Consensus       163 ~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s----~d~~v~vwd~~  226 (231)
                       ++.++++...|+..++|.+. .++....+.......+..++++|+++.++...    ..+.|.+||..
T Consensus       329 -~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~  396 (695)
T 2bkl_A          329 -GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVS  396 (695)
T ss_dssp             -TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETT
T ss_pred             -CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence             67778888889887777443 34444444333344456678899998776433    24688899863

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.51  E-value=8.7e-12  Score=94.37  Aligned_cols=193  Identities=11%  Similarity=0.043  Sum_probs=127.2

Q ss_pred             cccceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee
Q psy4391          26 HTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        26 h~~~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      .........|+++|+ ++++...++.|..|+. ++. ...+......+..++++++|+.+++...++.|.+|+.+ ++..
T Consensus        43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~  119 (305)
T 3dr2_A           43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH  119 (305)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence            344567899999999 5667777889999987 444 33444445668899999999977766667889999986 4432


Q ss_pred             eeec---CC-CcceEEEEECCCCCEEEE----eec-------------CCcEEEEECCCCceeeeccCCCCCeEEEEEcC
Q psy4391         105 KTLK---GH-SNYVFCCNFNPQSNLIVS----GSF-------------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR  163 (231)
Q Consensus       105 ~~~~---~~-~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~  163 (231)
                      ....   .. ...+..+.++++|+++++    |..             .+.|..+|..+++.....  .......++|+|
T Consensus       120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~sp  197 (305)
T 3dr2_A          120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSP  197 (305)
T ss_dssp             EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECT
T ss_pred             EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcC
Confidence            2211   10 123456889999998886    332             246788887666543332  334567899999


Q ss_pred             CCCeEEEEecC------CeEEEEeCCCCcee--eeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         164 DGSLIVSSSYD------GLCRIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       164 ~~~~l~~~~~d------g~i~v~d~~~~~~~--~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      |++.|+.+...      +.|.+|++......  ..+..........++++++|++. +++. +.|.+||.
T Consensus       198 dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~-~gv~~~~~  265 (305)
T 3dr2_A          198 DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSG-TGVCVFDS  265 (305)
T ss_dssp             TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCS-SEEEEECT
T ss_pred             CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecC-CcEEEECC
Confidence            99988777655      68999998754311  11111111223457889999844 4444 45888886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.49  E-value=2.6e-11  Score=95.50  Aligned_cols=190  Identities=13%  Similarity=0.066  Sum_probs=129.7

Q ss_pred             EEECCCCCEEEEEeCCC--cEEEeecCCCcEEEEE----ecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeee
Q psy4391          33 VKFSPNGEWLASSSADK--LIKIWGAYDGKFEKTI----SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        33 ~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      ++|+++++.|+++..++  .|.+++...+.....+    ......+..++++|++..|+.+..++.|+.||..++.....
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            88999999888887765  7888887655443333    21334577889999555566677788999999987653222


Q ss_pred             ----ecCCCcce-E-EEEECCC-CCEEEEeecCCcEEEEECCCCceeeeccCC---------------CCCeEEEEEcCC
Q psy4391         107 ----LKGHSNYV-F-CCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAH---------------SDPVSAVHFNRD  164 (231)
Q Consensus       107 ----~~~~~~~v-~-~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---------------~~~v~~~~~~~~  164 (231)
                          ........ . .++++|+ +.++++-..++.|+.|+....  +..+..+               -.....++++|+
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d  333 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED  333 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence                11111111 2 7899995 566666667888999997643  2222111               134788999999


Q ss_pred             CCeEEEEe-cCCeEEEEeCCCCceeeeeecCC--------------CCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         165 GSLIVSSS-YDGLCRIWDTASGQCLKTLIDDD--------------NPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       165 ~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~--------------~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      |+++++-. .++.|+.||+.+++.. .+....              -.....++++++|.++++-..+++|+.++.
T Consensus       334 G~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          334 GNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            99777777 7899999998777643 332210              123577999999988888888889988763

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.48  E-value=2.5e-12  Score=99.80  Aligned_cols=133  Identities=12%  Similarity=0.064  Sum_probs=107.0

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      +.. |+.++|  ++++|+++ .++.|++||+.+.........+..++.++.+.+.  .++++..||.|.+||++++....
T Consensus        87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~  160 (388)
T 1xip_A           87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ  160 (388)
T ss_dssp             CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc
Confidence            455 999999  99999998 7899999998776665566666677888777654  38888999999999999776543


Q ss_pred             eecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce--eeec------c---CCCCCeEEEEEcCCCCeEEE
Q psy4391         106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC--LKTL------P---AHSDPVSAVHFNRDGSLIVS  170 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~~  170 (231)
                          ....+.+++|+|+|  ++.|..||.+++|+...+..  ...+      .   .|...|.++.|.+++.++++
T Consensus       161 ----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          161 ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence                23579999999999  67899999999999887764  3344      2   35678999999999988876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.48  E-value=4.8e-12  Score=99.46  Aligned_cols=194  Identities=10%  Similarity=0.074  Sum_probs=127.6

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEeecCCCcEEEEEecc-------cccEEEEEECCCCCEEEEecC--CCc
Q psy4391          32 SVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGH-------KLGISDVAWSSDSRLLVSGSD--DKT   92 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--~g~   92 (231)
                      .++++|||++++.+.          .++.|.++|..+.+....+.-.       ......+.++|||++++++..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            899999999887765          3678999999998887776421       123456799999999988764  578


Q ss_pred             EEEEeCCCceeeeeecCCCc-------ceEEEEECCCCC-------------------------------------EEEE
Q psy4391          93 LKIWELSSGKCLKTLKGHSN-------YVFCCNFNPQSN-------------------------------------LIVS  128 (231)
Q Consensus        93 i~~~d~~~~~~~~~~~~~~~-------~v~~~~~~~~~~-------------------------------------~l~~  128 (231)
                      |.+.|+.+.+.+..+.....       ....+.++++|+                                     .++.
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~  281 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW  281 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence            99999999887766653211       000122333333                                     3333


Q ss_pred             eecCCcEEEEECCCCcee--eeccC----------CCCCeEEEEEcCCCCeEEEEec----------CCeEEEEeCCCCc
Q psy4391         129 GSFDESVRIWDVRTGKCL--KTLPA----------HSDPVSAVHFNRDGSLIVSSSY----------DGLCRIWDTASGQ  186 (231)
Q Consensus       129 ~~~d~~i~v~d~~~~~~~--~~~~~----------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~v~d~~~~~  186 (231)
                      ....+.+.+.|+..+...  ..+..          .......++++|+++.+++...          ++.|.++|+.+.+
T Consensus       282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k  361 (426)
T 3c75_H          282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE  361 (426)
T ss_dssp             EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence            333445555555432210  00000          0011123688999887776642          3579999999999


Q ss_pred             eeeeeecCCCCCeEEEEECCCCC-EEEEEe-CCCeEEEEeCCC
Q psy4391         187 CLKTLIDDDNPPVSFVKFSPNGK-YILAAT-LDNTLKLWDSYP  227 (231)
Q Consensus       187 ~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s-~d~~v~vwd~~~  227 (231)
                      .+.++....  ....++|+|||+ ++++.. .++.|.|+|...
T Consensus       362 vv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          362 RINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             EEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence            888875443  246789999999 888887 489999999743

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.47  E-value=1.5e-10  Score=85.11  Aligned_cols=205  Identities=10%  Similarity=0.032  Sum_probs=139.8

Q ss_pred             cceeEEeeccccc--ceEEEEECCCCCEEEEEeC--CCcEEEeecCCCcEEEEEeccc-ccEEEEEECCCCCEEEEecCC
Q psy4391          16 NYVLKFTLAGHTK--AVSSVKFSPNGEWLASSSA--DKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSRLLVSGSDD   90 (231)
Q Consensus        16 ~~~~~~~~~~h~~--~i~~~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~   90 (231)
                      .+.+..++ .|..  ....+.|++++.+.++.+.  ++.|+++|..+++....+.-.. .....+++.. ++..++.-.+
T Consensus         8 ~~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~   85 (266)
T 2iwa_A            8 IVEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTC
T ss_pred             CceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecC
Confidence            34444444 3443  3579999998755454443  5799999999999888765222 1223455542 2344555568


Q ss_pred             CcEEEEeCCCceeeeeecCC-CcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCC-----CeEEEEEcCC
Q psy4391          91 KTLKIWELSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD-----PVSAVHFNRD  164 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----~v~~~~~~~~  164 (231)
                      +.+.++|.++.+.+..+... ...   ..++++++.++.+..++.|.++|..+.+.+..+.....     .+..+.|. +
T Consensus        86 ~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d  161 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N  161 (266)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             CEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence            89999999999888887643 222   23556777777777788999999999887777664321     35677887 6


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeeeecC------------CCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCC
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSY  226 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~  226 (231)
                      +..++....++.|.+.|+.+++.+..+...            .....+.++++|+++.+++++ ..+++.+.+..
T Consensus       162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            765555556789999999999988777432            112457899999987665544 56788877753

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.47  E-value=1.9e-14  Score=111.93  Aligned_cols=179  Identities=15%  Similarity=0.044  Sum_probs=101.0

Q ss_pred             CCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcc-eE-
Q psy4391          38 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY-VF-  115 (231)
Q Consensus        38 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-v~-  115 (231)
                      ++..+++++.||.|+.||..+++....+..  ..+.+..+..++..+++++.|+.|+.||.++++.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            577889999999999999999988877765  34444445567777888889999999999888765555432111 10 


Q ss_pred             EEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCC
Q psy4391         116 CCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD  195 (231)
Q Consensus       116 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~  195 (231)
                      ...+. .+..+++++.++.++.||.++|+.+..+..+.    ...++|++..+++++.++.+..||..+++.+-.+....
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~  160 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD  160 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence            00111 34567788889999999999999877766543    23456788889999999999999999987654432111


Q ss_pred             CCCeEEEEECCCC---CEEEEEeCCCeEEEEeCC
Q psy4391         196 NPPVSFVKFSPNG---KYILAATLDNTLKLWDSY  226 (231)
Q Consensus       196 ~~~i~~~~~s~~g---~~l~~~s~d~~v~vwd~~  226 (231)
                         ....+++++.   ..+++++.||.|..||..
T Consensus       161 ---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~  191 (369)
T 2hz6_A          161 ---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSE  191 (369)
T ss_dssp             ---ECCBCCCCCTTCCCCEEEEETSCEEEEECTT
T ss_pred             ---ccCccccCCccccceEEEECCCCEEEEEECC
Confidence               1112334432   457778889999999964

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.47  E-value=3.5e-11  Score=91.03  Aligned_cols=189  Identities=12%  Similarity=0.090  Sum_probs=124.5

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecc----cccEEEEEECCCCCEEEE----ecC--------
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSRLLVS----GSD--------   89 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~~--------   89 (231)
                      +...+..++++++|+++++...++.|.+|+.. ++........    ...+.+++++++|+.+++    +..        
T Consensus        84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~  162 (305)
T 3dr2_A           84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA  162 (305)
T ss_dssp             SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred             CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence            45568899999999977665556789999875 5433222111    123567899999998776    332        


Q ss_pred             -----CCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecC------CcEEEEECCCCcee--eec-cCCCCC
Q psy4391          90 -----DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVRTGKCL--KTL-PAHSDP  155 (231)
Q Consensus        90 -----~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~--~~~-~~~~~~  155 (231)
                           .+.|..+|.++++.....  .......++|+|+++.|+.+...      +.|.+||+..+...  ..+ ....+.
T Consensus       163 ~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~  240 (305)
T 3dr2_A          163 DPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGL  240 (305)
T ss_dssp             CCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSC
T ss_pred             ccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCC
Confidence                 246777887666543332  23445678999999988777665      68999998754311  111 112334


Q ss_pred             eEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEE
Q psy4391         156 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL  222 (231)
Q Consensus       156 v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~v  222 (231)
                      ...++++++|++.+ ++.+ .|.+|+.. ++.+..+....  .+..++|+++++.|++++.++-.++
T Consensus       241 pdgi~~d~~G~lwv-~~~~-gv~~~~~~-g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          241 PDGFCVDRGGWLWS-SSGT-GVCVFDSD-GQLLGHIPTPG--TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             CCSEEECTTSCEEE-CCSS-EEEEECTT-SCEEEEEECSS--CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CCeEEECCCCCEEE-ecCC-cEEEECCC-CCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            55688999999544 4444 49999984 55555554433  3677899999999988887654443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.45  E-value=2.4e-10  Score=87.30  Aligned_cols=184  Identities=13%  Similarity=0.068  Sum_probs=122.4

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec----ccccEEEEEECCCCCEEEEecC------CCcEEEE
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG----HKLGISDVAWSSDSRLLVSGSD------DKTLKIW   96 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~------~g~i~~~   96 (231)
                      ...+.+++|+++|+++++. .+ .|.+|+..+++.......    ....+.+++++|+|+++++...      .+.|..+
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~  166 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  166 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEE
Confidence            3568899999999877764 34 488999877765433221    1235789999999987665432      2456666


Q ss_pred             eCCCceeeeeecCCCcceEEEEECCCCCEEEEe-ecCCcEEEEECC--CC-ce-----eeeccCCCCCeEEEEEcCCCCe
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVR--TG-KC-----LKTLPAHSDPVSAVHFNRDGSL  167 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~  167 (231)
                      +  +++... +.........++|+|+++.++.+ ..++.|.+||+.  ++ ..     ...+......+..++++++|.+
T Consensus       167 ~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l  243 (326)
T 2ghs_A          167 A--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI  243 (326)
T ss_dssp             E--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred             e--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCE
Confidence            6  444332 22222345678999999876555 456889999986  55 31     2222223345678999999987


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEEC-CCCCEEEEEeCC
Q psy4391         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLD  217 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~s~d  217 (231)
                      +++...++.|..||. +++.+..+.. ....+.+++|+ ++++.|++++..
T Consensus       244 wva~~~~~~v~~~d~-~g~~~~~i~~-~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          244 WNARWGEGAVDRYDT-DGNHIARYEV-PGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEEEETTTEEEEECT-TCCEEEEEEC-SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EEEEeCCCEEEEECC-CCCEEEEEEC-CCCCcEEEEEecCCCCEEEEEecC
Confidence            777666789999998 5665555443 33457889998 898877666543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.44  E-value=1.1e-11  Score=104.86  Aligned_cols=192  Identities=14%  Similarity=0.067  Sum_probs=124.6

Q ss_pred             EEEEECCCCCEEEEEeCCCc--------------EEEeecCCCcE--EEEEec--ccccEEEEEECCCCCEEEEecCCC-
Q psy4391          31 SSVKFSPNGEWLASSSADKL--------------IKIWGAYDGKF--EKTISG--HKLGISDVAWSSDSRLLVSGSDDK-   91 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~dg~--------------i~i~~~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~g-   91 (231)
                      ..++|+|| +.|+.+..++.              |++|+..++..  ...+..  +...+..+.|+|||++|+..+.++ 
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence            57889999 98887776553              88888866542  222222  222478899999999988776543 


Q ss_pred             ----cEEEEeCCCc--eeeeeecCCCcceEEEEECCCCCEEEEeecC----CcEEEEECCCC--ceeeeccCCCCCeEEE
Q psy4391          92 ----TLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTG--KCLKTLPAHSDPVSAV  159 (231)
Q Consensus        92 ----~i~~~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~--~~~~~~~~~~~~v~~~  159 (231)
                          .|++||+.++  +....+..+....... ++|+++.|+..+.+    +.|.+||+.++  +....+..+...+..+
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~  369 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESV  369 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEE
T ss_pred             CCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEE
Confidence                7999999876  3134444333333333 34888888877653    45999999874  3333334444456677


Q ss_pred             EEcCCCCeEEEEecCCeEEEEeCC-CCceeeeeecCCCCCeEEEEECCCCCEEEEEe----CCCeEEEEeC
Q psy4391         160 HFNRDGSLIVSSSYDGLCRIWDTA-SGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT----LDNTLKLWDS  225 (231)
Q Consensus       160 ~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s----~d~~v~vwd~  225 (231)
                      .++ ++.++++...|+..++|.+. +++....+.......+..+.++|+++.|+...    ..+.|.+||.
T Consensus       370 ~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          370 GIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             EEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             EEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            777 56677788888876666433 34444444333345577888999998666432    2468888885

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=5.9e-10  Score=85.11  Aligned_cols=190  Identities=16%  Similarity=0.066  Sum_probs=126.5

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy4391          29 AVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        29 ~i~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~  107 (231)
                      -..++.|+|+++ ++++...++.|..|+..++... .+. ....+.+++|+++++++++. .+ .|.+||.++++.....
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence            346889999755 5556667789999998766543 232 23568899999999877665 33 4999999877653322


Q ss_pred             cC----CCcceEEEEECCCCCEEEEeec------CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCe
Q psy4391         108 KG----HSNYVFCCNFNPQSNLIVSGSF------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGL  176 (231)
Q Consensus       108 ~~----~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~  176 (231)
                      ..    ....+..+.++|+|+++++...      .+.|..++  +++. ..+.........++|+|+++.++.+ +.++.
T Consensus       126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            21    1245788999999997775542      24566666  4543 2222223456789999999877554 45689


Q ss_pred             EEEEeCC--CC-cee--eeeec--CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         177 CRIWDTA--SG-QCL--KTLID--DDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       177 i~v~d~~--~~-~~~--~~~~~--~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      |.+||+.  ++ +..  ..+..  ........++++++|.++++...++.|.+||.
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            9999985  55 321  11211  12233567899999987777766789999986

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=1.6e-11  Score=94.44  Aligned_cols=196  Identities=12%  Similarity=0.093  Sum_probs=128.8

Q ss_pred             ccccceEEEEECCCCCEEEEEeC-----CCcEEEeecCCCcEEEEEecc------cccEEEEEECCCCCEE-EEec---C
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSA-----DKLIKIWGAYDGKFEKTISGH------KLGISDVAWSSDSRLL-VSGS---D   89 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l-~~~~---~   89 (231)
                      +|-..+..++++++|+++++-..     ++.|.+||..+++....+...      ...+.++++++++..+ ++..   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            35568999999999886665432     578999999888766655421      1245789999865554 4444   5


Q ss_pred             CCcEEEEeCCCceeeeeecCC-----------------------------CcceEEEEECCCCCEEEEeecCC-cEEEEE
Q psy4391          90 DKTLKIWELSSGKCLKTLKGH-----------------------------SNYVFCCNFNPQSNLIVSGSFDE-SVRIWD  139 (231)
Q Consensus        90 ~g~i~~~d~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~l~~~~~d~-~i~v~d  139 (231)
                      ++.|.+||+.+++..+.+..|                             ...+..++++|+++.|+.+...+ .+..++
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            789999999877655544321                             01256799999999888877665 555555


Q ss_pred             CC---CCce-----ee--eccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC
Q psy4391         140 VR---TGKC-----LK--TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK  209 (231)
Q Consensus       140 ~~---~~~~-----~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~  209 (231)
                      ..   .+..     ..  ....+.+....++++++|.++++...++.|.+||..+++...............++++++|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY  303 (343)
T ss_dssp             HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred             HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence            32   1110     00  00112234456899999999888888999999998556533222222233467899999998


Q ss_pred             EEEEEeCCCeE
Q psy4391         210 YILAATLDNTL  220 (231)
Q Consensus       210 ~l~~~s~d~~v  220 (231)
                      ++++.+..+++
T Consensus       304 l~v~~~~~~~~  314 (343)
T 2qe8_A          304 LYFDCNQLHHS  314 (343)
T ss_dssp             EEEEECCGGGS
T ss_pred             EEEEeCccccc
Confidence            88777754444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.41  E-value=3.7e-10  Score=87.85  Aligned_cols=184  Identities=10%  Similarity=0.033  Sum_probs=125.5

Q ss_pred             EECCCCCEEEEEeC--CC---cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec----------CCCcEEEEeC
Q psy4391          34 KFSPNGEWLASSSA--DK---LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWEL   98 (231)
Q Consensus        34 ~~~~~~~~l~~~~~--dg---~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~g~i~~~d~   98 (231)
                      ...|++++++.+..  .+   .|.++|..+++....+.....+  .++++||+++++++.          .++.|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            34578887777653  22   7899999888887777654433  899999999998875          3578999999


Q ss_pred             CCceeeeeecCC-------CcceEEEEECCCCCEEEEeec--CCcEEEEECCCCceeee-ccCCCCCeEEEEEcCCC-Ce
Q psy4391          99 SSGKCLKTLKGH-------SNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKT-LPAHSDPVSAVHFNRDG-SL  167 (231)
Q Consensus        99 ~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~  167 (231)
                      .+.+.+..+...       ......+.++|+|++++.++.  ++.|.++| .+++.+.. +... +.   +.+.|++ +.
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~---~~~~~~~~~~  179 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TC---YHIHPGAPST  179 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ce---EEEEeCCCce
Confidence            987776665432       123447889999999998874  47899999 99988777 5532 22   3455555 45


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeec----CCCCC-eEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         168 IVSSSYDGLCRIWDTASGQCLKTLID----DDNPP-VSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~----~~~~~-i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +++.+.||.+.++|. +++.......    ....+ .....+.+++..++..+.++.+.+.|.
T Consensus       180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~  241 (373)
T 2mad_H          180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADI  241 (373)
T ss_pred             EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEec
Confidence            566778999999999 7765532210    11112 122455666655555556778887775

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.41  E-value=4.1e-11  Score=92.79  Aligned_cols=187  Identities=11%  Similarity=0.125  Sum_probs=131.7

Q ss_pred             EEECCCCCEEEEEeC-----CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec----------CCCcEEEEe
Q psy4391          33 VKFSPNGEWLASSSA-----DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWE   97 (231)
Q Consensus        33 ~~~~~~~~~l~~~~~-----dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~g~i~~~d   97 (231)
                      ....|++++++....     ++.|.+.|..+.+....+.....+ . ++++|||++++++.          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            445789998888765     679999999999988888755554 4 99999999987775          357899999


Q ss_pred             CCCceeeeeecCCC-------cceEEEEECCCCCEEEEeec--CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeE
Q psy4391          98 LSSGKCLKTLKGHS-------NYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus        98 ~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  168 (231)
                      ..+.+.+..+....       .....+.++|||++++.+..  ++.|.++|+.+++.+..+....  . ...+....+.+
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~  192 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTF  192 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCcee
Confidence            99988877764221       12345789999999988864  6889999999999888875432  1 12233344567


Q ss_pred             EEEecCCeEEEEeCCC-Cceeeee---ecCCCCCe-EEEEE-CCCCCEEEEEeCCCeEEEEeC
Q psy4391         169 VSSSYDGLCRIWDTAS-GQCLKTL---IDDDNPPV-SFVKF-SPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       169 ~~~~~dg~i~v~d~~~-~~~~~~~---~~~~~~~i-~~~~~-s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ++.+.||.+.+.++.+ ++.....   ......++ ....| .++|++++ .+.+|+|.+.|.
T Consensus       193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~  254 (386)
T 3sjl_D          193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDL  254 (386)
T ss_dssp             EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEEC
T ss_pred             EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEEC
Confidence            7778899988888876 5542211   11111222 12345 47886555 556899999996

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.38  E-value=5e-10  Score=81.61  Aligned_cols=195  Identities=10%  Similarity=0.099  Sum_probs=133.2

Q ss_pred             cceeEEeeccccc--ceEEEEECCCCCEEEEEeCCC--cEEEeecCCCcEEEEEecccccEEEEEECCCCCEE-EEecCC
Q psy4391          16 NYVLKFTLAGHTK--AVSSVKFSPNGEWLASSSADK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDD   90 (231)
Q Consensus        16 ~~~~~~~~~~h~~--~i~~~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~   90 (231)
                      .+.+..++ .|..  ....+.|+ ++.+..+.+.+|  .|+++|..+++....+.-.. ........++++.| ...-.+
T Consensus        30 ~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~  106 (262)
T 3nol_A           30 DYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKN  106 (262)
T ss_dssp             EEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSS
T ss_pred             ceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeC
Confidence            34444444 3443  35789998 666666666665  89999999999888775432 22222222334444 444568


Q ss_pred             CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC-----CCeEEEEEcCCC
Q psy4391          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-----DPVSAVHFNRDG  165 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~  165 (231)
                      +.+.+||.++.+.+..+...... ..  +.+++..|+.+..++.|.++|..+.+.+..+....     ..+..+.+. +|
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~~eG-~g--lt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G  182 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYDGEG-WG--LTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG  182 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCC-CC--EEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred             CEEEEEECccCcEEEEEECCCCc-eE--EecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence            89999999999988888753322 22  33567777777778889999999988877765432     234457776 67


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeeeecC-----------CCCCeEEEEECCCCCEEEEEeCC
Q psy4391         166 SLIVSSSYDGLCRIWDTASGQCLKTLIDD-----------DNPPVSFVKFSPNGKYILAATLD  217 (231)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-----------~~~~i~~~~~s~~g~~l~~~s~d  217 (231)
                      +.++....++.|.+.|..+++.+..+...           .....+.||++|+++.|++.+..
T Consensus       183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          183 EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            76666667889999999999988776432           12245889999999888888754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.38  E-value=9e-11  Score=90.29  Aligned_cols=197  Identities=10%  Similarity=0.096  Sum_probs=127.4

Q ss_pred             cceEEEEECCCCCEEEEEe--CCCcEEEeecCCCcEEEEEe-------cccccEEEEEECCCCCEEEEecC-----CCcE
Q psy4391          28 KAVSSVKFSPNGEWLASSS--ADKLIKIWGAYDGKFEKTIS-------GHKLGISDVAWSSDSRLLVSGSD-----DKTL   93 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~--~dg~i~i~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~-----~g~i   93 (231)
                      .....++++++|+.+++..  .++.+++|.+.+++. ..+.       .+...+..++++++++.+++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            5788999999999888753  234245555444432 2221       23356889999999876665433     5789


Q ss_pred             EEEeCCCceeeeeecCC------CcceEEEEECCCCCEE-EEee---cCCcEEEEECCCCceeeeccCC-----------
Q psy4391          94 KIWELSSGKCLKTLKGH------SNYVFCCNFNPQSNLI-VSGS---FDESVRIWDVRTGKCLKTLPAH-----------  152 (231)
Q Consensus        94 ~~~d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l-~~~~---~d~~i~v~d~~~~~~~~~~~~~-----------  152 (231)
                      .+||+++++.++.+...      ...+..+++++++..+ ++..   .++.|.+||+.+++....+..|           
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99999988866555421      2345678898865444 5544   5788999999877654443221           


Q ss_pred             ------------------CCCeEEEEEcCCCCeEEEEecCC-eEEEEeCC---CCc-----eeeeeec-CCCCCeEEEEE
Q psy4391         153 ------------------SDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTA---SGQ-----CLKTLID-DDNPPVSFVKF  204 (231)
Q Consensus       153 ------------------~~~v~~~~~~~~~~~l~~~~~dg-~i~v~d~~---~~~-----~~~~~~~-~~~~~i~~~~~  204 (231)
                                        ...+..++++|+++.|+.+..++ .+..++..   .+.     ....+.. ........+++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~  255 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI  255 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence                              02357899999999888877665 55555431   110     0000000 11112345889


Q ss_pred             CCCCCEEEEEeCCCeEEEEeC
Q psy4391         205 SPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       205 s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +++|.++++...++.|.+||.
T Consensus       256 d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          256 DKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             CTTCCEEEEEGGGTEEEEEET
T ss_pred             CCCCCEEEEccCCCeEEEEEC
Confidence            999999888888999999997

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.36  E-value=3.7e-10  Score=88.38  Aligned_cols=188  Identities=14%  Similarity=0.189  Sum_probs=128.7

Q ss_pred             CCCCEEEE-EeCCCcEEEeecCCC----cEEEEEe-------cccccEEEEEECCCCCEEEEecCC------CcEEEEeC
Q psy4391          37 PNGEWLAS-SSADKLIKIWGAYDG----KFEKTIS-------GHKLGISDVAWSSDSRLLVSGSDD------KTLKIWEL   98 (231)
Q Consensus        37 ~~~~~l~~-~~~dg~i~i~~~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~~------g~i~~~d~   98 (231)
                      +++++|+. +..++.|.++|..+.    +..+.+.       ........+...|+| .++++..+      +.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77887654 667789999998644    4455552       111245567888999 66665555      78999999


Q ss_pred             CCceeeeeecCCC---cceEEEEECCCCCEEEEee-------------------cCCcEEEEECCCCceeeeccCCC--C
Q psy4391          99 SSGKCLKTLKGHS---NYVFCCNFNPQSNLIVSGS-------------------FDESVRIWDVRTGKCLKTLPAHS--D  154 (231)
Q Consensus        99 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~-------------------~d~~i~v~d~~~~~~~~~~~~~~--~  154 (231)
                      ++.+.+..+....   .....+.|+|+++.+++..                   .+.+|.+||+.+++.+..+....  .
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            9999888776321   2234577899999998885                   36889999999888777766531  2


Q ss_pred             CeEEEEE--cCCCCeEEEEec------CCeEEEEeCCCCcee--eee--ec---CC------------CCCeEEEEECCC
Q psy4391         155 PVSAVHF--NRDGSLIVSSSY------DGLCRIWDTASGQCL--KTL--ID---DD------------NPPVSFVKFSPN  207 (231)
Q Consensus       155 ~v~~~~~--~~~~~~l~~~~~------dg~i~v~d~~~~~~~--~~~--~~---~~------------~~~i~~~~~s~~  207 (231)
                      ....+.|  +|+++++++++.      ++.|.+|....++..  +.+  ..   ..            ......+.+|+|
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            3455656  999998887764      567876654433211  111  00   00            123467889999


Q ss_pred             CCEEEEEeC-CCeEEEEeC
Q psy4391         208 GKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       208 g~~l~~~s~-d~~v~vwd~  225 (231)
                      |++|+++.. .+.|.+||.
T Consensus       332 GrfLYVSnrg~d~VavfdV  350 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDI  350 (462)
T ss_dssp             SCEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEe
Confidence            999988876 679999995

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.35  E-value=1.2e-10  Score=90.09  Aligned_cols=190  Identities=11%  Similarity=0.006  Sum_probs=120.4

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEeecCCCcEEEEEecc-------cccEEEEEECCCCCEEEEecC--CCc
Q psy4391          32 SVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGH-------KLGISDVAWSSDSRLLVSGSD--DKT   92 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--~g~   92 (231)
                      .+.++||+++++.+.          .++.|.+||..+++....+...       ......++++|||++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999888875          3688999999999988887532       123456899999999988764  456


Q ss_pred             EEE--EeCCCceeeeeecCC------------------CcceEEEEE--------------------------CCCCCEE
Q psy4391          93 LKI--WELSSGKCLKTLKGH------------------SNYVFCCNF--------------------------NPQSNLI  126 (231)
Q Consensus        93 i~~--~d~~~~~~~~~~~~~------------------~~~v~~~~~--------------------------~~~~~~l  126 (231)
                      +.+  +|..+   +..+...                  .+.+..+..                          .+++..+
T Consensus       149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~  225 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence            888  88865   2222110                  000000111                          2222333


Q ss_pred             EEeecCCcEEEEECCCCc--eeeeccCC----------CCCeEEEEEcCCCCeEEEEec-C--------CeEEEEeCCCC
Q psy4391         127 VSGSFDESVRIWDVRTGK--CLKTLPAH----------SDPVSAVHFNRDGSLIVSSSY-D--------GLCRIWDTASG  185 (231)
Q Consensus       127 ~~~~~d~~i~v~d~~~~~--~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~-d--------g~i~v~d~~~~  185 (231)
                      +..+. +.+.+.|+..+.  .+..+...          ......++++|+++.++++.. .        +.+.++|+.++
T Consensus       226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~  304 (368)
T 1mda_H          226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence            33333 667777775432  22222110          011112679999998886543 2        35669999999


Q ss_pred             ceeeeeecCCCCCeEEEEECCCCCE-EEEEe-CCCeEEEEeCCC
Q psy4391         186 QCLKTLIDDDNPPVSFVKFSPNGKY-ILAAT-LDNTLKLWDSYP  227 (231)
Q Consensus       186 ~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~s-~d~~v~vwd~~~  227 (231)
                      +.+..+....  ....++|+|||++ +++.. .++.|.++|...
T Consensus       305 ~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          305 QTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             CEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             eEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence            9887775443  3467899999985 45555 489999999743

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.34  E-value=1.3e-10  Score=91.31  Aligned_cols=183  Identities=13%  Similarity=0.137  Sum_probs=129.2

Q ss_pred             CCCCEEEEEeCC-----CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec----------CCCcEEEEeCCCc
Q psy4391          37 PNGEWLASSSAD-----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWELSSG  101 (231)
Q Consensus        37 ~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~g~i~~~d~~~~  101 (231)
                      +++++++++...     +.|.++|..+.+....+.....+  .++++||+++++++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            477777665543     69999999999998888755555  899999999988776          4678999999998


Q ss_pred             eeeeeecCC-------CcceEEEEECCCCCEEEEeec--CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCC-CeEEEE
Q psy4391         102 KCLKTLKGH-------SNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSS  171 (231)
Q Consensus       102 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~  171 (231)
                      +.+..+...       ......+.++|+|++++.+..  ++.|.++|+.+++.+..+....  .  ....|++ ..+++.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~  235 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMN  235 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEE
Confidence            887766421       122345789999999998874  5789999999999888776532  1  2333433 455666


Q ss_pred             ecCCeEEEEeCCCCceeeee---ecCCCCC-eEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         172 SYDGLCRIWDTASGQCLKTL---IDDDNPP-VSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       172 ~~dg~i~v~d~~~~~~~~~~---~~~~~~~-i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +.||.+.+.++.+++.....   ......+ ...+.+++++..++..+..+.|.+.|.
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~  293 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADL  293 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEE
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEec
Confidence            77888888887655543211   1111111 123567899888888888888888885

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.32  E-value=6.2e-09  Score=75.23  Aligned_cols=197  Identities=10%  Similarity=0.083  Sum_probs=133.4

Q ss_pred             CccceeEEeecccc--cceEEEEECCCCCEEEEEeCC--CcEEEeecCCCcEEEEEeccccc-EEEEEECCCCCEEEEec
Q psy4391          14 KPNYVLKFTLAGHT--KAVSSVKFSPNGEWLASSSAD--KLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSRLLVSGS   88 (231)
Q Consensus        14 ~~~~~~~~~~~~h~--~~i~~~~~~~~~~~l~~~~~d--g~i~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~   88 (231)
                      .-.+.+..+. .|.  .....+.|+. +.+..+.+..  +.|+.+|..+++....+.-.... -..++... ++.....-
T Consensus         6 ~~~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw   82 (243)
T 3mbr_X            6 TQGYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTW   82 (243)
T ss_dssp             BCCEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEES
T ss_pred             ccceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEe
Confidence            3344554444 454  4467899986 5555666665  48999999999988877533221 12233332 33344556


Q ss_pred             CCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCC-----CCeEEEEEcC
Q psy4391          89 DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS-----DPVSAVHFNR  163 (231)
Q Consensus        89 ~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~  163 (231)
                      .++.+.+||.++.+.+..+...... ..++  +++..|+.+..++.|.++|..+.+.+..+....     ..+..+.+. 
T Consensus        83 ~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-  158 (243)
T 3mbr_X           83 RNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-  158 (243)
T ss_dssp             SSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             eCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence            7889999999999988888754332 2333  456667767778899999999988877765532     234556665 


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCceeeeeecC------------CCCCeEEEEECCCCCEEEEEeCC
Q psy4391         164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLD  217 (231)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~~i~~~~~s~~g~~l~~~s~d  217 (231)
                      +|+.++....+..|.+.|..+++.+..+...            .....+.||++|+++.|++.+.-
T Consensus       159 ~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          159 NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            6776666656889999999999988776422            12346889999998888777753

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.31  E-value=5.5e-10  Score=86.52  Aligned_cols=191  Identities=13%  Similarity=0.164  Sum_probs=124.7

Q ss_pred             EEEEECCCCCEEEEEeC--CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC-ceeeeee
Q psy4391          31 SSVKFSPNGEWLASSSA--DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCLKTL  107 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~-~~~~~~~  107 (231)
                      ..++|+|||++++++..  ++.|.++|..+++....+....  + ...+....+.+++.+.||.+.+.++.+ ++.....
T Consensus       140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~  216 (386)
T 3sjl_D          140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH  216 (386)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred             ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee
Confidence            35899999999988764  6899999999998888775321  1 122333345566777788888888765 4432111


Q ss_pred             c----CCCcceE-EEEE-CCCCCEEEEeecCCcEEEEECCCCc--eeeecc----------CCCCCeEEEEEcCCCCeEE
Q psy4391         108 K----GHSNYVF-CCNF-NPQSNLIVSGSFDESVRIWDVRTGK--CLKTLP----------AHSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus       108 ~----~~~~~v~-~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~----------~~~~~v~~~~~~~~~~~l~  169 (231)
                      .    .....+. ...| .++|++++ .+.+|.+++.|+.++.  ....+.          ...+....++++|+++.++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ly  295 (386)
T 3sjl_D          217 TEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY  295 (386)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             cceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEE
Confidence            1    1111111 1244 35675555 5557999999997654  222221          0112333577899998887


Q ss_pred             EEec----------CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC-EEEEEe-CCCeEEEEeCCC
Q psy4391         170 SSSY----------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAAT-LDNTLKLWDSYP  227 (231)
Q Consensus       170 ~~~~----------dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s-~d~~v~vwd~~~  227 (231)
                      ....          ...|.++|+.+++.+.++....  ....+++++|++ +|+++. .++.|.++|...
T Consensus       296 V~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          296 LLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred             EEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            7643          2579999999999888876543  456799999997 666654 489999999743

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.31  E-value=7.9e-10  Score=80.61  Aligned_cols=180  Identities=9%  Similarity=0.040  Sum_probs=126.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccE--EEEEECCCCCEEEEecCCCcEEEEeCCCceeeee
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI--SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      ....+.|+ ++.+..+.+.+|.|+++|..+++....+ -. ...  ..++... ++.....-.++.+.+||.++.+.+..
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence            35788887 3556677788889999999999877666 22 222  2344443 23444555788999999999998888


Q ss_pred             ecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCC-----CeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSD-----PVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      +...... ..++  +++..|+.+..++.|.++|.++.+.+..+.....     .+..+.|. +|+.++....+..|.+.|
T Consensus       132 i~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID  207 (268)
T 3nok_A          132 TRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID  207 (268)
T ss_dssp             EECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred             EeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence            8753322 2333  5677777777789999999999988777654322     34567776 676666665788999999


Q ss_pred             CCCCceeeeeecC------------CCCCeEEEEECCCCCEEEEEeC
Q psy4391         182 TASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       182 ~~~~~~~~~~~~~------------~~~~i~~~~~s~~g~~l~~~s~  216 (231)
                      ..+++.+..+...            .....+.||++|+++.|++.+.
T Consensus       208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9999987776422            1235688999998877777664

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.24  E-value=1.2e-09  Score=91.61  Aligned_cols=190  Identities=13%  Similarity=0.077  Sum_probs=121.6

Q ss_pred             EEEEECCCCCEEEEEeCCC-------------cEEEeecCCCcE--EEEEec---ccccEEEEEECCCCCEEEEecC---
Q psy4391          31 SSVKFSPNGEWLASSSADK-------------LIKIWGAYDGKF--EKTISG---HKLGISDVAWSSDSRLLVSGSD---   89 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~dg-------------~i~i~~~~~~~~--~~~~~~---~~~~v~~~~~~~~~~~l~~~~~---   89 (231)
                      ..++|+ ||+.|+.+..+.             .|++|++.+...  ......   +......+.|+|||++|+....   
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  256 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST  256 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence            567899 999888877663             388888765542  222322   2334678899999998854332   


Q ss_pred             -CCcEEEEeCCCce-eeeeecCCCcceEEEEECCCCCEEEEee-cC---CcEEEEECCCCce--eeeccCCCCCeEEEEE
Q psy4391          90 -DKTLKIWELSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGS-FD---ESVRIWDVRTGKC--LKTLPAHSDPVSAVHF  161 (231)
Q Consensus        90 -~g~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d---~~i~v~d~~~~~~--~~~~~~~~~~v~~~~~  161 (231)
                       ...|+++|+.++. ....+..+....... +++++..|+..+ .+   +.|..+|+.++..  ...+..+...+.  .|
T Consensus       257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~  333 (693)
T 3iuj_A          257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TV  333 (693)
T ss_dssp             SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EE
T ss_pred             CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EE
Confidence             2489999997753 233444444433333 566666555443 33   5789999987653  234444544444  88


Q ss_pred             cCCCCeEEEEecC-C--eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC----CeEEEEeC
Q psy4391         162 NRDGSLIVSSSYD-G--LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD----NTLKLWDS  225 (231)
Q Consensus       162 ~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d----~~v~vwd~  225 (231)
                      +++++.|+....+ +  .|.+||+..+. ...+.......+..+.++++++.|+....+    +.|..||.
T Consensus       334 s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          334 HSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             EEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            9999988766654 4  68899987543 344433333446667788888877666544    78888885

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.21  E-value=3.6e-09  Score=82.85  Aligned_cols=185  Identities=16%  Similarity=0.222  Sum_probs=124.0

Q ss_pred             eEEEEECCCCCEEEEEeCC------CcEEEeecCCCcEEEEEeccccc---EEEEEECCCCCEEEEec------------
Q psy4391          30 VSSVKFSPNGEWLASSSAD------KLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSRLLVSGS------------   88 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~------------   88 (231)
                      -..+..+|+| +++++..+      |.+.++|..+.+....+......   -.++-|+|+++.+++..            
T Consensus       140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~  218 (462)
T 2ece_A          140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK  218 (462)
T ss_dssp             EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred             ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence            4466788999 65554333      68999999999888887632221   23477899999888874            


Q ss_pred             -------CCCcEEEEeCCCceeeeeecCCC--cceEEEEE--CCCCCEEEEeec------CCcEEEEECCCCce--eee-
Q psy4391          89 -------DDKTLKIWELSSGKCLKTLKGHS--NYVFCCNF--NPQSNLIVSGSF------DESVRIWDVRTGKC--LKT-  148 (231)
Q Consensus        89 -------~~g~i~~~d~~~~~~~~~~~~~~--~~v~~~~~--~~~~~~l~~~~~------d~~i~v~d~~~~~~--~~~-  148 (231)
                             .+..|.+||+.+++.+..+....  .....+.|  +|++++.+.++.      ++.|.+|....++.  ... 
T Consensus       219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI  298 (462)
T 2ece_A          219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI  298 (462)
T ss_dssp             TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE
Confidence                   36799999999888777776531  23444545  999998888775      55777655443321  000 


Q ss_pred             -ccC----------------CCCCeEEEEEcCCCCeEEEEec-CCeEEEEeCCC---CceeeeeecCCC---------C-
Q psy4391         149 -LPA----------------HSDPVSAVHFNRDGSLIVSSSY-DGLCRIWDTAS---GQCLKTLIDDDN---------P-  197 (231)
Q Consensus       149 -~~~----------------~~~~v~~~~~~~~~~~l~~~~~-dg~i~v~d~~~---~~~~~~~~~~~~---------~-  197 (231)
                       +..                .......+.++||+++|+++.. .+.|.+||+..   .+.+..+.....         . 
T Consensus       299 di~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~  378 (462)
T 2ece_A          299 EIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK  378 (462)
T ss_dssp             EECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred             eCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence             000                0234678999999999987765 57999999853   344444433211         0 


Q ss_pred             ---CeEEEEECCCCCEEEEEe
Q psy4391         198 ---PVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       198 ---~i~~~~~s~~g~~l~~~s  215 (231)
                         .-..++++|||++|+++.
T Consensus       379 ~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          379 LTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCCEEEEcCCCCEEEEEc
Confidence               124588999999999988

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.19  E-value=1.6e-07  Score=69.37  Aligned_cols=194  Identities=10%  Similarity=0.021  Sum_probs=121.1

Q ss_pred             cceEEEEECCCCCEEEEE-eCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEeCCCceeee
Q psy4391          28 KAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~~~~~~~  105 (231)
                      ..+..++|++++..|+.+ ..++.|..++.........+.........+++++++..++ +....+.|.+++++......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            356789999977666554 4567899999865544333333334678899999765554 44556789999987543222


Q ss_pred             eecCCCcceEEEEECCCCCEEEEeec---CCcEEEEECCCCceeeec-cCCCCCeEEEEEcCCCCeEEEE-ecCCeEEEE
Q psy4391         106 TLKGHSNYVFCCNFNPQSNLIVSGSF---DESVRIWDVRTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIW  180 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~v~  180 (231)
                      ...........++++|++..++.+..   .+.|..+++.... ...+ .........++++|++..|+.+ ...+.|.++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            22222245678999997666555543   3678888876432 2222 1223457889999987766554 456799999


Q ss_pred             eCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCC
Q psy4391         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSY  226 (231)
Q Consensus       181 d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~  226 (231)
                      |+..... ..+......+ ..++..  +..|+.+. .++.|.++|..
T Consensus       195 ~~~g~~~-~~~~~~~~~P-~gi~~d--~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          195 NPAQPGR-RKVLEGLQYP-FAVTSY--GKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             ETTEEEE-EEEEECCCSE-EEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             ecCCCce-EEEecCCCCc-eEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence            9975443 2232222222 456654  45555555 46799999863

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.14  E-value=1.8e-07  Score=69.12  Aligned_cols=184  Identities=6%  Similarity=-0.035  Sum_probs=112.3

Q ss_pred             CEEEEEeCCCcEEEeecCCCcE-----EEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEeCCCceeeeeecCCCcc
Q psy4391          40 EWLASSSADKLIKIWGAYDGKF-----EKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLKTLKGHSNY  113 (231)
Q Consensus        40 ~~l~~~~~dg~i~i~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~  113 (231)
                      .+|+.+. .+.|+.++......     ...+......+..++|+++++.|+ +...++.|..++.........+......
T Consensus         2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            3444444 34677777654321     112222234567899999766555 4455789999998765443333333345


Q ss_pred             eEEEEECCCCCEEEEe-ecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec---CCeEEEEeCCCCceee
Q psy4391         114 VFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY---DGLCRIWDTASGQCLK  189 (231)
Q Consensus       114 v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~  189 (231)
                      ...+++++++..++.+ ...+.|.++++..................++++|++..|+.+..   .+.|..+++.... ..
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence            7789999976555544 55678999998744322222222245788999997666655543   3688888876432 23


Q ss_pred             eeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         190 TLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       190 ~~~~~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      .+..........+++++++..|+.+.. .++|.++|.
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~  196 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP  196 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence            332222234577999998877766554 579999985

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.13  E-value=1e-08  Score=85.82  Aligned_cols=182  Identities=13%  Similarity=0.189  Sum_probs=124.5

Q ss_pred             EEEEECCCCCEEEEEeCCC-------------------cEEEeecCCCcEEEEEeccc---------ccEEEEEECCCC-
Q psy4391          31 SSVKFSPNGEWLASSSADK-------------------LIKIWGAYDGKFEKTISGHK---------LGISDVAWSSDS-   81 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~dg-------------------~i~i~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~-   81 (231)
                      ..+++++++.+++.+..++                   .|..+|..+++....+....         ....-+....+| 
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            3578889888888876654                   48889999998776654311         111122223366 


Q ss_pred             --CEEEEecCCCcEEEEeCCCceeeeeecCCC-c----------ce------------------------EEEEECCCCC
Q psy4391          82 --RLLVSGSDDKTLKIWELSSGKCLKTLKGHS-N----------YV------------------------FCCNFNPQSN  124 (231)
Q Consensus        82 --~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~-~----------~v------------------------~~~~~~~~~~  124 (231)
                        ..++.++.+|.++++|.++++.+..+.... .          .+                        ..++++|++.
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence              678899999999999999998765543211 0          00                        1356788888


Q ss_pred             EEEEeecC-------------------------------------------CcEEEEECCCCceeeeccCCCCCeEEEEE
Q psy4391         125 LIVSGSFD-------------------------------------------ESVRIWDVRTGKCLKTLPAHSDPVSAVHF  161 (231)
Q Consensus       125 ~l~~~~~d-------------------------------------------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  161 (231)
                      ++++...+                                           +.|..||+.+++.+..+... .++....+
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~  484 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTL  484 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEE
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcce
Confidence            88775431                                           67999999999988776532 23333445


Q ss_pred             cCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEE
Q psy4391         162 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA  213 (231)
Q Consensus       162 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  213 (231)
                      ...+..++.++.||.+++||+.+++.+..+.........-+.+.++|+.+++
T Consensus       485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            5677888889999999999999999888776544322233556778864443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.13  E-value=6.8e-09  Score=84.00  Aligned_cols=185  Identities=11%  Similarity=0.099  Sum_probs=126.4

Q ss_pred             CCCCEEEEEeC-CCcEEEeecCCCcEEEEEecc-cccEEEEEE-C-CCCCEEEEec------------------CCCcEE
Q psy4391          37 PNGEWLASSSA-DKLIKIWGAYDGKFEKTISGH-KLGISDVAW-S-SDSRLLVSGS------------------DDKTLK   94 (231)
Q Consensus        37 ~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~------------------~~g~i~   94 (231)
                      +||++++.... ++.|.+.|..+.+....+.-. ......+++ + |+++++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            38888876554 567999999998877755422 235778887 5 9999998874                  235788


Q ss_pred             EEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCC--------------------------------------cEE
Q psy4391          95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--------------------------------------SVR  136 (231)
Q Consensus        95 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------------------------------------~i~  136 (231)
                      +.|.++.+...++.... ....++++|+|+++++.+.+.                                      .|.
T Consensus       179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            99999988877766322 234567899999988887543                                      366


Q ss_pred             EEECCC--Cce-eeeccCCCCCeEEEEEcCCCCeEEEEe-cCCeEEEEeCCCCc------------eeeeeecCCCCCeE
Q psy4391         137 IWDVRT--GKC-LKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQ------------CLKTLIDDDNPPVS  200 (231)
Q Consensus       137 v~d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~------------~~~~~~~~~~~~i~  200 (231)
                      +.|.++  ++. +..+... ....++.++|||+++++++ .+.++.++|+.+.+            ....+.  -+..-.
T Consensus       258 VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~  334 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGPL  334 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEE
T ss_pred             EEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--CCCCcc
Confidence            677766  333 3333321 2334688999999887665 56899999998653            122222  222346


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         201 FVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       201 ~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .++|+|+|...++.-.|++|.+||.
T Consensus       335 h~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             eEEECCCCeEEEEEecCCcEEEEEh
Confidence            7899999943344556999999995

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.13  E-value=5.6e-07  Score=65.82  Aligned_cols=210  Identities=17%  Similarity=0.191  Sum_probs=134.3

Q ss_pred             CCccceeEEe---ecccccceEEEEECCCCCEE-EEEeCCCcEEEeecCCCcEEEEEe-cccccEEEEEECCCCCEEEEe
Q psy4391          13 PKPNYVLKFT---LAGHTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSG   87 (231)
Q Consensus        13 ~~~~~~~~~~---~~~h~~~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~   87 (231)
                      +-|.|.+...   +.+-...+..++|+|++..| ++...++.|...|.. ++..+.+. ........+++.+++.++++.
T Consensus         9 ~l~~y~~~~~~~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~   87 (255)
T 3qqz_A            9 SFQNYHATIDGKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISD   87 (255)
T ss_dssp             CCTTCEEEEEEEECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEE
T ss_pred             CccceEEEEeceECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEE
Confidence            3444555544   55666789999999987755 457778889988987 77666653 223567888999988877776


Q ss_pred             cCCCcEEEEeCCCcee---eeeec------CCCcceEEEEECCCCCEEEEeecCCcEEEEECCC---Cceeeec------
Q psy4391          88 SDDKTLKIWELSSGKC---LKTLK------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT---GKCLKTL------  149 (231)
Q Consensus        88 ~~~g~i~~~d~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~------  149 (231)
                      -.++.+.++++.....   .....      ..+.....++++|.++.|+++.+.....+|..+.   ...+...      
T Consensus        88 E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~  167 (255)
T 3qqz_A           88 ERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQ  167 (255)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHH
T ss_pred             CCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhc
Confidence            6778888888764331   12221      1233457899999997777777655555555431   1111111      


Q ss_pred             -cCCCCCeEEEEEcCCCC-eEEEEecCCeEEEEeCCCCceeeeeecCC--------CCCeEEEEECCCCCEEEEEeCCCe
Q psy4391         150 -PAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDD--------NPPVSFVKFSPNGKYILAATLDNT  219 (231)
Q Consensus       150 -~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~--------~~~i~~~~~s~~g~~l~~~s~d~~  219 (231)
                       ......+.+++++|... +++.......+..+|... +.+..+....        -+.-..|+|+++|+ |+..+.-+.
T Consensus       168 ~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~  245 (255)
T 3qqz_A          168 RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNR  245 (255)
T ss_dssp             HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTE
T ss_pred             cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCce
Confidence             11223568899998654 555566667888899764 4444433221        13557899999997 555577776


Q ss_pred             EEEEeC
Q psy4391         220 LKLWDS  225 (231)
Q Consensus       220 v~vwd~  225 (231)
                      +.+|..
T Consensus       246 ~y~f~~  251 (255)
T 3qqz_A          246 FYRFTP  251 (255)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            666643

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.10  E-value=1.6e-08  Score=84.68  Aligned_cols=182  Identities=15%  Similarity=0.191  Sum_probs=121.6

Q ss_pred             EEEECCCCCEEEEEeCCCc-------------------EEEeecCCCcEEEEEecc--c-------ccEEEEEECCCCC-
Q psy4391          32 SVKFSPNGEWLASSSADKL-------------------IKIWGAYDGKFEKTISGH--K-------LGISDVAWSSDSR-   82 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg~-------------------i~i~~~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~-   82 (231)
                      .++++|++.+++.+..++.                   |.-+|..+++....+...  .       ....-.....+|+ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5788898888888877763                   899999999887766532  1       1111112222454 


Q ss_pred             --EEEEecCCCcEEEEeCCCceeeeeecCCC-c--------------------------------------ceEEEEECC
Q psy4391          83 --LLVSGSDDKTLKIWELSSGKCLKTLKGHS-N--------------------------------------YVFCCNFNP  121 (231)
Q Consensus        83 --~l~~~~~~g~i~~~d~~~~~~~~~~~~~~-~--------------------------------------~v~~~~~~~  121 (231)
                        .++.++.+|.++++|.++++.+...+... .                                      ....++++|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence              68889999999999999998763321100 0                                      001256788


Q ss_pred             CCCEEEEeec---------------------------------------------CCcEEEEECCCCceeeeccCCCCCe
Q psy4391         122 QSNLIVSGSF---------------------------------------------DESVRIWDVRTGKCLKTLPAHSDPV  156 (231)
Q Consensus       122 ~~~~l~~~~~---------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~~v  156 (231)
                      +..++++...                                             +|.|+.||+.+++.+.....+. +.
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~  477 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IF  477 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SC
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-Cc
Confidence            8777776532                                             3679999999999887765443 22


Q ss_pred             EEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC-EEEEE
Q psy4391         157 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAA  214 (231)
Q Consensus       157 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~  214 (231)
                      ..-.+...+.+++.++.||.++.||.++++.+-++.........-+.|..+|+ |+++.
T Consensus       478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             cCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence            22244556778889999999999999999988776544332222355677887 44443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.08  E-value=1.5e-07  Score=71.50  Aligned_cols=193  Identities=11%  Similarity=0.097  Sum_probs=121.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec--------------------ccccEEEEEECC-CCCEEEE
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG--------------------HKLGISDVAWSS-DSRLLVS   86 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~--------------------~~~~v~~~~~~~-~~~~l~~   86 (231)
                      ....+++|+++|++++++..++.|..|+..++... .+..                    ....+..+++.+ +++ |+.
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            34567889999997788888899999987655433 2210                    112477899997 565 444


Q ss_pred             ecCCCcEEEEeCCCceeeeeec---C-CCcceEEEEECC-CCCEEEEeec-----------------CCcEEEEECCCCc
Q psy4391          87 GSDDKTLKIWELSSGKCLKTLK---G-HSNYVFCCNFNP-QSNLIVSGSF-----------------DESVRIWDVRTGK  144 (231)
Q Consensus        87 ~~~~g~i~~~d~~~~~~~~~~~---~-~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~v~d~~~~~  144 (231)
                      +...+.+..+|..+++......   . .......+.+++ +|++.++-..                 ++.|..+|..+++
T Consensus        97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            5444558888877654221111   1 112467789999 8987776432                 3678889987665


Q ss_pred             eeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCeEEEEeCCCCc--eeeeeecCCCCCeEEEEECCCCCEEEEEeC-----
Q psy4391         145 CLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAATL-----  216 (231)
Q Consensus       145 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~-----  216 (231)
                      ...... .......++++|+++.|+.+ ...+.|.+|++....  ....+.... . ...++++++|.+.++...     
T Consensus       177 ~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~-g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          177 TTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP-N-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS-S-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC-C-CCCeEECCCCCEEEEecCccccc
Confidence            322211 11234568999999866555 556899999987531  112222111 2 567899999986666544     


Q ss_pred             -----CCeEEEEeC
Q psy4391         217 -----DNTLKLWDS  225 (231)
Q Consensus       217 -----d~~v~vwd~  225 (231)
                           .+.|..+|.
T Consensus       254 ~~~~~~~~v~~~d~  267 (322)
T 2fp8_A          254 MHGRVDPKGIKFDE  267 (322)
T ss_dssp             TTSCEEEEEEEECT
T ss_pred             ccCCCccEEEEECC
Confidence                 356777774

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.06  E-value=3.8e-11  Score=93.31  Aligned_cols=173  Identities=17%  Similarity=0.165  Sum_probs=88.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEeccccc-EE-EEEECCCCCEEEEecCCCcEEEEeCCCceeeee
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-IS-DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-v~-~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      .+.+..+..++..+++++.||.++.||..+++....+..+... +. ..... ++..+++++.++.++.||.++++....
T Consensus        39 ~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~  117 (369)
T 2hz6_A           39 PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT  117 (369)
T ss_dssp             CSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------
T ss_pred             CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence            3444445566777777789999999999887765554322111 10 01111 345677888899999999999987766


Q ss_pred             ecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCC---CeEEEEecCCeEEEEeCC
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG---SLIVSSSYDGLCRIWDTA  183 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~v~d~~  183 (231)
                      +..+.    ....+|++..+++++.++.|+.||.++|+.+..+....  .....+.++.   ..+++++.+|.+..||..
T Consensus       118 ~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~  191 (369)
T 2hz6_A          118 LSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSE  191 (369)
T ss_dssp             -------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTT
T ss_pred             ecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECC
Confidence            65432    12455688899999999999999999998766554221  1122333332   567778899999999999


Q ss_pred             CCceeeeeecCCCCCeEEEEECCCCC
Q psy4391         184 SGQCLKTLIDDDNPPVSFVKFSPNGK  209 (231)
Q Consensus       184 ~~~~~~~~~~~~~~~i~~~~~s~~g~  209 (231)
                      +++.+-+.. ...+.+....++++|.
T Consensus       192 tG~~~W~~~-~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          192 SGDVLWIQN-YASPVVAFYVWQREGL  216 (369)
T ss_dssp             TCCEEEEEE-CSSCEEEEEECTTSSC
T ss_pred             CCcEEEEec-CCCceEEEEEecCCce
Confidence            998654433 1222233345566664

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.06  E-value=3.4e-08  Score=74.98  Aligned_cols=186  Identities=13%  Similarity=0.044  Sum_probs=121.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~  107 (231)
                      ..+.++...+++. +..++.++.+..++.. ++...........+..+...+++..++. +  +.+..+| .+++.....
T Consensus       137 ~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~  210 (330)
T 3hxj_A          137 AIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNF  210 (330)
T ss_dssp             CCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEE
T ss_pred             ceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEE
Confidence            3455666666776 4556778999999987 6665555544444556677777775544 4  7889999 666655555


Q ss_pred             cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce
Q psy4391         108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (231)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (231)
                      ......+.++...+++.+ ..++.++.+..+|. ++..+..+......+..+.+.+++ .+..++.+|.+..+|. +++.
T Consensus       211 ~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          211 YAGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTE  286 (330)
T ss_dssp             CCSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCE
T ss_pred             ccCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcE
Confidence            444445666677777654 44666778888874 455555554443334445565555 4667778888999996 5665


Q ss_pred             eeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       188 ~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ...... ....+.++..+++|+ |.+++.+|.+++...
T Consensus       287 ~~~~~~-~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~  322 (330)
T 3hxj_A          287 KWNFET-GSWIIATPVIDENGT-IYFGTRNGKFYALFN  322 (330)
T ss_dssp             EEEEEC-SSCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred             EEEEEc-CCccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence            444432 233455667778876 566888999998875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.02  E-value=2.3e-08  Score=83.64  Aligned_cols=178  Identities=12%  Similarity=0.176  Sum_probs=121.6

Q ss_pred             CCcEEEeecCCCcEEEEEeccccc--------------------------------EEEEEECCCCCEEEEecCCC----
Q psy4391          48 DKLIKIWGAYDGKFEKTISGHKLG--------------------------------ISDVAWSSDSRLLVSGSDDK----   91 (231)
Q Consensus        48 dg~i~i~~~~~~~~~~~~~~~~~~--------------------------------v~~~~~~~~~~~l~~~~~~g----   91 (231)
                      +|.|+.+|..+++....+......                                ...++++|++..++.+..++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            689999999999887766431110                                12467888888888777654    


Q ss_pred             ---------------cEEEEeCCCceeeeeecC--CC-------cceEEEEECCCC---CEEEEeecCCcEEEEECCCCc
Q psy4391          92 ---------------TLKIWELSSGKCLKTLKG--HS-------NYVFCCNFNPQS---NLIVSGSFDESVRIWDVRTGK  144 (231)
Q Consensus        92 ---------------~i~~~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~~l~~~~~d~~i~v~d~~~~~  144 (231)
                                     .|..+|.++++..-.++.  +.       ..........+|   ..++.++.+|.++++|.++|+
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           499999999987765542  11       112222333466   678999999999999999998


Q ss_pred             eeeeccCCC-----------CCe------------------------EEEEEcCCCCeEEEEec----------------
Q psy4391         145 CLKTLPAHS-----------DPV------------------------SAVHFNRDGSLIVSSSY----------------  173 (231)
Q Consensus       145 ~~~~~~~~~-----------~~v------------------------~~~~~~~~~~~l~~~~~----------------  173 (231)
                      .+.......           .++                        ..++++|+..++++...                
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~  428 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence            876543211           011                        14688898888877543                


Q ss_pred             ---------------------------CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         174 ---------------------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       174 ---------------------------dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                                                 .|.|..||+.+++.+-+.....  +.....+..++..++.++.||.+++||..
T Consensus       429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~g~~~~~g~~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS--PWNGGTLTTAGNVVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC--CCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence                                       1789999999998765554322  22233455677888889999999999974


Q ss_pred             C
Q psy4391         227 P  227 (231)
Q Consensus       227 ~  227 (231)
                      .
T Consensus       507 t  507 (677)
T 1kb0_A          507 T  507 (677)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.02  E-value=1.5e-06  Score=65.54  Aligned_cols=192  Identities=12%  Similarity=0.107  Sum_probs=116.5

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCC--cEEEEeCCCceeee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK--TLKIWELSSGKCLK  105 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g--~i~~~d~~~~~~~~  105 (231)
                      .....++|+++|+++++-..++.|..|+... .....+. .......+++.++++.+++.....  .|..++..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            4577899999999777766788999998754 3333332 234578899999998665553322  46667777766433


Q ss_pred             eecC-CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce-eee--------c-cCCCCCeEEEEEcCCCCeEEEE-ec
Q psy4391         106 TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-LKT--------L-PAHSDPVSAVHFNRDGSLIVSS-SY  173 (231)
Q Consensus       106 ~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~--------~-~~~~~~v~~~~~~~~~~~l~~~-~~  173 (231)
                      .... .......++..+++..+++-..++.|+++|...++. +..        . ...-.....+  +|+++.|+.+ ..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            2221 112233444455555555555688999999875421 110        0 0111233445  7888766554 45


Q ss_pred             CCeEEEEeCCC-Cce--eeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         174 DGLCRIWDTAS-GQC--LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       174 dg~i~v~d~~~-~~~--~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .+.|..+++.. ++.  ...+...  .....++++++|+++++....++|.++|.
T Consensus       188 ~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          188 KMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             CCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence            67999999864 321  1111111  12245789999987776666789999985

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.02  E-value=7.3e-08  Score=81.62  Aligned_cols=191  Identities=15%  Similarity=0.171  Sum_probs=109.3

Q ss_pred             ceEEEEEC-CCCCEEEEEe-CCC----cEEEeecCCC-cEEE-EEecccccEEEEEECCCCCEEEEecCC-----CcEEE
Q psy4391          29 AVSSVKFS-PNGEWLASSS-ADK----LIKIWGAYDG-KFEK-TISGHKLGISDVAWSSDSRLLVSGSDD-----KTLKI   95 (231)
Q Consensus        29 ~i~~~~~~-~~~~~l~~~~-~dg----~i~i~~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~-----g~i~~   95 (231)
                      .+....|| |||++||.+. .+|    .|+++++.++ +... .+.   .....++|+||++.|+....+     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 9999887543 333    4999999877 5211 111   113457899999888776654     25788


Q ss_pred             EeCCCcee--eeeec-CCCcceEEEEECCCCCEEEEeec---CCcEEEEECCCCc-ee--eec-cCCCCCeEEEEEcCCC
Q psy4391          96 WELSSGKC--LKTLK-GHSNYVFCCNFNPQSNLIVSGSF---DESVRIWDVRTGK-CL--KTL-PAHSDPVSAVHFNRDG  165 (231)
Q Consensus        96 ~d~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~-~~--~~~-~~~~~~v~~~~~~~~~  165 (231)
                      +++.+++.  ...+. ........+.|+|+|++|+....   ...|+++|+.++. ..  ..+ ....+....+.|+..+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS  331 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence            88876532  22222 22234567889999998887653   3458889998752 12  333 2233455555554434


Q ss_pred             CeEEEEecC----CeEEEEeCCCCceeee-eecCC-CCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         166 SLIVSSSYD----GLCRIWDTASGQCLKT-LIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       166 ~~l~~~~~d----g~i~v~d~~~~~~~~~-~~~~~-~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      .+++....+    ..|..+|+.+...... +.... ...+..+.+. .+.++++...++..++|
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence            444444443    3677778765322222 22222 2233444444 23344555567754443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.99  E-value=2.8e-08  Score=80.49  Aligned_cols=186  Identities=11%  Similarity=0.126  Sum_probs=123.2

Q ss_pred             cceEEEEE-C-CCCCEEEEEe------------------CCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEe
Q psy4391          28 KAVSSVKF-S-PNGEWLASSS------------------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG   87 (231)
Q Consensus        28 ~~i~~~~~-~-~~~~~l~~~~------------------~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   87 (231)
                      .....+++ + |+++++++++                  .++.+.+.|..+.+...++.-.. ....++.+|+|++++++
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt  212 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFST  212 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEE
Confidence            45678887 5 8999988874                  24578899998887777765322 34567889999998877


Q ss_pred             cCCC--------------------------------------cEEEEeCCC--cee-eeeecCCCcceEEEEECCCCCEE
Q psy4391          88 SDDK--------------------------------------TLKIWELSS--GKC-LKTLKGHSNYVFCCNFNPQSNLI  126 (231)
Q Consensus        88 ~~~g--------------------------------------~i~~~d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l  126 (231)
                      +.+.                                      .|.+.|..+  ++. +..+... ....++.++|||+++
T Consensus       213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v  291 (595)
T 1fwx_A          213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHL  291 (595)
T ss_dssp             ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEE
T ss_pred             ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEE
Confidence            6443                                      356666665  333 3333321 234468899999987


Q ss_pred             EEee-cCCcEEEEECCCCc------------eeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCC---------
Q psy4391         127 VSGS-FDESVRIWDVRTGK------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---------  184 (231)
Q Consensus       127 ~~~~-~d~~i~v~d~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~---------  184 (231)
                      +..+ .+.+|.++|+.+.+            ....... ......++|+|+|..+.+...|++|.+||+..         
T Consensus       292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~  370 (595)
T 1fwx_A          292 CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEK  370 (595)
T ss_dssp             EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCS
T ss_pred             EEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccc
Confidence            7665 67889999998653            2333333 34578899999994444566789999999876         


Q ss_pred             -CceeeeeecCCCCC-eE---EEEECCCCCEEEEEeC
Q psy4391         185 -GQCLKTLIDDDNPP-VS---FVKFSPNGKYILAATL  216 (231)
Q Consensus       185 -~~~~~~~~~~~~~~-i~---~~~~s~~g~~l~~~s~  216 (231)
                       .+.+.++..+..+. ..   .+.++|||++|++...
T Consensus       371 ~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          371 VDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             CCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             cceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence             33444443332210 11   1245899999998764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.97  E-value=9.5e-08  Score=80.12  Aligned_cols=178  Identities=12%  Similarity=0.138  Sum_probs=118.5

Q ss_pred             CCcEEEeecCCCcEEEEEeccc------------------------------cc-EEEEEECCCCCEEEEecCCCc----
Q psy4391          48 DKLIKIWGAYDGKFEKTISGHK------------------------------LG-ISDVAWSSDSRLLVSGSDDKT----   92 (231)
Q Consensus        48 dg~i~i~~~~~~~~~~~~~~~~------------------------------~~-v~~~~~~~~~~~l~~~~~~g~----   92 (231)
                      +|.|+.||..+++....+....                              .. -..++++|++..++.+..++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            6889999999998876654210                              00 114678888888888877753    


Q ss_pred             ---------------EEEEeCCCceeeeeecC--CC-------cceEEEEECCCCC---EEEEeecCCcEEEEECCCCce
Q psy4391          93 ---------------LKIWELSSGKCLKTLKG--HS-------NYVFCCNFNPQSN---LIVSGSFDESVRIWDVRTGKC  145 (231)
Q Consensus        93 ---------------i~~~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~  145 (231)
                                     |..+|.++++.+-.++.  +.       ..........+|+   .++.++.+|.++++|.++|+.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           99999999987766543  11       1121222223454   788899999999999999987


Q ss_pred             eeeccCCC----------------------------C-----------CeEEEEEcCCCCeEEEEec-------------
Q psy4391         146 LKTLPAHS----------------------------D-----------PVSAVHFNRDGSLIVSSSY-------------  173 (231)
Q Consensus       146 ~~~~~~~~----------------------------~-----------~v~~~~~~~~~~~l~~~~~-------------  173 (231)
                      +.......                            .           .-..++++|+..++++...             
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence            63321110                            0           0112678888777776532             


Q ss_pred             --------------------------------CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEE
Q psy4391         174 --------------------------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK  221 (231)
Q Consensus       174 --------------------------------dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~  221 (231)
                                                      +|.|..||+.+++.+-+.....  +...-.+...|.+++.++.||.++
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~gt~dg~l~  499 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT--IFNGGTLSTAGNLVFEGSADGRVI  499 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC--CccCccceECCCEEEEECCCCcEE
Confidence                                            3779999999998765554332  122223455677899999999999


Q ss_pred             EEeCCC
Q psy4391         222 LWDSYP  227 (231)
Q Consensus       222 vwd~~~  227 (231)
                      .||...
T Consensus       500 a~D~~t  505 (689)
T 1yiq_A          500 AYAADT  505 (689)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            999754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.97  E-value=9e-08  Score=72.64  Aligned_cols=176  Identities=16%  Similarity=0.088  Sum_probs=116.0

Q ss_pred             CCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEE
Q psy4391          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCN  118 (231)
Q Consensus        39 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~  118 (231)
                      +..+..++.++.+..++.. ++...........+..+...+++. +..++.++.+..+|.. ++...........+.++.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            4556677788999999987 665555444333445556666666 5567778899999998 665555544444455566


Q ss_pred             ECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCC
Q psy4391         119 FNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP  198 (231)
Q Consensus       119 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~  198 (231)
                      ..+++.+.+..   +.+..+| .+++...........+.++...+++. +..++.++.+..+|. +++.+...... ...
T Consensus       184 ~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~-~~~  256 (330)
T 3hxj_A          184 IGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG-KRI  256 (330)
T ss_dssp             ECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS-SCC
T ss_pred             EcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC-CCc
Confidence            77777766544   7899999 67776666655556677788888775 555666788888875 44444433322 222


Q ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         199 VSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       199 i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +..+.+.++| .|.+++.+|.|..+|.
T Consensus       257 ~~~~~~~~~g-~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          257 ESSPVIGNTD-TIYFGSYDGHLYAINP  282 (330)
T ss_dssp             CSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred             cccceEcCCC-eEEEecCCCCEEEECC
Confidence            2334556666 4667777888888885

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.95  E-value=1e-06  Score=66.90  Aligned_cols=192  Identities=12%  Similarity=0.092  Sum_probs=117.4

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCcEEEeecCCCcEEEEEec-----ccccEEEEEECC-CCCEEEEecC------------
Q psy4391          29 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISG-----HKLGISDVAWSS-DSRLLVSGSD------------   89 (231)
Q Consensus        29 ~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~------------   89 (231)
                      ....+++.+ +|++ +.+...+.+..++..++.. ..+..     ......++++.+ +|+.+++...            
T Consensus        81 ~p~gi~~~~~~g~l-~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           81 RTYDISYNLQNNQL-YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CEEEEEEETTTTEE-EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCceEEEcCCCCcE-EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence            467899997 5554 4444455578887654432 22221     112467899999 8987665432            


Q ss_pred             -----CCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEe-ecCCcEEEEECCCCc--eeeeccCCCCCeEEEEE
Q psy4391          90 -----DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGK--CLKTLPAHSDPVSAVHF  161 (231)
Q Consensus        90 -----~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~--~~~~~~~~~~~v~~~~~  161 (231)
                           ++.|..+|..+++....... ......++++|+++.++.+ ...+.|.+|++....  ....+....+ ...+++
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~  236 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR  236 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE
T ss_pred             cccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE
Confidence                 36788888876654322221 1223468899999866555 556889999987531  1111111223 778999


Q ss_pred             cCCCCeEEEEec----------CCeEEEEeCCCCceeeeeecCCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         162 NRDGSLIVSSSY----------DGLCRIWDTASGQCLKTLIDDDN---PPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       162 ~~~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~~~---~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +++|.++++...          .+.|..+|.. ++.+..+.....   ..+..+++ .+|+++++...++.|.+++..
T Consensus       237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             CTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             CCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence            999987666544          4678888874 665555543321   23455555 456655555567899999864

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.93  E-value=4.3e-07  Score=70.43  Aligned_cols=179  Identities=13%  Similarity=0.016  Sum_probs=115.0

Q ss_pred             CCEEEEEeCCCcEEEeecCCCcEEEEEecccc-c---EE---EEEECC--CCCEEEEecCCCcEEEEeCCCceeeeeecC
Q psy4391          39 GEWLASSSADKLIKIWGAYDGKFEKTISGHKL-G---IS---DVAWSS--DSRLLVSGSDDKTLKIWELSSGKCLKTLKG  109 (231)
Q Consensus        39 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~-~---v~---~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~  109 (231)
                      +..++.+..++.+..+|..+++.......... .   +.   .+.-.|  .+..++.++.++.+..+|.++++.......
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~  267 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL  267 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC
Confidence            34567777889999999988887665542210 0   00   011111  245677788899999999999887655442


Q ss_pred             CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC-CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCcee
Q psy4391         110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL  188 (231)
Q Consensus       110 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~  188 (231)
                      .  ....+..  ++..++.++.++.+..+|..+++........ .........  .+..++.++.+|.+..+|..+++.+
T Consensus       268 ~--~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          268 G--SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             C--CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             C--CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence            2  2333333  3667888888999999999999877665421 122222222  2567888889999999999999876


Q ss_pred             eeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       189 ~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ................  .+..|++++.+|.|..||.
T Consensus       342 ~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~~  376 (376)
T 3q7m_A          342 AQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSITR  376 (376)
T ss_dssp             EEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEEC
T ss_pred             EEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEeC
Confidence            6554322211111122  2457888899999999873

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.90  E-value=8.6e-07  Score=65.22  Aligned_cols=150  Identities=13%  Similarity=0.098  Sum_probs=103.5

Q ss_pred             EEEEEECCCCCEEEEecC--CCcEEEEeCCCceeeeeecCCCc-ceEEEEECCCCCEEEEe-ecCCcEEEEECCCCceee
Q psy4391          72 ISDVAWSSDSRLLVSGSD--DKTLKIWELSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLK  147 (231)
Q Consensus        72 v~~~~~~~~~~~l~~~~~--~g~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~  147 (231)
                      ...+.|++++..+++.+.  ++.|+++|+++++.+..+..... ....+.+.  +..++.. -.++.+.++|..+.+.+.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence            578999998754455443  57999999999998877653221 22234444  4445444 567899999999998888


Q ss_pred             eccCC-CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCC----CCeEEEEECCCCCEEEEEeCCCeEEE
Q psy4391         148 TLPAH-SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN----PPVSFVKFSPNGKYILAATLDNTLKL  222 (231)
Q Consensus       148 ~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~----~~i~~~~~s~~g~~l~~~s~d~~v~v  222 (231)
                      .+... ...   ..+++|++.++++..++.+.++|..+.+.+..+.....    ...+.+.|. +|+..+..-.++.|.+
T Consensus       101 ~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v  176 (266)
T 2iwa_A          101 NFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR  176 (266)
T ss_dssp             EEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence            87643 222   33566888887777788999999999888777654321    124667777 6755555545789999


Q ss_pred             EeCCC
Q psy4391         223 WDSYP  227 (231)
Q Consensus       223 wd~~~  227 (231)
                      .|...
T Consensus       177 ID~~t  181 (266)
T 2iwa_A          177 ISAKD  181 (266)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            99744

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.87  E-value=1e-06  Score=68.34  Aligned_cols=183  Identities=15%  Similarity=0.067  Sum_probs=110.3

Q ss_pred             CCCEEEEEeCCCcEEEeecCCCcEEEEEecc---------cccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy4391          38 NGEWLASSSADKLIKIWGAYDGKFEKTISGH---------KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK  108 (231)
Q Consensus        38 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~  108 (231)
                      .+..+++++.++.|..+|..+++........         ...+.. ....++..+++++.++.|..+|.++++......
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            4667788888999999999888876555432         112222 112245677788889999999999988765554


Q ss_pred             CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCe-----EEEEEcCCCCeEEEEecCCeEEEEeCC
Q psy4391         109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPV-----SAVHFNRDGSLIVSSSYDGLCRIWDTA  183 (231)
Q Consensus       109 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (231)
                      ...........  .+..++.++.++.+..+|.++++.+..........     ......  +..++.++.++.+..+|..
T Consensus       131 ~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          131 VAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLME  206 (376)
T ss_dssp             CSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETT
T ss_pred             CCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECC
Confidence            32211111111  24577778889999999999998877655432111     111222  4567778889999999999


Q ss_pred             CCceeeeeecCCCCC---eEE---EEECC--CCCEEEEEeCCCeEEEEeC
Q psy4391         184 SGQCLKTLIDDDNPP---VSF---VKFSP--NGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       184 ~~~~~~~~~~~~~~~---i~~---~~~s~--~g~~l~~~s~d~~v~vwd~  225 (231)
                      +++.+-.........   +..   +...|  .+..+++++.++.+..+|.
T Consensus       207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~  256 (376)
T 3q7m_A          207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL  256 (376)
T ss_dssp             TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred             CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence            887654433211000   000   00011  1345666666777777765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.86  E-value=6.9e-06  Score=63.18  Aligned_cols=194  Identities=9%  Similarity=-0.029  Sum_probs=118.1

Q ss_pred             ceEEEEECCCCCEEEEE-eCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCceeeee
Q psy4391          29 AVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      ....++|++.+..|+.+ ...+.|..++.........+.........+++.+.+..| ++-...+.|.+.+++.......
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l  153 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL  153 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence            45788998766655544 456788888876554444443333345678888755555 5555677899999876543333


Q ss_pred             ecCCCcceEEEEECCCCCEEEEee-cC-CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCeEEEEeCC
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGS-FD-ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTA  183 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~v~d~~  183 (231)
                      +.........++++|.+..|+... .. +.|..+++............-.....++++|++..|+.+ ...+.|..+|+.
T Consensus       154 ~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d  233 (349)
T 3v64_C          154 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD  233 (349)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence            333345577899998666555444 44 778888887443222222233457889999876666554 456789999987


Q ss_pred             CCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       184 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      ... ...+..........+++. .+..+++-...+.|..+|
T Consensus       234 G~~-~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          234 GSH-RKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             SCS-CEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             CCc-eEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEE
Confidence            533 233332222334567773 344444444567787776

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.80  E-value=9.7e-06  Score=63.27  Aligned_cols=196  Identities=9%  Similarity=-0.030  Sum_probs=119.6

Q ss_pred             cceEEEEECCCCCEEEE-EeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCceeee
Q psy4391          28 KAVSSVKFSPNGEWLAS-SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      .....++|++.+..|+. -...+.|..++.........+.........+++.+.+..| ++-...+.|.+.+++......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            34678999876665554 4456788888876554444443333345678888755555 455556788888887544333


Q ss_pred             eecCCCcceEEEEECCCCCEEEEee-cC-CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCeEEEEeC
Q psy4391         106 TLKGHSNYVFCCNFNPQSNLIVSGS-FD-ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT  182 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~v~d~  182 (231)
                      .+.........++++|.+..|+... .. +.|..+++............-.....++++|++..|+.+ +..+.|..+|+
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            3333335577899998776665554 34 678888887543322222333457889999876666544 45678999998


Q ss_pred             CCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       183 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .... ...+..........+++. .+..+++-...+.|..+|.
T Consensus       276 dG~~-~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~  316 (386)
T 3v65_B          276 DGSH-RKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANK  316 (386)
T ss_dssp             TSCS-CEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             CCCe-eEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEEC
Confidence            6533 233333222334567773 3444444445678888873

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.76  E-value=8e-07  Score=64.90  Aligned_cols=149  Identities=9%  Similarity=-0.015  Sum_probs=101.2

Q ss_pred             EEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcc-eEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc
Q psy4391          72 ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP  150 (231)
Q Consensus        72 v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  150 (231)
                      ...+.|+ ++..+.+.+.+|.|+.+|+++++.+..+ -.... -..+.... +++......++.+.+||.++.+.+..+.
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            4678887 3566678888889999999999877766 22221 12244432 2444444568889999999999888877


Q ss_pred             CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCC----CCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         151 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN----PPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       151 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~----~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ..... ..++  ++++.|+.+..++.|.++|..+.+.+..+.....    ..++.+.|. +|+..+..-.++.|.+.|+.
T Consensus       134 ~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~  209 (268)
T 3nok_A          134 YSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA  209 (268)
T ss_dssp             CSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred             CCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence            54322 2333  5678887777788999999999988777654321    134566776 67655444457789888864


Q ss_pred             C
Q psy4391         227 P  227 (231)
Q Consensus       227 ~  227 (231)
                      .
T Consensus       210 T  210 (268)
T 3nok_A          210 T  210 (268)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.76  E-value=9.8e-07  Score=64.38  Aligned_cols=149  Identities=13%  Similarity=0.186  Sum_probs=100.7

Q ss_pred             EEEEEECCCCCEEEEecCCC--cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEee-cCCcEEEEECCCCceeee
Q psy4391          72 ISDVAWSSDSRLLVSGSDDK--TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKCLKT  148 (231)
Q Consensus        72 v~~~~~~~~~~~l~~~~~~g--~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~  148 (231)
                      ...+.|+ ++..+.+.+.+|  .|+.+|+++++.+..+..... .......+++..+.... .++.+.+||.++.+.+..
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~-~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR-YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc-cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4678888 666666777666  899999999998877764332 22222233344555544 578899999999998888


Q ss_pred             ccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCC-C---CCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         149 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-N---PPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       149 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~---~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      +......   ..++++++.|+....++.|.++|..+.+.+..+.... .   ..++.+.|. +|+..+..-.++.|.+.|
T Consensus       123 i~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID  198 (262)
T 3nol_A          123 FNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID  198 (262)
T ss_dssp             EECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred             EECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence            7754322   2334577777776667889999999998877765432 1   234556776 676554444577888888


Q ss_pred             CC
Q psy4391         225 SY  226 (231)
Q Consensus       225 ~~  226 (231)
                      +.
T Consensus       199 p~  200 (262)
T 3nol_A          199 PE  200 (262)
T ss_dssp             TT
T ss_pred             CC
Confidence            63

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.74  E-value=1.1e-06  Score=73.57  Aligned_cols=183  Identities=16%  Similarity=0.238  Sum_probs=116.1

Q ss_pred             EEEECCCCCEEEEEeCCC-------------------cEEEeecCCCcEEEEEecc--c-------ccEEEEEECCCCC-
Q psy4391          32 SVKFSPNGEWLASSSADK-------------------LIKIWGAYDGKFEKTISGH--K-------LGISDVAWSSDSR-   82 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg-------------------~i~i~~~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~-   82 (231)
                      .+++.+++.+++.+..++                   .|.-+|..+++....+...  .       .+..-..+..+|+ 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            468888888888877665                   3888999999887766532  1       1222122223564 


Q ss_pred             --EEEEecCCCcEEEEeCCCceeeeeecCCC------------cce------------------------EEEEECCCCC
Q psy4391          83 --LLVSGSDDKTLKIWELSSGKCLKTLKGHS------------NYV------------------------FCCNFNPQSN  124 (231)
Q Consensus        83 --~l~~~~~~g~i~~~d~~~~~~~~~~~~~~------------~~v------------------------~~~~~~~~~~  124 (231)
                        .++.++.+|.++++|.++++.+...+...            ..+                        ..++++|+..
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g  393 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG  393 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred             EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence              68889999999999999988763322110            000                        0145667666


Q ss_pred             EEEEee------------------------------------cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeE
Q psy4391         125 LIVSGS------------------------------------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus       125 ~l~~~~------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  168 (231)
                      +++...                                    .++.|..||+.+++.+.+..... +.....+...+.++
T Consensus       394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v  472 (668)
T 1kv9_A          394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLV  472 (668)
T ss_dssp             EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEE
T ss_pred             EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEE
Confidence            655421                                    23779999999999877765432 22222334457788


Q ss_pred             EEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC-EEEEEe
Q psy4391         169 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAAT  215 (231)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s  215 (231)
                      +.++.||.++.||.++++.+..+.........-+.+..+|+ |++.++
T Consensus       473 f~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          473 FQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            88999999999999999988776544321111233445666 555554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.73  E-value=4.6e-06  Score=66.03  Aligned_cols=152  Identities=11%  Similarity=0.098  Sum_probs=95.4

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC-CC----cEEEEeCCCce
Q psy4391          29 AVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-DK----TLKIWELSSGK  102 (231)
Q Consensus        29 ~i~~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g----~i~~~d~~~~~  102 (231)
                      ....++++| ++..|+.+...+.|+.++...+.... +.........++|+++++.|+.+.. ++    .+.+++.. +.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence            456889998 45666665555888888886655443 3334456788999999996665543 22    23334432 22


Q ss_pred             ee--eeecCCCcceEEEEECC-CCCEEEEeecCCcEEEEECCCCceeeeccC-CCCCeEEEEEcCCCCeEE-EEecCCeE
Q psy4391         103 CL--KTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPA-HSDPVSAVHFNRDGSLIV-SSSYDGLC  177 (231)
Q Consensus       103 ~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~dg~i  177 (231)
                      ..  ..+.. ......++++| ++.++++-..++.|..++...+........ .......++|+|++++|+ +-...+.|
T Consensus       216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            11  12221 12244678899 677777666788999999986654222221 123467899999999554 44566789


Q ss_pred             EEEeCC
Q psy4391         178 RIWDTA  183 (231)
Q Consensus       178 ~v~d~~  183 (231)
                      ..++..
T Consensus       295 ~~~~~d  300 (430)
T 3tc9_A          295 LRSDYD  300 (430)
T ss_dssp             EEEEEE
T ss_pred             EEEeCC
Confidence            888764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.73  E-value=3.1e-05  Score=58.71  Aligned_cols=196  Identities=9%  Similarity=0.016  Sum_probs=118.0

Q ss_pred             cceEEEEECCCCCEEEEE-eCCCcEEEeecCC----CcEEEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCc
Q psy4391          28 KAVSSVKFSPNGEWLASS-SADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSG  101 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~  101 (231)
                      ....+++|++.+..|+.+ ..++.|..++...    ......+.........+++++.+..| ++-...+.|.+++++..
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            456799999876655544 4567888888764    22222232222345778888755555 45566789999998764


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeecC--CcEEEEECCCCceeeec-cCCCCCeEEEEEcCCCCeEEEE-ecCCeE
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD--ESVRIWDVRTGKCLKTL-PAHSDPVSAVHFNRDGSLIVSS-SYDGLC  177 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i  177 (231)
                      .....+.........++++|.+..|+.....  +.|..+++.... ...+ ...-.....++++|++..|+.+ +..+.|
T Consensus       110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I  188 (316)
T 1ijq_A          110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (316)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence            4333333333567789999876666555442  688888886432 2322 2223467889999877766554 456799


Q ss_pred             EEEeCCCCceeeeeecC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         178 RIWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~--~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ..+|+.... .+.+...  .......+++.. +..+++-...++|..+|..
T Consensus       189 ~~~d~dg~~-~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          189 SSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             EEEETTSCS-CEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred             EEEecCCCc-eEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEEeCC
Confidence            999987433 3333321  112234567643 4444445456788888753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.72  E-value=1.6e-07  Score=72.66  Aligned_cols=162  Identities=10%  Similarity=-0.067  Sum_probs=108.8

Q ss_pred             cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec----------CCCcEEEEeCCCceeeeeecCC-------Cc
Q psy4391          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWELSSGKCLKTLKGH-------SN  112 (231)
Q Consensus        50 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~g~i~~~d~~~~~~~~~~~~~-------~~  112 (231)
                      .|.++|..+++....+.....+  .+.++||+++++++.          .++.|.+||+.+++.+..+...       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999988888755555  799999999988875          3678999999999988887532       12


Q ss_pred             ceEEEEECCCCCEEEEeec--CCcEEE--EECCCCceeeeccCCCCCeEEEEEcCCCC-eEEEEecCCeEEEEeCCC---
Q psy4391         113 YVFCCNFNPQSNLIVSGSF--DESVRI--WDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTAS---  184 (231)
Q Consensus       113 ~v~~~~~~~~~~~l~~~~~--d~~i~v--~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~v~d~~~---  184 (231)
                      ....+.++|||++++.+..  +..+.+  +|+.+   +..+.... .   ..+.|+++ .+++.+.||.+.+.|+.+   
T Consensus       125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~  197 (368)
T 1mda_H          125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPA  197 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred             CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence            2346789999999998875  456888  99876   34443211 1   12234443 344566788888888876   


Q ss_pred             --Cceeee---eecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         185 --GQCLKT---LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       185 --~~~~~~---~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                        ++....   .......+.   + ++++..++..+. +.|.+.|.
T Consensus       198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~  238 (368)
T 1mda_H          198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDI  238 (368)
T ss_dssp             CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEEC
T ss_pred             cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEEC
Confidence              432211   111122233   3 566666666666 88888875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.72  E-value=3.4e-05  Score=58.47  Aligned_cols=176  Identities=7%  Similarity=-0.027  Sum_probs=108.5

Q ss_pred             CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEeCCC----ceeeeeecCCCcceEEEEECCC
Q psy4391          48 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSS----GKCLKTLKGHSNYVFCCNFNPQ  122 (231)
Q Consensus        48 dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~~----~~~~~~~~~~~~~v~~~~~~~~  122 (231)
                      ...|+..+.........+.. ......++|++.++.|+ +-..++.|..+++.+    ......+.........+++++.
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~   87 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI   87 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence            45678888776655444433 34578899998766555 445568899999875    2222223222234567788865


Q ss_pred             C-CEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC--CeEEEEeCCCCceeeeeecCCCCCe
Q psy4391         123 S-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD--GLCRIWDTASGQCLKTLIDDDNPPV  199 (231)
Q Consensus       123 ~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~v~d~~~~~~~~~~~~~~~~~i  199 (231)
                      + ++.++-...+.|.++|+........+.........++++|.+..|+.+...  +.|..+++... ....+....-...
T Consensus        88 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P  166 (316)
T 1ijq_A           88 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWP  166 (316)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCE
T ss_pred             CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCc
Confidence            4 444555667889999987543322222233567899999976666555443  68888887643 2333332223345


Q ss_pred             EEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         200 SFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       200 ~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      ..+++++++..|+.+.. .++|..+|.
T Consensus       167 ~gla~d~~~~~lY~~D~~~~~I~~~d~  193 (316)
T 1ijq_A          167 NGITLDLLSGRLYWVDSKLHSISSIDV  193 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             eEEEEeccCCEEEEEECCCCeEEEEec
Confidence            78999998777766654 568988885

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.71  E-value=3.9e-05  Score=58.97  Aligned_cols=192  Identities=7%  Similarity=-0.069  Sum_probs=117.5

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEe-cCCCcEEEEeCCCceeeeeec
Q psy4391          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG-SDDKTLKIWELSSGKCLKTLK  108 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~g~i~~~d~~~~~~~~~~~  108 (231)
                      -+|.+..+++ +|+.+ ....|+..+.........+.. ......++|++..+.|+.+ ...+.|..+++........+.
T Consensus        36 ~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  112 (349)
T 3v64_C           36 RSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  112 (349)
T ss_dssp             SCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             CcccccccCc-eeEee-cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence            3455555643 44433 345677777765544443333 3457889999866666544 457789999988655433333


Q ss_pred             CCCcceEEEEECCCC-CEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecC-CeEEEEeCCCC
Q psy4391         109 GHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYD-GLCRIWDTASG  185 (231)
Q Consensus       109 ~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d-g~i~v~d~~~~  185 (231)
                      ........+++++.+ ++.++-...+.|.+.++........+...-.....++++|.+..|+.. ... +.|..+++...
T Consensus       113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~  192 (349)
T 3v64_C          113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  192 (349)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence            333344577888754 444555567889999987544322233333567899999966655544 344 78888887643


Q ss_pred             ceeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         186 QCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       186 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      . ...+.......-..++++|++..|+.+.. .++|..+|.
T Consensus       193 ~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          193 G-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             S-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             C-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            3 23332222333578999987777766654 568888875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.69  E-value=7e-06  Score=59.33  Aligned_cols=149  Identities=14%  Similarity=0.112  Sum_probs=98.3

Q ss_pred             EEEEEECCCCCEEEEecCC--CcEEEEeCCCceeeeeecCCCcce-EEEEECCCCCEEEEeecCCcEEEEECCCCceeee
Q psy4391          72 ISDVAWSSDSRLLVSGSDD--KTLKIWELSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT  148 (231)
Q Consensus        72 v~~~~~~~~~~~l~~~~~~--g~i~~~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  148 (231)
                      ...+.|++ +..+.+.+..  ..|+.+|+++++....+....... ..+... .+++......++.+.+||.++.+.+..
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~t  100 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRAR  100 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence            66788886 5555666665  489999999999887775433211 223332 233444445688899999999998888


Q ss_pred             ccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCC----CCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         149 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN----PPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       149 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~----~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      +.....+ ..++  +++..|+.+..++.|.++|..+.+.+.++.....    ..++.+.+. +|+..+..-.++.|.+.|
T Consensus       101 i~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vID  176 (243)
T 3mbr_X          101 FRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARID  176 (243)
T ss_dssp             EECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEEC
T ss_pred             EeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEE
Confidence            7754333 3343  5677777766788999999999888777654321    234556655 566544444567888887


Q ss_pred             CC
Q psy4391         225 SY  226 (231)
Q Consensus       225 ~~  226 (231)
                      +.
T Consensus       177 p~  178 (243)
T 3mbr_X          177 PA  178 (243)
T ss_dssp             TT
T ss_pred             CC
Confidence            63

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.67  E-value=3.8e-05  Score=57.79  Aligned_cols=186  Identities=12%  Similarity=0.061  Sum_probs=108.0

Q ss_pred             cceEEEEECCCCCEEEEEeCC-C-cEEEeecCCCcEEEEEecc-cccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee-
Q psy4391          28 KAVSSVKFSPNGEWLASSSAD-K-LIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC-  103 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~d-g-~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~-  103 (231)
                      .....+++.++|+++++.... + .|..++..+++........ ......++..+++..+++...++.|+.+|..+++. 
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            357789999999966654332 2 4666666666654332211 12234455555554455555688899999875421 


Q ss_pred             eeee---------cCCCcceEEEEECCCCCEEEEe-ecCCcEEEEECCC-Cce--eeeccCCCCCeEEEEEcCCCCeEEE
Q psy4391         104 LKTL---------KGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRT-GKC--LKTLPAHSDPVSAVHFNRDGSLIVS  170 (231)
Q Consensus       104 ~~~~---------~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~  170 (231)
                      +...         .........+  +++++.++.+ ...+.|..+|+.. ++.  ...+.. ......++++++|+++++
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va  228 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGA  228 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEE
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEE
Confidence            1100         0111223344  7777766555 4567899999874 321  111111 123456889999987777


Q ss_pred             EecCCeEEEEeCCCCceeeee-ecCCCCCeEEEEEC---CCCCEEEEEeCC
Q psy4391         171 SSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFS---PNGKYILAATLD  217 (231)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~-~~~~~~~i~~~~~s---~~g~~l~~~s~d  217 (231)
                      ....+.|.++|.. ++..... ..........++|.   |+++.|++++..
T Consensus       229 ~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          229 THIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             eCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            6667899999975 5432211 11122346789998   898888777653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.66  E-value=6.6e-05  Score=58.84  Aligned_cols=196  Identities=9%  Similarity=0.008  Sum_probs=118.7

Q ss_pred             cceEEEEECCCCCEEEEEe-CCCcEEEeecCCC----cEEEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCc
Q psy4391          28 KAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSG  101 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~  101 (231)
                      ..+..++|++.+..|+.+. ..+.|+.++....    .....+.........+++.+.+..| ++-...+.|.+.+++..
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~  191 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  191 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence            4677899998666665543 4577888877542    2233333334457788898754444 55556788999998865


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeec--CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCeEE
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCR  178 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~  178 (231)
                      .....+.........++++|.+..|+....  .+.|...++............-.....|++++++..|+.+ ...+.|.
T Consensus       192 ~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~  271 (400)
T 3p5b_L          192 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  271 (400)
T ss_dssp             SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEE
Confidence            544444434455788999997666665543  4689999987543322223333567889999877766655 4567899


Q ss_pred             EEeCCCCceeeeeecC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         179 IWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~--~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .+|+.... ...+...  .-.....+++.. +..+.+-...+.|..+|.
T Consensus       272 ~~d~dG~~-~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          272 SIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             EEETTSCC-CEEEEECSSTTSSEEEEEEET-TEEEEEESSSCSEEEEES
T ss_pred             EEeCCCCc-cEEEEeCCCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEc
Confidence            99986543 3333222  112234566532 233344445668887773

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.65  E-value=4.3e-05  Score=57.68  Aligned_cols=159  Identities=9%  Similarity=0.092  Sum_probs=107.1

Q ss_pred             ccccceEEEEECCCCCEEEEEe-CCCcEEEeecCCCcEEEEEecc-------cccEEEEEE---CCCCCEEEEec-----
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISGH-------KLGISDVAW---SSDSRLLVSGS-----   88 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~-------~~~v~~~~~---~~~~~~l~~~~-----   88 (231)
                      ....--.+++|.+....+..++ ..|.|..|+...+.........       ...+..+.|   .|+++++++..     
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            3344445789988666555555 7899999998755443332211       113578999   68877776543     


Q ss_pred             --------CCCcEEEEeCC---CceeeeeecC-------------CCcceEEEEECCCCCEEEEeecC-CcEEEEECCCC
Q psy4391          89 --------DDKTLKIWELS---SGKCLKTLKG-------------HSNYVFCCNFNPQSNLIVSGSFD-ESVRIWDVRTG  143 (231)
Q Consensus        89 --------~~g~i~~~d~~---~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d-~~i~v~d~~~~  143 (231)
                              .+..|..||+.   +++.+....-             .......+...++|+..++++.. +.|..++....
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~  169 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK  169 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence                    25678899998   6665543321             11246789999999999999888 88888887643


Q ss_pred             ceeeecc------CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCC
Q psy4391         144 KCLKTLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       144 ~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (231)
                      . +..+.      ........|+++|++..|++....|.+..+|+..
T Consensus       170 ~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          170 T-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             C-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             E-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            2 22211      1112356889999999888887799999999874

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.65  E-value=2.7e-05  Score=59.25  Aligned_cols=184  Identities=11%  Similarity=0.259  Sum_probs=115.4

Q ss_pred             CCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECC----CCCE--E-EEec-C--CCcEEEEeC--CCceeee
Q psy4391          38 NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS----DSRL--L-VSGS-D--DKTLKIWEL--SSGKCLK  105 (231)
Q Consensus        38 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~--l-~~~~-~--~g~i~~~d~--~~~~~~~  105 (231)
                      ...+++.....+.+.+||. +++....+..  ..+..+..-|    .|+.  + ++.. .  ++.|.+|++  .+++ +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            3456666677889999999 7887777753  3445554444    2332  2 3333 3  578999966  3333 33


Q ss_pred             eecC-------CCcceEEEEE--CCC-CC-EEEEeecCCcEEEEECC---C----CceeeeccCCCCCeEEEEEcCCCCe
Q psy4391         106 TLKG-------HSNYVFCCNF--NPQ-SN-LIVSGSFDESVRIWDVR---T----GKCLKTLPAHSDPVSAVHFNRDGSL  167 (231)
Q Consensus       106 ~~~~-------~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~v~d~~---~----~~~~~~~~~~~~~v~~~~~~~~~~~  167 (231)
                      .+..       ....+..+++  +|. +. +++....+|.+..|++.   .    .+.++.+.. .+.+..+...+....
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~  193 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR  193 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence            3311       1133444555  674 43 57777888999998883   2    244556654 356788889988889


Q ss_pred             EEEEecCCeEEEEeCC-----CCceeeeee-cCCCCCeEEEEE--CCCCC-EEEEEe-CCCeEEEEeCC
Q psy4391         168 IVSSSYDGLCRIWDTA-----SGQCLKTLI-DDDNPPVSFVKF--SPNGK-YILAAT-LDNTLKLWDSY  226 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~-----~~~~~~~~~-~~~~~~i~~~~~--s~~g~-~l~~~s-~d~~v~vwd~~  226 (231)
                      |+.+-++.-|..++.+     +.+.+..+. ......+..|++  .++|+ ||++++ .++...+||..
T Consensus       194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            9999998778888855     233333321 112234666666  66666 777777 46799999975

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.65  E-value=3.6e-06  Score=66.63  Aligned_cols=152  Identities=10%  Similarity=0.088  Sum_probs=95.6

Q ss_pred             EEEEEECC-CCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeec-CC----cEEEEECCCCce
Q psy4391          72 ISDVAWSS-DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DE----SVRIWDVRTGKC  145 (231)
Q Consensus        72 v~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~v~d~~~~~~  145 (231)
                      ...++++| ++..|+.+...+.|+.+|++++....... .......++++++++.|+.+.. ++    .+..++.. +..
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~  216 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF  216 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence            46788998 45556666555889999998766544433 4455788999999996665554 22    23334432 222


Q ss_pred             e--eeccCCCCCeEEEEEcC-CCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEE
Q psy4391         146 L--KTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLK  221 (231)
Q Consensus       146 ~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~  221 (231)
                      .  ..+.. ......++++| ++.++++-..++.|..++...+.............-..++|+|+|++|+.+. ..++|.
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            1  12211 12345678999 6666666667789999999876542222222222346799999999665554 567999


Q ss_pred             EEeCC
Q psy4391         222 LWDSY  226 (231)
Q Consensus       222 vwd~~  226 (231)
                      .++..
T Consensus       296 ~~~~d  300 (430)
T 3tc9_A          296 RSDYD  300 (430)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            98753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.64  E-value=1.4e-05  Score=63.39  Aligned_cols=195  Identities=10%  Similarity=0.079  Sum_probs=113.6

Q ss_pred             ceEEEEECCC--CCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC---C-cEEEEeCCCce
Q psy4391          29 AVSSVKFSPN--GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD---K-TLKIWELSSGK  102 (231)
Q Consensus        29 ~i~~~~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g-~i~~~d~~~~~  102 (231)
                      ....++|+|+  +..|+.+...+.|+.++..++.... +.........++++++++.+++....   . .+...+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            3568999985  4445554444889999987665543 33344568899999999944443321   1 12223322111


Q ss_pred             e-eeeecCCCcceEEEEECC-CCCEEEEeecCCcEEEEECCCCceeeec-cCC-CCCeEEEEEcCCCCeEEE-EecCCeE
Q psy4391         103 C-LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTL-PAH-SDPVSAVHFNRDGSLIVS-SSYDGLC  177 (231)
Q Consensus       103 ~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~~-~~~dg~i  177 (231)
                      . ...+. .......++++| ++.+.++-..++.|+.+|..++.....+ ... ......++|+|+++.|+. -...+.|
T Consensus       219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I  297 (433)
T 4hw6_A          219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI  297 (433)
T ss_dssp             CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence            0 01111 112234577898 6676666667788999999877642222 111 122346999999995554 4456789


Q ss_pred             EEEeCC--CCce--eeeeecC-C-------------CCCeEEEEE---------CCCCCEEEEEeCCCeEEEEeC
Q psy4391         178 RIWDTA--SGQC--LKTLIDD-D-------------NPPVSFVKF---------SPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       178 ~v~d~~--~~~~--~~~~~~~-~-------------~~~i~~~~~---------s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ..++..  ++..  ...+... .             -..-..+++         .++|.++++-...++|+.++.
T Consensus       298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            998765  2321  1111111 0             012355888         778877777667789999874

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.62  E-value=3e-06  Score=70.86  Aligned_cols=178  Identities=13%  Similarity=0.180  Sum_probs=114.4

Q ss_pred             CCcEEEeecCCCcEEEEEeccc---c----------------------------cEEEEEECCCCCEEEEecCCC-----
Q psy4391          48 DKLIKIWGAYDGKFEKTISGHK---L----------------------------GISDVAWSSDSRLLVSGSDDK-----   91 (231)
Q Consensus        48 dg~i~i~~~~~~~~~~~~~~~~---~----------------------------~v~~~~~~~~~~~l~~~~~~g-----   91 (231)
                      +|.|..+|..+++....+....   .                            ....++++|+...++.+..++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            5889999999998877664210   0                            001357778778888877665     


Q ss_pred             --------------cEEEEeCCCceeeeeecCC--C-------cceEEEEECCCCC---EEEEeecCCcEEEEECCCCce
Q psy4391          92 --------------TLKIWELSSGKCLKTLKGH--S-------NYVFCCNFNPQSN---LIVSGSFDESVRIWDVRTGKC  145 (231)
Q Consensus        92 --------------~i~~~d~~~~~~~~~~~~~--~-------~~v~~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~  145 (231)
                                    .|..+|.++++.+-.++..  .       .......+..+|+   .++.++.+|.++++|.++|+.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          3899999999877665431  1       2222222333554   688899999999999999987


Q ss_pred             eeeccCCC------------CCe------------------------EEEEEcCCCCeEEEEe-----------------
Q psy4391         146 LKTLPAHS------------DPV------------------------SAVHFNRDGSLIVSSS-----------------  172 (231)
Q Consensus       146 ~~~~~~~~------------~~v------------------------~~~~~~~~~~~l~~~~-----------------  172 (231)
                      +.......            .++                        ..++++|+...+++..                 
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            63322111            000                        1256777766655421                 


Q ss_pred             -------------------cCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         173 -------------------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       173 -------------------~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                                         .+|.|..||+.+++.+-+.....  +.....+...|.++++++.|+.++.||...
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~--~~~~~~~~t~gg~vf~g~~dg~l~a~d~~t  488 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNGGTLSTAGNLVFQGTAAGQMHAYSADK  488 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC--CCcCceeEeCCCEEEEECCcccchhhhhhc
Confidence                               23789999999998754443322  122223344577888999999999999743

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.59  E-value=8.5e-05  Score=56.33  Aligned_cols=196  Identities=7%  Similarity=0.011  Sum_probs=116.5

Q ss_pred             cceEEEEECCCCCEEE-EEeCCCcEEEeecCCCcE-EEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCceee
Q psy4391          28 KAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~~~  104 (231)
                      ....+++|.+.+..|+ +-...+.|..++...... ...+.........+++.+.+..| ++-...+.|.+++++.....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            3466889988655554 444567888888765432 12222222345678888755544 55556778999998754333


Q ss_pred             eeecCCCcceEEEEECCCCCEEEEeec--CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCeEEEEe
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWD  181 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~v~d  181 (231)
                      ..+.........++++|.+..|+....  .+.|..+++............-.....++++|++..|+.+ +..+.|..+|
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            333333455778899987666665553  5788888886433222222223456889999976666554 4567899999


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +.... .+.+..........+++..+ ..+.+-...+.|..+|.
T Consensus       195 ~dG~~-~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          195 LDGTN-RQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNK  236 (318)
T ss_dssp             TTSCS-CEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEEEET
T ss_pred             CCCCc-eEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEEEEC
Confidence            86433 33333222223345666533 33344445678888875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.59  E-value=0.00014  Score=62.08  Aligned_cols=189  Identities=10%  Similarity=0.084  Sum_probs=122.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec--------ccccEEEEEECCCCCEEEEecCCCcEEEEeCC
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG--------HKLGISDVAWSSDSRLLVSGSDDKTLKIWELS   99 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~   99 (231)
                      ..|.++...++|.+. .|+.++-+..|+..++........        ....|.++...++++.|..|+.++-|..||..
T Consensus       357 ~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~  435 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN  435 (795)
T ss_dssp             SSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred             CeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence            458899988888754 466777888998876654332211        12458888888888745566666678999988


Q ss_pred             Cceeeeeec----CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc------CCCCCeEEEEEcCCCCeEE
Q psy4391         100 SGKCLKTLK----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP------AHSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus       100 ~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~  169 (231)
                      +++......    .....+.++...+++++.+...  +.+..||..+++......      .....|.++...++|.+.+
T Consensus       436 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi  513 (795)
T 4a2l_A          436 SGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI  513 (795)
T ss_dssp             TCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred             CCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE
Confidence            765433221    1235688888888888666543  458899988765432211      1235788999998888665


Q ss_pred             EEecCCeEEEEeCCCCceeeeeec------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         170 SSSYDGLCRIWDTASGQCLKTLID------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~------~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ...  +-+..||..+++.  .+..      .....+.++..+++|.+.++.. + -+..||.
T Consensus       514 gt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~  569 (795)
T 4a2l_A          514 GGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNE  569 (795)
T ss_dssp             EES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEET
T ss_pred             EeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECC
Confidence            544  4577888876654  2211      1223578888899998655443 3 4666664

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.59  E-value=0.00018  Score=61.40  Aligned_cols=192  Identities=11%  Similarity=0.134  Sum_probs=123.3

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec------ccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG------HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      ..|.++...++|.+. .|+.++-|..|+..+.........      ....|.++...++|... .|+.++-|..|+..++
T Consensus       310 ~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~  387 (795)
T 4a2l_A          310 RSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQ  387 (795)
T ss_dssp             SCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTC
T ss_pred             CcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCC
Confidence            468888888888754 456677788887654433221110      13458888888887754 5666767888998776


Q ss_pred             eeeeeecC--------CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc----CCCCCeEEEEEcCCCCeEE
Q psy4391         102 KCLKTLKG--------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP----AHSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus       102 ~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~  169 (231)
                      +.......        ....|.++..++++++|..|+.++.|..+|.++++......    .....|.++...+++.+.+
T Consensus       388 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi  467 (795)
T 4a2l_A          388 RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL  467 (795)
T ss_dssp             CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE
T ss_pred             cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE
Confidence            54332211        13568888888888856667777779999988776432211    1245788999888887655


Q ss_pred             EEecCCeEEEEeCCCCceeeeeec-----CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         170 SSSYDGLCRIWDTASGQCLKTLID-----DDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~-----~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .. .+ -+..||..+++.......     .....|..+..+++|+..+...  +-|..||.
T Consensus       468 gt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~  524 (795)
T 4a2l_A          468 GT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQ  524 (795)
T ss_dssp             EE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEE
T ss_pred             Ee-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeC
Confidence            44 44 478899887654322111     1124578888999998666554  44666664

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.59  E-value=6.4e-05  Score=58.61  Aligned_cols=190  Identities=7%  Similarity=-0.053  Sum_probs=115.6

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEeCCCceeeeeecCC
Q psy4391          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLKTLKGH  110 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~~~~~~~~~~~~  110 (231)
                      +.+..+ ..+|+.+ ....|+..+.........+.. ......++|++.+..|+ +-...+.|..+++........+...
T Consensus        81 C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~  157 (386)
T 3v65_B           81 CKALGP-EPVLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG  157 (386)
T ss_dssp             EEECSS-CCEEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred             ECCccc-cceeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence            444444 3344433 345677777765554444433 34578899998666555 4456778999998876543333332


Q ss_pred             CcceEEEEECCCCC-EEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe-cC-CeEEEEeCCCCce
Q psy4391         111 SNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YD-GLCRIWDTASGQC  187 (231)
Q Consensus       111 ~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~v~d~~~~~~  187 (231)
                      ......+++++.+. +.++-...+.|.+.++........+...-.....++++|.+..|+... .. +.|..+++.... 
T Consensus       158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-  236 (386)
T 3v65_B          158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-  236 (386)
T ss_dssp             CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-
T ss_pred             CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-
Confidence            23345677887544 445555677888888875433233333335678999998776665544 33 678888876543 


Q ss_pred             eeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         188 LKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       188 ~~~~~~~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      ...+.......-..++++|++..|+.+.. .++|..+|.
T Consensus       237 ~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred             cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            23333222333578999987776666554 568888875

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.57  E-value=7.7e-06  Score=68.29  Aligned_cols=113  Identities=13%  Similarity=0.247  Sum_probs=70.5

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------cEEEeecCCCcEEE--EEec-ccccEEEEEECCCCCEEEEecC-CCcEEE
Q psy4391          32 SVKFSP-NGEWLASSSADK-----------LIKIWGAYDGKFEK--TISG-HKLGISDVAWSSDSRLLVSGSD-DKTLKI   95 (231)
Q Consensus        32 ~~~~~~-~~~~l~~~~~dg-----------~i~i~~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~-~g~i~~   95 (231)
                      ..++.+ +++.++.|+.+.           .+.+||..+++...  .+.. +.......++.++++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456666 888888876542           57889887765322  2221 1222334677788998888884 458999


Q ss_pred             EeCCCceeeeeecCCCcc-eEEEEECCCCCEEEEee-cC-----CcEEEEECCCCc
Q psy4391          96 WELSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGS-FD-----ESVRIWDVRTGK  144 (231)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-~d-----~~i~v~d~~~~~  144 (231)
                      ||..+.+....-...... -..+...+++++++.|+ .+     ..+.+||..+.+
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            999876543221111111 12344567889999988 34     468899987654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.56  E-value=9.7e-06  Score=66.53  Aligned_cols=179  Identities=17%  Similarity=0.124  Sum_probs=109.9

Q ss_pred             EEECCCCCEEEEEeCC----------------CcEEEeecCCCcEEEEEeccc----------ccEEEEEECCCCC---E
Q psy4391          33 VKFSPNGEWLASSSAD----------------KLIKIWGAYDGKFEKTISGHK----------LGISDVAWSSDSR---L   83 (231)
Q Consensus        33 ~~~~~~~~~l~~~~~d----------------g~i~i~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~---~   83 (231)
                      +++.++...++.+..+                +.|..+|..+++....+....          .++. +....+|+   .
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~  318 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPL  318 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEE
Confidence            5566666666655432                358888998888776654211          1111 12224664   5


Q ss_pred             EEEecCCCcEEEEeCCCceeeeeecCCC-------------cce--------------------------EEEEECCCCC
Q psy4391          84 LVSGSDDKTLKIWELSSGKCLKTLKGHS-------------NYV--------------------------FCCNFNPQSN  124 (231)
Q Consensus        84 l~~~~~~g~i~~~d~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~~~~  124 (231)
                      ++.++.+|.++++|.++++.+...+...             .++                          ..++++|+..
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g  398 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR  398 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred             EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence            6778889999999999988765443211             001                          1245677777


Q ss_pred             EEEEee-------------------------------------cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCe
Q psy4391         125 LIVSGS-------------------------------------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSL  167 (231)
Q Consensus       125 ~l~~~~-------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~  167 (231)
                      +++...                                     .++.|..||+.+++.+.+..... ++....+...+..
T Consensus       399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~  477 (571)
T 2ad6_A          399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGL  477 (571)
T ss_dssp             EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTE
T ss_pred             EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCE
Confidence            766653                                     24789999999998877764322 2222222224567


Q ss_pred             EEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEE
Q psy4391         168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA  213 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  213 (231)
                      ++.++.||.++.+|.++++.+-++.........-+.+..+|+.++.
T Consensus       478 v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          478 VWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            7778999999999999999887765443221122335567764443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.56  E-value=1.2e-05  Score=65.89  Aligned_cols=177  Identities=15%  Similarity=0.122  Sum_probs=110.8

Q ss_pred             CCcEEEeecCCCcEEEEEeccccc-------------------------------------E-EEEEECCCCCEEEEecC
Q psy4391          48 DKLIKIWGAYDGKFEKTISGHKLG-------------------------------------I-SDVAWSSDSRLLVSGSD   89 (231)
Q Consensus        48 dg~i~i~~~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~~   89 (231)
                      +|.|..+|..+++....+......                                     + ..+++.++...++.+..
T Consensus       175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g  254 (571)
T 2ad6_A          175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG  254 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECC
Confidence            789999999999887665432110                                     0 12455666566665553


Q ss_pred             C----------------CcEEEEeCCCceeeeeecCC----------CcceEEEEECCCCC---EEEEeecCCcEEEEEC
Q psy4391          90 D----------------KTLKIWELSSGKCLKTLKGH----------SNYVFCCNFNPQSN---LIVSGSFDESVRIWDV  140 (231)
Q Consensus        90 ~----------------g~i~~~d~~~~~~~~~~~~~----------~~~v~~~~~~~~~~---~l~~~~~d~~i~v~d~  140 (231)
                      +                +.|..+|.++++.+-.++..          ...+ -.....+|+   .++.++.+|.++++|.
T Consensus       255 ~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~  333 (571)
T 2ad6_A          255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNR  333 (571)
T ss_dssp             CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred             CCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEEC
Confidence            2                25889999998876655421          1222 122234663   5777888999999999


Q ss_pred             CCCceeeeccCCC-------------CCe--------------------------EEEEEcCCCCeEEEEe---------
Q psy4391         141 RTGKCLKTLPAHS-------------DPV--------------------------SAVHFNRDGSLIVSSS---------  172 (231)
Q Consensus       141 ~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~~~~~l~~~~---------  172 (231)
                      ++|+.+.......             .++                          ..++++|+..++++..         
T Consensus       334 ~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~  413 (571)
T 2ad6_A          334 ENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEP  413 (571)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccc
Confidence            9998776543221             111                          2357788777776653         


Q ss_pred             ----------------------------cCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         173 ----------------------------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       173 ----------------------------~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                                                  .+|.+..||+.+++.+-+......  +....+...+..+++++.||.|..||
T Consensus       414 ~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~--~~~~~~~t~gg~v~~g~~dg~l~a~D  491 (571)
T 2ad6_A          414 FMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA--AWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC--CCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             cccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC--ccceeEEECCCEEEEEcCCCeEEEEE
Confidence                                        347899999999886655433221  11111222356777789999999999


Q ss_pred             CCC
Q psy4391         225 SYP  227 (231)
Q Consensus       225 ~~~  227 (231)
                      ...
T Consensus       492 ~~t  494 (571)
T 2ad6_A          492 NKD  494 (571)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            744

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.53  E-value=3.9e-06  Score=71.16  Aligned_cols=151  Identities=10%  Similarity=0.002  Sum_probs=91.6

Q ss_pred             cEEEEEEC-CCCCEEEEecC-CC----cEEEEeCCCc-eeeee-ecCCCcceEEEEECCCCCEEEEeecC-----CcEEE
Q psy4391          71 GISDVAWS-SDSRLLVSGSD-DK----TLKIWELSSG-KCLKT-LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRI  137 (231)
Q Consensus        71 ~v~~~~~~-~~~~~l~~~~~-~g----~i~~~d~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v  137 (231)
                      .+...+|+ |||++|+.+.. +|    .|+++|+.++ +.+.. +.   .....+.|+||++.|+....+     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57788999 99998875433 23    4999999988 63211 11   112356899999888877664     25788


Q ss_pred             EECCCCcee--eecc-CCCCCeEEEEEcCCCCeEEEEec---CCeEEEEeCCCCc-ee--eeeecCCCCCeEEEEECCCC
Q psy4391         138 WDVRTGKCL--KTLP-AHSDPVSAVHFNRDGSLIVSSSY---DGLCRIWDTASGQ-CL--KTLIDDDNPPVSFVKFSPNG  208 (231)
Q Consensus       138 ~d~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~-~~--~~~~~~~~~~i~~~~~s~~g  208 (231)
                      +++.+++..  ..+. ........+.|+|||++|+..+.   ...|.++|+.++. ..  ..+..........+.|+. |
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g  330 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T  330 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence            888776421  1221 22334567899999998876553   3468888988752 12  333333333444454444 5


Q ss_pred             CEEEEEe-CC--C--eEEEEeC
Q psy4391         209 KYILAAT-LD--N--TLKLWDS  225 (231)
Q Consensus       209 ~~l~~~s-~d--~--~v~vwd~  225 (231)
                      +.|+..+ .+  +  .|..+|.
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~  352 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPR  352 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEET
T ss_pred             CEEEEEeCCCCCCCcEEEEEcC
Confidence            5554444 33  2  5555554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.50  E-value=2.2e-05  Score=64.50  Aligned_cols=181  Identities=15%  Similarity=0.175  Sum_probs=111.1

Q ss_pred             EEEECCCCCEEEEEeC--------------------C----CcEEEeecCCCcEEEEEec--cc--------ccEEEEEE
Q psy4391          32 SVKFSPNGEWLASSSA--------------------D----KLIKIWGAYDGKFEKTISG--HK--------LGISDVAW   77 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~--------------------d----g~i~i~~~~~~~~~~~~~~--~~--------~~v~~~~~   77 (231)
                      ..++.|+..+++.+..                    |    +.|.-+|..+++....+..  |.        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4567777777776552                    2    5788999999988776642  21        1111 122


Q ss_pred             C-CCCC---EEEEecCCCcEEEEeCCCceeeeeecCCC-------------cc--------------------e------
Q psy4391          78 S-SDSR---LLVSGSDDKTLKIWELSSGKCLKTLKGHS-------------NY--------------------V------  114 (231)
Q Consensus        78 ~-~~~~---~l~~~~~~g~i~~~d~~~~~~~~~~~~~~-------------~~--------------------v------  114 (231)
                      . .+|+   .++.++.+|.++++|.++++.+.......             ..                    .      
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            1 4564   67788999999999999988765443211             00                    0      


Q ss_pred             ------EEEEECCCCCEEEEee---------------------------------cCCcEEEEECCCCceeeeccCCCCC
Q psy4391         115 ------FCCNFNPQSNLIVSGS---------------------------------FDESVRIWDVRTGKCLKTLPAHSDP  155 (231)
Q Consensus       115 ------~~~~~~~~~~~l~~~~---------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~  155 (231)
                            ..++++|+..+++...                                 .+|.|..||+.+++.+.+..... +
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~  487 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-P  487 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-C
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-C
Confidence                  0234566555554432                                 25789999999998876654322 1


Q ss_pred             eEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC-EEEEE
Q psy4391         156 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAA  214 (231)
Q Consensus       156 v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~  214 (231)
                      ...-.....+.+++.++.||.++.||.++++.+-++.........-+.+..+|+ |+++.
T Consensus       488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence            111111123567778999999999999999988776543322112245667786 44443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.49  E-value=0.00021  Score=56.00  Aligned_cols=182  Identities=7%  Similarity=-0.013  Sum_probs=114.4

Q ss_pred             EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEe-cCCCcEEEEeCCCc----eeeeeecCCCcceE
Q psy4391          41 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG-SDDKTLKIWELSSG----KCLKTLKGHSNYVF  115 (231)
Q Consensus        41 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~g~i~~~d~~~~----~~~~~~~~~~~~v~  115 (231)
                      +|+.+. ...|+..+.........+. ....+..++|++.+..|+.+ ...+.|+.+++...    .....+........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            444443 4678888876555444443 34567889999866666554 45678888888752    22233333344567


Q ss_pred             EEEECCC-CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec--CCeEEEEeCCCCceeeeee
Q psy4391         116 CCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQCLKTLI  192 (231)
Q Consensus       116 ~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~  192 (231)
                      .+++++. +++.++-...+.|.+.++........+.........++++|.+..|+....  .+.|...++.... ...+.
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~  241 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV  241 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEE
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEE
Confidence            7888874 455555566788999998765443333333456789999997666665542  3678888886543 33333


Q ss_pred             cCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         193 DDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       193 ~~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      ...-.....|++++++..|+.+.. .++|..+|.
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~  275 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  275 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeC
Confidence            333234578999988877777654 568888875

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.48  E-value=7.6e-05  Score=56.34  Aligned_cols=154  Identities=12%  Similarity=0.150  Sum_probs=104.8

Q ss_pred             EEEEEECCCCCEEEEec-CCCcEEEEeCCCceeee-eecC----C--CcceEEEEE---CCCCCEEEEeec---------
Q psy4391          72 ISDVAWSSDSRLLVSGS-DDKTLKIWELSSGKCLK-TLKG----H--SNYVFCCNF---NPQSNLIVSGSF---------  131 (231)
Q Consensus        72 v~~~~~~~~~~~l~~~~-~~g~i~~~d~~~~~~~~-~~~~----~--~~~v~~~~~---~~~~~~l~~~~~---------  131 (231)
                      ..++.|++....+..++ ..+.|..|+...+.... .+..    .  ...+..+.+   .|+++++++...         
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            34578987555555554 68999999997553322 2221    1  113578899   688888876442         


Q ss_pred             ----CCcEEEEECC---CCceeeeccC-------------CCCCeEEEEEcCCCCeEEEEecC-CeEEEEeCCCCceeee
Q psy4391         132 ----DESVRIWDVR---TGKCLKTLPA-------------HSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTASGQCLKT  190 (231)
Q Consensus       132 ----d~~i~v~d~~---~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~  190 (231)
                          +..|..||+.   +++.+.....             .......++..++|+..++++.. +.|..++..... +..
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~~~  173 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-VST  173 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-EEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-Eee
Confidence                5779999999   7766543321             11247789999999999999988 998888876542 222


Q ss_pred             eecC-----CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         191 LIDD-----DNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       191 ~~~~-----~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +...     .....+.|+++|+|..|++...+|++..+|..
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            2211     11225678999999998888779999999953

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.40  E-value=0.00068  Score=57.71  Aligned_cols=195  Identities=8%  Similarity=-0.001  Sum_probs=116.1

Q ss_pred             cceEEEEECCCCCEEEE-EeCCCcEEEeecCCC----cEEEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEeCCCc
Q psy4391          28 KAVSSVKFSPNGEWLAS-SSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSG  101 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~-~~~dg~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~~~  101 (231)
                      ..+.+++|.+.+..|+. -...+.|+.+++...    .....+.........+++.+.++.|+ +-...+.|.+.++...
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence            45678888886555544 344567777776532    22233332334566788888775554 5556788999998865


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeec--CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCeEE
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCR  178 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~  178 (231)
                      .....+.........++++|.+..|+....  .+.|...++........+...-.....|++++.+..|+.+ .....|.
T Consensus       504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~  583 (791)
T 3m0c_C          504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  583 (791)
T ss_dssp             SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence            544344334455788999998666655543  3679999987544333333333567899999876666655 4457899


Q ss_pred             EEeCCCCceeeeeecC--CCCCeEEEEECCCCCEEEEEe-CCCeEEEEeC
Q psy4391         179 IWDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~--~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~  225 (231)
                      .+++.... ...+...  .-.....|++.  +.+|+.+. ..+.|...|.
T Consensus       584 ~~d~dG~~-~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          584 SIDVNGGN-RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             EEETTSCS-CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred             EEecCCCc-eEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeC
Confidence            99986543 3333322  11222345553  33455444 4567776663

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.39  E-value=4.3e-05  Score=62.96  Aligned_cols=181  Identities=14%  Similarity=0.132  Sum_probs=108.9

Q ss_pred             EEECCCCCEEEEEeCC----------------CcEEEeecCCCcEEEEEecccc----------cEEEEEEC-CCC---C
Q psy4391          33 VKFSPNGEWLASSSAD----------------KLIKIWGAYDGKFEKTISGHKL----------GISDVAWS-SDS---R   82 (231)
Q Consensus        33 ~~~~~~~~~l~~~~~d----------------g~i~i~~~~~~~~~~~~~~~~~----------~v~~~~~~-~~~---~   82 (231)
                      .++.++..+++.+..+                +.|.-+|..+++....+.....          ++. +... .+|   .
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~  324 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK  324 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEE
Confidence            4566677777766544                3788889998887766543211          111 1221 456   4


Q ss_pred             EEEEecCCCcEEEEeCCCceeeeeecCCC-------------cce--------------------------EEEEECCCC
Q psy4391          83 LLVSGSDDKTLKIWELSSGKCLKTLKGHS-------------NYV--------------------------FCCNFNPQS  123 (231)
Q Consensus        83 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~-------------~~v--------------------------~~~~~~~~~  123 (231)
                      .++.++.+|.++++|.++++.+.......             ..+                          ..++++|+.
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  404 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR  404 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence            57778899999999999988765443110             000                          123456655


Q ss_pred             CEEEEee---------------------------------------cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCC
Q psy4391         124 NLIVSGS---------------------------------------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD  164 (231)
Q Consensus       124 ~~l~~~~---------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  164 (231)
                      .+++...                                       ..|.|..||+.+++.+....... +...-...-.
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~ta  483 (599)
T 1w6s_A          405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMATA  483 (599)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEET
T ss_pred             CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcceEec
Confidence            5554421                                       34679999999998877654221 1111111224


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC-EEEEEe
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YILAAT  215 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~s  215 (231)
                      +.+++.++.||.++.||.++++.+-++.........-+.+..+|+ |+++.+
T Consensus       484 gg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~  535 (599)
T 1w6s_A          484 GDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY  535 (599)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence            667777999999999999999987766433222112244556776 454433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.39  E-value=5.2e-05  Score=60.04  Aligned_cols=153  Identities=9%  Similarity=0.096  Sum_probs=92.5

Q ss_pred             EEEEEECCC--CCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecC---C-cEEEEECCCCce
Q psy4391          72 ISDVAWSSD--SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD---E-SVRIWDVRTGKC  145 (231)
Q Consensus        72 v~~~~~~~~--~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~i~v~d~~~~~~  145 (231)
                      ...++|+|+  +..|+.+...+.|+.+|..+++...... .......++++++++++++....   . .+..++...+..
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence            567899984  4445555444899999998776554433 44557889999999955544321   1 133333222111


Q ss_pred             e-eeccCCCCCeEEEEEcC-CCCeEEEEecCCeEEEEeCCCCceeeeeecC-CCCCeEEEEECCCCCEEEEEe-CCCeEE
Q psy4391         146 L-KTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAAT-LDNTLK  221 (231)
Q Consensus       146 ~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~s-~d~~v~  221 (231)
                      . ..+. .......++++| ++.++++-..++.|+.+|..++.....+... ....-..++|+|+|++|+.+. ..++|.
T Consensus       220 ~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~  298 (433)
T 4hw6_A          220 ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY  298 (433)
T ss_dssp             CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence            0 1111 122345678899 6666666666789999999877652333222 222234699999999666555 467999


Q ss_pred             EEeCC
Q psy4391         222 LWDSY  226 (231)
Q Consensus       222 vwd~~  226 (231)
                      .++..
T Consensus       299 ~~~~d  303 (433)
T 4hw6_A          299 RVDYN  303 (433)
T ss_dssp             EEEBC
T ss_pred             EEeCC
Confidence            97743

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.37  E-value=0.00031  Score=53.22  Aligned_cols=163  Identities=7%  Similarity=-0.046  Sum_probs=99.6

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec--CCCcEEEEeCCCceeee
Q psy4391          29 AVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS--DDKTLKIWELSSGKCLK  105 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~g~i~~~d~~~~~~~~  105 (231)
                      ....+++.+.+..|+ +-...+.|.+++.........+.........+++.|.+..|+.+.  ..+.|...+++......
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  159 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI  159 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE
Confidence            345677876555444 444567888888754433333333445578899998766666554  35788888876433322


Q ss_pred             eecCCCcceEEEEECCCCCEEEEe-ecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCC
Q psy4391         106 TLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS  184 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~  184 (231)
                      .+...-.....+++++++..|+.+ ...+.|..+|+..................+++.. +..+.+-...+.|..++..+
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~  238 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYT  238 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCC
Confidence            333333456789999976666555 4567899999874332222222334556777753 34455555678899999877


Q ss_pred             Cceeeeee
Q psy4391         185 GQCLKTLI  192 (231)
Q Consensus       185 ~~~~~~~~  192 (231)
                      ++....+.
T Consensus       239 G~~~~~i~  246 (318)
T 3sov_A          239 GEGLREIH  246 (318)
T ss_dssp             CCSCEEEE
T ss_pred             CCceEEEe
Confidence            76555543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.37  E-value=0.00036  Score=53.05  Aligned_cols=189  Identities=12%  Similarity=0.079  Sum_probs=106.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCC-cEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeC--CCceeee
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWEL--SSGKCLK  105 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~--~~~~~~~  105 (231)
                      .+..+.+.+++..++++ .+|.+..- ...+ ............+..+.+.+++..++++...+..+-.|-  .+.+.+.
T Consensus       123 ~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~  200 (327)
T 2xbg_A          123 SPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN  200 (327)
T ss_dssp             CEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE
T ss_pred             CeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC
Confidence            45677776666655554 45544321 1123 233333334456888999998887766654433344442  2223221


Q ss_pred             eecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccC----CCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA----HSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                        ......+..+.+.+++.+++ .+.+|.+.+.+...++.-..+..    ....+.++.+.+++..++++. +|.+ .+.
T Consensus       201 --~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S  275 (327)
T 2xbg_A          201 --RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCS  275 (327)
T ss_dssp             --CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEE
T ss_pred             --CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEe
Confidence              12334577788888887664 45567777764332333222221    223578899998877666654 6666 344


Q ss_pred             CCCCceeeeeecC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         182 TASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       182 ~~~~~~~~~~~~~--~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ...++....+...  ....+..+.|.++++ +++++.+|.|.-++.
T Consensus       276 ~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          276 QDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             SSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             CCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            4555544433321  123466777876555 556667898887764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=0.00048  Score=58.64  Aligned_cols=189  Identities=12%  Similarity=0.123  Sum_probs=115.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      ..|.++...++|.+.+ |+.++.+..++..+++......  .....|.++...+++...+.. . +-+..||..+++...
T Consensus       407 ~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~  483 (781)
T 3v9f_A          407 NSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKKVIH  483 (781)
T ss_dssp             SBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSSCCE
T ss_pred             cceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCeEEe
Confidence            4578888887777554 5666678888876654432211  123468888888887755444 4 458888987765433


Q ss_pred             eecCC-----CcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc---CCCCCeEEEEEcCCCCeEEEEecCCeE
Q psy4391         106 TLKGH-----SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP---AHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (231)
Q Consensus       106 ~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i  177 (231)
                      .....     ...+.++..+++|.+.+. +.++-+..||.++++......   .....|.++...++|.+.++. .+|.+
T Consensus       484 ~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv  561 (781)
T 3v9f_A          484 HYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLV  561 (781)
T ss_dssp             EECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEE
T ss_pred             cccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCce
Confidence            22211     356888888888887664 443447788887665322211   123468889888888865544 46665


Q ss_pred             EEEeCCCCceeeeeecC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         178 RIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~---~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      ..||..+++.. .+...   ....+.++..+++|.+.++ +.+| |..||
T Consensus       562 ~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~  608 (781)
T 3v9f_A          562 CFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYI  608 (781)
T ss_dssp             EESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEE
T ss_pred             EEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEE
Confidence            88888776532 22211   1234677888888876554 4444 44444

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.36  E-value=5.7e-06  Score=69.51  Aligned_cols=195  Identities=9%  Similarity=0.013  Sum_probs=108.1

Q ss_pred             ceEEEEECCCCCEEEEEe-CCCcEEEeecCC----CcEEEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCce
Q psy4391          29 AVSSVKFSPNGEWLASSS-ADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGK  102 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~  102 (231)
                      .+..++|++.+..|+.+. ..+.|+.++...    ......+.........+++.+.+..| ++-...+.|.++++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            456788988777666543 457888887754    11111121112234567887544444 444567889999987654


Q ss_pred             eeeeecCCCcceEEEEECCCCCEEEEeec--CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEE-EEecCCeEEE
Q psy4391         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDGLCRI  179 (231)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~v  179 (231)
                      ....+.........++++|.+..|+....  .+.|.++++........+...-.....|+++|++..|+ +-+..+.|.+
T Consensus       487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~  566 (699)
T 1n7d_A          487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  566 (699)
T ss_dssp             EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEE
Confidence            43333322334567889987665555443  26788887754322111112223456789998766555 4455678999


Q ss_pred             EeCCCCceeeeeecC--CCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         180 WDTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       180 ~d~~~~~~~~~~~~~--~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +++.... ...+...  .......|++..+ .++++....++|..+|.
T Consensus       567 ~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          567 IDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR  612 (699)
T ss_dssp             ECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred             EccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence            9986433 2333221  1111123455443 33333444678888875

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.36  E-value=0.00042  Score=59.00  Aligned_cols=191  Identities=12%  Similarity=0.063  Sum_probs=117.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEE---ecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      ..|.++...++|.+. .|+.++-+..|+..++......   ......|.++...+++...+ |+.++-+..++..+++..
T Consensus       363 ~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             SCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred             cceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence            458888888877754 4455666888886543221110   11234588888887777554 555567888898776543


Q ss_pred             eeec--CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC-----CCCeEEEEEcCCCCeEEEEecCCeE
Q psy4391         105 KTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-----SDPVSAVHFNRDGSLIVSSSYDGLC  177 (231)
Q Consensus       105 ~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i  177 (231)
                      ....  .....+.++...+++.+.+. +. +.|..+|..+++........     ...|.++...++|.+.+ |+.++-+
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl  517 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGV  517 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCE
T ss_pred             EeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCE
Confidence            3221  13456888888888776554 44 56889998876543222111     35788999988887655 4443447


Q ss_pred             EEEeCCCCceeeeeecC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         178 RIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~---~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ..+|..+++.. .+...   ....|.++..+++|.+.++. .+|-|..||.
T Consensus       518 ~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~  566 (781)
T 3v9f_A          518 GIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSA  566 (781)
T ss_dssp             EEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCT
T ss_pred             EEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECC
Confidence            77888766532 22211   13357888888998865544 4665477764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.36  E-value=0.0002  Score=58.91  Aligned_cols=134  Identities=17%  Similarity=0.217  Sum_probs=83.2

Q ss_pred             CcEEEEeCCCceeeeeecC--CC--------cceEEEEEC-CCCC---EEEEeecCCcEEEEECCCCceeeeccCCC---
Q psy4391          91 KTLKIWELSSGKCLKTLKG--HS--------NYVFCCNFN-PQSN---LIVSGSFDESVRIWDVRTGKCLKTLPAHS---  153 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~d~~i~v~d~~~~~~~~~~~~~~---  153 (231)
                      +.|..+|.++++.+-.++.  +.        ..+. .... .+|+   .++.++.+|.++++|.++|+.+.......   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            5799999999987766542  21        1222 2221 4563   78888999999999999998775543221   


Q ss_pred             ----------CCe--------------------------------EEEEEcCCCCeEEEEe-------------------
Q psy4391         154 ----------DPV--------------------------------SAVHFNRDGSLIVSSS-------------------  172 (231)
Q Consensus       154 ----------~~v--------------------------------~~~~~~~~~~~l~~~~-------------------  172 (231)
                                .++                                ..++++|+...+++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      000                                1346677655555432                   


Q ss_pred             --------------cCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         173 --------------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       173 --------------~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                                    .+|.|..||+.+++.+=+.....  +...-.....+..++.++.||.++.||...
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~t  516 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKS  516 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTT
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCC
Confidence                          25789999999998654433221  111111112356788899999999999743

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=98.34  E-value=0.00015  Score=56.48  Aligned_cols=149  Identities=15%  Similarity=0.197  Sum_probs=96.7

Q ss_pred             CCCCEEEEecCCCcEEEEeCCCceeeeeecCC----CcceEEEEECCCCCEEEEeecCCcEEEEECCCCce---------
Q psy4391          79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH----SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---------  145 (231)
Q Consensus        79 ~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------  145 (231)
                      .+|..++.+- ++.||..++......+.++..    -..+..+..+|+|++||..+. ..|.|..+..+..         
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence            3444454443 367787777643333333332    224677899999999998765 5788988873321         


Q ss_pred             ---eeeccC------CCCCeEEEEEcCC---CCeEEEEecCCeEEEEeCCCCceee-eee------c--CCCCCeEEEEE
Q psy4391         146 ---LKTLPA------HSDPVSAVHFNRD---GSLIVSSSYDGLCRIWDTASGQCLK-TLI------D--DDNPPVSFVKF  204 (231)
Q Consensus       146 ---~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~-~~~------~--~~~~~i~~~~~  204 (231)
                         .+.+..      ...+|..+.|+|-   +..|++-..|+.|++||+....... .+.      .  .....+.+++|
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEE
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEE
Confidence               111111      2467999999994   5689999999999999998632111 110      0  11145788999


Q ss_pred             CCCCCEEEEEe--CCCeEEEEeCCCCCCC
Q psy4391         205 SPNGKYILAAT--LDNTLKLWDSYPCLPK  231 (231)
Q Consensus       205 s~~g~~l~~~s--~d~~v~vwd~~~~~~~  231 (231)
                      .++|=.|.+.+  .+|.  ||-.+|+||.
T Consensus       188 g~~~lTLYvl~~t~~GD--IYAlcP~LP~  214 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGD--IFAFYPFLPS  214 (452)
T ss_dssp             CTTSSCEEEEECTTSCE--EEEESSCCCS
T ss_pred             cCCCcEEEEEecCCCCC--EEEECCCCcc
Confidence            99887777755  5555  7888999994

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.31  E-value=0.00016  Score=52.91  Aligned_cols=160  Identities=13%  Similarity=0.152  Sum_probs=98.8

Q ss_pred             EecccccEEEEEECCCCCEEE-EecCCCcEEEEeCCCceeeeeecC-CCcceEEEEECCCCCEEEEeecCCcEEEEECCC
Q psy4391          65 ISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT  142 (231)
Q Consensus        65 ~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  142 (231)
                      +.+-...+..++|+|++..|+ +...++.|...|.. ++..+.+.- .....-.+++.+++.++++.-.++.+.++++..
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            344445789999999876654 56678889999988 776666532 123466788888888767666677888888765


Q ss_pred             Cce---eeecc------CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCC---CCceeeeee------cCCCCCeEEEEE
Q psy4391         143 GKC---LKTLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA---SGQCLKTLI------DDDNPPVSFVKF  204 (231)
Q Consensus       143 ~~~---~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~---~~~~~~~~~------~~~~~~i~~~~~  204 (231)
                      ...   +....      ........++++|.+..|+++.......+|...   ....+..+.      ......+..+++
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~  180 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEF  180 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEE
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEE
Confidence            432   11111      123456899999998777776655444444432   111111110      011223567888


Q ss_pred             CCCCC-EEEEEeCCCeEEEEeC
Q psy4391         205 SPNGK-YILAATLDNTLKLWDS  225 (231)
Q Consensus       205 s~~g~-~l~~~s~d~~v~vwd~  225 (231)
                      +|... +++.....+.+.++|.
T Consensus       181 dp~tg~lliLS~~s~~L~~~d~  202 (255)
T 3qqz_A          181 NQQKNTLLVLSHESRALQEVTL  202 (255)
T ss_dssp             ETTTTEEEEEETTTTEEEEECT
T ss_pred             cCCCCeEEEEECCCCeEEEEcC
Confidence            88654 4455555667777775

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.28  E-value=0.0013  Score=55.94  Aligned_cols=176  Identities=6%  Similarity=-0.037  Sum_probs=108.3

Q ss_pred             CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEeCCCc----eeeeeecCCCcceEEEEECCC
Q psy4391          48 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSG----KCLKTLKGHSNYVFCCNFNPQ  122 (231)
Q Consensus        48 dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~~~----~~~~~~~~~~~~v~~~~~~~~  122 (231)
                      ...|+..++........+.. ...+..++|++....|+ +-...+.|+.+++...    .....+.........+++++.
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             BSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             ccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            45677777765544444433 44577899998655554 4455678888888752    222333323344567888877


Q ss_pred             CCE-EEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec--CCeEEEEeCCCCceeeeeecCCCCCe
Q psy4391         123 SNL-IVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPV  199 (231)
Q Consensus       123 ~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~~i  199 (231)
                      +.. +++-...+.|.+.++........+...-.....|+++|.+..|+....  .+.|...++.... ...+....-...
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv~~~l~~P  560 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWP  560 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCE
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEEeCCCCCc
Confidence            654 445556788999999755433333333446789999997666665543  2678888886543 334433333345


Q ss_pred             EEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         200 SFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       200 ~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      ..|++++.+..|+.+.. .++|..+|.
T Consensus       561 ~GLavD~~~~~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          561 NGITLDLLSGRLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             eEEEEecCCCeEEEEeCCCCcEEEEec
Confidence            77999987777776654 457888775

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.28  E-value=0.00038  Score=55.76  Aligned_cols=195  Identities=13%  Similarity=0.149  Sum_probs=111.7

Q ss_pred             eEEEEECC-CCCEEEEEe-CCCcEEEeecCCCcEEEEEecc---cccEEEEEE-------CCCCCEEEEecCCC------
Q psy4391          30 VSSVKFSP-NGEWLASSS-ADKLIKIWGAYDGKFEKTISGH---KLGISDVAW-------SSDSRLLVSGSDDK------   91 (231)
Q Consensus        30 i~~~~~~~-~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~~g------   91 (231)
                      ...++|+| ++..|+.+. ..+.|++.|..++.....+...   ......++|       ++++++|+++...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            56889998 355555444 3467888888766655444332   224788999       99999666665543      


Q ss_pred             -cEEEEeCCC-ceee-----eeecCCCcceEEEEECCC-CCEEEEeecCCcEEEEECC-------CCce-----------
Q psy4391          92 -TLKIWELSS-GKCL-----KTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVR-------TGKC-----------  145 (231)
Q Consensus        92 -~i~~~d~~~-~~~~-----~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~-------~~~~-----------  145 (231)
                       .+.+++... +...     ..+.. ......++++|+ +.++++-..++.|..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             255665333 1211     12211 112335678895 5555566677889999987       4543           


Q ss_pred             eee-cc-CCCCCeEEEEEcCCCCeEEE-EecCCeEEEEeC--CCCcee--eeeecC-------C--------CCCeEEEE
Q psy4391         146 LKT-LP-AHSDPVSAVHFNRDGSLIVS-SSYDGLCRIWDT--ASGQCL--KTLIDD-------D--------NPPVSFVK  203 (231)
Q Consensus       146 ~~~-~~-~~~~~v~~~~~~~~~~~l~~-~~~dg~i~v~d~--~~~~~~--~~~~~~-------~--------~~~i~~~~  203 (231)
                      ... +. ........++|+|++++|+. -+....|+.++.  ..+...  ..+...       +        ..|-..++
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~  379 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF  379 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence            111 11 12234678999999996544 455678888654  333210  112111       0        11221345


Q ss_pred             EC-------CCCCEEEEEeCCCeEEEEeC
Q psy4391         204 FS-------PNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       204 ~s-------~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ..       ++|.++++=+..++|+.++.
T Consensus       380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~~  408 (496)
T 3kya_A          380 VKNPDYTGEEEYDFYFVDRLNFCVRKVTP  408 (496)
T ss_dssp             EECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred             EccccccccCCCeEEEEECCCCEEEEEeC
Confidence            54       56666666666789999884

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.26  E-value=0.00016  Score=59.53  Aligned_cols=186  Identities=10%  Similarity=0.027  Sum_probs=115.1

Q ss_pred             CCEEEEEeC-CCcEEEeec-CCCcEEEEEecccc-----------cEEEEEECCCCCE----EEEecCCCcEEEEeCCCc
Q psy4391          39 GEWLASSSA-DKLIKIWGA-YDGKFEKTISGHKL-----------GISDVAWSSDSRL----LVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        39 ~~~l~~~~~-dg~i~i~~~-~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~----l~~~~~~g~i~~~d~~~~  101 (231)
                      +..++.++. ++.|.-+|. .+++..-.......           ....++..|.+..    ++.++.++.+..+|.+++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            556667777 889999999 89987766543211           0122344344444    788888999999999999


Q ss_pred             eeeeeecCCCc----ceEE-EEECCCCCEEEEee------cCCcEEEEECCCCceeeeccCCCCC---------------
Q psy4391         102 KCLKTLKGHSN----YVFC-CNFNPQSNLIVSGS------FDESVRIWDVRTGKCLKTLPAHSDP---------------  155 (231)
Q Consensus       102 ~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~------~d~~i~v~d~~~~~~~~~~~~~~~~---------------  155 (231)
                      +.+-.......    .+.. ..+. ++ .++.++      .++.|+.+|.++|+.+..+......               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            87655432210    1110 0111 33 455554      3789999999999987665432110               


Q ss_pred             ----------------------e-EEEEEcCCCCeEEEEecC----------------CeEEEEeCCCCceeeeeecCCC
Q psy4391         156 ----------------------V-SAVHFNRDGSLIVSSSYD----------------GLCRIWDTASGQCLKTLIDDDN  196 (231)
Q Consensus       156 ----------------------v-~~~~~~~~~~~l~~~~~d----------------g~i~v~d~~~~~~~~~~~~~~~  196 (231)
                                            + ..+++.++...++.+..+                +.|..+|+.+++.+=.+.....
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                  0 134566777777776654                3789999999987654433211


Q ss_pred             ---------CCeEEEEEC-CCC---CEEEEEeCCCeEEEEeCCC
Q psy4391         197 ---------PPVSFVKFS-PNG---KYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       197 ---------~~i~~~~~s-~~g---~~l~~~s~d~~v~vwd~~~  227 (231)
                               .++. +... .+|   +.++.++.+|.+.++|...
T Consensus       300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~t  342 (599)
T 1w6s_A          300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTD  342 (599)
T ss_dssp             CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCC
Confidence                     2221 2222 567   5677788899999998643

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.22  E-value=0.0014  Score=54.34  Aligned_cols=194  Identities=7%  Similarity=0.020  Sum_probs=112.4

Q ss_pred             cceEEEEECCCCCEEEEEe-CCCcEEEeecCCCcE-EEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEeCCCceee
Q psy4391          28 KAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKF-EKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~~~~~~  104 (231)
                      .....++|++.+..|+.+. ..+.|..++...... ...+.........+++.+.++.|+ +-...+.|.+.+++.....
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            4577899998777666544 456788777754422 223333335678899998665554 4556789999998765433


Q ss_pred             eeecCCCcceEEEEECCCCCEEEEeec--CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCeEEEEe
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWD  181 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~v~d  181 (231)
                      ..+.........++++|.+..|+....  .+.|...++............-.....+++++++..|+.+ ...+.|..+|
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~  199 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  199 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence            333233344667889997666655543  4567777776433222222233457889999876666554 4567899999


Q ss_pred             CCCCceeeeeec-CCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeC
Q psy4391         182 TASGQCLKTLID-DDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       182 ~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~  225 (231)
                      +..... ..+.. ....+ ..+++.++  .|+.+. ..+.|...|.
T Consensus       200 ~dG~~~-~~~~~~~~~~P-~gi~~~~~--~ly~td~~~~~V~~~d~  241 (619)
T 3s94_A          200 LDGTNR-QAVVKGSLPHP-FALTLFED--ILYWTDWSTHSILACNK  241 (619)
T ss_dssp             SSCCEE-C---------C-CCEEESSS--EEEEECTTTCSEEEEES
T ss_pred             CCCCcc-EEEEeCCCCCc-eEEEEeCC--EEEEecCCCCEEEEEEC
Confidence            875432 22222 11122 24566555  444444 4567777775

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.16  E-value=0.00034  Score=58.43  Aligned_cols=187  Identities=11%  Similarity=0.065  Sum_probs=107.2

Q ss_pred             eEEEEECCCCCEEEEEeC-CCcEEEeecCCCcEEEEEeccccc-EEEEEECCCCCEEEEec-CC-----CcEEEEeCCCc
Q psy4391          30 VSSVKFSPNGEWLASSSA-DKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSRLLVSGS-DD-----KTLKIWELSSG  101 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-~~-----g~i~~~d~~~~  101 (231)
                      ..+.++..++++++.|+. +..+.+||..+.+....-.-...+ -..++..++++.++.|+ .+     ..+.+||..+.
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence            335677889999888874 457999998776554322111111 13445667888888887 33     46889998765


Q ss_pred             eeeee-------ec-C-------C----------Cc---------------------------------------ceEEE
Q psy4391         102 KCLKT-------LK-G-------H----------SN---------------------------------------YVFCC  117 (231)
Q Consensus       102 ~~~~~-------~~-~-------~----------~~---------------------------------------~v~~~  117 (231)
                      +....       +. .       .          .+                                       .-.++
T Consensus       325 ~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av  404 (656)
T 1k3i_A          325 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV  404 (656)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred             cceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence            43221       00 0       0          00                                       00111


Q ss_pred             EE-CCCCCEEEEeecCC-----------cEEEEECCCCceeeec--cCCCCC-eEEEEEcCCCCeEEEEecC--------
Q psy4391         118 NF-NPQSNLIVSGSFDE-----------SVRIWDVRTGKCLKTL--PAHSDP-VSAVHFNRDGSLIVSSSYD--------  174 (231)
Q Consensus       118 ~~-~~~~~~l~~~~~d~-----------~i~v~d~~~~~~~~~~--~~~~~~-v~~~~~~~~~~~l~~~~~d--------  174 (231)
                      .+ ..++++++.|+.++           .+.+||..+.......  ...... -.++...|++++++.|+.+        
T Consensus       405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~  484 (656)
T 1k3i_A          405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS  484 (656)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred             eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence            12 13567777777532           5777887766543322  111111 2344667899999998854        


Q ss_pred             ---CeEEEEeCCCCceeeeeecCC-CCCeEEEEECCCCCEEEEEeC
Q psy4391         175 ---GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       175 ---g~i~v~d~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~s~  216 (231)
                         ..+.+||..+.+....-.... ........+.|+|+.+++|+.
T Consensus       485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence               468899998765432111111 111233456799999999884

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.13  E-value=0.0025  Score=52.87  Aligned_cols=193  Identities=9%  Similarity=-0.013  Sum_probs=119.6

Q ss_pred             cceEEEEECCCCCEEEEE-eCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCceeee
Q psy4391          28 KAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      .....++|++.+..|+.+ ..++.|+.++.........+.........+++.+.+..| .+-...+.|.+.+++......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            357789999877766544 456788888876544444443333456678888765555 444556789999987644322


Q ss_pred             eecCCCcceEEEEECCCCCEEEEeec--CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCeEEEEeC
Q psy4391         106 TLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDT  182 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~v~d~  182 (231)
                      .+.........++++|....|+....  .+.|...++..... ..+...-.....+++++++..|+.+ ...+.|..+|+
T Consensus       117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            33233455788999986666655543  56788888764432 2222234567889999977666555 45678999998


Q ss_pred             CCCceeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeC
Q psy4391         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       183 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~  225 (231)
                      ..... ..+..... ....+++.. + .|+.+. ..+.|...|.
T Consensus       196 dG~~~-~v~~~~l~-~P~glav~~-~-~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          196 LGLNR-EVIADDLP-HPFGLTQYQ-D-YIYWTDWSRRSIERANK  235 (628)
T ss_dssp             TSCSC-EEEEECCS-CEEEEEEET-T-EEEEEETTTTEEEEEET
T ss_pred             CCCce-EEeeccCC-CceEEEEEC-C-EEEEecCCCCEEEEEEC
Confidence            76443 33322222 234566654 3 444444 4678887774

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=0.0005  Score=55.11  Aligned_cols=153  Identities=17%  Similarity=0.156  Sum_probs=93.5

Q ss_pred             EEEEEECC-CCCEEEEecC-CCcEEEEeCCCceeeeeecCC---CcceEEEEE-------CCCCCEEEEeecCC------
Q psy4391          72 ISDVAWSS-DSRLLVSGSD-DKTLKIWELSSGKCLKTLKGH---SNYVFCCNF-------NPQSNLIVSGSFDE------  133 (231)
Q Consensus        72 v~~~~~~~-~~~~l~~~~~-~g~i~~~d~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~d~------  133 (231)
                      ...|+|+| +...|+.+.. .+.|++.|++++.........   ......++|       ++++..|+.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            45789998 3444544444 467899999887765544332   234788999       99999666665543      


Q ss_pred             -cEEEEECCC-Ccee-----eeccCCCCCeEEEEEcCCC-CeEEEEecCCeEEEEeCC-------CCce-----------
Q psy4391         134 -SVRIWDVRT-GKCL-----KTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTA-------SGQC-----------  187 (231)
Q Consensus       134 -~i~v~d~~~-~~~~-----~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~v~d~~-------~~~~-----------  187 (231)
                       .+.+++... +...     ..+.... ....++++|++ .++++-..++.|..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             266666433 1211     1221112 23467889954 455566677889999987       4543           


Q ss_pred             eeeee-cCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeC
Q psy4391         188 LKTLI-DDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       188 ~~~~~-~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~  225 (231)
                      ...+. ......-..++|+|+|++|+.+. ..++|+.+|.
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence            11222 22223346799999999655554 5679998664

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.06  E-value=3.8e-05  Score=64.55  Aligned_cols=176  Identities=7%  Similarity=-0.020  Sum_probs=100.8

Q ss_pred             CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec-CCCcEEEEeCCC----ceeeeeecCCCcceEEEEECCC
Q psy4391          48 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS-DDKTLKIWELSS----GKCLKTLKGHSNYVFCCNFNPQ  122 (231)
Q Consensus        48 dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~g~i~~~d~~~----~~~~~~~~~~~~~v~~~~~~~~  122 (231)
                      .+.|+..+.........+.. ...+..++|++.+..|+.+. ..+.|+.+++.+    ......+.........+++++.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            35666667655444333322 23456789998776666554 457899999875    2222222222223445777754


Q ss_pred             -CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec-C-CeEEEEeCCCCceeeeeecCCCCCe
Q psy4391         123 -SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-D-GLCRIWDTASGQCLKTLIDDDNPPV  199 (231)
Q Consensus       123 -~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~v~d~~~~~~~~~~~~~~~~~i  199 (231)
                       ++++++-...+.|.++++........+.........++++|.+.+|+.+.. . +.|.++++.... ...+.......-
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~P  542 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWP  542 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCc
Confidence             455555556788999998755433333322344567889987665554433 2 678777765432 222222222223


Q ss_pred             EEEEECCCCCEEEEEe-CCCeEEEEeC
Q psy4391         200 SFVKFSPNGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       200 ~~~~~s~~g~~l~~~s-~d~~v~vwd~  225 (231)
                      ..|+|+|++..|+.+. ..++|.++|.
T Consensus       543 nGlavd~~~~~LY~aD~~~~~I~~~d~  569 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSKLHSISSIDV  569 (699)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred             cEEEEeccCCEEEEEecCCCeEEEEcc
Confidence            5689999876665554 4568988886

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.91  E-value=0.0013  Score=49.09  Aligned_cols=180  Identities=11%  Similarity=0.124  Sum_probs=93.5

Q ss_pred             CCCEEEEEeCC-----CcEEEeecCCCc---EEEEEe--cccccEEEEEECCCCCEEEEecCC-----CcEEEEeCCCce
Q psy4391          38 NGEWLASSSAD-----KLIKIWGAYDGK---FEKTIS--GHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSGK  102 (231)
Q Consensus        38 ~~~~l~~~~~d-----g~i~i~~~~~~~---~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~-----g~i~~~d~~~~~  102 (231)
                      +++.++.|+.+     ..+.+||..+..   ....-.  ........+..  +++.++.|+.+     ..+.+||+.+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            45666666654     358888887765   433321  11111222222  56666666643     358889988765


Q ss_pred             eeee--ecCCCcceEEEEECCCCCEEEEeecC-----CcEEEEECCCCceeee--ccCCCCCeEEEEEcCCCCeEEEEec
Q psy4391         103 CLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus       103 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                      ....  +.........+.+  ++.+++.|+.+     ..+..||+.+.+....  +........++.+  ++++++.|+.
T Consensus       140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~  215 (301)
T 2vpj_A          140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGF  215 (301)
T ss_dssp             EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCC
Confidence            3322  2211111112222  56777777754     4588999887654322  1111111122222  5677777776


Q ss_pred             C-----CeEEEEeCCCCceeeeeecCCC-CCeEEEEECCCCCEEEEEeCC-----CeEEEEeC
Q psy4391         174 D-----GLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLD-----NTLKLWDS  225 (231)
Q Consensus       174 d-----g~i~v~d~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~s~d-----~~v~vwd~  225 (231)
                      +     ..+.+||+.+.+....-..... .....+.  -+++.++.|+.+     +.+.+||.
T Consensus       216 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          216 DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             CSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEET
T ss_pred             CCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcC
Confidence            4     4688999988764332111111 1112222  266777777765     35777775

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.88  E-value=0.0076  Score=50.05  Aligned_cols=195  Identities=9%  Similarity=0.022  Sum_probs=114.3

Q ss_pred             cceEEEEECCCCCEEEEEe-CCCcEEEeecCCCcEEEEEec------ccccEEEEEECCCCCEEE-EecCCCcEEEEeCC
Q psy4391          28 KAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISG------HKLGISDVAWSSDSRLLV-SGSDDKTLKIWELS   99 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~   99 (231)
                      ..+.+++|.+....|+-+. ..+.|+.++.........+..      ....+..+++...++.|+ +-...+.|.+.+++
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            4577899988766665544 456787777654333333322      233578899998766664 55667889999987


Q ss_pred             CceeeeeecCCCcceEEEEECCC-CCEEEEeecCC--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe-cCC
Q psy4391         100 SGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDG  175 (231)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg  175 (231)
                      .......+.........++++|. |.++.+-....  .|...++............-.....+++++++..|+.+. ..+
T Consensus       420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~  499 (628)
T 4a0p_A          420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLR  499 (628)
T ss_dssp             SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCC
Confidence            54322223334456789999995 44444443333  577777763332222222234568899999877666554 457


Q ss_pred             eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeC
Q psy4391         176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~  225 (231)
                      .|..+++... ..+.+..........+++.. + .|+.+. ..+.|...|.
T Consensus       500 ~I~~~~~dG~-~r~~~~~~~~~~P~glav~~-~-~ly~tD~~~~~i~~~~k  547 (628)
T 4a0p_A          500 RIESSDLSGA-NRIVLEDSNILQPVGLTVFE-N-WLYWIDKQQQMIEKIDM  547 (628)
T ss_dssp             EEEEEETTSC-SCEEEECSSCSCEEEEEEET-T-EEEEEETTTTEEEEEET
T ss_pred             EEEEEeCCCC-ceEEEEcCCCCCcEEEEEEC-C-EEEEEECCCCeEEEEEC
Confidence            8999998543 33444322222334566554 3 344443 3456666654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.88  E-value=0.0018  Score=48.42  Aligned_cols=180  Identities=7%  Similarity=0.072  Sum_probs=93.2

Q ss_pred             CCCEEEEEeCC----CcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCC------CcEEEEeCCCceeee
Q psy4391          38 NGEWLASSSAD----KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD------KTLKIWELSSGKCLK  105 (231)
Q Consensus        38 ~~~~l~~~~~d----g~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~------g~i~~~d~~~~~~~~  105 (231)
                      +++.++.|+.+    ..+.+||..+.+....-.  ..........+  +++.++.|+.+      ..+.+||..+.+...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            45666666654    567888887766543322  11111222222  56666777654      358899988765332


Q ss_pred             e--ecCCCcceEEEEECCCCCEEEEeec---------CCcEEEEECCCCceeee--ccCCCCCeEEEEEcCCCCeEEEEe
Q psy4391         106 T--LKGHSNYVFCCNFNPQSNLIVSGSF---------DESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus       106 ~--~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      .  +.........+.  .++.+++.|+.         ...+.+||+.+.+-...  +......-..+.+  ++++++.|+
T Consensus       133 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG  208 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGG  208 (306)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             CCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeC
Confidence            2  111111111222  25667777654         34488999987753222  1111111122222  566777776


Q ss_pred             cC-----CeEEEEeCCCCceeeeeecCC-CCCeEEEEECCCCCEEEEEeCC-----CeEEEEeC
Q psy4391         173 YD-----GLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDS  225 (231)
Q Consensus       173 ~d-----g~i~v~d~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~s~d-----~~v~vwd~  225 (231)
                      .+     ..+.+||+.+.+....-.... ......+.+  +++.++.|+.+     +.+.+||.
T Consensus       209 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             EETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred             CCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence            54     368899998875432211111 111122223  66778888754     56788885

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.87  E-value=0.0013  Score=49.23  Aligned_cols=181  Identities=10%  Similarity=0.155  Sum_probs=92.0

Q ss_pred             CCCEEEEEeCCC-----cEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCCC-----cEEEEeCCCceeee
Q psy4391          38 NGEWLASSSADK-----LIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDK-----TLKIWELSSGKCLK  105 (231)
Q Consensus        38 ~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g-----~i~~~d~~~~~~~~  105 (231)
                      +++.++.|+.++     .+.+||..+.+....-.  ..........+  ++..++.|+.++     .+.+||+.+.+...
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            456666666543     57788877665443321  11111122222  566666776543     47788888765332


Q ss_pred             e--ecCCCcceEEEEECCCCCEEEEeecC-------CcEEEEECCCCceeee--ccCCCCCeEEEEEcCCCCeEEEEecC
Q psy4391         106 T--LKGHSNYVFCCNFNPQSNLIVSGSFD-------ESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus       106 ~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      .  +.........+.+  ++.+++.|+.+       ..+..||+.+.+-...  +.........+.+  ++++++.|+.+
T Consensus       139 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  214 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHD  214 (302)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBS
T ss_pred             cCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCC
Confidence            2  1111111112222  56677777643       3488999887653222  2111111122222  56777777764


Q ss_pred             -----CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeC
Q psy4391         175 -----GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-----TLKLWDS  225 (231)
Q Consensus       175 -----g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~-----~v~vwd~  225 (231)
                           ..+.+||+.+++....-.......-..++ .-+++.++.|+.++     .+.+||.
T Consensus       215 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             CCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcC
Confidence                 36889999887643321111111111122 23667777777553     5888885

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.85  E-value=0.0088  Score=49.60  Aligned_cols=157  Identities=6%  Similarity=0.000  Sum_probs=96.7

Q ss_pred             ceEEEEECCCCCEEEEEe-CCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCceeeee
Q psy4391          29 AVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKT  106 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~~~~~  106 (231)
                      .+.+++|.+.+..|+.+. ..+.|+.++.........+.........+++...+..| .+-...+.|.+.+++.......
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l  429 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKIL  429 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEE
Confidence            467788888655555443 46778888775544433443333456788888755544 4555678899999876543223


Q ss_pred             ecCCCcceEEEEECCCCCEEEEeec--CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCeEEEEeCC
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTA  183 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~v~d~~  183 (231)
                      +...-.....++++|....|+....  ...|...++............-.....+++++++..|+.+ +..+.|..+++.
T Consensus       430 ~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d  509 (619)
T 3s94_A          430 ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD  509 (619)
T ss_dssp             ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred             EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecC
Confidence            3333456788999997555554443  3567777775332222222223467889999876666655 445788889886


Q ss_pred             CC
Q psy4391         184 SG  185 (231)
Q Consensus       184 ~~  185 (231)
                      ..
T Consensus       510 G~  511 (619)
T 3s94_A          510 GT  511 (619)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.83  E-value=0.0058  Score=46.89  Aligned_cols=193  Identities=12%  Similarity=0.165  Sum_probs=110.2

Q ss_pred             ceEEEEECCCCCEEEEE------------eCCCcEEEeecCC--CcEEE-EEec-----ccccEEEEEECC--CCC-EEE
Q psy4391          29 AVSSVKFSPNGEWLASS------------SADKLIKIWGAYD--GKFEK-TISG-----HKLGISDVAWSS--DSR-LLV   85 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~------------~~dg~i~i~~~~~--~~~~~-~~~~-----~~~~v~~~~~~~--~~~-~l~   85 (231)
                      ..-.+...|+|..++++            ..+|.|.++|..+  .+... .+.+     .......+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34566778887766555            2689999999863  23221 2222     224567777755  343 343


Q ss_pred             Ee-cC--CCcEEEEeCCCc--e--eeeeecCC-CcceEEEEECCCCCEEEEee-----------------cCCcEEEEEC
Q psy4391          86 SG-SD--DKTLKIWELSSG--K--CLKTLKGH-SNYVFCCNFNPQSNLIVSGS-----------------FDESVRIWDV  140 (231)
Q Consensus        86 ~~-~~--~g~i~~~d~~~~--~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~v~d~  140 (231)
                      ++ ..  +..+.+|+++..  .  .+..+.+. -.....+.+.++|.+.++..                 ..+.|..+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            33 33  456777766532  2  22233322 24567888999998877654                 1244555554


Q ss_pred             CCCceeeeccCCCCCeEEEEEcCCCCeEEEEe-cCCeEEEEeCCC-Cceee-eeecCCCCCeEEEEECC-CCCEEEEEeC
Q psy4391         141 RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTAS-GQCLK-TLIDDDNPPVSFVKFSP-NGKYILAATL  216 (231)
Q Consensus       141 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~~~-~~~~~~~~~i~~~~~s~-~g~~l~~~s~  216 (231)
                        ++ +..+...-.....++|+||++.++.+. ..+.|..|++.. ++... .... .......+++++ +|.+.+++..
T Consensus       211 --~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          211 --ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             --TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEES
T ss_pred             --Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecC
Confidence              22 222222223567899999998877654 568999999863 33211 1221 123346788999 5998776654


Q ss_pred             C-CeEEEEeC
Q psy4391         217 D-NTLKLWDS  225 (231)
Q Consensus       217 d-~~v~vwd~  225 (231)
                      + ++|..||+
T Consensus       287 ~g~~v~~~~P  296 (355)
T 3sre_A          287 NGMRIFFYDA  296 (355)
T ss_dssp             CHHHHHSCCT
T ss_pred             CceEEEEECC
Confidence            4 35555544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.74  E-value=0.0073  Score=45.39  Aligned_cols=175  Identities=9%  Similarity=0.041  Sum_probs=86.0

Q ss_pred             CCCCCEEEEEeC-----C------CcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCC--------CcEE
Q psy4391          36 SPNGEWLASSSA-----D------KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD--------KTLK   94 (231)
Q Consensus        36 ~~~~~~l~~~~~-----d------g~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~--------g~i~   94 (231)
                      ..+++.++.|+.     .      ..+..||..+.+....-.  ..........+  ++..++.|+.+        ..+.
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~  120 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVM  120 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEE
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEE
Confidence            346777777763     1      126778877765533211  11111111222  45666666632        3588


Q ss_pred             EEeCCCceeeee--ecCCCcceEEEEECCCCCEEEEeec-C-----CcEEEEECCCCceeee--ccCCCCCeEEEEEcCC
Q psy4391          95 IWELSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSF-D-----ESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRD  164 (231)
Q Consensus        95 ~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~  164 (231)
                      +||..+.+-...  +.........+.  .++.+++.|+. +     ..+.+||+.+.+-...  +........++.+  +
T Consensus       121 ~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~  196 (315)
T 4asc_A          121 CYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--D  196 (315)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T
T ss_pred             EECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--C
Confidence            899987653221  111111111222  35667777776 2     3588999887653221  1111111122222  5


Q ss_pred             CCeEEEEecCC-----eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q psy4391         165 GSLIVSSSYDG-----LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (231)
Q Consensus       165 ~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d  217 (231)
                      +++++.|+.++     .+.+||+.+.+....-.......-..++ .-+++.++.|+.+
T Consensus       197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~  253 (315)
T 4asc_A          197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV-SLVGTLYAIGGFA  253 (315)
T ss_dssp             TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEE
T ss_pred             CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE-EECCEEEEECCcc
Confidence            67777777654     5888999887543321111111111122 2256777777753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.67  E-value=0.011  Score=45.42  Aligned_cols=100  Identities=13%  Similarity=0.187  Sum_probs=60.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEE--Ee---cccccEEEEEECCC---CCEEEEecC-C-----CcE
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--IS---GHKLGISDVAWSSD---SRLLVSGSD-D-----KTL   93 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--~~---~~~~~v~~~~~~~~---~~~l~~~~~-~-----g~i   93 (231)
                      ..-..++|.|+|+++++ ...|.|++++  ++.....  +.   ........++++|+   +..|+.+.. .     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            35679999999995554 6679999888  3432211  11   12346789999998   555544433 2     567


Q ss_pred             EEEeCCCce-----ee-eeec---CCCcceEEEEECCCCCEEEEee
Q psy4391          94 KIWELSSGK-----CL-KTLK---GHSNYVFCCNFNPQSNLIVSGS  130 (231)
Q Consensus        94 ~~~d~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~  130 (231)
                      ..++.....     .+ ..+.   ........+.|.|+|.+.++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            777776431     11 1122   1111234688999998777643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.62  E-value=0.0062  Score=45.49  Aligned_cols=178  Identities=12%  Similarity=0.152  Sum_probs=89.4

Q ss_pred             EEEEEeC--CCcEEEeecCCCcEEEEE--ecccccEEEEEECCCCCEEEEecCC----CcEEEEeCCCceeeee--ecCC
Q psy4391          41 WLASSSA--DKLIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSDD----KTLKIWELSSGKCLKT--LKGH  110 (231)
Q Consensus        41 ~l~~~~~--dg~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~----g~i~~~d~~~~~~~~~--~~~~  110 (231)
                      +++.|+.  ...+.+||..+.+....-  .........+.  .++..++.|+.+    ..+.+||..+.+....  +...
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            4455554  356788888776554321  11111112222  255666777654    5688899887653322  2111


Q ss_pred             CcceEEEEECCCCCEEEEeecC------CcEEEEECCCCceeee--ccCCCCCeEEEEEcCCCCeEEEEec---------
Q psy4391         111 SNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSY---------  173 (231)
Q Consensus       111 ~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~---------  173 (231)
                      ......+.+  ++.+++.|+.+      ..+.+||+.+.+....  +......-..+.  .++++++.|+.         
T Consensus        92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEE
T ss_pred             ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccc
Confidence            111122222  56777777765      4588999987653222  111111112222  25666666654         


Q ss_pred             CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeC
Q psy4391         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-----NTLKLWDS  225 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d-----~~v~vwd~  225 (231)
                      -..+.+||+.+.+....-.......-..+.. -+++.++.|+.+     ..+.+||.
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~  223 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDI  223 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEET
T ss_pred             cceEEEeCCCCCeEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeC
Confidence            3458899998876433211111111111222 256777776643     35777775

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.61  E-value=0.013  Score=44.76  Aligned_cols=143  Identities=14%  Similarity=0.253  Sum_probs=94.0

Q ss_pred             CCcEEEeecC--CCcEEEEEec------cc-ccEEEEEE--CCC-CC-EEEEecCCCcEEEEeCC-------Cceeeeee
Q psy4391          48 DKLIKIWGAY--DGKFEKTISG------HK-LGISDVAW--SSD-SR-LLVSGSDDKTLKIWELS-------SGKCLKTL  107 (231)
Q Consensus        48 dg~i~i~~~~--~~~~~~~~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~~g~i~~~d~~-------~~~~~~~~  107 (231)
                      +++|.+|++.  ++. ...+..      .. ..+..+++  +|. ++ ++++...+|.+..|++.       +.+.++.+
T Consensus        98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A           98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            4789999663  333 344421      11 34555677  674 43 57778888999998883       33556666


Q ss_pred             cCCCcceEEEEECCCCCEEEEeecCCcEEEEECC-----CCceeeecc-CC-CCCeEEEEE--cCCCC-eEEEEe-cCCe
Q psy4391         108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR-----TGKCLKTLP-AH-SDPVSAVHF--NRDGS-LIVSSS-YDGL  176 (231)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~-----~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~l~~~~-~dg~  176 (231)
                      .. .+.+..|..++....|+.+-++..|..++.+     +++.+..+. .+ ...+..|++  .++++ +|++.+ .+..
T Consensus       177 ~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          177 KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            64 3567788999999999999998878888865     234444432 11 235777877  45555 666655 4679


Q ss_pred             EEEEeCC-CCceeeeee
Q psy4391         177 CRIWDTA-SGQCLKTLI  192 (231)
Q Consensus       177 i~v~d~~-~~~~~~~~~  192 (231)
                      +.+||.. +.+.+..+.
T Consensus       256 ~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          256 YAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEESSTTCCEEEEEE
T ss_pred             EEEEECCCCCcEEEEEE
Confidence            9999996 666666653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.60  E-value=0.0041  Score=46.36  Aligned_cols=180  Identities=12%  Similarity=0.204  Sum_probs=91.0

Q ss_pred             CCCEEEEEe-CC-----CcEEEeecCCCcEEEEE--ecccccEEEEEECCCCCEEEEecCC-----CcEEEEeCCCce--
Q psy4391          38 NGEWLASSS-AD-----KLIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSGK--  102 (231)
Q Consensus        38 ~~~~l~~~~-~d-----g~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~-----g~i~~~d~~~~~--  102 (231)
                      ++..++.|+ .+     ..+.+||..+.+....-  .........+.  .++..++.|+.+     ..+.+||..+.+  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            344555555 22     36788888766543321  11111111222  346666777654     368899988755  


Q ss_pred             -eee--eecCCCcceEEEEECCCCCEEEEeecCC-----cEEEEECCCCceee--eccCCCCCeEEEEEcCCCCeEEEEe
Q psy4391         103 -CLK--TLKGHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus       103 -~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                       ...  .+.........+.+  ++.+++.|+.++     .+.+||+.+.+...  .+........++.+  ++++++.|+
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  167 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG  167 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence             222  12111111122222  567777776543     58889988765322  22211111122222  567777776


Q ss_pred             cC-----CeEEEEeCCCCceeeeeecCCCC-CeEEEEECCCCCEEEEEeCC-----CeEEEEeC
Q psy4391         173 YD-----GLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLD-----NTLKLWDS  225 (231)
Q Consensus       173 ~d-----g~i~v~d~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~s~d-----~~v~vwd~  225 (231)
                      .+     ..+.+||+.+.+....-...... ....+.  -+++.++.|+.+     +.+.+||.
T Consensus       168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~  229 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNI  229 (301)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeC
Confidence            54     46889999887643321111111 112222  256777777754     46788885

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.57  E-value=0.014  Score=44.24  Aligned_cols=184  Identities=13%  Similarity=0.076  Sum_probs=96.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe---cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee-
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC-  103 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~-  103 (231)
                      ..+.++.+.+ +..++ ++..|.|.. ....++.-..+.   .....+..+.+.+++..++++ .++.|.. ..+.++. 
T Consensus        80 ~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW  154 (327)
T 2xbg_A           80 YRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNW  154 (327)
T ss_dssp             CEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSE
T ss_pred             ccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCC
Confidence            3577888875 44444 445564443 222232212221   112346667776666656555 4554432 1222221 


Q ss_pred             eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEEC--CCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV--RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      ..........+..+.+.+++.+++.+...+..+-.|-  .+.+.+.  ......+..+.+.+++..++ ++.+|.+.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~  231 (327)
T 2xbg_A          155 QALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSD  231 (327)
T ss_dssp             EEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEE
T ss_pred             EEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEec
Confidence            1122233446778889998888776654333333442  2222221  22345788899999887654 45678777764


Q ss_pred             CCCCceeeeeecC---CCCCeEEEEECCCCCEEEEEeCCCeE
Q psy4391         182 TASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTL  220 (231)
Q Consensus       182 ~~~~~~~~~~~~~---~~~~i~~~~~s~~g~~l~~~s~d~~v  220 (231)
                      ...++....+...   ....+..+++.+++..++++. +|.|
T Consensus       232 ~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          232 PDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL  272 (327)
T ss_dssp             TTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred             CCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence            3334433332211   123477888998887766655 6655

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.56  E-value=0.0071  Score=45.09  Aligned_cols=178  Identities=10%  Similarity=0.182  Sum_probs=88.4

Q ss_pred             CEEEEEeCC----CcEEEeecCCCcEEEEE--ecccccEEEEEECCCCCEEEEecCC-----CcEEEEeCCCceeeee--
Q psy4391          40 EWLASSSAD----KLIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSGKCLKT--  106 (231)
Q Consensus        40 ~~l~~~~~d----g~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~-----g~i~~~d~~~~~~~~~--  106 (231)
                      ..++.|+.+    ..+..||..+......-  .........+.  .++..++.|+.+     ..+.+||..+.+....  
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            344555533    35778887766543321  11111111122  256666777654     3588899887653322  


Q ss_pred             ecCCCcceEEEEECCCCCEEEEeecCC-----cEEEEECCCCceeee--ccCCCCCeEEEEEcCCCCeEEEEecC-----
Q psy4391         107 LKGHSNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYD-----  174 (231)
Q Consensus       107 ~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----  174 (231)
                      +.........+.+  ++.+++.|+.++     .+.+||+.+.+....  +........++.+  ++++++.|+.+     
T Consensus        95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~  170 (302)
T 2xn4_A           95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQ  170 (302)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTE
T ss_pred             CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCc
Confidence            1111111122222  567777777653     477889887653222  1111111122222  56666666643     


Q ss_pred             --CeEEEEeCCCCceeeeeecCCCC-CeEEEEECCCCCEEEEEeCC-----CeEEEEeC
Q psy4391         175 --GLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLD-----NTLKLWDS  225 (231)
Q Consensus       175 --g~i~v~d~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~s~d-----~~v~vwd~  225 (231)
                        ..+.+||+.+.+....-...... ....+.  -+++.++.|+.+     +.+.+||.
T Consensus       171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~  227 (302)
T 2xn4_A          171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDP  227 (302)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEET
T ss_pred             cccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeC
Confidence              35889999887643321111111 112222  256777777654     36778875

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.52  E-value=0.011  Score=41.89  Aligned_cols=143  Identities=11%  Similarity=-0.005  Sum_probs=82.8

Q ss_pred             ccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee------eeeecC-CCcceEEEEECCCCCEEEEeecCCcEEEEECCC
Q psy4391          70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC------LKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT  142 (231)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  142 (231)
                      ..+..++|+|+|.+.++  .+|.++-.+..+...      -..+-. .-....++.|+|+|.+.++  .||.|+-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            35678999998886555  777777666644111      112210 1112457889999998888  569888777543


Q ss_pred             Ccee-------eeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce-----eeeeec-CCCCCeEEEEECCCCC
Q psy4391         143 GKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----LKTLID-DDNPPVSFVKFSPNGK  209 (231)
Q Consensus       143 ~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-----~~~~~~-~~~~~i~~~~~s~~g~  209 (231)
                      ...-       +.-...-..+..+.+.|+|.+.++.  |+.+.-.....+..     ...... ..-.....+.|.++|.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            2111       1111112357889999999977766  77765443332210     011111 2222345577999998


Q ss_pred             EEEEEeCCCeE
Q psy4391         210 YILAATLDNTL  220 (231)
Q Consensus       210 ~l~~~s~d~~v  220 (231)
                      ..++.  ++++
T Consensus       195 l~~v~--~g~~  203 (236)
T 1tl2_A          195 LFGVQ--GGKF  203 (236)
T ss_dssp             EEEEE--TTEE
T ss_pred             EEEEe--CCeE
Confidence            77666  6643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.51  E-value=0.015  Score=43.72  Aligned_cols=175  Identities=7%  Similarity=0.048  Sum_probs=83.4

Q ss_pred             CCCCCEEEEEeC----CC-------cEEEeecCCCcEEEEE--ecccccEEEEEECCCCCEEEEecCC-------CcEEE
Q psy4391          36 SPNGEWLASSSA----DK-------LIKIWGAYDGKFEKTI--SGHKLGISDVAWSSDSRLLVSGSDD-------KTLKI   95 (231)
Q Consensus        36 ~~~~~~l~~~~~----dg-------~i~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~~-------g~i~~   95 (231)
                      ..+++.++.|+.    ++       .+..||..+.+....-  ...........+  +++.++.|+.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence            346677777763    12       1667787666543321  111111122222  45666666643       24778


Q ss_pred             EeCCCceeeee--ecCCCcceEEEEECCCCCEEEEeec------CCcEEEEECCCCceeee--ccCCCCCeEEEEEcCCC
Q psy4391          96 WELSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSF------DESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDG  165 (231)
Q Consensus        96 ~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~  165 (231)
                      ||..+.+-...  +......-..+.  .++.+++.|+.      -..+.+||+.+.+-...  +........++.+  ++
T Consensus       132 yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~  207 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KG  207 (318)
T ss_dssp             EETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred             EeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CC
Confidence            89887654322  111111111111  35667777764      23588999987653222  1111111122222  56


Q ss_pred             CeEEEEecC-----CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q psy4391         166 SLIVSSSYD-----GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (231)
Q Consensus       166 ~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d  217 (231)
                      ++++.|+.+     ..+.+||+.+.+....-.......-..+. .-+++.++.|+.+
T Consensus       208 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~  263 (318)
T 2woz_A          208 KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSLYAIGGFA  263 (318)
T ss_dssp             EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEEEEECCBC
T ss_pred             EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEEEEECCee
Confidence            777777643     35778999877643221111111111122 2356777777653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.51  E-value=0.0049  Score=46.19  Aligned_cols=181  Identities=10%  Similarity=0.137  Sum_probs=91.9

Q ss_pred             CCCEEEEEeC----C-----CcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCC-----CcEEEEeCCCc
Q psy4391          38 NGEWLASSSA----D-----KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDD-----KTLKIWELSSG  101 (231)
Q Consensus        38 ~~~~l~~~~~----d-----g~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~-----g~i~~~d~~~~  101 (231)
                      ++++++.|+.    +     ..+.+||..+.+....-.  ..........+  +++.++.|+.+     ..+.+||..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4566666654    2     357788877665433211  11111222222  56666666543     36888998876


Q ss_pred             eeeee--ecCCCcceEEEEECCCCCEEEEeecC-----CcEEEEECCCCceeee--ccCCCCCeEEEEEcCCCCeEEEEe
Q psy4391         102 KCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus       102 ~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      +....  +.........+.+  ++.+++.|+.+     ..+..||+.+.+-...  +........++.+  ++++++.|+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  223 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGG  223 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeC
Confidence            53322  1111111122222  56777777654     4588999887653221  1111111122222  567777776


Q ss_pred             cC-----CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeC
Q psy4391         173 YD-----GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-----NTLKLWDS  225 (231)
Q Consensus       173 ~d-----g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d-----~~v~vwd~  225 (231)
                      .+     ..+.+||+.+.+....-.......-..++. -+++.++.|+.+     ..+.+||.
T Consensus       224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEET
T ss_pred             CCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcC
Confidence            64     468899998876433211111111111222 256777777643     46778875

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.50  E-value=0.006  Score=45.69  Aligned_cols=180  Identities=9%  Similarity=0.109  Sum_probs=91.5

Q ss_pred             CCCEEEEEeCC----CcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecC----C-----CcEEEEeCCCce
Q psy4391          38 NGEWLASSSAD----KLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSD----D-----KTLKIWELSSGK  102 (231)
Q Consensus        38 ~~~~l~~~~~d----g~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~----~-----g~i~~~d~~~~~  102 (231)
                      ++..++.|+.+    ..+.+||..+.+....-.  ........+.  .++..++.|+.    +     ..+.+||..+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            45666666632    367888887765543211  1111111122  25566666665    2     368889988765


Q ss_pred             eeee--ecCCCcceEEEEECCCCCEEEEeecC-----CcEEEEECCCCceeee--ccCCCCCeEEEEEcCCCCeEEEEec
Q psy4391         103 CLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus       103 ~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                      ....  +.........+.+  ++.+++.|+.+     ..+.+||+.+.+....  +......-.++.+  ++++++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence            3322  1111111122222  56777777643     3588899887653222  1111111122222  5677777765


Q ss_pred             C-----CeEEEEeCCCCceeeeeecCCCC-CeEEEEECCCCCEEEEEeCC-----CeEEEEeC
Q psy4391         174 D-----GLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLD-----NTLKLWDS  225 (231)
Q Consensus       174 d-----g~i~v~d~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~s~d-----~~v~vwd~  225 (231)
                      +     ..+.+||+.+.+....-...... .-..+.+  +++.++.|+.+     ..+.+||.
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  238 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDV  238 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeC
Confidence            4     45889999877643221111111 1122222  56777777654     46888885

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.41  E-value=0.017  Score=41.09  Aligned_cols=143  Identities=13%  Similarity=0.045  Sum_probs=82.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcE------EEEEe-cccccEEEEEECCCCCEEEEecCCCcEEEEeCCC
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF------EKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS  100 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~------~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~  100 (231)
                      ..+..++|+|+|.+.++  .+|.+.-.+..+...      ...+- ..-.....+.|.|+|.+.++  .||.|+-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            46789999999997666  677776666533111      11221 01112467889999987776  568888777643


Q ss_pred             ceee------eee-cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce------eeecc-CCCCCeEEEEEcCCCC
Q psy4391         101 GKCL------KTL-KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC------LKTLP-AHSDPVSAVHFNRDGS  166 (231)
Q Consensus       101 ~~~~------~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------~~~~~-~~~~~v~~~~~~~~~~  166 (231)
                      ....      ..+ ...=..+..+.+.|+|.+.+..  ++.++-....++..      ...+. ..-...+.+.|.+++.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            2110      111 1122457889999999988877  67654332222111      01111 1122345567888887


Q ss_pred             eEEEEecCCeEE
Q psy4391         167 LIVSSSYDGLCR  178 (231)
Q Consensus       167 ~l~~~~~dg~i~  178 (231)
                      +.++.  +|.+.
T Consensus       195 l~~v~--~g~~Y  204 (236)
T 1tl2_A          195 LFGVQ--GGKFY  204 (236)
T ss_dssp             EEEEE--TTEEE
T ss_pred             EEEEe--CCeEE
Confidence            76655  66544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.40  E-value=0.026  Score=43.27  Aligned_cols=182  Identities=13%  Similarity=0.121  Sum_probs=94.3

Q ss_pred             cceEEEEECCC---CCEEEEEeC-C-----CcEEEeecCCCcE---EEE---Ee---cccccEEEEEECCCCCEEEEecC
Q psy4391          28 KAVSSVKFSPN---GEWLASSSA-D-----KLIKIWGAYDGKF---EKT---IS---GHKLGISDVAWSSDSRLLVSGSD   89 (231)
Q Consensus        28 ~~i~~~~~~~~---~~~l~~~~~-d-----g~i~i~~~~~~~~---~~~---~~---~~~~~v~~~~~~~~~~~l~~~~~   89 (231)
                      .....++++|+   +..|+.+.. .     +.|..++......   ...   +.   ........++|.|+|..+++.+.
T Consensus        75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~  154 (352)
T 2ism_A           75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGE  154 (352)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCC
T ss_pred             CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECC
Confidence            46788999998   555554332 2     5677777654321   111   22   11112357899999976665432


Q ss_pred             C-------------CcEEEEeCCCc------------eeeeee-cCCCcceEEEEECC-CCCEEEEeecCCc--------
Q psy4391          90 D-------------KTLKIWELSSG------------KCLKTL-KGHSNYVFCCNFNP-QSNLIVSGSFDES--------  134 (231)
Q Consensus        90 ~-------------g~i~~~d~~~~------------~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~--------  134 (231)
                      .             |.|.-++.+..            .....+ .++ .....++|+| ++.++++-.....        
T Consensus       155 ~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~de  233 (352)
T 2ism_A          155 VYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDE  233 (352)
T ss_dssp             TTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCE
T ss_pred             CCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeE
Confidence            1             45555555430            000111 112 2245678999 5666655443333        


Q ss_pred             EEEEECCCCc------------------eeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce------eee
Q psy4391         135 VRIWDVRTGK------------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC------LKT  190 (231)
Q Consensus       135 i~v~d~~~~~------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------~~~  190 (231)
                      |.+.  ..+.                  .+..+.. ......++| .+|.++++....+.|...++.....      ...
T Consensus       234 i~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~~-~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~  309 (352)
T 2ism_A          234 VNLI--VPGGNYGWPRVVGRGNDPRYRDPLYFWPQ-GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVET  309 (352)
T ss_dssp             EEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECTT-CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEe--ccCCcCCCCcccCCCCCCCCcCCeEecCC-CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchhe
Confidence            3332  2221                  1111111 224556777 4666666665667787777654321      122


Q ss_pred             eecCCCCCeEEEEECCCCCEEEEEe
Q psy4391         191 LIDDDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       191 ~~~~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                      +.. ....+..+++.|||.++++..
T Consensus       310 ~~~-~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          310 ALS-GFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEE-SSCCEEEEEECTTSCEEEEEC
T ss_pred             ecc-cCCCeeEEEECCCCcEEEEEe
Confidence            322 224567899999998766654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.28  E-value=0.023  Score=42.61  Aligned_cols=162  Identities=6%  Similarity=-0.026  Sum_probs=89.1

Q ss_pred             EEECCCCCEEEEEeCC--------------CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec--C--CCcEE
Q psy4391          33 VKFSPNGEWLASSSAD--------------KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS--D--DKTLK   94 (231)
Q Consensus        33 ~~~~~~~~~l~~~~~d--------------g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~g~i~   94 (231)
                      --++++|++|+-+...              ..|+..+....... .+....    ...|+++++.|+-..  .  ...|.
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDPDP----CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEECSC----EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-EeecCC----ccEEEEeCCEEEEEeecCCCCceEE
Confidence            3467889988765432              35666666544432 232211    226778888888765  3  34555


Q ss_pred             EEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeec-CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec
Q psy4391          95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus        95 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                      ..++...... .+..+..    ..++++++.|+-.+. ...|.+.++..+... .+..  +... ..+.|++.+|+-...
T Consensus       133 ~~~~dGs~~~-~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~~--~~~~-~~~~P~g~~iy~t~~  203 (302)
T 3s25_A          133 RIRIDGEEKK-KIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LFYD--CNCY-KPVVLDDTNVYYMDV  203 (302)
T ss_dssp             EEETTSCCCE-EEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EEEC--SCEE-EEEEEETTEEEEEEG
T ss_pred             EEECCCCCeE-EEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EEeC--CCcc-ceeeecCCEEEEEEc
Confidence            5566543333 3332222    345677777775554 677888898766533 3322  2232 345688888876654


Q ss_pred             C--CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEE
Q psy4391         174 D--GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA  214 (231)
Q Consensus       174 d--g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  214 (231)
                      +  ..|..-++.... ...+..   ..+  ..++|+|++|+.+
T Consensus       204 ~~~~~I~~~~ldG~~-~~~Lt~---~~~--~~~~~~g~~Iy~~  240 (302)
T 3s25_A          204 NRDNAIVHVNINNPN-PVVLTE---ANI--EHYNVYGSLIFYQ  240 (302)
T ss_dssp             GGTTEEEEECSSSCC-CEECSC---SCE--EEEEEETTEEEEE
T ss_pred             CCCcEEEEEECCCCC-eEEEeC---CCc--ceEEECCCEEEEE
Confidence            3  366666776544 222221   122  2356666666654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.25  E-value=0.046  Score=42.83  Aligned_cols=145  Identities=17%  Similarity=0.191  Sum_probs=93.4

Q ss_pred             ECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecc----cccEEEEEECCCCCEEEEecCCCcEEEEeCCCce--------
Q psy4391          35 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH----KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK--------  102 (231)
Q Consensus        35 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~--------  102 (231)
                      ...+|..++.+. ++.||.-++.+....+.+...    ...+..+..+|+|+++|..+ +..|.+..+..+.        
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~  105 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSI  105 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHH
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccc
Confidence            345666666543 567777676533333344332    22577799999999988775 5588888876321        


Q ss_pred             ----eeeeecC------CCcceEEEEECCC---CCEEEEeecCCcEEEEECCCCceee-ec---------cCCCCCeEEE
Q psy4391         103 ----CLKTLKG------HSNYVFCCNFNPQ---SNLIVSGSFDESVRIWDVRTGKCLK-TL---------PAHSDPVSAV  159 (231)
Q Consensus       103 ----~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~d~~i~v~d~~~~~~~~-~~---------~~~~~~v~~~  159 (231)
                          ..+.+.-      ....|..+.|+|-   +..|++-..|+.|++||+....... .+         ......+.++
T Consensus       106 ~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          106 QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEE
T ss_pred             ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEE
Confidence                0111111      2466899999995   4678899999999999998632110 11         1122467899


Q ss_pred             EEcCCCCeEEEEe--cCCeEEEEe
Q psy4391         160 HFNRDGSLIVSSS--YDGLCRIWD  181 (231)
Q Consensus       160 ~~~~~~~~l~~~~--~dg~i~v~d  181 (231)
                      +|..++-.|+..+  .+|.|+-..
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEEEEES
T ss_pred             EEcCCCcEEEEEecCCCCCEEEEC
Confidence            9999887777744  788886543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.23  E-value=0.042  Score=42.14  Aligned_cols=153  Identities=12%  Similarity=0.186  Sum_probs=86.8

Q ss_pred             ccEEEEEECCCCCEEEEe------------cCCCcEEEEeCCCc--eee-eeecC-----CCcceEEEEECC--CCC-EE
Q psy4391          70 LGISDVAWSSDSRLLVSG------------SDDKTLKIWELSSG--KCL-KTLKG-----HSNYVFCCNFNP--QSN-LI  126 (231)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~------------~~~g~i~~~d~~~~--~~~-~~~~~-----~~~~v~~~~~~~--~~~-~l  126 (231)
                      .+..+++..|+|..++++            ..+|.|.++|.++.  +.. ..+.+     ..-....+.+.+  +++ .|
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            355677778877655554            26899999998742  211 12222     112445566544  343 34


Q ss_pred             EEe-ec--CCcEEEEECCCCc-e---eeeccCC-CCCeEEEEEcCCCCeEEEEe-----------------cCCeEEEEe
Q psy4391         127 VSG-SF--DESVRIWDVRTGK-C---LKTLPAH-SDPVSAVHFNRDGSLIVSSS-----------------YDGLCRIWD  181 (231)
Q Consensus       127 ~~~-~~--d~~i~v~d~~~~~-~---~~~~~~~-~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~v~d  181 (231)
                      +.+ ..  +..+.+|++..+. .   +..+... -.....+.+.++|.++++..                 ..|.+..+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            333 22  4567787765432 1   2222211 23567899999998777654                 124565566


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSY  226 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~  226 (231)
                      ..  + ...+.. .-..-+.++|+|||+.|+++. ..++|..||..
T Consensus       210 ~~--~-~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          210 PN--D-VRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             TT--C-CEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             CC--e-EEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            53  2 222222 122347899999998887765 46799999853

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.20  E-value=0.046  Score=41.93  Aligned_cols=143  Identities=12%  Similarity=0.058  Sum_probs=76.7

Q ss_pred             cccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee---eee----cCCCcceEEEEECCC---CCEEEEe-ec------
Q psy4391          69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL---KTL----KGHSNYVFCCNFNPQ---SNLIVSG-SF------  131 (231)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~---~~~----~~~~~~v~~~~~~~~---~~~l~~~-~~------  131 (231)
                      ......++|.|+|+.++++...|.|++++... ...   ..+    .........++++|+   +..|+.. ..      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            34568899999998344555679999998543 221   111    112234678999995   4444443 22      


Q ss_pred             -CCcEEEEECCCC--c--ee----eeccC---CCCCeEEEEEcCCCCeEEEEec-------------CCeEEEEeCCCCc
Q psy4391         132 -DESVRIWDVRTG--K--CL----KTLPA---HSDPVSAVHFNRDGSLIVSSSY-------------DGLCRIWDTASGQ  186 (231)
Q Consensus       132 -d~~i~v~d~~~~--~--~~----~~~~~---~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~v~d~~~~~  186 (231)
                       ...|..+++..+  .  ..    ..+..   .......++|.|||.++++.+.             .|.|.-++....-
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence             235666666432  1  11    11111   1122356999999976665433             2466666665320


Q ss_pred             ------------eeeeeecCCCCCeEEEEECC-CCCEEEE
Q psy4391         187 ------------CLKTLIDDDNPPVSFVKFSP-NGKYILA  213 (231)
Q Consensus       187 ------------~~~~~~~~~~~~i~~~~~s~-~g~~l~~  213 (231)
                                  ....+.... .....++|+| +|+++++
T Consensus       176 p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence                        111111111 2245689999 5655444

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.19  E-value=0.047  Score=41.90  Aligned_cols=143  Identities=13%  Similarity=0.077  Sum_probs=78.5

Q ss_pred             cccEEEEEECCCCCEEEEecCCCcEEEEeCCCce-eeeeec---CCCcceEEEEECCC---CCEEEEeec----C----C
Q psy4391          69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK-CLKTLK---GHSNYVFCCNFNPQ---SNLIVSGSF----D----E  133 (231)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----~  133 (231)
                      ......++|.|+|++ +++..+|.|++++. +++ .+..+.   ........++++|+   +..|+....    +    .
T Consensus        28 l~~P~~ia~~pdG~l-~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRY-LVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEE-EEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeE-EEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            345778999999984 45556699998874 343 222211   12345778999997   444444332    3    5


Q ss_pred             cEEEEECCCC--c-----ee-eeccC-CCCCeEEEEEcCCCCeEEEEec-------------CCeEEEEeCCCCc-----
Q psy4391         134 SVRIWDVRTG--K-----CL-KTLPA-HSDPVSAVHFNRDGSLIVSSSY-------------DGLCRIWDTASGQ-----  186 (231)
Q Consensus       134 ~i~v~d~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~v~d~~~~~-----  186 (231)
                      .|..|+...+  .     .+ ..+.. .......++|.|||.++++.+.             .|.|.-++....-     
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777776543  1     11 11221 1123456899999987766432             2456666654220     


Q ss_pred             --eeeeeecCCCCCeEEEEECC-CCCEEEEE
Q psy4391         187 --CLKTLIDDDNPPVSFVKFSP-NGKYILAA  214 (231)
Q Consensus       187 --~~~~~~~~~~~~i~~~~~s~-~g~~l~~~  214 (231)
                        ....+...... ...++|+| +|+++++-
T Consensus       186 f~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          186 FPNSPIWSYGHRN-PQGIDWHRASGVMVATE  215 (354)
T ss_dssp             STTCCEEEECCSC-CCEEEECTTTCCEEEEE
T ss_pred             CCCCcEEEEccCC-cceEEEeCCCCCEEEEe
Confidence              01111112222 24689999 66655543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.0014  Score=49.96  Aligned_cols=142  Identities=11%  Similarity=0.055  Sum_probs=82.4

Q ss_pred             CEEEEEeCCCcEEEeecCCCcEEEEEeccc-ccEEEEEE--CC-CCCEEEEe-cCCCcEEEEeCCCceeeeeecC----C
Q psy4391          40 EWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAW--SS-DSRLLVSG-SDDKTLKIWELSSGKCLKTLKG----H  110 (231)
Q Consensus        40 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~-~~v~~~~~--~~-~~~~l~~~-~~~g~i~~~d~~~~~~~~~~~~----~  110 (231)
                      ..++.++.||.|.-+|..+++....+.... .++....-  .+ ++..++.. ..||.|..++..++.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            467888999999999999998888776541 22222110  01 22333333 5899999999888754433221    1


Q ss_pred             CcceEE---EEE-C----CCCCEEEEeecCCcEEEEECCCCceeeeccCCC--CC-----eEEEEEc-----CCCCeEEE
Q psy4391         111 SNYVFC---CNF-N----PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHS--DP-----VSAVHFN-----RDGSLIVS  170 (231)
Q Consensus       111 ~~~v~~---~~~-~----~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~~-----v~~~~~~-----~~~~~l~~  170 (231)
                      .+++..   ..+ .    ..+..+++|+.++++...|+++|+.+..+....  +.     ..|....     ..+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            111211   000 0    145678899999999999999999988876432  10     0111110     12345666


Q ss_pred             EecCCeEEEEe
Q psy4391         171 SSYDGLCRIWD  181 (231)
Q Consensus       171 ~~~dg~i~v~d  181 (231)
                      +..+..+.+.+
T Consensus       171 g~~~y~v~~~~  181 (339)
T 2be1_A          171 GKTIFELGIHS  181 (339)
T ss_dssp             EEEEEECEECC
T ss_pred             ecceEEEEEEC
Confidence            66666666655

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.14  E-value=0.044  Score=41.07  Aligned_cols=163  Identities=11%  Similarity=0.015  Sum_probs=92.6

Q ss_pred             ECCCCCEEEEEeC--CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC--------------CcEEEEeC
Q psy4391          35 FSPNGEWLASSSA--DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD--------------KTLKIWEL   98 (231)
Q Consensus        35 ~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--------------g~i~~~d~   98 (231)
                      |+++|.+|+....  ++.|...+.... ....+....  +  --+++++..|+.+...              ..|+..++
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~-~~~~l~~~~--~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGS-NIHKLSNDT--A--MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSC-SCEEEEEEE--E--EEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCC-CCEEccCCc--e--eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            3457777766542  455655555333 333443221  2  3457888888766543              35777777


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEEee----cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec-
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS----FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-  173 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  173 (231)
                      +..+....... .    ...++++++.|+-..    .+..|+..++.... ...+..+..    .+++++++.|+-.+. 
T Consensus        96 dg~~~~~l~~~-~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g  165 (302)
T 3s25_A           96 NGHGSTVLDPD-P----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPK  165 (302)
T ss_dssp             TSCCCEEEECS-C----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTT
T ss_pred             CCCcceEeecC-C----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCC
Confidence            76553332221 1    225677888888765    34457777776433 334433322    346778888876654 


Q ss_pred             CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC
Q psy4391         174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD  217 (231)
Q Consensus       174 dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d  217 (231)
                      ...|.+.++..+... .+.. .  ... ..++|++.+|+....+
T Consensus       166 ~~~Iy~~~l~g~~~~-~l~~-~--~~~-~~~~P~g~~iy~t~~~  204 (302)
T 3s25_A          166 NGQLYRYDTASQSEA-LFYD-C--NCY-KPVVLDDTNVYYMDVN  204 (302)
T ss_dssp             TCCEEEEETTTTEEE-EEEC-S--CEE-EEEEEETTEEEEEEGG
T ss_pred             CceEEEEECCCCCEE-EEeC-C--Ccc-ceeeecCCEEEEEEcC
Confidence            568888888766533 3322 1  222 3456888888876654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.94  E-value=0.12  Score=43.60  Aligned_cols=189  Identities=12%  Similarity=0.108  Sum_probs=100.1

Q ss_pred             CCCCEEEEEeCC----CcEEEeecCCCcEEEEE-e-------cccccEEEEEECCCCCEEEEecCC------CcEEEEeC
Q psy4391          37 PNGEWLASSSAD----KLIKIWGAYDGKFEKTI-S-------GHKLGISDVAWSSDSRLLVSGSDD------KTLKIWEL   98 (231)
Q Consensus        37 ~~~~~l~~~~~d----g~i~i~~~~~~~~~~~~-~-------~~~~~v~~~~~~~~~~~l~~~~~~------g~i~~~d~   98 (231)
                      .++..++.|+.+    ..+.+||..+......- .       .....-....+..+++.++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777653    35788888777655433 1       111112222332266777777653      35788998


Q ss_pred             CCceeeee--ecCCCcceEEEEECCCCCEEEEeecCC--cEEEEECCCCceeeec-----cCCCCCeEEEEEcCC-CCeE
Q psy4391          99 SSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRIWDVRTGKCLKTL-----PAHSDPVSAVHFNRD-GSLI  168 (231)
Q Consensus        99 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~-----~~~~~~v~~~~~~~~-~~~l  168 (231)
                      .+.+....  +......- ++..-.++.+++.|+.++  .+.+||+.+......-     ........++.+..+ ++++
T Consensus       476 ~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            87543322  11111111 222323778888887654  6899999876542221     111111223455544 6677


Q ss_pred             EEEec--C-----CeEEEEeCCCCce-----eeeeecC--CCCCeEEEEECCCCCEEEEEeC--------CCeEEEEeCC
Q psy4391         169 VSSSY--D-----GLCRIWDTASGQC-----LKTLIDD--DNPPVSFVKFSPNGKYILAATL--------DNTLKLWDSY  226 (231)
Q Consensus       169 ~~~~~--d-----g~i~v~d~~~~~~-----~~~~~~~--~~~~i~~~~~s~~g~~l~~~s~--------d~~v~vwd~~  226 (231)
                      +.|+.  +     ..+.+||+.+.+.     ...+...  ....-..+....+++.++.|+.        .+.|.+||..
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~  634 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL  634 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence            77765  2     4688999988762     2222110  1111112233333677777774        3468888863

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.92  E-value=0.11  Score=41.37  Aligned_cols=104  Identities=13%  Similarity=0.189  Sum_probs=60.7

Q ss_pred             cccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee--eeeecC------CCcceEEEEECCC---CCEEEEeec------
Q psy4391          69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC--LKTLKG------HSNYVFCCNFNPQ---SNLIVSGSF------  131 (231)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~--~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~------  131 (231)
                      ......++|.|+|+++++-...+.|++++..++..  +..+..      .......++++|+   +..|+....      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            34567899999998776654445788887654432  222221      2345678999995   455544432      


Q ss_pred             -------CCcEEEEECCCC--c-----eee-eccC-CCCCeEEEEEcCCCCeEEEEe
Q psy4391         132 -------DESVRIWDVRTG--K-----CLK-TLPA-HSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus       132 -------d~~i~v~d~~~~--~-----~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~  172 (231)
                             ...|.-+++..+  .     .+. .+.. .......|+|.|||.++++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   234555554322  1     111 1221 124578899999998777654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.92  E-value=0.028  Score=43.12  Aligned_cols=102  Identities=14%  Similarity=0.161  Sum_probs=56.6

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEE-------ecccccEEEEEECCC---CCEEEEec-C-------
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-------SGHKLGISDVAWSSD---SRLLVSGS-D-------   89 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-------~~~~~~v~~~~~~~~---~~~l~~~~-~-------   89 (231)
                      ..-..++|.|+|+.|+.+...|.|++++.. +.....+       .........++++|+   +..|+.+. .       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            456899999999933445678999988742 3221111       112345788999995   44444332 2       


Q ss_pred             CCcEEEEeCCCc-----eeeee---ecC---CCcceEEEEECCCCCEEEEee
Q psy4391          90 DKTLKIWELSSG-----KCLKT---LKG---HSNYVFCCNFNPQSNLIVSGS  130 (231)
Q Consensus        90 ~g~i~~~d~~~~-----~~~~~---~~~---~~~~v~~~~~~~~~~~l~~~~  130 (231)
                      ...|..++....     .....   +..   .......+.|.|+|.+.++.+
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  148 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG  148 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence            224555655432     11111   111   111234689999997666643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.86  E-value=0.087  Score=39.40  Aligned_cols=177  Identities=11%  Similarity=0.062  Sum_probs=88.5

Q ss_pred             EEEEeCCCcEEEeecCCCcEEE-EEecccccEEEEEECCCCCEEEEecC-----C------CcEEEEeCCCceeeee--e
Q psy4391          42 LASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSRLLVSGSD-----D------KTLKIWELSSGKCLKT--L  107 (231)
Q Consensus        42 l~~~~~dg~i~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-----~------g~i~~~d~~~~~~~~~--~  107 (231)
                      ++.|+  ..+..||..+.+... .+.....+........++..++.|+.     .      ..+..||..+.+-...  +
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence            34454  578899988777543 11111122222233456777777763     1      1277888887653221  1


Q ss_pred             cCCCcceEEEEECCCCCEEEEeecC--------CcEEEEECCCCceeee--ccCCCCCeEEEEEcCCCCeEEEEec-C--
Q psy4391         108 KGHSNYVFCCNFNPQSNLIVSGSFD--------ESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSY-D--  174 (231)
Q Consensus       108 ~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-d--  174 (231)
                      .........+.+  ++.+++.|+.+        ..+.+||+.+.+-...  +......-.++.  .++++++.|+. +  
T Consensus        86 p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           86 PSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR  161 (315)
T ss_dssp             SSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred             CcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence            111111111222  56677777642        3488999987653221  111111111222  35667777775 2  


Q ss_pred             ---CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeC
Q psy4391         175 ---GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-----TLKLWDS  225 (231)
Q Consensus       175 ---g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~-----~v~vwd~  225 (231)
                         ..+.+||+.+.+....-.......-..++ .-+++.++.|+.++     .+.+||.
T Consensus       162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~  219 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSI  219 (315)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEET
T ss_pred             cccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCEEEEEeccCCCCccceEEEEEC
Confidence               46889999887543221111111111122 22567777777654     5777775

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.72  E-value=0.11  Score=38.80  Aligned_cols=171  Identities=12%  Similarity=0.092  Sum_probs=83.4

Q ss_pred             cEEEeecCCCcEEEE-EecccccEEEEEECCCCCEEEEecC----CC-------cEEEEeCCCceeeee--ecCCCcceE
Q psy4391          50 LIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSRLLVSGSD----DK-------TLKIWELSSGKCLKT--LKGHSNYVF  115 (231)
Q Consensus        50 ~i~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~----~g-------~i~~~d~~~~~~~~~--~~~~~~~v~  115 (231)
                      .+..||..+.+.... +..............++..++.|+.    ++       .+..||..+.+....  +........
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  104 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG  104 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence            378888877765441 1111112222233456677777773    11       177888877653321  111111111


Q ss_pred             EEEECCCCCEEEEeecC-------CcEEEEECCCCceeeeccCCCCCe--EEEEEcCCCCeEEEEecC------CeEEEE
Q psy4391         116 CCNFNPQSNLIVSGSFD-------ESVRIWDVRTGKCLKTLPAHSDPV--SAVHFNRDGSLIVSSSYD------GLCRIW  180 (231)
Q Consensus       116 ~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d------g~i~v~  180 (231)
                      .+.+  ++.+++.|+.+       ..+.+||+.+.+-... .....+.  .+++. .++++++.|+.+      ..+.+|
T Consensus       105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y  180 (318)
T 2woz_A          105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY  180 (318)
T ss_dssp             EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred             eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence            2222  56777777754       2477889887653322 1111111  01122 356666776642      358899


Q ss_pred             eCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeC
Q psy4391         181 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-----NTLKLWDS  225 (231)
Q Consensus       181 d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d-----~~v~vwd~  225 (231)
                      |+.+.+....-.......-..++. -+++.++.|+.+     ..+.+||.
T Consensus       181 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~  229 (318)
T 2woz_A          181 NPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDL  229 (318)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEET
T ss_pred             cCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEEC
Confidence            998876433211111111111222 256777777643     35667775

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.68  E-value=0.17  Score=40.23  Aligned_cols=105  Identities=10%  Similarity=0.114  Sum_probs=59.8

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEE--Eec------ccccEEEEEECCC---CCEEEEecC------
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--ISG------HKLGISDVAWSSD---SRLLVSGSD------   89 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--~~~------~~~~v~~~~~~~~---~~~l~~~~~------   89 (231)
                      -.....++|.|+|+++++-...+.|++++..++.....  +..      ....+..++|+|+   +..|+.+..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            34667999999999777644334688877654543222  211      2356779999995   444443331      


Q ss_pred             -------CCcEEEEeCCCc-------eeee-eecC-CCcceEEEEECCCCCEEEEeec
Q psy4391          90 -------DKTLKIWELSSG-------KCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSF  131 (231)
Q Consensus        90 -------~g~i~~~d~~~~-------~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~~  131 (231)
                             ...|.-++....       +.+. .+.. .......+.|.|+|.+.++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   124554544321       1111 1221 1223578899999988776543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.67  E-value=0.024  Score=43.31  Aligned_cols=125  Identities=12%  Similarity=-0.060  Sum_probs=54.9

Q ss_pred             CcEEEEeCCCceeeee--ecCCCcceEEEEECCCCCEEEEeec------CCcEEEEEC--CCCceee--eccCCCCCeEE
Q psy4391          91 KTLKIWELSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSF------DESVRIWDV--RTGKCLK--TLPAHSDPVSA  158 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~v~d~--~~~~~~~--~~~~~~~~v~~  158 (231)
                      ..+.+||..+.+-...  +......-.++.. -++.+++.|+.      ...+..||+  .+.+...  .+.........
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            4688999887653322  2211111011222 25666677654      235777877  4433211  11111111111


Q ss_pred             EEEcCCCCeEEEEecC----------------------CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC
Q psy4391         159 VHFNRDGSLIVSSSYD----------------------GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       159 ~~~~~~~~~l~~~~~d----------------------g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~  216 (231)
                      .+...++++++.|+.+                      ..+.+||+.+.+.... ...........+...+++.++.|+.
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~i~v~GG~  325 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS-GELSQGRAYGVSLPWNNSLLIIGGE  325 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE-EECSSCCBSSEEEEETTEEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC-CCCCCCcccceeEEeCCEEEEEeee
Confidence            1222356677777632                      2477899887654332 1111111111223346788888885


Q ss_pred             C
Q psy4391         217 D  217 (231)
Q Consensus       217 d  217 (231)
                      +
T Consensus       326 ~  326 (357)
T 2uvk_A          326 T  326 (357)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.63  E-value=0.15  Score=39.02  Aligned_cols=185  Identities=12%  Similarity=0.117  Sum_probs=96.9

Q ss_pred             cceEEEEECCC---CCEEEEEeC----C----CcEEEeecCCC--cE--EEE----Eec-ccccEEEEEECCCCCEEEEe
Q psy4391          28 KAVSSVKFSPN---GEWLASSSA----D----KLIKIWGAYDG--KF--EKT----ISG-HKLGISDVAWSSDSRLLVSG   87 (231)
Q Consensus        28 ~~i~~~~~~~~---~~~l~~~~~----d----g~i~i~~~~~~--~~--~~~----~~~-~~~~v~~~~~~~~~~~l~~~   87 (231)
                      .....++++|+   +..|+.+..    +    +.|..|+....  ..  ...    +.. .......++|.|||.++++.
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            45788999997   555544332    2    56667766443  11  111    211 11123568999999866664


Q ss_pred             cCC-------------CcEEEEeCCCce-------eeeee-cCCCcceEEEEECC-CCCEEEEeecCC---cEEEEECCC
Q psy4391          88 SDD-------------KTLKIWELSSGK-------CLKTL-KGHSNYVFCCNFNP-QSNLIVSGSFDE---SVRIWDVRT  142 (231)
Q Consensus        88 ~~~-------------g~i~~~d~~~~~-------~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~---~i~v~d~~~  142 (231)
                      +..             |.|.-++.+..-       ....+ .++. ....++|+| +++++++-....   .|.+..  .
T Consensus       153 G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~  229 (354)
T 3a9g_A          153 GDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--K  229 (354)
T ss_dssp             CCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--T
T ss_pred             CCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--C
Confidence            332             345555544210       00111 1222 244688999 566655543322   233322  1


Q ss_pred             Cc------------------eeeeccCCCCCeEEEEEc-------CCCCeEEEEecCCeEEEEeCCCC-cee--eeeecC
Q psy4391         143 GK------------------CLKTLPAHSDPVSAVHFN-------RDGSLIVSSSYDGLCRIWDTASG-QCL--KTLIDD  194 (231)
Q Consensus       143 ~~------------------~~~~~~~~~~~v~~~~~~-------~~~~~l~~~~~dg~i~v~d~~~~-~~~--~~~~~~  194 (231)
                      +.                  .+..+.........++|.       .+|.++++....+.|...++... +..  ..+...
T Consensus       230 G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~  309 (354)
T 3a9g_A          230 GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKN  309 (354)
T ss_dssp             TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTT
T ss_pred             CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccC
Confidence            11                  111221112356778883       46767766666778888888753 221  233322


Q ss_pred             CCCCeEEEEECCCCCEEEEEe
Q psy4391         195 DNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       195 ~~~~i~~~~~s~~g~~l~~~s  215 (231)
                      ....+..+++.|||.++++..
T Consensus       310 ~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          310 VFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCeeEEEECCCCcEEEEEe
Confidence            234577899999997666654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.47  E-value=0.2  Score=38.34  Aligned_cols=149  Identities=13%  Similarity=0.113  Sum_probs=82.3

Q ss_pred             EEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee--eeee----cCCCcceEEEEECCC---CCEEEEe---ec
Q psy4391          64 TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC--LKTL----KGHSNYVFCCNFNPQ---SNLIVSG---SF  131 (231)
Q Consensus        64 ~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~l~~~---~~  131 (231)
                      .+.........++|.|+|+.+++--..|.|++++..+++.  +..+    .........++++|+   +..|+..   ..
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            3443445678999999998776665589999998765443  2212    122345788999995   3444332   23


Q ss_pred             CCcEEEEECCCCc----------ee-eecc-CCCCCeEEEEEcCCCCeEEEEec-------------CCeEEEEeCCCCc
Q psy4391         132 DESVRIWDVRTGK----------CL-KTLP-AHSDPVSAVHFNRDGSLIVSSSY-------------DGLCRIWDTASGQ  186 (231)
Q Consensus       132 d~~i~v~d~~~~~----------~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~v~d~~~~~  186 (231)
                      +..|.-|.+..+.          .+ ..+. ........|.|.|||.++++.+.             .|.|.-++....-
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            4456666554311          11 1121 11223456899999987776542             2455545554220


Q ss_pred             -------eeeeeecCCCCCeEEEEECCCCCEEEE
Q psy4391         187 -------CLKTLIDDDNPPVSFVKFSPNGKYILA  213 (231)
Q Consensus       187 -------~~~~~~~~~~~~i~~~~~s~~g~~l~~  213 (231)
                             ....+..... ....++|+|+|++.++
T Consensus       186 p~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~  218 (347)
T 3das_A          186 APGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             CTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred             cCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence                   0111222222 2345899998876554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.12  E-value=0.31  Score=37.21  Aligned_cols=106  Identities=15%  Similarity=0.150  Sum_probs=62.0

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEE--E----ecccccEEEEEECCC---CCEEEEe---cCCCc
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--I----SGHKLGISDVAWSSD---SRLLVSG---SDDKT   92 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--~----~~~~~~v~~~~~~~~---~~~l~~~---~~~g~   92 (231)
                      .--..-..++|.|+|+++++-...|.|++++..++.....  +    .........++++|+   +..|+..   ..+..
T Consensus        29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            3345678999999999777754489999887655543221  1    123456889999995   3334332   23445


Q ss_pred             EEEEeCCCc----------eee-eeecC-CCcceEEEEECCCCCEEEEee
Q psy4391          93 LKIWELSSG----------KCL-KTLKG-HSNYVFCCNFNPQSNLIVSGS  130 (231)
Q Consensus        93 i~~~d~~~~----------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~  130 (231)
                      |.-|....+          +.+ ..+.. .......+.|.|+|.+.++.+
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            555555431          111 11211 111234588999998877754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.03  E-value=0.41  Score=37.79  Aligned_cols=159  Identities=11%  Similarity=0.198  Sum_probs=104.6

Q ss_pred             ccceEEEEECCCCCEEEEEe-------CCCcEEEeecCCCcEEEEEecccccEEEEEECCC---CCEEEEecC---CCcE
Q psy4391          27 TKAVSSVKFSPNGEWLASSS-------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SRLLVSGSD---DKTL   93 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~-------~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---~g~i   93 (231)
                      ...|..-.-+++.+|++..+       ..|.+.+|..+ .+..+.+.+|......+...-+   ...++.+.+   .+.+
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL  228 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  228 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-TCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEE
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-ccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence            35688888899999876432       24678899885 4455667777655444433211   123344433   2688


Q ss_pred             EEEeCCCc---ee-----eeee----cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEE
Q psy4391          94 KIWELSSG---KC-----LKTL----KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF  161 (231)
Q Consensus        94 ~~~d~~~~---~~-----~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  161 (231)
                      ++-++...   ..     ...+    ....+...++..++....++.-+.-|.+++||++++.++..-+....+|...+.
T Consensus       229 hi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~  308 (494)
T 1bpo_A          229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP  308 (494)
T ss_dssp             EEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecc
Confidence            88888532   10     1111    122456678889999999999999999999999999998877666677776666


Q ss_pred             cCCCCeEEEEecCCeEEEEeCCCCc
Q psy4391         162 NRDGSLIVSSSYDGLCRIWDTASGQ  186 (231)
Q Consensus       162 ~~~~~~l~~~~~dg~i~v~d~~~~~  186 (231)
                      +....=+++....|.|.-..+.+..
T Consensus       309 ~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          309 HEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             ETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             cCCCCcEEEEccCceEEEEEEcccc
Confidence            6555556666677877666555443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.01  E-value=0.23  Score=41.77  Aligned_cols=149  Identities=11%  Similarity=0.092  Sum_probs=80.0

Q ss_pred             CCCEEEEEeCCC------cEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCCC--cEEEEeCCCceeeeee
Q psy4391          38 NGEWLASSSADK------LIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDK--TLKIWELSSGKCLKTL  107 (231)
Q Consensus        38 ~~~~l~~~~~dg------~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g--~i~~~d~~~~~~~~~~  107 (231)
                      +++.++.|+.++      .+.+||..+......-.  ..... ..++...+++.++.|+.++  .+.+||..+......-
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            666666766442      46778877665443211  11111 2233324677777877654  6899999876543221


Q ss_pred             c-----CCCcceEEEEECCC-CCEEEEeec--C-----CcEEEEECCCCce-----eeecc----CCCCCeEEEEEcCCC
Q psy4391         108 K-----GHSNYVFCCNFNPQ-SNLIVSGSF--D-----ESVRIWDVRTGKC-----LKTLP----AHSDPVSAVHFNRDG  165 (231)
Q Consensus       108 ~-----~~~~~v~~~~~~~~-~~~l~~~~~--d-----~~i~v~d~~~~~~-----~~~~~----~~~~~v~~~~~~~~~  165 (231)
                      .     .......++.++.+ +.+++.|+.  +     ..+..||+.+...     -..+.    .......+ ....++
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~-~~~~~~  608 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQI-KYITPR  608 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEE-EEEETT
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceE-EEeCCC
Confidence            1     11111122344544 667777765  2     3488999887761     11111    11111122 233336


Q ss_pred             CeEEEEecC--------CeEEEEeCCCCcee
Q psy4391         166 SLIVSSSYD--------GLCRIWDTASGQCL  188 (231)
Q Consensus       166 ~~l~~~~~d--------g~i~v~d~~~~~~~  188 (231)
                      ++++.|+.+        ..+.+||+.+.+..
T Consensus       609 ~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          609 KLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             EEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             EEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            777777743        46899999887654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.08  Score=40.31  Aligned_cols=112  Identities=8%  Similarity=0.135  Sum_probs=69.3

Q ss_pred             CEEEEecCCCcEEEEeCCCceeeeeecCCC-cceEEEEE--CC-CCCEEEEe-ecCCcEEEEECCCCceeeeccC----C
Q psy4391          82 RLLVSGSDDKTLKIWELSSGKCLKTLKGHS-NYVFCCNF--NP-QSNLIVSG-SFDESVRIWDVRTGKCLKTLPA----H  152 (231)
Q Consensus        82 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~-~~v~~~~~--~~-~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~----~  152 (231)
                      ..++.++.||.|.-+|.++|+..-.++... .++....-  .+ ++..++.. ..||.|..++..+|.....+..    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            467888999999999999998877765431 12221110  01 22333333 6899999999888754333221    1


Q ss_pred             CCCeEE---EEE-cC----CCCeEEEEecCCeEEEEeCCCCceeeeeec
Q psy4391         153 SDPVSA---VHF-NR----DGSLIVSSSYDGLCRIWDTASGQCLKTLID  193 (231)
Q Consensus       153 ~~~v~~---~~~-~~----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~  193 (231)
                      ..++..   ..+ .+    .+..+++|+.+|.+...|+.+|+.+-++..
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            222221   001 00    356788999999999999999998766643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.94  E-value=0.11  Score=39.52  Aligned_cols=140  Identities=10%  Similarity=0.014  Sum_probs=64.2

Q ss_pred             CcEEEeecCCCcEEEEEecccc-cE-EEEEECCCCCEEEEecC------CCcEEEEeC--CCceeee--eecCCCcceEE
Q psy4391          49 KLIKIWGAYDGKFEKTISGHKL-GI-SDVAWSSDSRLLVSGSD------DKTLKIWEL--SSGKCLK--TLKGHSNYVFC  116 (231)
Q Consensus        49 g~i~i~~~~~~~~~~~~~~~~~-~v-~~~~~~~~~~~l~~~~~------~g~i~~~d~--~~~~~~~--~~~~~~~~v~~  116 (231)
                      ..+.+||..+.+....-..... .. ..++. .+++.++.|+.      ...+..||+  .+.+...  .+.........
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            4688888877765443221111 11 22222 24556666653      345777876  4433221  11111111111


Q ss_pred             EEECCCCCEEEEeecC----------------------CcEEEEECCCCcee--eeccCCCCCeEEEEEcCCCCeEEEEe
Q psy4391         117 CNFNPQSNLIVSGSFD----------------------ESVRIWDVRTGKCL--KTLPAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus       117 ~~~~~~~~~l~~~~~d----------------------~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      .....++.+++.|+.+                      ..+.+||+.+.+..  ..+......-.++  ..++++++.|+
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG  324 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGG  324 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEee
Confidence            1122356677777632                      24778998865432  2222211111222  23677777887


Q ss_pred             cCC------eEEEEeCCCCceeeee
Q psy4391         173 YDG------LCRIWDTASGQCLKTL  191 (231)
Q Consensus       173 ~dg------~i~v~d~~~~~~~~~~  191 (231)
                      .++      .+.++++++++.....
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eCCCCCEeeeEEEEEEcCcEeEeee
Confidence            653      4556688877765543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.69  E-value=0.83  Score=38.71  Aligned_cols=187  Identities=15%  Similarity=0.158  Sum_probs=104.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL  107 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~  107 (231)
                      ..|.++.-..+|. |..|+.+| +..||..+.+...........|..+.. .++. |..++.+ -+..||..+++.....
T Consensus        63 ~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~~~~  137 (758)
T 3ott_A           63 TRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLTSFD  137 (758)
T ss_dssp             SCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEEEEC
T ss_pred             ceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEEEec
Confidence            3577877776664 44455554 778887665432211111223555543 3554 4445555 5778888765433210


Q ss_pred             c----CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeee-ccC----CCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         108 K----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT-LPA----HSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       108 ~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                      .    .....+.++....++.+.+ ++.+ -+..+|..+++.... ...    ....|.++...+++..|..|+. +-+.
T Consensus       138 ~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~  214 (758)
T 3ott_A          138 TRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLF  214 (758)
T ss_dssp             HHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEE
T ss_pred             cCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCe
Confidence            0    1234577777787887766 3443 477888776643211 111    1234788888777765555554 4577


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .+|..+++... +.......|.++..+.+|.+.+. +. +-+.+++.
T Consensus       215 ~~~~~~~~~~~-~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~  258 (758)
T 3ott_A          215 QYFPSTGQIKQ-TEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHN  258 (758)
T ss_dssp             EEETTTTEEEE-EEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECC
T ss_pred             EEcCCCCeEEe-ccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEec
Confidence            88887765322 21111234677888888876554 44 45667764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.46  E-value=1.1  Score=40.99  Aligned_cols=192  Identities=12%  Similarity=0.183  Sum_probs=110.0

Q ss_pred             EEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCC-ceeeeeecCC-
Q psy4391          33 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCLKTLKGH-  110 (231)
Q Consensus        33 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~-~~~~~~~~~~-  110 (231)
                      ...+|..+.||.- ...+++|+++++........-. .+|.-=.|-.+.. |+-.+ +..|+-|++.. ..+++.+..| 
T Consensus        71 AIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           71 AIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             hccCCCcceEEEe-cCCeEEEeehHHhhhhcccccC-CCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence            4456666666654 3678999999876555544322 2454446654433 33332 45799999974 3444444433 


Q ss_pred             ---CcceEEEEECCCCCEEEEee-------cCCcEEEEECCCCceeeeccCCCCCeEEEEEc--CCC-CeEEEEe---cC
Q psy4391         111 ---SNYVFCCNFNPQSNLIVSGS-------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN--RDG-SLIVSSS---YD  174 (231)
Q Consensus       111 ---~~~v~~~~~~~~~~~l~~~~-------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~l~~~~---~d  174 (231)
                         ...|.....+++.++++..|       -.|.+.+|..+.+. ...+.+|.+....+...  +.. ..++.+.   ..
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g  225 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence               34566677788888776543       24678888877543 34455555443333322  111 2222222   23


Q ss_pred             CeEEEEeCCCC---c-e-----eeeeecC---CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy4391         175 GLCRIWDTASG---Q-C-----LKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLP  230 (231)
Q Consensus       175 g~i~v~d~~~~---~-~-----~~~~~~~---~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~~~  230 (231)
                      +.+++.++...   . .     .......   ...|| ++..++....+...+.-|.|.+||.....+
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv-~~~vs~k~g~iy~itk~G~~~~~d~~t~~~  292 (1630)
T 1xi4_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTC  292 (1630)
T ss_pred             ceEEEEecCCCccCCCCCccccccccCCcccccCcce-EEEeccccCEEEEEecCceEEEEecccchh
Confidence            68888887432   1 0     1111111   22344 477788888899999999999999765543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.32  E-value=1.6  Score=39.91  Aligned_cols=157  Identities=11%  Similarity=0.217  Sum_probs=92.6

Q ss_pred             cceEEEEECCCCCEEEEEe-------CCCcEEEeecCCCcEEEEEecccccEEEEEEC---CCCCEEEEecC---CCcEE
Q psy4391          28 KAVSSVKFSPNGEWLASSS-------ADKLIKIWGAYDGKFEKTISGHKLGISDVAWS---SDSRLLVSGSD---DKTLK   94 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~-------~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~---~g~i~   94 (231)
                      ..|..-.-+++.+|++..+       ..|.+.+|..+. +..+.+.+|......+...   +....++.+..   .+.++
T Consensus       151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLh  229 (1630)
T 1xi4_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  229 (1630)
T ss_pred             CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEE
Confidence            4677888889999876432       347888888753 3344555655443333221   11223332222   36788


Q ss_pred             EEeCCCc---ee-e--e--ee--c--CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEc
Q psy4391          95 IWELSSG---KC-L--K--TL--K--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN  162 (231)
Q Consensus        95 ~~d~~~~---~~-~--~--~~--~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~  162 (231)
                      +-++...   .. .  +  .+  .  ...+...++..++....+...+.-|.+++||+.++.++..-+....+|...+.+
T Consensus       230 i~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~  309 (1630)
T 1xi4_A          230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH  309 (1630)
T ss_pred             EEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccC
Confidence            8887542   11 0  0  01  0  123445678888888899999999999999999998876655555555554444


Q ss_pred             CCCCeEEEEecCCeEEEEeCCCC
Q psy4391         163 RDGSLIVSSSYDGLCRIWDTASG  185 (231)
Q Consensus       163 ~~~~~l~~~~~dg~i~v~d~~~~  185 (231)
                      ....-+++....|.|.-..+...
T Consensus       310 ~~~~g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          310 EATAGIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             CCCCceEEEcCCceEEEEEEccc
Confidence            33333444456666655544433

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.46  E-value=0.29  Score=39.82  Aligned_cols=69  Identities=9%  Similarity=0.156  Sum_probs=48.6

Q ss_pred             EEEEECCCCCEEEEee-cCCcEEEEECCCCc------e-------eeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEE
Q psy4391         115 FCCNFNPQSNLIVSGS-FDESVRIWDVRTGK------C-------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       115 ~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~------~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~  180 (231)
                      ..+..+|||++++.++ -+.++.++|.+.-.      .       ...... .-.....+|+++|.-..+---|.+|..|
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~~G~aYTtlfidSqvvkW  404 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDGRGNAYTTLFIDSQVVKW  404 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECCCCceEeeeeecceEEEE
Confidence            3578899999988765 47889999987421      1       112222 2345788999999555556689999999


Q ss_pred             eCCC
Q psy4391         181 DTAS  184 (231)
Q Consensus       181 d~~~  184 (231)
                      ++..
T Consensus       405 ni~~  408 (638)
T 3sbq_A          405 NMEE  408 (638)
T ss_dssp             EHHH
T ss_pred             eccH
Confidence            9864

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.36  E-value=2.4  Score=33.59  Aligned_cols=190  Identities=13%  Similarity=0.171  Sum_probs=109.7

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCC-cEEEEEeccc----ccEEEEEECCCCCEEEEecC-------CCcEEE
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHK----LGISDVAWSSDSRLLVSGSD-------DKTLKI   95 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-------~g~i~~   95 (231)
                      ..|.--.|-.+.. |+.-+ +..|+-|+++.. ...+.+..|.    ..|....-+++.+.++..+-       .|.+.+
T Consensus       106 e~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL  183 (494)
T 1bpo_A          106 DDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL  183 (494)
T ss_dssp             SCCCEEEEEETTE-EEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEE
T ss_pred             CCceEEEecCCCe-EEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEE
Confidence            4455556643333 33222 567888888642 3445554432    34666677888887654332       367889


Q ss_pred             EeCCCceeeeeecCCCcceEEEEECCC---CCEEEEeec---CCcEEEEECCCC---ce------eeec-c--CCCCCeE
Q psy4391          96 WELSSGKCLKTLKGHSNYVFCCNFNPQ---SNLIVSGSF---DESVRIWDVRTG---KC------LKTL-P--AHSDPVS  157 (231)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---d~~i~v~d~~~~---~~------~~~~-~--~~~~~v~  157 (231)
                      |..+.+. .+.+.+|......+....+   .+++..+..   .+.+++.++...   ..      +..+ .  ...+-..
T Consensus       184 YS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv  262 (494)
T 1bpo_A          184 YSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  262 (494)
T ss_dssp             EESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred             eeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence            9987543 4567777665544433221   123443433   378999998543   11      0111 1  1234456


Q ss_pred             EEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEE
Q psy4391         158 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK  221 (231)
Q Consensus       158 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~  221 (231)
                      ++..++.-..++..+.-|.+++||+.++.++..-.-... +|-..+-+.+..-+++....|.|.
T Consensus       263 amqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl  325 (494)
T 1bpo_A          263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVL  325 (494)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEE
T ss_pred             EEEecccCCEEEEEecCceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEE
Confidence            788998888899999999999999999998776543332 232223333334444445666554

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=91.90  E-value=6.8  Score=35.21  Aligned_cols=128  Identities=12%  Similarity=0.110  Sum_probs=73.2

Q ss_pred             EEEEeCCCceeeeeecCCC-cceEEEEECCCCCEEEEeecCCcEEEEECCCCcee--eeccCCCCCeEEEEEcCC-----
Q psy4391          93 LKIWELSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL--KTLPAHSDPVSAVHFNRD-----  164 (231)
Q Consensus        93 i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~-----  164 (231)
                      |++.+......+..+.... ..|..++.+.  ..++.+. ++.+.++++..++..  ... .....|.|+++.|.     
T Consensus       494 Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~  569 (1158)
T 3ei3_A          494 VRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNG  569 (1158)
T ss_dssp             EEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTT
T ss_pred             EEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcc
Confidence            4455544333444444222 2344444443  3455554 577888877655321  121 22457999998763     


Q ss_pred             -CCeEEEEec-CCeEEEEeCCCCceeeeeecCCCCCeEEEEEC--CCCCEEEEEeCCCeEEEEe
Q psy4391         165 -GSLIVSSSY-DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS--PNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       165 -~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s--~~g~~l~~~s~d~~v~vwd  224 (231)
                       ++++++|.. |++++++++.+.+.+............++.+.  ....+|.+|-.||.+..+.
T Consensus       570 ~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~  633 (1158)
T 3ei3_A          570 LSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFG  633 (1158)
T ss_dssp             CCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred             cccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEE
Confidence             368899987 99999999987665433222222222333221  2346888888999876554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.07  E-value=2.2  Score=34.95  Aligned_cols=66  Identities=11%  Similarity=0.160  Sum_probs=43.7

Q ss_pred             EEEEcCCCCeEEEEe-cCCeEEEEeCCCCce-------------eeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         158 AVHFNRDGSLIVSSS-YDGLCRIWDTASGQC-------------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       158 ~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~-------------~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      .+..+|||+++++++ .+.++.++|.+....             ..+..  -+..-...+|+++|.-..+--.|.+|.-|
T Consensus       327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G~aYTtlfidSqvvkW  404 (638)
T 3sbq_A          327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRGNAYTTLFIDSQVVKW  404 (638)
T ss_dssp             CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSSEEEEEETTTTEEEEE
T ss_pred             ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCCceEeeeeecceEEEE
Confidence            467899999988766 467999999874211             11111  12223568999999433444479999999


Q ss_pred             eC
Q psy4391         224 DS  225 (231)
Q Consensus       224 d~  225 (231)
                      +.
T Consensus       405 ni  406 (638)
T 3sbq_A          405 NM  406 (638)
T ss_dssp             EH
T ss_pred             ec
Confidence            85

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.78  E-value=6.5  Score=31.31  Aligned_cols=105  Identities=15%  Similarity=0.113  Sum_probs=59.8

Q ss_pred             cccEEEEEECCCCC-EEEEecCCCcEEEEeCCCce---eeeeec----C-----CCcceEEEEECCC----CCEEEEeec
Q psy4391          69 KLGISDVAWSSDSR-LLVSGSDDKTLKIWELSSGK---CLKTLK----G-----HSNYVFCCNFNPQ----SNLIVSGSF  131 (231)
Q Consensus        69 ~~~v~~~~~~~~~~-~l~~~~~~g~i~~~d~~~~~---~~~~~~----~-----~~~~v~~~~~~~~----~~~l~~~~~  131 (231)
                      -.....|+|.|++. .++++...|.|++++.....   .+..+.    .     .......++++|+    +.+.++-+.
T Consensus        13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            34567899999986 46666788999999754321   122221    0     1245678999996    333333222


Q ss_pred             --C----------CcEEEEECCCC----------ceeeecc--CCCCCeEEEEEcCCCCeEEEEec
Q psy4391         132 --D----------ESVRIWDVRTG----------KCLKTLP--AHSDPVSAVHFNRDGSLIVSSSY  173 (231)
Q Consensus       132 --d----------~~i~v~d~~~~----------~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~  173 (231)
                        +          ..|.-|.+..+          +.+..+.  ........|+|.|||.++++.+.
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence              1          13444554321          1222221  12335678999999987776554

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=89.61  E-value=2.6  Score=34.70  Aligned_cols=60  Identities=20%  Similarity=0.301  Sum_probs=44.0

Q ss_pred             eEEEEEcCCCCeEEEEecC------------CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe
Q psy4391         156 VSAVHFNRDGSLIVSSSYD------------GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       156 v~~~~~~~~~~~l~~~~~d------------g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                      .-.|.|+|.|.++++-..+            ..+.+.+..+++..+-+.......++.++|+||++.|++.-
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence            4679999999966654321            24666777777765555556677889999999999887764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=89.39  E-value=7  Score=31.13  Aligned_cols=105  Identities=10%  Similarity=0.038  Sum_probs=57.4

Q ss_pred             cceEEEEECCCCC-EEEEeecCCcEEEEECCCCc---eeeecc---C------CCCCeEEEEEcCC----CCeEEEEec-
Q psy4391         112 NYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGK---CLKTLP---A------HSDPVSAVHFNRD----GSLIVSSSY-  173 (231)
Q Consensus       112 ~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~---~~~~~~---~------~~~~v~~~~~~~~----~~~l~~~~~-  173 (231)
                      .....+++.|++. .++.+...|.|++++.....   .+..+.   .      .......|+++|+    +.++++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3456889999986 45556778999999754321   111111   1      1356788999996    333333222 


Q ss_pred             -C----------CeEEEEeCCC----------Cceeeeee-cCCCCCeEEEEECCCCCEEEEEeC
Q psy4391         174 -D----------GLCRIWDTAS----------GQCLKTLI-DDDNPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       174 -d----------g~i~v~d~~~----------~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~~s~  216 (231)
                       +          ..|.-|.+..          .+.+..+. .........|+|.|||.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          1343354432          11222222 112233567999999976666553

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=88.98  E-value=9.7  Score=32.22  Aligned_cols=185  Identities=13%  Similarity=0.079  Sum_probs=101.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe----cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceee
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCL  104 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~  104 (231)
                      .|.++.. .+| .|..++.+ .+..++..+.+......    .....|.++....++...+. ..+ -+..++..+++..
T Consensus       104 ~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~  178 (758)
T 3ott_A          104 DVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVG-TYN-GLCRYIPSNGKFE  178 (758)
T ss_dssp             CEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEE
T ss_pred             eEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEE-eCC-CHhhCccCCCceE
Confidence            3555543 344 34445555 57778876554432211    01235777877777776554 344 4677887765532


Q ss_pred             ee-ecC----CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEE
Q psy4391         105 KT-LKG----HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (231)
Q Consensus       105 ~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  179 (231)
                      .. ...    ....+.++...+++..|-.|+. +-+..+|..+++...........|.++....+|.+.+ |+. +-+.+
T Consensus       179 ~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~  255 (758)
T 3ott_A          179 GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYV  255 (758)
T ss_dssp             EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEE
T ss_pred             EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeE
Confidence            21 111    1224777777777665545554 4588889876653221111123577888777777555 444 45778


Q ss_pred             EeCCCCceeeeeec------CCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         180 WDTASGQCLKTLID------DDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       180 ~d~~~~~~~~~~~~------~~~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      ++..+++.......      .....|.++..+.+|.+.+ |+..| +.++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~  303 (758)
T 3ott_A          256 YHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLS  303 (758)
T ss_dssp             ECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEE
T ss_pred             EecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccc
Confidence            88876543221111      1123478888888887554 44455 4443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.40  E-value=4.7  Score=35.35  Aligned_cols=37  Identities=22%  Similarity=0.365  Sum_probs=31.7

Q ss_pred             CeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeee
Q psy4391         155 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL  191 (231)
Q Consensus       155 ~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~  191 (231)
                      .+.+++..++..++++-+.|+.+++|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4667777888889999999999999999999887654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=88.30  E-value=5.2  Score=32.80  Aligned_cols=61  Identities=18%  Similarity=0.285  Sum_probs=42.1

Q ss_pred             CeEEEEEcCCCCeEEEEec------------CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe
Q psy4391         155 PVSAVHFNRDGSLIVSSSY------------DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       155 ~v~~~~~~~~~~~l~~~~~------------dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                      ....|.|+++|.+.++...            ...+..++..+++....+.......++.++|+||++.|+++-
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            4567999999987773321            125777787777754443333445678999999999887765

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=87.83  E-value=7.3  Score=29.41  Aligned_cols=154  Identities=10%  Similarity=0.031  Sum_probs=84.8

Q ss_pred             cceEEE-EECC--CCCEEEEEeCCCcEEEeecCCCcE-----EE--EEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          28 KAVSSV-KFSP--NGEWLASSSADKLIKIWGAYDGKF-----EK--TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        28 ~~i~~~-~~~~--~~~~l~~~~~dg~i~i~~~~~~~~-----~~--~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      ..|.++ ....  +...++.++.+|.++.-...+...     ..  .+.. ...+..+........|+..+..|.+..+.
T Consensus        95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~  173 (327)
T 3uc1_A           95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS  173 (327)
T ss_dssp             CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred             CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence            345544 4432  567888999999998876533211     11  1222 23344444444556677777888877776


Q ss_pred             CC--Cc---------eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCC-------Cceeeecc--CCCCCeE
Q psy4391          98 LS--SG---------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT-------GKCLKTLP--AHSDPVS  157 (231)
Q Consensus        98 ~~--~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~--~~~~~v~  157 (231)
                      ..  .-         .....+. ..+.+.++...+++..++..+..|.++.-.+..       ++-+..+.  ...+.+.
T Consensus       174 ~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv  252 (327)
T 3uc1_A          174 ATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV  252 (327)
T ss_dssp             CCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred             CcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence            65  21         1111222 234566666656667888999999988876532       12222222  2123344


Q ss_pred             EEEEcCCCCeEEEEecCCeEEEEeCC
Q psy4391         158 AVHFNRDGSLIVSSSYDGLCRIWDTA  183 (231)
Q Consensus       158 ~~~~~~~~~~l~~~~~dg~i~v~d~~  183 (231)
                      .+....+...++..+.+|.+.-++..
T Consensus       253 ~~~~~~~~~~i~l~T~~G~~ir~~~~  278 (327)
T 3uc1_A          253 GALIVDDDSELYAVTSGGGVIRTAAR  278 (327)
T ss_dssp             EEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred             EEEEeCCCccEEEEcCCCeEEEEehh
Confidence            44433344556666777776666543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=85.98  E-value=19  Score=32.41  Aligned_cols=187  Identities=12%  Similarity=0.027  Sum_probs=92.3

Q ss_pred             ccceEEEEECCC------CCEEEEEeC-CCcEEEeecCCCcEEEEEec-ccccEEEEEEC--CCCCEEEEecCCCcEEEE
Q psy4391          27 TKAVSSVKFSPN------GEWLASSSA-DKLIKIWGAYDGKFEKTISG-HKLGISDVAWS--SDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        27 ~~~i~~~~~~~~------~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~~g~i~~~   96 (231)
                      ...|.|+++.|.      +++++.|.. |++++|+++.+........- ......++.+.  ....++..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999863      368888886 99999999976554433221 11223333332  233567888889987655


Q ss_pred             eCC--Cceee--eeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCe-EEEEEcCC--CCeEE
Q psy4391          97 ELS--SGKCL--KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPV-SAVHFNRD--GSLIV  169 (231)
Q Consensus        97 d~~--~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v-~~~~~~~~--~~~l~  169 (231)
                      .++  +++..  +...-...++.-..+...+..-+.+..+....++--+..-....+.  ...+ ....|+..  ..-++
T Consensus       633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~--~~~v~~~~~F~se~~~~g~v  710 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVN--LKEVNYMCPLNSDGYPDSLA  710 (1158)
T ss_dssp             EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBS--SSCCCEEEEECCSSSTTEEE
T ss_pred             EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccC--hHHhceEeccCcccCCCcEE
Confidence            443  43321  1111112233222233333333333334444444433221111121  1223 22344321  23344


Q ss_pred             EEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC
Q psy4391         170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~  216 (231)
                      ..+ ++.+++..+...+.+....-.-......++++|+.+.++.+..
T Consensus       711 ~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~  756 (1158)
T 3ei3_A          711 LAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSS  756 (1158)
T ss_dssp             EEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEE
T ss_pred             EEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEE
Confidence            333 4558887665433222221122335677889998887666553

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=81.46  E-value=15  Score=27.50  Aligned_cols=187  Identities=10%  Similarity=0.066  Sum_probs=99.9

Q ss_pred             CCCCEEEEEeCCCcEEEeecCCCcE-------EEEEe-cccccEEEEEECCCCCEEEEecCCCcEEEEeCC---Cc----
Q psy4391          37 PNGEWLASSSADKLIKIWGAYDGKF-------EKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELS---SG----  101 (231)
Q Consensus        37 ~~~~~l~~~~~dg~i~i~~~~~~~~-------~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~---~~----  101 (231)
                      ++...++..+.+|.|+--...+...       ...+. .....+..+........++..+..|.++-....   ..    
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~   85 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS   85 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence            4566777888899888765432211       11111 112234444444445567777777876655442   11    


Q ss_pred             --ee---eeeecCCCcceEEEEECC---CCCEEEEeecCCcEEEEECCC-------CceeeeccCCCCCeEEEEEcCCCC
Q psy4391         102 --KC---LKTLKGHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVRT-------GKCLKTLPAHSDPVSAVHFNRDGS  166 (231)
Q Consensus       102 --~~---~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~  166 (231)
                        .+   ...+.. .+.+..+..-+   +...++..+..|.++-..+..       |.....+.. .+.+..+.......
T Consensus        86 ~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~  163 (312)
T 1suu_A           86 KGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE  163 (312)
T ss_dssp             --CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred             CCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence              11   111222 23344433222   456788889999998877632       222223333 34555555444456


Q ss_pred             eEEEEecCCeEEEEeCCCCc-------eeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         167 LIVSSSYDGLCRIWDTASGQ-------CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      .++..+.+|.+..+....-.       -+..+.......+..+..-+++..+++.+..|..+....
T Consensus       164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~  229 (312)
T 1suu_A          164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM  229 (312)
T ss_dssp             EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred             EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence            78888889988888654311       111111122334555554455667888888998888775

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=80.97  E-value=14  Score=27.04  Aligned_cols=126  Identities=16%  Similarity=0.079  Sum_probs=58.2

Q ss_pred             CCcEEEEeCCC-ceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeE
Q psy4391          90 DKTLKIWELSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus        90 ~g~i~~~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  168 (231)
                      +|.|+.|-... ++.-... .....+..++.......++  . +|.++.|-......+..-......|..++--.+ ..+
T Consensus       119 ~G~v~~wG~n~~gqlg~~~-~~~~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-hs~  193 (282)
T 3qhy_B          119 DGKVIAWGDDSDGQTTVPA-EAQSGVTALDGGVYTALAV--K-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF-HSL  193 (282)
T ss_dssp             TTEEEEEECCTTSTTSCCG-GGGSSEEEEEECSSEEEEE--E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS-EEE
T ss_pred             CCeEEEecCCCCCcCCCCc-cCCCCeEEEEcccCEEEEE--E-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC-EEE
Confidence            77888886543 2211111 1123455555544332222  3 688888865432111100011235666654332 223


Q ss_pred             EEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         169 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      +.  .||.+..|-......+.. .......|..++.....  .++-+ ||.|..|-..
T Consensus       194 al--~~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~h--~~al~-~g~v~~wG~n  245 (282)
T 3qhy_B          194 AL--KDGKVIAWGDNRYKQTTV-PTEALSGVSAIASGEWY--SLALK-NGKVIAWGSS  245 (282)
T ss_dssp             EE--ETTEEEEEECCTTSTTCC-CGGGGSSCCEEEECSSC--EEEEE-TTEEEEESTT
T ss_pred             EE--ECCeEEEEECCCCCCCCC-CcccCCCceEEEcCCCE--EEEEE-CCEEEEecCC
Confidence            33  589999995433221111 11112245556554433  23333 8888888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	231
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-39
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-39
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-38
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-24
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-18
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-35
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-34
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-33
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-32
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-20
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-30
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-27
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-26
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-23
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-26
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-25
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-22
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-20
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-20
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-22
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-18
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-16
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-20
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-18
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-20
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-19
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-17
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-19
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-19
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-19
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-15
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-18
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-18
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-16
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-13
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-18
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-12
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-16
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-15
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-16
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-16
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-14
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-12
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-15
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-15
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-15
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-14
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-11
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-15
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	9e-11
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-13
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-12
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-12
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	7e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-12
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	9e-10
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-09
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-09
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-07
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	8e-07
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-06
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	9e-06
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	3e-05
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	2e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	2e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	0.002
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	0.001
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	0.002

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  136 bits (343), Expect = 1e-39
 Identities = 63/210 (30%), Positives = 111/210 (52%), Gaps = 21/210 (10%)

Query: 35  FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLK 94
             PNG+ + S+S DK IK+W    G   KT +GH+  +  V  + D  L+ S S+D+T++
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168

Query: 95  IWELSSGKCLKTLKGHSNYVFCCNFN--------------------PQSNLIVSGSFDES 134
           +W +++ +C   L+ H + V C ++                          ++SGS D++
Sbjct: 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228

Query: 135 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 194
           +++WDV TG CL TL  H + V  V F+  G  I+S + D   R+WD  + +C+KTL   
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 288

Query: 195 DNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           ++  V+ + F     Y++  ++D T+K+W+
Sbjct: 289 EH-FVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  136 bits (342), Expect = 2e-39
 Identities = 78/272 (28%), Positives = 115/272 (42%), Gaps = 63/272 (23%)

Query: 15  PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISD 74
           P    K+ L+GH   V+ V F P    + S+S D  IK+W    G FE+T+ GH   + D
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64

Query: 75  V------------------------------------------AWSSDSRLLVSGSDDKT 92
           +                                          +   +   +VS S DKT
Sbjct: 65  ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124

Query: 93  LKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH 152
           +K+WE+ +G C+KT  GH  +V     N    LI S S D++VR+W V T +C   L  H
Sbjct: 125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184

Query: 153 SDPVSAVHFN--------------------RDGSLIVSSSYDGLCRIWDTASGQCLKTLI 192
              V  + +                     + G  ++S S D   ++WD ++G CL TL+
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244

Query: 193 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             DN  V  V F   GK+IL+   D TL++WD
Sbjct: 245 GHDN-WVRGVLFHSGGKFILSCADDKTLRVWD 275

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  132 bits (332), Expect = 6e-38
 Identities = 51/181 (28%), Positives = 94/181 (51%), Gaps = 20/181 (11%)

Query: 21  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW--- 77
            T  GH + V  V+ + +G  +AS S D+ +++W     + +  +  H+  +  ++W   
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 78  -----------------SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFN 120
                                  L+SGS DKT+K+W++S+G CL TL GH N+V    F+
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 121 PQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
                I+S + D+++R+WD +  +C+KTL AH   V+++ F++    +V+ S D   ++W
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

Query: 181 D 181
           +
Sbjct: 317 E 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.3 bits (238), Expect = 2e-24
 Identities = 48/168 (28%), Positives = 91/168 (54%), Gaps = 1/168 (0%)

Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS 123
            +SGH+  ++ V +     ++VS S+D T+K+W+  +G   +TLKGH++ V   +F+   
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 124 NLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 183
            L+ S S D ++++WD +  +C++T+  H   VS+V    +G  IVS+S D   ++W+  
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPCLPK 231
           +G C+KT            + + +G  I + + D T+++W       K
Sbjct: 132 TGYCVKTFTGHREWVRMV-RPNQDGTLIASCSNDQTVRVWVVATKECK 178

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.2 bits (196), Expect = 2e-18
 Identities = 23/79 (29%), Positives = 45/79 (56%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
              TL GH   V  V F   G+++ S + DK +++W   + +  KT++ H+  ++ + + 
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 298

Query: 79  SDSRLLVSGSDDKTLKIWE 97
             +  +V+GS D+T+K+WE
Sbjct: 299 KTAPYVVTGSVDQTVKVWE 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  126 bits (315), Expect = 3e-35
 Identities = 58/260 (22%), Positives = 100/260 (38%), Gaps = 46/260 (17%)

Query: 11  SNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 70
              +     + TL GH   + ++ +  +   L S+S D  + IW +Y       I     
Sbjct: 39  PVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS 98

Query: 71  GISDVAWSSDSRLLVSGSD----------------------------------------- 89
            +   A++     +  G                                           
Sbjct: 99  WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158

Query: 90  ----DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
               D T  +W++ +G+   T  GH+  V   +  P + L VSG+ D S ++WDVR G C
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC 218

Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKF 204
            +T   H   ++A+ F  +G+   + S D  CR++D  + Q L T   D+    ++ V F
Sbjct: 219 RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 205 SPNGKYILAATLDNTLKLWD 224
           S +G+ +LA   D    +WD
Sbjct: 279 SKSGRLLLAGYDDFNCNVWD 298

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  124 bits (311), Expect = 1e-34
 Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 2/158 (1%)

Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV 85
           HT  V S+  +P+     S + D   K+W   +G   +T +GH+  I+ + +  +     
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242

Query: 86  SGSDDKTLKIWELSSGKCLKTLKGHSNY--VFCCNFNPQSNLIVSGSFDESVRIWDVRTG 143
           +GSDD T ++++L + + L T    +    +   +F+    L+++G  D +  +WD    
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302

Query: 144 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
                L  H + VS +    DG  + + S+D   +IW+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  120 bits (300), Expect = 4e-33
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 3/179 (1%)

Query: 48  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107
           D    +W    G+   T +GH   +  ++ + D+RL VSG+ D + K+W++  G C +T 
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

Query: 108 KGHSNYVFCCNFNPQSNLIVSGSFDESVRI--WDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
            GH + +    F P  N   +GS D + R+            +       +++V F++ G
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282

Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
            L+++   D  C +WD         L   DN  VS +  + +G  +   + D+ LK+W+
Sbjct: 283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  117 bits (294), Expect = 3e-32
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 2/123 (1%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL--GISDVA 76
            + T  GH   ++++ F PNG   A+ S D   +++     +   T S   +  GI+ V+
Sbjct: 218 CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS 277

Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
           +S   RLL++G DD    +W+         L GH N V C         + +GS+D  ++
Sbjct: 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337

Query: 137 IWD 139
           IW+
Sbjct: 338 IWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.3 bits (212), Expect = 1e-20
 Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 46/214 (21%)

Query: 60  KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNF 119
           +  +T+ GH   I  + W +DSRLLVS S D  L IW+  +   +  +   S++V  C +
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105

Query: 120 NPQSNLIVSGSFDESVRIWDVRT------------------------------------- 142
            P  N +  G  D    I++++T                                     
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165

Query: 143 --------GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 194
                   G+   T   H+  V ++    D  L VS + D   ++WD   G C +T    
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225

Query: 195 DNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC 228
           ++  ++ + F PNG      + D T +L+D    
Sbjct: 226 ES-DINAICFFPNGNAFATGSDDATCRLFDLRAD 258

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (283), Expect = 3e-30
 Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 25/172 (14%)

Query: 35  FSPNGEWLASSSADKLIKIWGAYDGKFEKTI-------SGHKLGISDVAWSSDSRLLVSG 87
              +G+++A+ S D+ +++W +  G   + +       +GHK  +  V ++ D + +VSG
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 88  SDDKTLKIWELSSGK------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 135
           S D+++K+W L +              C  T  GH ++V           I+SGS D  V
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332

Query: 136 RIWDVRTGKCLKTLPAHSDPVSAVH------FNRDGSLIVSSSYDGLCRIWD 181
             WD ++G  L  L  H + V +V          + ++  + S D   RIW 
Sbjct: 333 LFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (259), Expect = 6e-27
 Identities = 58/282 (20%), Positives = 101/282 (35%), Gaps = 66/282 (23%)

Query: 9   SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKL------------------ 50
           S++N  P  +   +       + SV FSP+G++LA+ + D+L                  
Sbjct: 103 SAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 162

Query: 51  ------------------------IKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVS 86
                                   ++IW    G+   T+S      +      D + + +
Sbjct: 163 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222

Query: 87  GSDDKTLKIWELSSGKCLKTLK-------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
           GS D+ +++W+  +G  ++ L        GH + V+   F      +VSGS D SV++W+
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

Query: 140 VRTGK------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
           ++               C  T   H D V +V   ++   I+S S D     WD  SG  
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342

Query: 188 LKTLIDDDNPPVS-----FVKFSPNGKYILAATLDNTLKLWD 224
           L  L    N  +S          P        + D   ++W 
Sbjct: 343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (256), Expect = 2e-26
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 18/138 (13%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK------------FEKTISGHK 69
           +  GH  +V SV F+ +G+ + S S D+ +K+W   +               E T  GHK
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308

Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC------NFNPQS 123
             +  VA + +   ++SGS D+ +  W+  SG  L  L+GH N V         +  P+ 
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 124 NLIVSGSFDESVRIWDVR 141
           N+  +GS D   RIW  +
Sbjct: 369 NVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.5 bits (233), Expect = 2e-23
 Identities = 68/240 (28%), Positives = 118/240 (49%), Gaps = 28/240 (11%)

Query: 12  NPKPNYVLKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG- 67
           NP     +   L     HT  V  VKFS +GE+LA+   +K  +++   DG     +S  
Sbjct: 44  NPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDD 102

Query: 68  -----------------HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGH 110
                              L I  V +S D + L +G++D+ ++IW++ + K +  L+GH
Sbjct: 103 SAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 162

Query: 111 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 170
              ++  ++ P  + +VSGS D +VRIWD+RTG+C  TL       +      DG  I +
Sbjct: 163 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222

Query: 171 SSYDGLCRIWDTASGQCLKTLIDDDNP------PVSFVKFSPNGKYILAATLDNTLKLWD 224
            S D   R+WD+ +G  ++ L  ++         V  V F+ +G+ +++ +LD ++KLW+
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (253), Expect = 3e-26
 Identities = 66/245 (26%), Positives = 104/245 (42%), Gaps = 46/245 (18%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 80
            L GH   V +      G  + S S D  +K+W A  GK  +T+ GH  G+       + 
Sbjct: 11  VLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 69

Query: 81  -------------------------------------SRLLVSGSDDKTLKIWELSSGKC 103
                                                 + +VSGS D TL++W++ +G+C
Sbjct: 70  IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129

Query: 104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR 163
           L  L GH   V C  ++     +VSG++D  V++WD  T  CL TL  H++ V ++ F  
Sbjct: 130 LHVLMGHVAAVRCVQYDG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-- 185

Query: 164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 223
           DG  +VS S D   R+WD  +G C+ TL    +              +++   D+T+K+W
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG---MELKDNILVSGNADSTVKIW 242

Query: 224 DSYPC 228
           D    
Sbjct: 243 DIKTG 247

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (246), Expect = 2e-25
 Identities = 51/193 (26%), Positives = 98/193 (50%), Gaps = 13/193 (6%)

Query: 41  WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS 100
            + S + D ++K+W         T+ GH       +   D   +VSGS D ++++W++ +
Sbjct: 149 RVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVWDVET 206

Query: 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVH 160
           G C+ TL GH +           N++VSG+ D +V+IWD++TG+CL+TL   +   SAV 
Sbjct: 207 GNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT 264

Query: 161 FNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP----PVSFVKFSPNGKYILAAT 215
             + + + +++SS DG  ++WD  +G+ ++ L+  ++      V  ++ S         +
Sbjct: 265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 324

Query: 216 LDNT----LKLWD 224
            + T    L + D
Sbjct: 325 RNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (225), Expect = 2e-22
 Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 14/176 (7%)

Query: 16  NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 75
                 TL GHT          +G  + S S D  I++W    G    T++GH+   S +
Sbjct: 166 TETCLHTLQGHTN--RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 223

Query: 76  AWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYV-FCCNFNPQSNLIVSGSFDES 134
               +  +LVSG+ D T+KIW++ +G+CL+TL+G + +           N +++ S D +
Sbjct: 224 ELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT 281

Query: 135 VRIWDVRTGKCLKTLPA-----HSDPVSAVHFNRDGSLIVSSSYDGL----CRIWD 181
           V++WD++TG+ ++ L           V  +  +    +    S +G       + D
Sbjct: 282 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (211), Expect = 2e-20
 Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 44/213 (20%)

Query: 54  WGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY 113
           W   + K  K + GH   +           +VSGSDD TLK+W   +GKCL+TL GH+  
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 114 VFCCNFNP--------------------------------------QSNLIVSGSFDESV 135
           V+                                                +VSGS D ++
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119

Query: 136 RIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 195
           R+WD+ TG+CL  L  H   V       DG  +VS +YD + ++WD  +  CL TL    
Sbjct: 120 RVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177

Query: 196 NPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC 228
           N          +G ++++ +LD ++++WD    
Sbjct: 178 NR---VYSLQFDGIHVVSGSLDTSIRVWDVETG 207

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (210), Expect = 3e-20
 Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 44/244 (18%)

Query: 19  LKFTLAGHTKAVSSVKFSPN--------------------------------------GE 40
              TL GHT  V S +   N                                       +
Sbjct: 49  CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK 108

Query: 41  WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS 100
            + S S D  +++W    G+    + GH   +       D R +VSG+ D  +K+W+  +
Sbjct: 109 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGAYDFMVKVWDPET 166

Query: 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVH 160
             CL TL+GH+N V+   F+     +VSGS D S+R+WDV TG C+ TL  H    S + 
Sbjct: 167 ETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224

Query: 161 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 220
                +++VS + D   +IWD  +GQCL+TL   +    +      N  +++ ++ D T+
Sbjct: 225 L--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282

Query: 221 KLWD 224
           KLWD
Sbjct: 283 KLWD 286

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 90.7 bits (223), Expect = 5e-22
 Identities = 20/189 (10%), Positives = 46/189 (24%), Gaps = 18/189 (9%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAW 77
                  +  F  + + L   S   L          F          I       +    
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235

Query: 78  SSDSRLLVSGS-------DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 130
              S    +G           +    +    + +  L+              +       
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295

Query: 131 FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 190
               +  +DV+T K    +    + ++ +  + D   ++    DG    +     +  +T
Sbjct: 296 EKGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351

Query: 191 LIDDDNPPV 199
           +  D  P V
Sbjct: 352 VETDKRPLV 360

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 78.8 bits (192), Expect = 8e-18
 Identities = 20/218 (9%), Positives = 56/218 (25%), Gaps = 20/218 (9%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
                  +       P           + I ++     K     +         A+ +DS
Sbjct: 132 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADS 190

Query: 82  RLLVSGSDDKTLKIWELSSGKC-------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
           + L   S        +                +             P+S    +G +D +
Sbjct: 191 KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 250

Query: 135 VRIW-------DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
                      D    + +  L +     S        +    +   G+   +D  + + 
Sbjct: 251 DMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK- 309

Query: 188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
           +  + ++    ++ ++ S + K ++    D  +  +  
Sbjct: 310 VTEVKNN----LTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 74.5 bits (181), Expect = 2e-16
 Identities = 12/143 (8%), Positives = 37/143 (25%), Gaps = 11/143 (7%)

Query: 21  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-------TISGHKLGIS 73
           F +     + +  K  P      +   D       +     +         +    L  S
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280

Query: 74  DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 133
                  +       +   L  +++ + K    +    N +     +     ++    D 
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRKDDG 336

Query: 134 SVRIWDVRTGKCLKTLPAHSDPV 156
            +  + +   +  +T+     P+
Sbjct: 337 KIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 68.0 bits (164), Expect = 5e-14
 Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 13  PKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 72
              +Y +   L       S         +   +    ++  +     K    ++  K  +
Sbjct: 262 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNL 317

Query: 73  SDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL 107
           +D+  S+D + ++   DD  +  + L   +  +T+
Sbjct: 318 TDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.4 bits (134), Expect = 4e-10
 Identities = 27/222 (12%), Positives = 57/222 (25%), Gaps = 20/222 (9%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSAD--KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 82
                +  V+   + +            + I+        +    +   +  +    + +
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY-RTGKAEKFEENLGNVFAMGVDRNGK 98

Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYV----------FCCNFNPQSNLIVSGSFD 132
             V  +D   +   +L +GK     +     +          F     P  +    G   
Sbjct: 99  FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158

Query: 133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT-- 190
           +++ ++D+   K       +S    A  F+ D   +   SY  L    D           
Sbjct: 159 QAIHVYDMEGRKIFAATTENSH-DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV 217

Query: 191 ----LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC 228
               +I       +  K  P      A   D       S P 
Sbjct: 218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPI 259

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 3e-05
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 7/133 (5%)

Query: 75  VAWS-SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 133
             +S  D  L+   S  +   I ++S    LK        +        + +       E
Sbjct: 8   EDFSPLDGDLIAFVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTRE 64

Query: 134 --SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
              + I+D RTGK  +    +   V A+  +R+G   V ++        D  +G+     
Sbjct: 65  GDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 123

Query: 192 IDDDNPPVSFVKF 204
              +     F   
Sbjct: 124 RSREAMITDFTIS 136

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.5 bits (90), Expect = 2e-04
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD--NTLK 221
           DG LI   S      I D +    LK     +   + +V+   + K          + L 
Sbjct: 14  DGDLIAFVSRGQA-FIQDVSGTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTREGDFLG 69

Query: 222 LWD 224
           ++D
Sbjct: 70  IYD 72

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.3 bits (209), Expect = 4e-20
 Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 8/170 (4%)

Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSRL 83
             + +S   ++ +   +A    +  + I+     K+ +   +  H   ++ V W+ DS  
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 84  LVSGSDDKTLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
           +V+   D+   +W L     K    +   +    C  + P       GS    + I    
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 142 TGK----CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
                  C          V ++ ++ +  L+ + S D  CRI+     + 
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEV 175

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.7 bits (197), Expect = 2e-18
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 72  ISDVAWSSDSRLLVSGSDDKTLKIWELSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSG 129
           IS  AW+ D   +    ++  + I+E S  K   +  LK H+  V   ++ P SN IV+ 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 130 SFDESVRIWDVRTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ- 186
             D +  +W ++    K    +   +     V +  +       S   +  I        
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 187 --CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY 226
               K +       V  + + PN   + A + D   +++ +Y
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.7 bits (171), Expect = 6e-15
 Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 6/184 (3%)

Query: 7   PSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 66
           P+   +  P   L F  +     V  V FS NG  +A  S D  + +  A       T++
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240

Query: 67  GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI 126
              L +  V + ++S L+ +G D     ++   S     +  G  +     +    +   
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFP-VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 299

Query: 127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG----SLIVSSSYDGLCRIWDT 182
              + D+                  H + VS +     G    S   ++  DG   IWD 
Sbjct: 300 RFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

Query: 183 ASGQ 186
            S +
Sbjct: 359 RSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.9 bits (156), Expect = 6e-13
 Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 26/233 (11%)

Query: 16  NYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISGHKLGIS 73
            +V    L  H   V+ V ++P+   + +   D+   +W       K    I        
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 74  DVAWSSDSRLLVSGSDDKTLKIWELSSGK----CLKTLKGHSNYVFCCNFNPQSNLIVSG 129
            V W+ + +    GS  + + I           C    K   + V   +++P S L+ +G
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159

Query: 130 SFDESVRIWDVRTGK------------------CLKTLPAHSDPVSAVHFNRDGSLIVSS 171
           S D   RI+     +                   +    +    V  V F+ +GS +   
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219

Query: 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           S+D    + D      + TL  +  P    V F      ++AA  D    L+ 
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPL-LAVTFITESS-LVAAGHDCFPVLFT 270

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.9 bits (156), Expect = 7e-13
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 152 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKY 210
             +P+S   +N+D + I     +    I++ +  +      + + N  V+ V ++P+   
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 211 ILAATLDNTLKLWDSYPCLPK 231
           I+    D    +W       K
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWK 86

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.4 bits (147), Expect = 8e-12
 Identities = 24/175 (13%), Positives = 54/175 (30%), Gaps = 7/175 (4%)

Query: 54  WGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNY 113
                G+     S     +  V +S++   +   S D T+ + +      + TL   +  
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245

Query: 114 VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 173
           +    F  +S+L+ +G  D    ++   +     +     D           +     + 
Sbjct: 246 LLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 304

Query: 174 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY----ILAATLDNTLKLWD 224
           D       +A+       +  +   VS +     GK          +D  + +WD
Sbjct: 305 DKKASSEGSAAAGAGLDSLHKN--SVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.9 bits (208), Expect = 6e-20
 Identities = 27/178 (15%), Positives = 60/178 (33%), Gaps = 2/178 (1%)

Query: 20  KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
           + TL GH  +V +        ++ + + DK+I+++ + + KF   +SGH  G+  + ++ 
Sbjct: 5   RTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 80  DSRLLVSGSDDKTLKIWELS-SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
              L+   +D               +      +              IV+GS D ++ +W
Sbjct: 64  GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN 196
            +     +       D     H   +    V      +  +   +    +      DN
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.8 bits (205), Expect = 2e-19
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG 165
           TL+GH   V  C    + N +++G+ D+ +R++D    K L  L  H   V A+ +   G
Sbjct: 7   TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
            L+  S+   +                 +       +    N KYI+  + DNTL +W 
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.5 bits (186), Expect = 5e-17
 Identities = 30/150 (20%), Positives = 65/150 (43%), Gaps = 4/150 (2%)

Query: 64  TISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS 123
           T+ GH   +       +   +++G+DDK +++++  + K L  L GH   V+   +    
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-G 64

Query: 124 NLIVSGSFDESVRIWDVRT--GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
            ++VSGS D +VR+WD++      +      +     +   ++   IV+ S D    +W 
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYI 211
                 +    ++ + P+ F     N  ++
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFV 154

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.4 bits (152), Expect = 2e-12
 Identities = 39/187 (20%), Positives = 72/187 (38%), Gaps = 5/187 (2%)

Query: 38  NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE 97
           +G  + S S D  + +W     K    +SGH   I    +  + +  +S S D T++IW+
Sbjct: 170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 229

Query: 98  LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVS 157
           L +G+ + TL+GH+  V     + +  +  +          +  + K       H   +S
Sbjct: 230 LENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF----SYHHTNLS 285

Query: 158 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 217
           A+        I+ S  +    I++  SG+ +   I  D   +  V F      + A   D
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKD 344

Query: 218 NTLKLWD 224
               L  
Sbjct: 345 GQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 4e-08
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSRLL 84
           H   +S++      + +  S ++    I+    GK     I      I  V +     L+
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLV 338

Query: 85  VSGSDDKTLKIWELS 99
            +   D    +  L 
Sbjct: 339 AAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 5e-07
 Identities = 46/265 (17%), Positives = 90/265 (33%), Gaps = 59/265 (22%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEKTISGHKLGISDVAW 77
               L+GH   V ++K++  G  ++ S+   +                    +   D+  
Sbjct: 45  FLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 104

Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVF---------------------C 116
             + + +V+GS D TL +W+L     +       +Y                        
Sbjct: 105 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 164

Query: 117 CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 176
              +   N++VSGS+D ++ +WDV   KCL  L  H+D + +  ++ +    +S+S D  
Sbjct: 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224

Query: 177 CRIWDTASGQCLKTLIDDDNP-------------------------------------PV 199
            RIWD  +G+ + TL                                            +
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNL 284

Query: 200 SFVKFSPNGKYILAATLDNTLKLWD 224
           S +        IL +  +N   +++
Sbjct: 285 SAITTFYVSDNILVSGSENQFNIYN 309

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (201), Expect = 2e-19
 Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 16/157 (10%)

Query: 77  WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
              D + +VS S D+T+K+W  S+ + ++TL GH   + C  +     L+VSGS D ++R
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIR 201

Query: 137 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QC 187
           +WD+  G CL+ L  H + V       D   IVS +YDG  ++WD  +           C
Sbjct: 202 LWDIECGACLRVLEGHEELV--RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259

Query: 188 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           L+TL++             +   I++++ D+T+ +WD
Sbjct: 260 LRTLVEHSGRVFR---LQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (190), Expect = 1e-17
 Identities = 46/244 (18%), Positives = 93/244 (38%), Gaps = 50/244 (20%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
             +  +K V       + + + S   D  IKIW     + ++ ++GH   +  + +    
Sbjct: 10  CRSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67

Query: 82  RLLVSGS--------------------------------------DDKTLKIWELSSGKC 103
            +  S                                         D+++ +W+++S   
Sbjct: 68  IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 104 L---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVH 160
           +   + L GH   V   +F+ +   IVS S D ++++W+  T + ++TL  H   ++ + 
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 185

Query: 161 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 220
           +     L+VS S D   R+WD   G CL+     +           + K I++   D  +
Sbjct: 186 Y--RDRLVVSGSSDNTIRLWDIECGACLRV---LEGHEELVRCIRFDNKRIVSGAYDGKI 240

Query: 221 KLWD 224
           K+WD
Sbjct: 241 KVWD 244

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 7e-06
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 11/66 (16%)

Query: 41  WLASSSADKLIKIW---------GAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK 91
            + S + D  IK+W                 +T+  H   +  + +  D   +VS S D 
Sbjct: 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD 287

Query: 92  TLKIWE 97
           T+ IW+
Sbjct: 288 TILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 5e-04
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 54
           TL  H+  V  ++F      + SSS D  I IW
Sbjct: 262 TLVEHSGRVFRLQFDEF--QIVSSSHDDTILIW 292

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (199), Expect = 8e-19
 Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 2/116 (1%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL 84
             T  + S+ + P GEWLA       +++         +    H+  +  + ++   +  
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCVLSLKFAYCGKWF 280

Query: 85  VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 140
           VS   D  L  W    G  +      S+ V  C+ +     IV+GS D+   +++V
Sbjct: 281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (185), Expect = 6e-17
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 1/72 (1%)

Query: 110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV 169
           H + V    F       VS   D  +  W    G  +      S  V +   + D   IV
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIV 322

Query: 170 SSSYDGLCRIWD 181
           + S D    +++
Sbjct: 323 TGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 3e-16
 Identities = 41/259 (15%), Positives = 74/259 (28%), Gaps = 48/259 (18%)

Query: 10  SSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 69
           S     + V +         + S K  P+G  L        + IW               
Sbjct: 80  SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139

Query: 70  LGIS--------------------------------------------DVAWSSDSRLLV 85
              +                                             +  S+D   L 
Sbjct: 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199

Query: 86  SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
           +G  D T++ W+L  G+ L+     ++ +F   + P    +  G    +V +  V     
Sbjct: 200 TGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258

Query: 146 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 205
            +    H   V ++ F   G   VS+  D L   W T  G  +    +     V     S
Sbjct: 259 YQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS--SVLSCDIS 315

Query: 206 PNGKYILAATLDNTLKLWD 224
            + KYI+  + D    +++
Sbjct: 316 VDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 1e-12
 Identities = 26/201 (12%), Positives = 54/201 (26%), Gaps = 6/201 (2%)

Query: 15  PNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-----GHK 69
           P +  +     H + V +V  S     + +      +K+W       +  +S        
Sbjct: 39  PRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD 97

Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
             I       D   L+ G +  TL IW+L++       +  S+   C       +  V  
Sbjct: 98  NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCF 157

Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 189
           S      I                    A   +         +      +      +  +
Sbjct: 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217

Query: 190 TLIDDDNPPVSFVKFSPNGKY 210
               D    +  + + P G++
Sbjct: 218 LQQHDFTSQIFSLGYCPTGEW 238

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 2e-12
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 21  FTLAGHTKAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 79
           F  A  +K   S   + +G+        D LI        +   T+  H   +  V  S+
Sbjct: 3   FQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISN 61

Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTL-----KGHSNYVFCCNFNPQSNLIVSGSFDES 134
            +R + +G     +K+W++S       +         NY+  C   P    ++ G    +
Sbjct: 62  PTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120

Query: 135 VRIWDVRTGKC 145
           + IWD+     
Sbjct: 121 LSIWDLAAPTP 131

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-10
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 6/108 (5%)

Query: 125 LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 184
             V    D  +     R  + + TL  H + V AV  +     + +    G  ++WD + 
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISH 81

Query: 185 GQCLKTLIDDDNP----PVSFVKFSPNGKYILAATLDNTLKLWDSYPC 228
                 +   D       +   K  P+G  ++     +TL +WD    
Sbjct: 82  PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 8e-06
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 152 HSDPVSAVHFNRDGSL-IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 210
            S P  + H   DG +  V    D L         + + TL   +   V  V  S   ++
Sbjct: 8   GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGE--VVCAVTISNPTRH 65

Query: 211 ILAATLDNTLKLWD 224
           +        +K+WD
Sbjct: 66  VYTGG-KGCVKVWD 78

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (200), Expect = 8e-19
 Identities = 33/228 (14%), Positives = 73/228 (32%), Gaps = 43/228 (18%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG------AYDGKFEKTISGHKLGISDV 75
           +    ++  +SV  S  G  +A+   +  ++I         Y+ + + ++  +   I  V
Sbjct: 179 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237

Query: 76  AWSSDSRLLVSGSDDKTLKIW----------------ELSSGKCLKTLKGHSNYVFCCNF 119
            +S    LL    D  +                       S +       HS++V   +F
Sbjct: 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297

Query: 120 NPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVS----AVHFNRDGSLIVSSSYDG 175
           N     + S  +D  +R WDV+T + + TL  H D +      +  +  G  +       
Sbjct: 298 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357

Query: 176 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 223
           +  +                         +   + +    LD +++ +
Sbjct: 358 VKFLKKGWRSGM----------------GADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.6 bits (176), Expect = 2e-15
 Identities = 28/202 (13%), Positives = 57/202 (28%), Gaps = 49/202 (24%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GHKLGISDVAW- 77
            H   + SV    +  +  S S D  +K+W       E           HK G+  V   
Sbjct: 12  AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 78  ------SSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQS-------- 123
                 + +  L+ + S    L  + ++     K +      +   +    S        
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 124 -------NLIVSGSFDESVRIWDVRTGK------------------CLKTLPAHSDPVSA 158
                  + +V+     +  IW                         +++    S   ++
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 159 VHFNRDGSLIVSSSYDGLCRIW 180
           V  +  G LI +   +G  +I 
Sbjct: 190 VDISERG-LIATGFNNGTVQIS 210

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (165), Expect = 5e-14
 Identities = 25/207 (12%), Positives = 50/207 (24%), Gaps = 48/207 (23%)

Query: 67  GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC----LKTLKGH---------SNY 113
            H   I  V+  +     VS S D  LK+W+           K+                
Sbjct: 12  AHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 114 VFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDG-------- 165
                   +  L+ + SF   +  + +      K +      +      +          
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 166 -------SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSF 201
                    +V++   G   IW           +  +  P                  + 
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 202 VKFSPNGKYILAATLDNTLKLWDSYPC 228
           V  S  G  I     + T+++ +    
Sbjct: 190 VDISERG-LIATGFNNGTVQISELSTL 215

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.7 bits (153), Expect = 2e-12
 Identities = 21/153 (13%), Positives = 47/153 (30%), Gaps = 29/153 (18%)

Query: 103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC------LKTLPAHSDPV 156
                K H   +F  +     +  VS S D  +++WD +            +   H   +
Sbjct: 6   TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 157 SAVHF-------NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF-------- 201
             V           +  L+ ++S+ G    +        K +I +    +          
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 202 -VKFSPNG-----KYILAATLDNTLKLWDSYPC 228
            +K+  +        ++A  +  T  +W  +P 
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 156

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 3e-10
 Identities = 34/249 (13%), Positives = 83/249 (33%), Gaps = 55/249 (22%)

Query: 30  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG----------ISDVAWSS 79
            +  + +     +A++S    +  +        K +   KL              + W +
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129

Query: 80  DS-----RLLVSGSDDKTLKIWELSSGK------------------CLKTLKGHSNYVFC 116
            +       LV+     T  IW+                        +++    S +   
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189

Query: 117 CNFNPQSNLIVSGSFDESVRI------WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 170
            + +    LI +G  + +V+I        +   +   ++  +S+ + +V F+  GSL+  
Sbjct: 190 VDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248

Query: 171 SSYDG---LCRIWDTASGQCLKTLIDDDNP------------PVSFVKFSPNGKYILAAT 215
           +          +++T  G+ + +L    +              V  + F+ +G+ + +A 
Sbjct: 249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG 308

Query: 216 LDNTLKLWD 224
            D  L+ WD
Sbjct: 309 WDGKLRFWD 317

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 23/134 (17%), Positives = 40/134 (29%), Gaps = 19/134 (14%)

Query: 9   SSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 68
           S S P  +         H+  V S+ F+ +GE L S+  D  ++ W     +   T++ H
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 69  KLGISD----VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN 124
              I      +A       L          +  L  G                     + 
Sbjct: 331 CDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRSGMGADL------------NE 375

Query: 125 LIVSGSFDESVRIW 138
            +     D S+R +
Sbjct: 376 SLCCVCLDRSIRWF 389

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 79.0 bits (193), Expect = 6e-18
 Identities = 29/240 (12%), Positives = 65/240 (27%), Gaps = 46/240 (19%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSAD------------KLIKIWGAYDGKFEKTISGHKL-- 70
              +++ S   SP+G+ + ++                 ++++   DG   K +    +  
Sbjct: 86  EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR 145

Query: 71  GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHS------------------- 111
            +  +  + D  L V+G D       ++ +GK    L   +                   
Sbjct: 146 QVYLMRAADDGSLYVAGPDIY---KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQS 202

Query: 112 ------NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA-HSDPVSAVHFNRD 164
                        F        +          D++TGK      A  ++       +  
Sbjct: 203 PRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 262

Query: 165 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
               +          +D    + +K    D       V F   G  +      N L +++
Sbjct: 263 DPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTY--YCVAFDKKGDKLYLGGTFNDLAVFN 319

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 78.6 bits (192), Expect = 8e-18
 Identities = 14/118 (11%), Positives = 39/118 (33%), Gaps = 3/118 (2%)

Query: 75  VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDE 133
             +  D +   +          +L +GK         +   F    +P+    + G  + 
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR 273

Query: 134 SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 191
            +  +D++  K +K           V F++ G  +          +++  + + +K +
Sbjct: 274 -LAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 74.8 bits (182), Expect = 2e-16
 Identities = 24/238 (10%), Positives = 54/238 (22%), Gaps = 49/238 (20%)

Query: 33  VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSD-SRLLVSGSDD 90
                  E++  ++    + +         K+     K G      + D     V  +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 91  KTLKIWELSSGKCLKTL------KGHSNYVFCCNFNPQSNLIVSGSFDES---------- 134
             +   +L + K                 ++    +P    + +                
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 135 --VRIWDVRTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 190
             + ++    G   K +        V  +    DGSL V+          D  +G+    
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD---IYKMDVKTGKYTVA 178

Query: 191 LIDDDNP------------------------PVSFVKFSPNGKYILAATLDNTLKLWD 224
           L   +                            +  +F  + +    A L       D
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 74.0 bits (180), Expect = 4e-16
 Identities = 16/135 (11%), Positives = 44/135 (32%), Gaps = 3/135 (2%)

Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDSRLL 84
            +   +  +F  + +  A++             GK   +  +           S      
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 266

Query: 85  VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK 144
           + G  +  L  ++L   K +K      +  +C  F+ + + +  G     + +++  T +
Sbjct: 267 IYGVLN-RLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324

Query: 145 CLKTLPAHSDPVSAV 159
            +K +      +S  
Sbjct: 325 KVKNIKLPGGDMSTT 339

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 65.5 bits (158), Expect = 3e-13
 Identities = 16/166 (9%), Positives = 41/166 (24%), Gaps = 11/166 (6%)

Query: 75  VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK-GHSNYVFCCNFNPQSN-LIVSGSFD 132
            A  +    ++  +    L + +++S    K+               P +    V  +  
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 133 ESVRIWDVRTGKCLKTLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 186
             +   D+ T K                 + +   + DG  + ++               
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 187 CLKTLIDDDN---PPVSFVKFSPNGKYILAATLDNTLKLWDSYPCL 229
               +    +            P   Y++ A  D +L +       
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYK 167

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 78.7 bits (192), Expect = 8e-18
 Identities = 24/205 (11%), Positives = 51/205 (24%), Gaps = 28/205 (13%)

Query: 8   SSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTI 65
             +         +         ++   +S     L   +    I       G   F   +
Sbjct: 175 FGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 234

Query: 66  SGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL 125
                      W       V+                                   Q + 
Sbjct: 235 EALTEAERADGWRPGGWQQVAYHRALDRIYL----------------------LVDQRDE 272

Query: 126 IVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTA 183
               +    V + D +TG+ L         + +++ ++D    L   S+ D    I D  
Sbjct: 273 WRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331

Query: 184 SGQCLKTLIDDDNPPVSFVKFSPNG 208
           SG+ L+++    + P   +  +  G
Sbjct: 332 SGEELRSVNQLGHGP-QVITTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.9 bits (151), Expect = 3e-12
 Identities = 27/222 (12%), Positives = 55/222 (24%), Gaps = 32/222 (14%)

Query: 7   PSSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 66
               +  +   V        T   +      +G     +   +            E    
Sbjct: 136 LEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT----EVFHP 191

Query: 67  GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC--LKTLKGHSNYVFCCNFNPQSN 124
             +  I+  A+S  +  LV  +    +   +LSSG    L  ++  +       + P   
Sbjct: 192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 251

Query: 125 LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 184
             V+                                           +      + D  +
Sbjct: 252 QQVAYHRALDRIYL----------------------LVDQRDEWRHKTASRFVVVLDAKT 289

Query: 185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAAT--LDNTLKLWD 224
           G+ L     +    +  +  S + K +L A    D TL + D
Sbjct: 290 GERLAKF--EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHD 329

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.0 bits (133), Expect = 5e-10
 Identities = 21/181 (11%), Positives = 49/181 (27%), Gaps = 33/181 (18%)

Query: 75  VAWSSDSRLL-----VSGSDDKTLKIWELSSGKCLKTLKGHS----------NYVFCCNF 119
            A + D+R +        +      + +  +G+ +  + G            +++   + 
Sbjct: 7   EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHAST 66

Query: 120 NPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLI---------VS 170
               + I  G   + V ++D  T      +     P   V      + +           
Sbjct: 67  V--FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124

Query: 171 SSYDGLCRIWDTASGQCLKTLIDDDNP------PVSFVKFSPNGKYIL-AATLDNTLKLW 223
            S      + D       + L   D        P +F     +G     A   + T ++ 
Sbjct: 125 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 184

Query: 224 D 224
            
Sbjct: 185 H 185

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 74.6 bits (181), Expect = 2e-16
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAV 159
           G   +   GH+  +   + +     + S   +  +  WD+ TG   +  P  H+  ++ +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 160 HFNRDGSLIVSSSYDGLCRIWDTASG 185
                G L   S  D L  +    SG
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.2 bits (172), Expect = 3e-15
 Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 59  GKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL-KGHSNYVFCC 117
           G  ++   GH   I+ ++ S+D + L S   +  +  W++S+G   +     H+  +   
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 118 NFNPQSNLIVSGSFDESVRIWDVRTGKC 145
               + +L      D  +++        
Sbjct: 62  KTTSKGDLFTVSWDDH-LKVVPAGGSGV 88

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.9 bits (153), Expect = 1e-12
 Identities = 12/62 (19%), Positives = 27/62 (43%)

Query: 143 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 202
           G   +    H+  ++A+  + DG  + S+  +G    WD ++G   +   D     ++ +
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 203 KF 204
           K 
Sbjct: 62  KT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.0 bits (143), Expect = 2e-11
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 3/123 (2%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAW 77
           +     GH KA++++  S +G+ L S+ A+  I  W    G   +     H   I+ +  
Sbjct: 4   IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

Query: 78  SSDSRLLVSGSDDKTLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 135
           +S   L     DD    +    SG           S+       +   ++ V+  +    
Sbjct: 64  TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123

Query: 136 RIW 138
              
Sbjct: 124 IYS 126

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.8 bits (132), Expect = 7e-10
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVH--FNRDGSL 167
           H+  V C +++P +  + +GS D SV +W++        +   +  +S+V+     + + 
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282

Query: 168 IVSSSYDGLCRIWD 181
           IVS+  D   + W+
Sbjct: 283 IVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.7 bits (124), Expect = 6e-09
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 85  VSGSDDKTLKIWELSSGKCLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 140
            +GS D ++ +W ++       +    H+              IVS   D +++ W+V
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.0 bits (117), Expect = 6e-08
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 37  PNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLK 94
           P+   LA+ S D  + +W          I    H +   +     +   +VS   D  +K
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293

Query: 95  IWELS 99
            W + 
Sbjct: 294 FWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 1e-06
 Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 1/123 (0%)

Query: 103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN 162
                      V   N                  + +        +   H+  V+ V ++
Sbjct: 174 KTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 233

Query: 163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-PVSFVKFSPNGKYILAATLDNTLK 221
            D   + + S D    +W+         +I   +           N   I++A  D+ +K
Sbjct: 234 PDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIK 293

Query: 222 LWD 224
            W+
Sbjct: 294 FWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.001
 Identities = 9/41 (21%), Positives = 14/41 (34%)

Query: 14  KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 54
           KP+         H  +  +     N   + S+  D  IK W
Sbjct: 255 KPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.1 bits (81), Expect = 0.002
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 185 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           G   +     +   ++ +  S +GK + +A  +  +  WD
Sbjct: 2   GSIDQVRYGHNKA-ITALSSSADGKTLFSADAEGHINSWD 40

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.8 bits (179), Expect = 3e-16
 Identities = 36/257 (14%), Positives = 78/257 (30%), Gaps = 54/257 (21%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSS 79
               H+   +  K SP+G + AS      ++IW         + TI      + D++W S
Sbjct: 53  IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112

Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC----------------------- 116
           +S+ + +  + +                                                
Sbjct: 113 ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172

Query: 117 ----------------------CNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT------ 148
                                   +NP  +L  S   D ++ +++   G           
Sbjct: 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 232

Query: 149 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 207
              AHS  V  + ++ DG+ I S+S D   +IW+ A+ +  KT+          +     
Sbjct: 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 292

Query: 208 GKYILAATLDNTLKLWD 224
            + +++ + +  +   +
Sbjct: 293 KQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.8 bits (135), Expect = 3e-10
 Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 2/92 (2%)

Query: 97  ELSSGKCLKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP 155
           E S      +L   +          P  + I   +   SV    V +    +    HS  
Sbjct: 2   EFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQ 60

Query: 156 VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
            +    +  G    S    G  RIWDT     
Sbjct: 61  TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.1 bits (133), Expect = 5e-10
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 1/71 (1%)

Query: 75  VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
           +  +     +   +   ++    + S    +    HS+       +P      SG    +
Sbjct: 23  LGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGN 81

Query: 135 VRIWDVRTGKC 145
           VRIWD      
Sbjct: 82  VRIWDTTQTTH 92

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.9 bits (130), Expect = 1e-09
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 34  KFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSRLLVSGSDDKT 92
            +SP+G  +AS+SADK IKIW     K EKTI    ++    +      + LVS S +  
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 93  LKIWEL 98
           +     
Sbjct: 305 INFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 3e-09
 Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 3/98 (3%)

Query: 30  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
              +  +P G+ +   +    +           +  + H    +    S       SG  
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 90  DKTLKIWELSSG--KCLKTLKGHSNYVFCCNFNPQSNL 125
              ++IW+ +        T+   S  V   +++ +S  
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 145 CLKTLPAHSD-PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 203
              +LP  +      +     G  I   +   +       S    +   +  +   +  K
Sbjct: 8   LFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSV-YTVPVGSLTDTEIYTEHSHQ-TTVAK 65

Query: 204 FSPNGKYILAATLDNTLKLWDSYPC 228
            SP+G Y  +  +   +++WD+   
Sbjct: 66  TSPSGYYCASGDVHGNVRIWDTTQT 90

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 74.1 bits (180), Expect = 3e-16
 Identities = 18/136 (13%), Positives = 40/136 (29%), Gaps = 4/136 (2%)

Query: 68  HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKT-LKGHSNYVFCCNFNPQSNLI 126
             +         D       +    L   +L +G+     ++    + F    NP     
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255

Query: 127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 186
                   +  +D+     +K +P       +V+ + DGS +      G    +D  + +
Sbjct: 256 FG--AYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312

Query: 187 CLKTLIDDDNPPVSFV 202
               +    N  +S  
Sbjct: 313 KKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 67.1 bits (162), Expect = 8e-14
 Identities = 13/143 (9%), Positives = 40/143 (27%), Gaps = 6/143 (4%)

Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV 85
              A        + +    ++    +       G+         + +   + + +     
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-MDVFYFSTAVNPAKTR 254

Query: 86  SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC 145
           +      L+ ++L     +K +    +  +  N +   + +  G     +  +D  T + 
Sbjct: 255 AFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313

Query: 146 LKTLPAHSDP----VSAVHFNRD 164
              +    +      S   F RD
Sbjct: 314 KGQVDLPGNASMSLASVRLFTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.7 bits (153), Expect = 1e-12
 Identities = 25/233 (10%), Positives = 59/233 (25%), Gaps = 39/233 (16%)

Query: 26  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-----------EKTISGHKLGISD 74
             K++     SP+G+ LA   +   +++                    +        I+ 
Sbjct: 80  RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITM 139

Query: 75  VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC----------------- 117
           +AW+ D   L     D    + +  +G  ++     S                       
Sbjct: 140 LAWARDGSKLYGLGRDL--HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV 197

Query: 118 ------NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 171
                       +     ++   +   D+ TG+           V       + +   + 
Sbjct: 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-MDVFYFSTAVNPAKTRAF 256

Query: 172 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
               +   +D      +K +    +     V  S +G  +        L  +D
Sbjct: 257 GAYNVLESFDLEKNASIKRVPLPHSY--YSVNVSTDGSTVWLGGALGDLAAYD 307

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.1 bits (149), Expect = 4e-12
 Identities = 21/211 (9%), Positives = 60/211 (28%), Gaps = 25/211 (11%)

Query: 40  EWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS--DVAWSSD-SRLLVSGSDDKTLKIW 96
           +++ + +    + +        +K I+    G +      +        + +  ++L   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 97  ELSSGKCLKTLKGHS-----------------NYVFCCNFNPQSNLIVSGSFDESVRIWD 139
           +L +G+ L  +   +                   +       +  L         V ++D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 199
             T    K        ++ + + RDGS +     D    + D  +G  ++          
Sbjct: 122 AETLSRRKAFE-APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAE 178

Query: 200 SFVKFSPNGKYILAATLDNTLKLWDSYPCLP 230
           ++    P+   +      + +     Y    
Sbjct: 179 TY--AQPDVLAVWNQHESSGVMATPFYTARK 207

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.6 bits (93), Expect = 7e-05
 Identities = 7/54 (12%), Positives = 16/54 (29%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 78
               +  SV  S +G  +    A   +  + A   + +  +         +A  
Sbjct: 277 PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 73.1 bits (178), Expect = 1e-15
 Identities = 20/186 (10%), Positives = 53/186 (28%), Gaps = 26/186 (13%)

Query: 8   SSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 67
            +++      V          +  + + +  G  + + ++  L     A     +  I G
Sbjct: 192 LAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDG 251

Query: 68  HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 127
           ++ G     + S    +V+   +    +                                
Sbjct: 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS-----------------------RS 288

Query: 128 SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS--LIVSSSYDGLCRIWDTASG 185
             +  E+        G+    +  +     A+   +DG+     +S+   +  I+D AS 
Sbjct: 289 CLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347

Query: 186 QCLKTL 191
           Q   ++
Sbjct: 348 QDQSSV 353

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 60.4 bits (145), Expect = 2e-11
 Identities = 16/182 (8%), Positives = 33/182 (18%), Gaps = 24/182 (13%)

Query: 66  SGHKLGISDVAWSSDSRLLVSGSDDKTLKIW--ELSSGKCLKTLKGHSNYV--------F 115
            G        A S  S + +      T + W      G  L    G    +         
Sbjct: 19  DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSD 78

Query: 116 CCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSA-------VHFNRDGS-L 167
               +        G   + V ++D  T   +  +     P  +       +      + L
Sbjct: 79  FALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACL 138

Query: 168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS------FVKFSPNGKYILAATLDNTLK 221
           +                    +         +           S       +        
Sbjct: 139 LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAA 198

Query: 222 LW 223
             
Sbjct: 199 AG 200

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.2 bits (175), Expect = 2e-15
 Identities = 20/158 (12%), Positives = 48/158 (30%), Gaps = 21/158 (13%)

Query: 89  DDKTLKIWELSSGKCLKTLKGHSNY----VFCCNFNPQSNLIVSGSFDESVRIWDVRTG- 143
           ++  ++ + L   +        S              +       S D  V +       
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 144 --------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 189
                         +        + PV+++ F+     + ++  DG+   W+  + + +K
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287

Query: 190 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP 227
                +    S VK + +   +  AT D+T K   +  
Sbjct: 288 NFAKFN--EDSVVKIACSDNILCLATSDDTFKTNAAID 323

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.6 bits (171), Expect = 6e-15
 Identities = 17/217 (7%), Positives = 59/217 (27%), Gaps = 14/217 (6%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWS 78
                   +S +K  P+   L  +S D  + ++          +     +K  +    + 
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 79  SDS-RLLVSGSDDKTLKIWELSS-GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 136
            ++   +  G+    +   +L             +N   C       + +++ S+D  + 
Sbjct: 66  DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125

Query: 137 IWDVRTGKCLKTLPAHSDPVSAV------HFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 190
           + D R          + +  +          + + S ++    +   + +     +    
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185

Query: 191 ---LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
                                +    +++D  + +  
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (162), Expect = 9e-14
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK---GHSNYVFCCNF 119
           +     K  ISD+       LL+  S D +L +++         L     + + + CCNF
Sbjct: 5   QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 120 NPQS-NLIVSGSFDESVRIWDVRTGKC 145
              +   I  G+    +   D+     
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPS 91

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (161), Expect = 1e-13
 Identities = 15/163 (9%), Positives = 42/163 (25%), Gaps = 20/163 (12%)

Query: 38  NGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISDVAWSSDSRLLVSGSDDKTL 93
           N   L     +  ++ +     + +                     +       S D  +
Sbjct: 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV 218

Query: 94  KIWELSSG---------------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 138
            +                     +        +  V    F+P+   + +   D  +  W
Sbjct: 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278

Query: 139 DVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 181
           +++T K +K      +  S V      +++  ++ D   +   
Sbjct: 279 NLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (160), Expect = 2e-13
 Identities = 16/141 (11%), Positives = 42/141 (29%), Gaps = 20/141 (14%)

Query: 35  FSPNGEWLASSSADKLIKIWGAYDG---------------KFEKTISGHKLGISDVAWSS 79
                E  A SS D  + +    D                +     +     ++ + +S 
Sbjct: 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261

Query: 80  DSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 139
             + L +   D  +  W L + K +K     +            N++   + D++ +   
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDDTFKTN- 319

Query: 140 VRTGKCLKTLPAHSDPVSAVH 160
                  +T+  ++  +  + 
Sbjct: 320 ---AAIDQTIELNASSIYIIF 337

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 3e-13
 Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC---LKTLPAHSDPVSA 158
           + ++  +   +Y+      P  +L++  S+D S+ ++          L     +  P+  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 159 VHFNRDGSLIVSSSYDGLCRIWDTASGQC 187
            +F  +  L +         +     G  
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSP 90

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 1e-11
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 8   SSSSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 67
           SS       + L          V+S++FSP  ++L ++ +D +I  W     K  K  + 
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291

Query: 68  HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVF 115
                S V  +    +L   + D T K          +T++ +++ ++
Sbjct: 292 FN-EDSVVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIY 334

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 4e-11
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 144 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSF 201
           + ++   A  D +S +      SL++ +S+DG   ++          L+       P+  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 202 VKFSPNGKYILA 213
             F  N    + 
Sbjct: 62  CNFIDNTDLQIY 73

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 72.5 bits (177), Expect = 2e-15
 Identities = 24/214 (11%), Positives = 51/214 (23%), Gaps = 21/214 (9%)

Query: 33  VKFSPNGEWL--ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD 90
                + E L   +      I +      + +  +      +     S+  R L     D
Sbjct: 24  QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRD 82

Query: 91  KTLKIWELSSGKC-----LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGK 144
             + + +L   +      +K      +         +    I    +     I D  T +
Sbjct: 83  GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 142

Query: 145 CLKTLPAHSDPV-----------SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLI 192
             K                    +A+  +      IV+    G   + D      LKT  
Sbjct: 143 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTE 202

Query: 193 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY 226
                 +       + +Y + A       +    
Sbjct: 203 ISAERFLHDGGLDGSHRYFITAANARNKLVVIDT 236

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 58.7 bits (141), Expect = 9e-11
 Identities = 22/216 (10%), Positives = 54/216 (25%), Gaps = 20/216 (9%)

Query: 28  KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----KTISGHKLGISDVAWSSDSR 82
            AV   + S +G +L     D  + +   +  +       K  S  +   +      + +
Sbjct: 62  YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121

Query: 83  LL-VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN------------LIVSG 129
                        I +  + +  K             ++P+               IV+ 
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181

Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDPV-SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 188
                + + D      LKT    ++        +      ++++      +        L
Sbjct: 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 241

Query: 189 KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
             + D             N  +     +  T  + D
Sbjct: 242 VAIEDTGGQTPH-PGRGANFVHPTFGPVWATSHMGD 276

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 23/151 (15%), Positives = 42/151 (27%), Gaps = 15/151 (9%)

Query: 65  ISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN 124
           I     G  D AW         G     +K    S    +         +          
Sbjct: 282 IGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK 341

Query: 125 LIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-----DGLCRI 179
            +     D   +   +        +      V    FN+DG+ +  S +     +    +
Sbjct: 342 AMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV 398

Query: 180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 210
            D  + + LK +I D+         +P GK+
Sbjct: 399 VDDKTLE-LKHVIKDER------LVTPTGKF 422

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 17/112 (15%)

Query: 14  KPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 73
                +  TL    +   SV    + + +    +D   K     +      I+  +  + 
Sbjct: 316 SQYLYVDATLNPEAEISGSV-AVFDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVV 371

Query: 74  DVAWSSDSRLLVSGS-------------DDKTLKIWELSSGKCLKTLKGHSN 112
              ++ D   +                 DDKTL++  +   + L T  G  N
Sbjct: 372 QGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDERLVTPTGKFN 423

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 4e-13
 Identities = 46/278 (16%), Positives = 79/278 (28%), Gaps = 65/278 (23%)

Query: 12  NPKPNYVLKFTLAGH-TKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFEKTI--- 65
           +            GH +  V++VKFSP    ++L S      + +WG    K   ++   
Sbjct: 47  DGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN 106

Query: 66  -----SGHKLGISDVAWSSDSRLLVSGSD--DKTLKIWELSSGKCLKTLKGHSNYVFCCN 118
                      ISD++W  + R L    +  D         SG  L  + GHS  +  C+
Sbjct: 107 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACH 166

Query: 119 FNPQSNLIVSGSFDESVR----IWDVRTGKCLKTLPAHSDPVSAVHFNR----------- 163
                 +      D+           +     +T       V  V F+            
Sbjct: 167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 226

Query: 164 -----------------------------------DGSLIVSSSYDGLCRIWDTASGQCL 188
                                              D     +   D   R+WD  + +C+
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 286

Query: 189 KTLIDDDNP-PVSFVKFSPNG-KYILAATLDNTLKLWD 224
           +    D        V     G   I++ +LD TL  ++
Sbjct: 287 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.5 bits (147), Expect = 8e-12
 Identities = 11/68 (16%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 76  AWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFC---CNFNPQSNLIVSGSFD 132
               DS+   +   D T+++W++++ KC++        +           +  I+S S D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 133 ESVRIWDV 140
            ++  +++
Sbjct: 318 GTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 1e-08
 Identities = 22/167 (13%), Positives = 56/167 (33%), Gaps = 16/167 (9%)

Query: 30  VSSVKFSPNGEWLASSSADK-LIKIWGAYDGKFEK--TISGHKLG-ISDVAWS--SDSRL 83
            + + + P    +A        ++     D K       +GH    ++ V +S    S+ 
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 84  LVSGSDDKTLKIWELSSGKCLKTL--------KGHSNYVFCCNFNPQSNLIV--SGSFDE 133
           L SG +   + +W  +  K   ++        +  +  +   +++ +   +       D 
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139

Query: 134 SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 180
                   +G  L  +  HS  ++A H  +   +   +  D    ++
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 186

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (101), Expect = 7e-06
 Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 15/134 (11%)

Query: 110 HSNYVFCCNFNPQSNLIVSGSFDES-VRIWDVRTGK--CLKTLPAH-SDPVSAVHF--NR 163
             N+    +++P +N I       + VR  D    K   +     H S  V+ V F   +
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-------PVSFVKFSPNGKYIL--AA 214
               + S    G   +W     +   ++  +          P+S + +   G+ +     
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135

Query: 215 TLDNTLKLWDSYPC 228
             DN          
Sbjct: 136 GRDNFGVFISWDSG 149

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 64.2 bits (155), Expect = 1e-12
 Identities = 14/156 (8%), Positives = 40/156 (25%), Gaps = 6/156 (3%)

Query: 75  VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
                 +   V+  D   + + +  S K +K +      V     +     ++    D  
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDAR 84

Query: 135 VRIWDVRTGKC-----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 189
           + + D+   +      +K         S+     +    ++ +Y               K
Sbjct: 85  IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144

Query: 190 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS 225
            ++      V    + P  +           +   +
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 180

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 55.3 bits (132), Expect = 1e-09
 Identities = 30/234 (12%), Positives = 75/234 (32%), Gaps = 47/234 (20%)

Query: 14  KPNYVLKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGI 72
           K    L  T  G    ++   +  +   ++ +++    + +  + D +    +   K   
Sbjct: 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 252

Query: 73  SDVA---------------WSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC 117
                                 D  + + G+D K    +   + K +  L+G        
Sbjct: 253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY---AWKKVAELQGQGGGSLFI 309

Query: 118 NFNPQSNLIV-------SGSFDESVRIWDVRTGKCLKTLPAHSD-------PVSAVH--F 161
             +P+S+ +             +SV ++D++       +   ++           V   +
Sbjct: 310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369

Query: 162 NRDGSLIVSSSY-----DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 210
           N+ G  +  S +          + D  + + LK ++ D  P +     +P GK+
Sbjct: 370 NKRGDEVWFSVWNGKNDSSALVVVDDKTLK-LKAVVKD--PRL----ITPTGKF 416

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.8 bits (102), Expect = 7e-06
 Identities = 17/202 (8%), Positives = 45/202 (22%), Gaps = 38/202 (18%)

Query: 28  KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSG 87
            AV   + S +G +L     D  I +   +  +  K                        
Sbjct: 62  YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV----------------------- 98

Query: 88  SDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCL 146
                           +K      +         +    I    +     I D  T +  
Sbjct: 99  --------------AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144

Query: 147 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 206
           + +      V    ++ +  +    +                  L++  +     V    
Sbjct: 145 QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG 204

Query: 207 NGKYILAATLDNTLKLWDSYPC 228
              ++     D++ + + +   
Sbjct: 205 AAPFLADGGWDSSHRYFMTAAN 226

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 16/123 (13%), Positives = 31/123 (25%), Gaps = 29/123 (23%)

Query: 19  LKFTLAGHTKAVSSVKFSPNGEWLA-------SSSADKLIKIWGAYDGKFEKTISGHK-- 69
               L G       +K  P    L         +   + + ++   +   +  +      
Sbjct: 295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW 354

Query: 70  -------LGISDVAWSSD-SRLLVSGS------------DDKTLKIWELSSGKCLKTLKG 109
                    +    ++     +  S              DDKTLK+  +     L T  G
Sbjct: 355 ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTG 414

Query: 110 HSN 112
             N
Sbjct: 415 KFN 417

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.0 bits (87), Expect = 6e-04
 Identities = 23/237 (9%), Positives = 53/237 (22%), Gaps = 41/237 (17%)

Query: 25  GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA--WSSDSR 82
                 SS        +  + +           +    K I   +    D          
Sbjct: 106 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV 165

Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV-- 140
             +  S +    I  +     +  +               +  +  G +D S R +    
Sbjct: 166 AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAA 225

Query: 141 --------------------------RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 174
                                       G+    +     PV +     DGS+ +  +  
Sbjct: 226 NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 285

Query: 175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-------LDNTLKLWD 224
                +       L+           F+K  P   ++   T       +  ++ ++D
Sbjct: 286 KNHPQYAWKKVAELQGQ----GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 338

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.5 bits (147), Expect = 7e-12
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 68  HKLGISDVAWSSDSRLLVSGSDDKTLKIWELSS-GKCLKTLKGHSNYVFCCNFNPQSNLI 126
                       +  L+ +GS D  + I+ +    K +K L  H + V    +    + +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTL 272

Query: 127 VSGSFDESVRIWDV 140
           VS   D  ++ W+V
Sbjct: 273 VSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.7 bits (137), Expect = 1e-10
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAV 159
             + LKT+ GH+  +     NP    ++SGS+D  +  W   +         HS+ + ++
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSL 52

Query: 160 HFNRDGSLIVSSSYDGLCRIW 180
             ++       S  D L    
Sbjct: 53  DNSKAQEYSSISWDDTLKVNG 73

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 4e-09
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 31  SSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
            + +     + +A+ S D  I I+      K  K ++ HK G++++ W + S  LVS   
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGA 277

Query: 90  DKTLKIW 96
           D  +K W
Sbjct: 278 DACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.3 bits (123), Expect = 1e-08
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 63  KTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQ 122
           KTISGH  GI+ +  +     L+SGS D  +  W  SS       + HSN +   + +  
Sbjct: 7   KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57

Query: 123 SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP 155
                    D        +     +   A ++ 
Sbjct: 58  QEYSSISWDDTLKVNGITKHEFGSQPKVASANN 90

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 1e-07
 Identities = 12/115 (10%), Positives = 31/115 (26%), Gaps = 1/115 (0%)

Query: 110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV 169
            S             L+      E            +  +        A     +  L+ 
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231

Query: 170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
           + S D    I+       +   ++     V+ + +      ++++  D  +K W+
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 2e-07
 Identities = 24/186 (12%), Positives = 52/186 (27%), Gaps = 20/186 (10%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 81
           T++GH K ++++  +P    L S S D  I  W +           H   I  +  S   
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ 58

Query: 82  RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 141
                         W+ +      T     +     + N      V  + D+ + +    
Sbjct: 59  EYSSI--------SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110

Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
                       +   +        + V        +++  +  +    L        S+
Sbjct: 111 ---GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY 167

Query: 202 VKFSPN 207
           +  SP+
Sbjct: 168 ISISPS 173

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 4e-07
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 142 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
             + LKT+  H+  ++A+  N     ++S SYDG    W ++S     +        +  
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHS------NLIVS 51

Query: 202 VKFSPNGKYI 211
           +  S   +Y 
Sbjct: 52  LDNSKAQEYS 61

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 54
            L  H   V+++ +      L SS AD  IK W
Sbjct: 253 ALNAHKDGVNNLLWETPS-TLVSSGADACIKRW 284

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 57.6 bits (137), Expect = 1e-10
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASG 185
           ++ S  +++ + DV + K   T+P  S+P+     + DG+ + V++++     I DTA+ 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 186 QC 187
             
Sbjct: 65  NV 66

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 55.3 bits (131), Expect = 9e-10
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-L 167
              + +       ++ +     +  +V + D  T K    +P   DP + +    DG  +
Sbjct: 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP-AGIAVTPDGKKV 258

Query: 168 IVSSSYDGLCRIWDTASGQCLKTLIDDDNP 197
            V+ S+     + DTA+     T+    NP
Sbjct: 259 YVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 54.9 bits (130), Expect = 1e-09
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 92  TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKTLP 150
           T+ + +  + K    +    +        P    + V+ SF  +V + D  T     T+ 
Sbjct: 225 TVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

Query: 151 AHSDPVSAVHF 161
              +P ++  F
Sbjct: 284 VGKNPYASGQF 294

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 53.3 bits (126), Expect = 4e-09
 Identities = 21/155 (13%), Positives = 53/155 (34%), Gaps = 2/155 (1%)

Query: 44  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSGK 102
           ++S    I +      K   TI            S D +++ V+ +    + I + ++  
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN 162
            + T+   S+            + V+     ++ + D  +     T+     P+      
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP 125

Query: 163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 197
               L V+++ D    + +T +   + T+    +P
Sbjct: 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP 160

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 51.4 bits (121), Expect = 2e-08
 Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 4/128 (3%)

Query: 85  VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTG 143
           ++ S+   + + +++S K   T+   SN       +P    + V+ +    V I D  T 
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 144 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 203
             + T+PA S P           + V++       + DT S     T+    +P    + 
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL--GLA 122

Query: 204 FSPNGKYI 211
            SP+GK +
Sbjct: 123 LSPDGKKL 130

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.9 bits (112), Expect = 3e-07
 Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 54  WGAYDGKFEKTISGHKLGISDVAWSSD-SRLLVSGSDDKTLKIWELSSGKCLKTLK 108
                 K    I       + +A + D  ++ V+ S   T+ + + ++     T+ 
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.2 bits (110), Expect = 4e-07
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 169 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 224
           +++S      + D  S +   T+    NP       SP+G  +  A    N + + D
Sbjct: 6   IANSESDNISVIDVTSNKVTATIPVGSNP--MGAVISPDGTKVYVANAHSNDVSIID 60

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 29/243 (11%), Positives = 67/243 (27%), Gaps = 48/243 (19%)

Query: 28  KAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVS 86
                   SP+G  +  +++    + I          T+                ++ V+
Sbjct: 32  SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVT 91

Query: 87  GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL 146
                TL + + +S     T+K   + +          L V+ + D++V + +  T   +
Sbjct: 92  NMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151

Query: 147 KTLPAHSDPVSAV--------------------------------------------HFN 162
            T+     P                                                   
Sbjct: 152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG 211

Query: 163 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLK 221
               +     Y     + DT + +    +    +P  + +  +P+GK +  A +  NT+ 
Sbjct: 212 TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP--AGIAVTPDGKKVYVALSFCNTVS 269

Query: 222 LWD 224
           + D
Sbjct: 270 VID 272

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 49.1 bits (115), Expect = 1e-07
 Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 6/109 (5%)

Query: 78  SSDSRLLVSGSDDKTLKIWELSSGKCLKTLK--GHSNYVFCCNFNPQSN-LIVSGSFDES 134
           S    + ++  + + + +W L+    L   +       V     +P    L V    +  
Sbjct: 1   SLKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFR 60

Query: 135 VRIWDVRTGKCLKTLPAHSDPVSA---VHFNRDGSLIVSSSYDGLCRIW 180
           V  + +       T  A S    +   +  +  G  +   SY+      
Sbjct: 61  VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 167 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGKYILAATL-DNTLKLWD 224
           + ++S       +W+      L      D P  V  +  SP+ +Y+      +  +  + 
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 21/212 (9%), Positives = 53/212 (25%), Gaps = 32/212 (15%)

Query: 30  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
           + +      G++  S+  +    +  A   + ++            A          G D
Sbjct: 178 LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG-D 236

Query: 90  DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVRTGKCLKT 148
            K   +      +  + +          N +P     I +G    +V +  +   K    
Sbjct: 237 SKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAID--KLDDL 293

Query: 149 LPAHSDPVSAVH-------------FNRDGSLIVSSSYDGLCRIWD---------TASGQ 186
                +    +              F+  G+   +   D     W+              
Sbjct: 294 FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVN 353

Query: 187 CLKTLIDDDNPP-----VSFVKFSPNGKYILA 213
            ++  +D    P             +GK+++ 
Sbjct: 354 YIRQKLDVQYQPGHNHASLTESRDADGKWLVV 385

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 19/133 (14%), Positives = 36/133 (27%), Gaps = 13/133 (9%)

Query: 83  LLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT 142
              SG     +++  + S + L  +      VF    N  S     G  +ES  I     
Sbjct: 13  GFWSGGHQGEVRVLGVPSMRELMRI-----PVF----NVDSAT-GWGITNESKEILG--G 60

Query: 143 GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 201
            +       H   +S      DG  L ++   +           +  K     +   +  
Sbjct: 61  DQQYLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHG 120

Query: 202 VKFSPNGKYILAA 214
           ++     K     
Sbjct: 121 LRLQKVPKTNYVF 133

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 22/221 (9%), Positives = 50/221 (22%), Gaps = 13/221 (5%)

Query: 12  NPKPNYVLKFTLAGHTKAVSS-----VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 66
           N +  + L+      T  V       +    +G   +  ++  +     A        + 
Sbjct: 114 NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173

Query: 67  GHKLGISDVAWSSDSRLLVSGS-DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL 125
                + +       +   S   + +       +       +    N           N 
Sbjct: 174 VDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNF 231

Query: 126 IVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 185
              G     V +      +  + +P   +P            I +        +      
Sbjct: 232 KTIGDSKVPV-VDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK- 289

Query: 186 QCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDS 225
             L  L +D       +   P  G   L  T D     + +
Sbjct: 290 --LDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT 328

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 43.7 bits (103), Expect = 9e-06
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 14/99 (14%)

Query: 127 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 186
            SG     VR+  V + + L  +P          FN D +     + +    I       
Sbjct: 15  WSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSATGWGITNESK-EILGGDQQ- 63

Query: 187 CLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 224
                 D  +P +S      +GKY+      +  +    
Sbjct: 64  --YLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIR 100

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 19/227 (8%), Positives = 64/227 (28%), Gaps = 28/227 (12%)

Query: 23  LAGHTKAVSSVKFSPNGEWLASSS------ADKLIKIWGAYDGKFEK------TISGHKL 70
           +  +   +++ +F P+G  +A             +  +   +G+ ++        +G ++
Sbjct: 36  IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRM 95

Query: 71  GISDVAWSSDSRLLVS---GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 127
                 +  D  L++S        ++          +  +  +        F     +I 
Sbjct: 96  FTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIG 155

Query: 128 SGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD------ 181
             +F+           +    +  +S     +                +  I D      
Sbjct: 156 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQ 215

Query: 182 ----TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 224
                  G+ L+      +        + +G+ I   +   ++ +++
Sbjct: 216 IYSTDLDGKDLRKHTSFTDYYPRH--LNTDGRRI-LFSKGGSIYIFN 259

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 24/213 (11%), Positives = 50/213 (23%), Gaps = 14/213 (6%)

Query: 10  SSNPKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 69
           + NP   + +  T +  +   ++         +           W   +    + +   +
Sbjct: 223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ 282

Query: 70  LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 129
                     D            L   +         +            +  S   +  
Sbjct: 283 NYSVMDICDYDES----SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIIS 338

Query: 130 SFDESVRIWDVRTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSSSYDG------LCRI-- 179
           + +    I   +  K   T         +       D    +S+ Y G      L +I  
Sbjct: 339 NEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL 398

Query: 180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 212
            D     CL   ++ +      V FS   KY  
Sbjct: 399 SDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ 431

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 15/134 (11%), Positives = 40/134 (29%), Gaps = 5/134 (3%)

Query: 72  ISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 131
           + ++A + D  + V+  +     I  ++     +        V    F    +L+ +G  
Sbjct: 30  LENLASAPDGTIFVTNHEVGE--IVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWN 87

Query: 132 DESVRIWDVR---TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCL 188
            +S+ +  +               +  ++ +    D   + + SY G   + D       
Sbjct: 88  ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 147

Query: 189 KTLIDDDNPPVSFV 202
             L        +  
Sbjct: 148 IWLEHPMLARSNSE 161

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 22/208 (10%), Positives = 62/208 (29%), Gaps = 15/208 (7%)

Query: 30  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD 89
           + ++  +P+G    ++     I      DG  +   +  +  +S +A++S+  L+ +G +
Sbjct: 30  LENLASAPDGTIFVTNHEVGEIVSITP-DGNQQ-IHATVEGKVSGLAFTSNGDLVATGWN 87

Query: 90  DKTLKIWELS---SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL 146
             ++ +  L               + ++        +  + + S+  ++ + DV      
Sbjct: 88  ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 147

Query: 147 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-------CRIWDTASGQCLKTLIDDDNPPV 199
             L       S        +  +    + L         +         K    +     
Sbjct: 148 IWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ 207

Query: 200 SF---VKFSPNGKYILAATLDNTLKLWD 224
           +      F   G    A  + N++    
Sbjct: 208 TNIDDFAFDVEGNLYGATHIYNSVVRIA 235

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 21  FTLAGHTKAVSSVKFSPNGEWLASSSAD---KLIKIWGAYDGKFEKTISGHKLGISDVAW 77
             +   T    +   +PNG  +  SS+     ++ +    DG+F+  +      +   AW
Sbjct: 207 VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAW 265

Query: 78  S 78
           S
Sbjct: 266 S 266

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 25/213 (11%), Positives = 60/213 (28%), Gaps = 11/213 (5%)

Query: 22  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSS 79
            +    + + S  +SP+G  LA  + +                + ++         A+S 
Sbjct: 33  VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 92

Query: 80  DSRLLV-----SGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 134
           D   L      +GS +  +        + +   + ++        +         +    
Sbjct: 93  DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ 152

Query: 135 VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 194
           V   ++  G   +     S    A   +    +++ SS  G   I           ++  
Sbjct: 153 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL-S 211

Query: 195 DNPPVSFVKFSPNGKYILAATLDNT---LKLWD 224
                     +PNG  ++ ++       L L  
Sbjct: 212 STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS 244

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.79
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.78
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.64
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.59
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.58
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.5
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.43
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.41
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.37
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.37
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.36
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.36
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.33
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.3
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.3
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.23
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.18
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.15
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.11
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.05
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.02
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.93
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.89
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.89
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.83
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.82
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.72
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.68
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.53
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.18
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.01
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.93
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.78
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.66
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.43
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.36
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.35
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.2
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.05
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.05
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.87
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.77
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.68
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.52
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.45
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.31
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.23
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.04
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.69
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.46
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.28
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.23
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.99
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.89
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.63
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.44
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.13
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.12
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.9
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	93.21
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.2
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	93.07
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	89.72

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.1e-38  Score=238.44  Aligned_cols=211  Identities=23%  Similarity=0.421  Sum_probs=182.5

Q ss_pred             CCccceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCc
Q psy4391          13 PKPNYVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKT   92 (231)
Q Consensus        13 ~~~~~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~   92 (231)
                      ++.+...+.+|+||.+.|++++|+|++++|++|+.||.|++||..+++....+..|...|.+++|+|+++++++++.|+.
T Consensus        41 ~~~~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          41 GRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             CCCCCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             cccceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccce
Confidence            44556677889999999999999999999999999999999999999998889888889999999999998888887777


Q ss_pred             EEEEeC--------------------------------------------------------------------------
Q psy4391          93 LKIWEL--------------------------------------------------------------------------   98 (231)
Q Consensus        93 i~~~d~--------------------------------------------------------------------------   98 (231)
                      +++|+.                                                                          
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence            777653                                                                          


Q ss_pred             -------------CCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec--cCCCCCeEEEEEcC
Q psy4391          99 -------------SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNR  163 (231)
Q Consensus        99 -------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~  163 (231)
                                   ++++.+..+..|...+.+++|+|+++++++++.|+.+++||++.......+  ..+...+.+++|+|
T Consensus       201 ~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~  280 (340)
T d1tbga_         201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK  280 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS
T ss_pred             EeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC
Confidence                         223333334456777889999999999999999999999999988776554  34566799999999


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         164 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       164 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      ++++|++|+.||.|++||+.+++.+..+.. +..+|.+++|+|++++|++|+.||.|+|||
T Consensus       281 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         281 SGRLLLAGYDDFNCNVWDALKADRAGVLAG-HDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEECCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999999988877654 456899999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.5e-38  Score=236.44  Aligned_cols=207  Identities=25%  Similarity=0.427  Sum_probs=184.0

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcE--EEEEecccccEEEEEECCCCCEEEEecC--CCcEEEE
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTISGHKLGISDVAWSSDSRLLVSGSD--DKTLKIW   96 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~g~i~~~   96 (231)
                      ..+.+|...|++++|+|+|++|++|+.||.|++|+..+...  ...+..|..+|.+++|+|+++++++++.  +..+++|
T Consensus        52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~  131 (311)
T d1nr0a1          52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF  131 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccc
Confidence            34568999999999999999999999999999999977653  3556778889999999999999988875  4569999


Q ss_pred             eCCCceeeeeecCCCcceEEEEECCCCCE-EEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                      ++++++....+.+|...|.+++|+|++++ +++|+.|+.|++||+++++....+..|..+|.++.|+|+++++++++.|+
T Consensus       132 ~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~  211 (311)
T d1nr0a1         132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG  211 (311)
T ss_dssp             ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccc
Confidence            99999888889999999999999999885 78899999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCceeeeeec------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         176 LCRIWDTASGQCLKTLID------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~------~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .+++||+.+++....+..      .+...|.+++|+|+|++|++|+.||.|+|||...
T Consensus       212 ~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            999999998876655432      2356799999999999999999999999999643

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.5e-37  Score=229.23  Aligned_cols=207  Identities=36%  Similarity=0.643  Sum_probs=172.2

Q ss_pred             ceeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEE---------------------
Q psy4391          17 YVLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---------------------   75 (231)
Q Consensus        17 ~~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~---------------------   75 (231)
                      ...+++|.||.+.|++++|+|++++|++|+.||.|++||..+++....+.+|...|.++                     
T Consensus         7 ~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1           7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccc
Confidence            34456788999999999999999999999999999999998877666666555555444                     


Q ss_pred             ---------------------EECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCc
Q psy4391          76 ---------------------AWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES  134 (231)
Q Consensus        76 ---------------------~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  134 (231)
                                           .|+|+++.+++++.|+.+++||+++++....+..+...+.+++++|++.++++++.|+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  166 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT  166 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCe
Confidence                                 44555566777888889999999988888888888888888999999998888888888


Q ss_pred             EEEEECCCCc--------------------------------------------------------------eeeeccCC
Q psy4391         135 VRIWDVRTGK--------------------------------------------------------------CLKTLPAH  152 (231)
Q Consensus       135 i~v~d~~~~~--------------------------------------------------------------~~~~~~~~  152 (231)
                      +++|++++++                                                              .+..+..|
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  246 (317)
T d1vyhc1         167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  246 (317)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence            8888775433                                                              22333456


Q ss_pred             CCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Q psy4391         153 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD  224 (231)
Q Consensus       153 ~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd  224 (231)
                      ..+|.+++++|++++|++++.||.|++||+.+++.+..+.. +..+|.+++|+|++++|++|+.||.|+|||
T Consensus       247 ~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC-CSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            77889999999999999999999999999999988877654 456799999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-35  Score=224.00  Aligned_cols=207  Identities=20%  Similarity=0.319  Sum_probs=178.7

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeC--CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCE-EEEecCCCcEEE
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSA--DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLKI   95 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~g~i~~   95 (231)
                      .+..+.+|...|.+++|+|++++|++++.  +..+++|+..+++....+.+|...|.+++|+|++++ +++++.|+.|++
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i  173 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI  173 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred             cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            44567789999999999999999988875  456899999888887888888889999999999885 788999999999


Q ss_pred             EeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec-------cCCCCCeEEEEEcCCCCeE
Q psy4391          96 WELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-------PAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus        96 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l  168 (231)
                      ||+++++....+..|...+.++.++|+++++++++.|+.+++||++++.....+       .+|.+.|.+++|+|++++|
T Consensus       174 ~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l  253 (311)
T d1nr0a1         174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI  253 (311)
T ss_dssp             EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEE
Confidence            999999999999999999999999999999999999999999999988765544       3577899999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         169 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       169 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ++|+.||.|++||+++++++..+..........+.+.+++++|++++.||.|++||.
T Consensus       254 ~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         254 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence            999999999999999999888776544322233344455678999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=216.22  Aligned_cols=204  Identities=23%  Similarity=0.374  Sum_probs=184.4

Q ss_pred             eeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      .....+..|...+..+.|+|++.++++++.++.+++|+..+++.......|...+.+++|+++++.+++++.|+.+++||
T Consensus       132 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d  211 (337)
T d1gxra_         132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD  211 (337)
T ss_dssp             EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34456678899999999999999999999999999999999988888888889999999999999999999999999999


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeE
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  177 (231)
                      +++++.+..+. +...+.+++|+|+++.+++++.++.+++||++.++.. ....|...|.+++|+|++++|++++.||.|
T Consensus       212 ~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i  289 (337)
T d1gxra_         212 LREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLL  289 (337)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCeE
Confidence            99988877665 5678999999999999999999999999999988764 446788999999999999999999999999


Q ss_pred             EEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ++||+.+++.+....  +...|.+++|+|+|++|++++.||.|+|||.
T Consensus       290 ~iwd~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         290 NAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEECCCCCEEEEcc--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999999998776653  4567899999999999999999999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-34  Score=223.55  Aligned_cols=202  Identities=17%  Similarity=0.224  Sum_probs=169.8

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc--EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee-
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC-  103 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~-  103 (231)
                      .++|++++|+|+|++||+|+.||.|++|+..+++  ....+.+|..+|.+++|+|++++|++++.|+.|++||+.++.. 
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            4689999999999999999999999999997665  4556788999999999999999999999999999999987653 


Q ss_pred             -eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce----eeeccCCCCCeEEEEEcCCCCeEEEEecCCeEE
Q psy4391         104 -LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       104 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  178 (231)
                       ...+..+...+.+++|+|+++.+++++.|+.+++|++.....    ......|...|.+++|+|++++|++|+.|+.++
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence             344556778899999999999999999999999998876543    233456788999999999999999999999999


Q ss_pred             EEeCCCCcee-----------------eeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q psy4391         179 IWDTASGQCL-----------------KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       179 v~d~~~~~~~-----------------~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~  228 (231)
                      +||.......                 ......+...+..++|+|+|++|++++.|+.|++||..+.
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~  233 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  233 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc
Confidence            9998654211                 1111234456889999999999999999999999997443

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-33  Score=212.51  Aligned_cols=205  Identities=18%  Similarity=0.357  Sum_probs=182.7

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCC--cEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      .....+|...|.+++|+|++++|++|+.||.|++|+....  +....+..|...+..++|+|++..+++++.++.+++|+
T Consensus        90 ~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~  169 (337)
T d1gxra_          90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD  169 (337)
T ss_dssp             EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3445679999999999999999999999999999998644  44556677888899999999999999999999999999


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeE
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  177 (231)
                      +.+++.......|...+.+++|++++..+++++.|+.+++||+++++.+..+. +...|.+++|+|+++++++++.|+.+
T Consensus       170 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i  248 (337)
T d1gxra_         170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNV  248 (337)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccc
Confidence            99999888888889999999999999999999999999999999998777654 67899999999999999999999999


Q ss_pred             EEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         178 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ++||+.+++....  ..+...|..++|+|+|++|++++.||.|++||...
T Consensus       249 ~i~d~~~~~~~~~--~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~  296 (337)
T d1gxra_         249 EVLHVNKPDKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             EEEETTSSCEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccccccccccccc--cccccccceEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            9999998875433  34566799999999999999999999999999754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.3e-33  Score=209.50  Aligned_cols=208  Identities=19%  Similarity=0.296  Sum_probs=169.5

Q ss_pred             eeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe-cccccEEEEEECCCCCEEEEecCCCcEEEE
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIW   96 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~   96 (231)
                      .+..++.||.+.|++++|+|++++|++|+.||.|++||+.+++....+. .|...|.+++|+|++++ ++++.|+.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~   81 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVV   81 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEe
Confidence            4567889999999999999999999999999999999999888777764 57788999999999874 566678999999


Q ss_pred             eCCCceee-------------e--ee------------------c-------CCCcceEEEEECCCCCEEEEeecCCcEE
Q psy4391          97 ELSSGKCL-------------K--TL------------------K-------GHSNYVFCCNFNPQSNLIVSGSFDESVR  136 (231)
Q Consensus        97 d~~~~~~~-------------~--~~------------------~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~  136 (231)
                      +.......             .  .+                  .       .....+.+++++|+++++++++.|+.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~  161 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVH  161 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred             ccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            86432100             0  00                  0       0122355678999999999999999999


Q ss_pred             EEECCCCceee-eccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeee--cCCCCCeEEEEECCCCCEEEE
Q psy4391         137 IWDVRTGKCLK-TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILA  213 (231)
Q Consensus       137 v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~  213 (231)
                      +||+++++... ....|...|.+++|+|+++++++++.|+.+++||+.++.......  ..+..+|.+++|+|+|++|++
T Consensus       162 ~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  241 (299)
T d1nr0a2         162 VYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT  241 (299)
T ss_dssp             EEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEE
Confidence            99998876543 344678899999999999999999999999999998776544332  234568999999999999999


Q ss_pred             EeCCCeEEEEeCC
Q psy4391         214 ATLDNTLKLWDSY  226 (231)
Q Consensus       214 ~s~d~~v~vwd~~  226 (231)
                      |+.||.|++||..
T Consensus       242 gs~dg~i~iwd~~  254 (299)
T d1nr0a2         242 GSLDNSVIVWNMN  254 (299)
T ss_dssp             EETTSCEEEEETT
T ss_pred             EcCCCEEEEEECC
Confidence            9999999999963

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.8e-33  Score=214.30  Aligned_cols=206  Identities=20%  Similarity=0.287  Sum_probs=172.4

Q ss_pred             eeEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEE--EecccccEEEEEECCCCCEEEEecCCCcEEE
Q psy4391          18 VLKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT--ISGHKLGISDVAWSSDSRLLVSGSDDKTLKI   95 (231)
Q Consensus        18 ~~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~   95 (231)
                      .....+.+|.+.|.+++|+|++++|++|+.|+.|++|+..++.....  +.++...+.+++|+|+++.+++++.++.+++
T Consensus        42 ~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i  121 (371)
T d1k8kc_          42 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI  121 (371)
T ss_dssp             EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred             EEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCccee
Confidence            34566789999999999999999999999999999999977654433  4567788999999999999999999999999


Q ss_pred             EeCCCcee----eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCc------------------eeeeccCCC
Q psy4391          96 WELSSGKC----LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGK------------------CLKTLPAHS  153 (231)
Q Consensus        96 ~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~------------------~~~~~~~~~  153 (231)
                      |+++....    ......+...+.+++|+|++++|++++.|+.+++||+....                  .+.....|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (371)
T d1k8kc_         122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  201 (371)
T ss_dssp             EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             eeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCcc
Confidence            98875432    23345677889999999999999999999999999986432                  334456778


Q ss_pred             CCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         154 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       154 ~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ..+.+++|+|+++++++++.|+.|++||+.+++.+..+.. +..+|.+++|+|+|++|++|. |+.+++|+.
T Consensus       202 ~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~  271 (371)
T d1k8kc_         202 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-ETLPLLAVTFITESSLVAAGH-DCFPVLFTY  271 (371)
T ss_dssp             SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-SSCCEEEEEEEETTEEEEEET-TSSCEEEEE
T ss_pred             CcEEEEEeecccccccccccCCcceEEeeecccceeeeec-ccccceeeeecCCCCEEEEEc-CCceEEEEe
Confidence            8899999999999999999999999999999888777654 456799999999998887665 777777653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-32  Score=210.36  Aligned_cols=200  Identities=33%  Similarity=0.637  Sum_probs=172.9

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe------------------cccccEEEEEECCCCCEEEE
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------------------GHKLGISDVAWSSDSRLLVS   86 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~~   86 (231)
                      +|++.|++++|+|+|++|++|+ |+.|++|+..+++....+.                  .+...|.+++|+|++++|++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            6999999999999999999986 8999999998887665543                  24456899999999999999


Q ss_pred             ecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCC
Q psy4391          87 GSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS  166 (231)
Q Consensus        87 ~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~  166 (231)
                      ++.||.|++||...++......+|...+.++.+++++..+++++.++.+++||.++.........+...+....+.+++.
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK  218 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999998887766665554444444445889


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeeeec------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         167 LIVSSSYDGLCRIWDTASGQCLKTLID------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       167 ~l~~~~~dg~i~v~d~~~~~~~~~~~~------~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +|++++.||.|++||..++.....+..      .+...|..++|+|++++|++++.||.|++||.
T Consensus       219 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~  283 (388)
T d1erja_         219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  283 (388)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             eEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEec
Confidence            999999999999999998877665432      24567899999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-31  Score=203.60  Aligned_cols=207  Identities=31%  Similarity=0.534  Sum_probs=171.5

Q ss_pred             eecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc
Q psy4391          22 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG  101 (231)
Q Consensus        22 ~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~  101 (231)
                      ....|...|.+++|+|++++|++|+.||.|++|+...++......+|...|..+.|++++..+++++.++.+++||..+.
T Consensus       116 ~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~  195 (388)
T d1erja_         116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  195 (388)
T ss_dssp             ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccc
Confidence            34467888999999999999999999999999999999988889999999999999999999999999999999999988


Q ss_pred             eeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec-------cCCCCCeEEEEEcCCCCeEEEEecC
Q psy4391         102 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL-------PAHSDPVSAVHFNRDGSLIVSSSYD  174 (231)
Q Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d  174 (231)
                      ........+...+....+.++++++++++.|+.|++||.+++.....+       ..|.++|.+++|+|++++|++++.|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  275 (388)
T d1erja_         196 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  275 (388)
T ss_dssp             EEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence            877766655554544445558899999999999999999988765544       3567899999999999999999999


Q ss_pred             CeEEEEeCCCCceeee-----------eecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q psy4391         175 GLCRIWDTASGQCLKT-----------LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~-----------~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~  228 (231)
                      |.+++||+.+++....           ....+...+..++|+|+|++|++|+.||.|++||....
T Consensus       276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            9999999986543221           12234567899999999999999999999999997543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-30  Score=195.19  Aligned_cols=205  Identities=25%  Similarity=0.377  Sum_probs=165.5

Q ss_pred             eecccc-cceEEEEECC--CCCEEEEEeCCCcEEEeecCCCcE--------EEEEecccccEEEEEECCCCCEEEEecC-
Q psy4391          22 TLAGHT-KAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKF--------EKTISGHKLGISDVAWSSDSRLLVSGSD-   89 (231)
Q Consensus        22 ~~~~h~-~~i~~~~~~~--~~~~l~~~~~dg~i~i~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-   89 (231)
                      .+.+|. ..|++++|+|  +|++|++|+.||.|++|+...+..        ...+..+..+|.+++|+++++++++++. 
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence            345664 6799999998  567999999999999999754321        2234456778999999999999887654 


Q ss_pred             -CCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCE-EEEeecCCcEEEEECCCCceeeec---cCCCCCeEEEEEcCC
Q psy4391          90 -DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVRTGKCLKTL---PAHSDPVSAVHFNRD  164 (231)
Q Consensus        90 -~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~  164 (231)
                       ++.+.+|+.++++.+..+.+|...+.+++|+|++.. +++++.|+.+++||++..+.....   ..|...|.+++|+|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd  216 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD  216 (325)
T ss_dssp             SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred             ccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccc
Confidence             678999999999999999999999999999999875 678899999999999877654443   456778999999996


Q ss_pred             -CCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEEC---CCCCEEEEEeCCCeEEEEeCCC
Q psy4391         165 -GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS---PNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       165 -~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s---~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                       +.++++++.|+.|++||+++++.+..+..+. .++..+.|+   |+|++|++++.|+.|+|||...
T Consensus       217 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~-~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         217 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ-EPVQGGIFALSWLDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             TCCEEEEEETTCCEEEEETTTCCEEEECCBTT-BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             cceeccccccccceeeeeeccccccccccccc-cccccceeeeeccCCCEEEEEeCCCeEEEEECCC
Confidence             6789999999999999999999887765433 333333333   6899999999999999999643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.7e-30  Score=194.25  Aligned_cols=204  Identities=29%  Similarity=0.568  Sum_probs=151.5

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCC------------------
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD------------------   80 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------   80 (231)
                      ....|+||++.|.+ +++++|++|++|+.||.|++||..+++....+.+|...|.+++|+|+                  
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~   86 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET   86 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceeccccccccccc
Confidence            34567899998865 36668999999999999999999988888777777777766666542                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy4391          81 --------------------------------------------------------------------------------   80 (231)
Q Consensus        81 --------------------------------------------------------------------------------   80 (231)
                                                                                                      
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~  166 (342)
T d2ovrb2          87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET  166 (342)
T ss_dssp             TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred             ccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccc
Confidence                                                                                            


Q ss_pred             --------------------CCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEEC
Q psy4391          81 --------------------SRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV  140 (231)
Q Consensus        81 --------------------~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  140 (231)
                                          +.++++++.||.|++||++.++.+..+..|...+.++.+  +++++++++.|+.|++||+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~s~d~~i~iwd~  244 (342)
T d2ovrb2         167 ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDI  244 (342)
T ss_dssp             TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred             ceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEec--CCCEEEEEcCCCEEEEEec
Confidence                                223344444444444554444444444455555555544  4568999999999999999


Q ss_pred             CCCceeeeccC---CCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeec----CCCCCeEEEEECCCCCEEEE
Q psy4391         141 RTGKCLKTLPA---HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID----DDNPPVSFVKFSPNGKYILA  213 (231)
Q Consensus       141 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----~~~~~i~~~~~s~~g~~l~~  213 (231)
                      ...+....+..   |...+.++.++  ++++++++.||.|++||+++++.++.+..    .+...|..++|+|++.+|++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~  322 (342)
T d2ovrb2         245 KTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV  322 (342)
T ss_dssp             TTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             ccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence            88876665543   44566666664  57999999999999999999998877653    34457999999999999999


Q ss_pred             EeCCC----eEEEEeCCC
Q psy4391         214 ATLDN----TLKLWDSYP  227 (231)
Q Consensus       214 ~s~d~----~v~vwd~~~  227 (231)
                      |+.||    +|++||...
T Consensus       323 g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         323 GSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ECSSSSSCCEEEEEECCC
T ss_pred             EeCCCCCeeEEEEEeCCC
Confidence            99888    499999754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.1e-30  Score=194.77  Aligned_cols=204  Identities=18%  Similarity=0.293  Sum_probs=166.6

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeC--CCcEEEeecCCCcEEEEEecccccEEEEEECCCCCE-EEEecCCCcEEEEe
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSA--DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRL-LVSGSDDKTLKIWE   97 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~g~i~~~d   97 (231)
                      .....|.+.|.+++|+++++++++++.  ++.+.+|+..+++....+.+|...+.+++|+|++.. +++++.|+.+++||
T Consensus       109 ~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d  188 (325)
T d1pgua1         109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ  188 (325)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEE
T ss_pred             cccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccc
Confidence            344568889999999999999877654  678999999999988999999999999999998875 67889999999999


Q ss_pred             CCCceeeeee---cCCCcceEEEEECCC-CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEc---CCCCeEEE
Q psy4391          98 LSSGKCLKTL---KGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN---RDGSLIVS  170 (231)
Q Consensus        98 ~~~~~~~~~~---~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~  170 (231)
                      ....+.....   ..+...+.+++|+|+ +.++++++.|+.|++||+++++.+..+..|..++..+.|+   |++++|++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s  268 (325)
T d1pgua1         189 GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFAT  268 (325)
T ss_dssp             TTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEE
T ss_pred             ccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEE
Confidence            9887655544   345677999999996 6889999999999999999999999988887766555554   68999999


Q ss_pred             EecCCeEEEEeCCCCceeeeeecCCC-CCeEEE--EECCCCCEEEEEeCCCeEEEEeC
Q psy4391         171 SSYDGLCRIWDTASGQCLKTLIDDDN-PPVSFV--KFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       171 ~~~dg~i~v~d~~~~~~~~~~~~~~~-~~i~~~--~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ++.|+.|++||+++++.+..+..+.. .....+  .+.++ .+|++++.||.|+|||.
T Consensus       269 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         269 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             EeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            99999999999999998877654332 222333  34443 47889999999999984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.4e-28  Score=183.68  Aligned_cols=204  Identities=27%  Similarity=0.582  Sum_probs=156.6

Q ss_pred             eEEeecccccce-EEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          19 LKFTLAGHTKAV-SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        19 ~~~~~~~h~~~i-~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      .+.+|+||...| +|+.|  ++++|++|+.||.|++||..+++....+.+|...|.+++|+|+ .+|++++.|+.|++|+
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            356788998875 55555  6889999999999999999999999999999999999999985 5799999999999999


Q ss_pred             CCCceeeeeecCCC--cceEEEEECCCCCEEEEeecCCcEEEEEC-----------------------------------
Q psy4391          98 LSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFDESVRIWDV-----------------------------------  140 (231)
Q Consensus        98 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~v~d~-----------------------------------  140 (231)
                      ....+.........  .......+.+++..+++++.|+.|++||+                                   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            98776544433221  22223344455555555555555555554                                   


Q ss_pred             ----------------------------CCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeee
Q psy4391         141 ----------------------------RTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI  192 (231)
Q Consensus       141 ----------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  192 (231)
                                                  ++++.+.....+...+.++.++|++.++++++.|+.|++||+.++..+..+.
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             cccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc
Confidence                                        4444444444556677888999999999999999999999999998777665


Q ss_pred             cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Q psy4391         193 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYPC  228 (231)
Q Consensus       193 ~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~~  228 (231)
                       .+...|.++++++  ++|++++.||.|++||....
T Consensus       241 -~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         241 -GHTALVGLLRLSD--KFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             -CCSSCCCEEEECS--SEEEEECTTSEEEEEETTTC
T ss_pred             -ccccccccccccc--ceeeeeeccccccccccccc
Confidence             4456788888864  79999999999999997543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=3.5e-28  Score=181.87  Aligned_cols=200  Identities=20%  Similarity=0.290  Sum_probs=155.5

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcE-------------EEE--E------------------e----
Q psy4391          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-------------EKT--I------------------S----   66 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-------------~~~--~------------------~----   66 (231)
                      .+|...|++++|+|+++++ +++.|+.+++|+......             ...  +                  .    
T Consensus        52 ~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~  130 (299)
T d1nr0a2          52 DVHATMITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL  130 (299)
T ss_dssp             CSCSSCEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred             CCCCCcEEEEEeeccceee-cccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4688999999999999865 456799999998532100             000  0                  0    


Q ss_pred             ---cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee-eecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCC
Q psy4391          67 ---GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK-TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRT  142 (231)
Q Consensus        67 ---~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~  142 (231)
                         .....+..++|+|+++++++++.++.+++||+++++... ....|...+.+++|+|+++++++++.++.|++||+.+
T Consensus       131 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               012245678999999999999999999999998766433 2345778899999999999999999999999999987


Q ss_pred             Cceee---eccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeee--cCCCCCeEEEEECCCCCEEEEEeCC
Q psy4391         143 GKCLK---TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLD  217 (231)
Q Consensus       143 ~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~s~d  217 (231)
                      +....   .+..|..+|.+++|+|++++|++|+.||.|++||+.+++......  .+....+..+.+ +++++|++++.|
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D  289 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQD  289 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETT
T ss_pred             cccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCC
Confidence            76543   445678899999999999999999999999999998876443332  233445666654 567899999999


Q ss_pred             CeEEEEeC
Q psy4391         218 NTLKLWDS  225 (231)
Q Consensus       218 ~~v~vwd~  225 (231)
                      +.|++||.
T Consensus       290 ~~i~iWdl  297 (299)
T d1nr0a2         290 SNIKFWNV  297 (299)
T ss_dssp             SCEEEEEC
T ss_pred             CEEEEEec
Confidence            99999994

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.9e-28  Score=186.72  Aligned_cols=202  Identities=20%  Similarity=0.312  Sum_probs=150.4

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCc-------EEE-------------------------EE-e-c-
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------FEK-------------------------TI-S-G-   67 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~-------~~~-------------------------~~-~-~-   67 (231)
                      .++|...|.++++++  +++++++.|+.|++|+.....       ...                         .+ . + 
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            468999999999864  689999999999999853221       000                         00 0 0 


Q ss_pred             ------------------------------ccccEEEEEECCC-----CCEEEEecCCCcEEEEeCCCce----------
Q psy4391          68 ------------------------------HKLGISDVAWSSD-----SRLLVSGSDDKTLKIWELSSGK----------  102 (231)
Q Consensus        68 ------------------------------~~~~v~~~~~~~~-----~~~l~~~~~~g~i~~~d~~~~~----------  102 (231)
                                                    +...+..++|.++     +.++++++.||.+++|++....          
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence                                          0111334445443     3567888888999999864211          


Q ss_pred             --------eeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeec------cCCCCCeEEEEEcCCCCeE
Q psy4391         103 --------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTL------PAHSDPVSAVHFNRDGSLI  168 (231)
Q Consensus       103 --------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l  168 (231)
                              .......+...+.+++|+|++ ++++|+.|+.|++||+++++.+..+      ..|..+|.+++|+|++++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  246 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL  246 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred             ccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccccee
Confidence                    001112234557789999987 8899999999999999998876543      4678899999999999999


Q ss_pred             EEEecCC---eEEEEeCCCCceeeeee------------cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         169 VSSSYDG---LCRIWDTASGQCLKTLI------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       169 ~~~~~dg---~i~v~d~~~~~~~~~~~------------~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ++|+.|+   .|++||+.+++.+..+.            ..|...|.+++|+|+|++|++++.|+.|+|||..+
T Consensus       247 ~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             eeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            9999886   58999999988776653            23566799999999999999999999999999754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-28  Score=181.40  Aligned_cols=148  Identities=14%  Similarity=0.241  Sum_probs=114.8

Q ss_pred             ECCCCCEEEEecCCC-cEEEEeCCCceeeeeec-CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceee-eccCCC
Q psy4391          77 WSSDSRLLVSGSDDK-TLKIWELSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK-TLPAHS  153 (231)
Q Consensus        77 ~~~~~~~l~~~~~~g-~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~  153 (231)
                      ++++++.+++++.++ .+++|++...+....+. .+...+.+++|+|++.+|++++.||.|++||+.+++... .+..|.
T Consensus       126 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~  205 (287)
T d1pgua2         126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT  205 (287)
T ss_dssp             EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCS
T ss_pred             eeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccc
Confidence            344555555555543 57777776544433333 345678999999999999999999999999999887654 467888


Q ss_pred             CCeEEEEEcCC----------CCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         154 DPVSAVHFNRD----------GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       154 ~~v~~~~~~~~----------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      .+|.+++|+|.          +.++++|+.|+.|++||+.+..........+...|..++|+|++ .|++++.|+.|++|
T Consensus       206 ~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW  284 (287)
T d1pgua2         206 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRW  284 (287)
T ss_dssp             SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEE
T ss_pred             cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEE
Confidence            99999999874          46899999999999999987554444555677789999999987 57888899999999


Q ss_pred             eC
Q psy4391         224 DS  225 (231)
Q Consensus       224 d~  225 (231)
                      |.
T Consensus       285 ~i  286 (287)
T d1pgua2         285 NV  286 (287)
T ss_dssp             EE
T ss_pred             EE
Confidence            84

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.4e-28  Score=184.41  Aligned_cols=205  Identities=14%  Similarity=0.143  Sum_probs=151.6

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEE---EEEecccccEEEEEECCCC-CEEEEecCCCcEEEE
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE---KTISGHKLGISDVAWSSDS-RLLVSGSDDKTLKIW   96 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~   96 (231)
                      ..+++|.+.|++++|+|++++|++|+.||+|++||+......   ....+|..+|.+++|+|++ .+|++|+.|+.|++|
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            345789999999999999999999999999999998655432   2233688899999999864 578999999999999


Q ss_pred             eCCCceeeeeecCCC-------------------------------------------------cceEEEEECCCCCEEE
Q psy4391          97 ELSSGKCLKTLKGHS-------------------------------------------------NYVFCCNFNPQSNLIV  127 (231)
Q Consensus        97 d~~~~~~~~~~~~~~-------------------------------------------------~~v~~~~~~~~~~~l~  127 (231)
                      +............+.                                                 .......+.+.+..++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI  164 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred             ecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence            987543222111000                                                 0011223445667788


Q ss_pred             EeecCCcEEEEECCCCceee------------------------------------------------------------
Q psy4391         128 SGSFDESVRIWDVRTGKCLK------------------------------------------------------------  147 (231)
Q Consensus       128 ~~~~d~~i~v~d~~~~~~~~------------------------------------------------------------  147 (231)
                      +++.|+.+++||++......                                                            
T Consensus       165 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T d1yfqa_         165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN  244 (342)
T ss_dssp             EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred             eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence            88888888888876432100                                                            


Q ss_pred             -eccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         148 -TLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       148 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                       ....|...+.+++|+|++++|++|+.||.|++||+.+++.+..+...+  ....++|+|+|++|++++.|+.+++|...
T Consensus       245 ~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~--~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN--EDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS--SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             cCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC--CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence             001233467899999999999999999999999999998887765443  34567889999999999999988888754


Q ss_pred             C
Q psy4391         227 P  227 (231)
Q Consensus       227 ~  227 (231)
                      +
T Consensus       323 ~  323 (342)
T d1yfqa_         323 D  323 (342)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.4e-27  Score=177.23  Aligned_cols=162  Identities=32%  Similarity=0.659  Sum_probs=150.6

Q ss_pred             EEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCC------------------
Q psy4391          20 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS------------------   81 (231)
Q Consensus        20 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------   81 (231)
                      ...+.+|...+.+++|++++++|++++.|+.+++|+..++.....+..+...+..+.|+|++                  
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (317)
T d1vyhc1         136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK  215 (317)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC------
T ss_pred             eeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeecc
Confidence            34566889999999999999999999999999999999998888888888889988887754                  


Q ss_pred             --CEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEE
Q psy4391          82 --RLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAV  159 (231)
Q Consensus        82 --~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~  159 (231)
                        ..+++++.|+.|++||+.+++.+..+.+|...+.+++++|++++|++++.||.|++||+++++.+..+..|.++|+++
T Consensus       216 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~  295 (317)
T d1vyhc1         216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL  295 (317)
T ss_dssp             -CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred             CCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence              368899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCeEEEEecCCeEEEEe
Q psy4391         160 HFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       160 ~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      +|+|++++|++|+.||.|++||
T Consensus       296 ~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         296 DFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EECSSSSCEEEEETTSEEEEEC
T ss_pred             EEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=6.4e-27  Score=177.09  Aligned_cols=158  Identities=25%  Similarity=0.497  Sum_probs=146.2

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      ..+...+....+.+.+.+++++..|+.+++||..+++....+.+|...|.+++|+|++++|++++.|+.|++|++.....
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~  260 (340)
T d1tbga_         181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             cccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc
Confidence            35667789999999999999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             eeeec--CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         104 LKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       104 ~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      ...+.  .+...+.++.|+|++++|++|+.||.|++||+.+++.+..+.+|.++|.+++|+|++++|++|+.||.|++||
T Consensus       261 ~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            65553  4456789999999999999999999999999999999999999999999999999999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.4e-26  Score=179.91  Aligned_cols=198  Identities=24%  Similarity=0.356  Sum_probs=152.3

Q ss_pred             cccceEEEEECCC-----CCEEEEEeCCCcEEEeecCCCc------------E---EEEE---ecccccEEEEEECCCCC
Q psy4391          26 HTKAVSSVKFSPN-----GEWLASSSADKLIKIWGAYDGK------------F---EKTI---SGHKLGISDVAWSSDSR   82 (231)
Q Consensus        26 h~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~~~~~~~------------~---~~~~---~~~~~~v~~~~~~~~~~   82 (231)
                      +...+..++|.++     +.++++++.||.+++|++....            .   ....   ..+...+.+++|+|++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence            4456777888765     3578889999999999863210            0   1111   1223347789999987 


Q ss_pred             EEEEecCCCcEEEEeCCCceeeeee------cCCCcceEEEEECCCCCEEEEeecCCc---EEEEECCCCceeeec----
Q psy4391          83 LLVSGSDDKTLKIWELSSGKCLKTL------KGHSNYVFCCNFNPQSNLIVSGSFDES---VRIWDVRTGKCLKTL----  149 (231)
Q Consensus        83 ~l~~~~~~g~i~~~d~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~---i~v~d~~~~~~~~~~----  149 (231)
                      ++++|+.|+.|++||+.+++.+..+      .+|...|.+++|+|++++|++|+.|+.   |++||+++++.+..+    
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~  276 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  276 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccc
Confidence            7899999999999999988766543      457889999999999999999999874   899999998876655    


Q ss_pred             ---------cCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCC--------------------CCeE
Q psy4391         150 ---------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDN--------------------PPVS  200 (231)
Q Consensus       150 ---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--------------------~~i~  200 (231)
                               .+|.+.|++++|+|++++|++++.|+.|++||+.+++++.++..+..                    ..+.
T Consensus       277 ~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~  356 (393)
T d1sq9a_         277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF  356 (393)
T ss_dssp             -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEE
T ss_pred             ccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccc
Confidence                     36889999999999999999999999999999999998877653311                    1244


Q ss_pred             EEEECCCC----------CEEEEEeCCCeEEEEe
Q psy4391         201 FVKFSPNG----------KYILAATLDNTLKLWD  224 (231)
Q Consensus       201 ~~~~s~~g----------~~l~~~s~d~~v~vwd  224 (231)
                      .+.|.+++          +.+++++.|+.|++|.
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         357 DVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             EEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             eEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            45554432          4578888889998885

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.7e-25  Score=164.34  Aligned_cols=192  Identities=28%  Similarity=0.582  Sum_probs=153.2

Q ss_pred             ecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce
Q psy4391          23 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (231)
Q Consensus        23 ~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~  102 (231)
                      ..+|...|+|+.|  +|++|++|+.||.|++||..+++....+.+|...|.+++|  ++++|++++.|+.+++|++..+.
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence            3468889998765  7999999999999999999999999999999999998887  56899999999999999987654


Q ss_pred             eeeeec-------------------------------------------CCCcceEEEEECCCCCEEEEeecCCcEEEEE
Q psy4391         103 CLKTLK-------------------------------------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWD  139 (231)
Q Consensus       103 ~~~~~~-------------------------------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d  139 (231)
                      ......                                           .+...+....+  ....+++++.|+.+++||
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d  164 (293)
T d1p22a2          87 MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN  164 (293)
T ss_dssp             EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred             ccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccccee--cccccccccCCCceeeec
Confidence            322211                                           11222222222  345678889999999999


Q ss_pred             CCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCe
Q psy4391         140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT  219 (231)
Q Consensus       140 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~  219 (231)
                      +++++.+..+..+...+..+.++  +.++++++.||.|++||+++.+.+..... ....+.  .+++++.+|++++.||.
T Consensus       165 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~--~~~~~~~~l~sg~~dg~  239 (293)
T d1p22a2         165 TSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG-HEELVR--CIRFDNKRIVSGAYDGK  239 (293)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEE--EEECCSSEEEEEETTSC
T ss_pred             CCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecc-cceeee--eccccceEEEEEcCCCE
Confidence            99999888888888888777765  57899999999999999999887766543 333444  46778899999999999


Q ss_pred             EEEEeC
Q psy4391         220 LKLWDS  225 (231)
Q Consensus       220 v~vwd~  225 (231)
                      |++||.
T Consensus       240 i~iwd~  245 (293)
T d1p22a2         240 IKVWDL  245 (293)
T ss_dssp             EEEEEH
T ss_pred             EEEEEC
Confidence            999994

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=4e-26  Score=174.21  Aligned_cols=188  Identities=15%  Similarity=0.161  Sum_probs=158.0

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCC--cEEEEeCCCceeeeeec
Q psy4391          32 SVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK--TLKIWELSSGKCLKTLK  108 (231)
Q Consensus        32 ~~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g--~i~~~d~~~~~~~~~~~  108 (231)
                      .-.||| ||+++|+++ +|.|++|+..++...+ + .|...+.+++|+|||+.|++++.+.  .|++||.++++.. .+.
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~   82 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE   82 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence            457999 999999876 5899999998776554 3 5788899999999999998766543  7999999987754 456


Q ss_pred             CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe----------cCCeEE
Q psy4391         109 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS----------YDGLCR  178 (231)
Q Consensus       109 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~  178 (231)
                      .+...+.+++|+|+++++++++.++.+++|++.+++....+..+...+.+++|+|+|++|+.+.          .++.++
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence            6888899999999999999999999999999999998888888888899999999999998654          345689


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +||+.+++.....  .....+..++|+|+|++|++++.++.+++||.
T Consensus       163 v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         163 VYDMEGRKIFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             EEETTTTEEEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             eeccccCceeeec--ccccccccccccCCCCEEEEEeCCCceEcccc
Confidence            9999987654432  33456778899999999999999999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.4e-25  Score=170.17  Aligned_cols=192  Identities=26%  Similarity=0.384  Sum_probs=157.8

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee
Q psy4391          24 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC  103 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  103 (231)
                      ..|...+..  +.++++.++.+..|+.+++|+..+++......++...+..+.|+|+++.+++++.|+.|++||.+++..
T Consensus       158 ~~~~~~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  235 (355)
T d1nexb2         158 RGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL  235 (355)
T ss_dssp             ECCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE
T ss_pred             eeccccccc--cccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccc
Confidence            345555544  455788999999999999999999988888888888899999999999999999999999999999999


Q ss_pred             eeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEE-EEcCCCCeEEEEecCCeEEEEeC
Q psy4391         104 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAV-HFNRDGSLIVSSSYDGLCRIWDT  182 (231)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~v~d~  182 (231)
                      +..+.+|...+.++.+++  +++++++.||.|++||++++....  ..|...+.++ .+++++.++++| .||.|++||+
T Consensus       236 ~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~  310 (355)
T d1nexb2         236 MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSG-SENQFNIYNL  310 (355)
T ss_dssp             EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSEEEEE-ETTEEEEEET
T ss_pred             cccccccccccccccccc--ceeeeeecccccccccccccceec--ccccCCceEEEEEcCCCCEEEEE-eCCEEEEEEC
Confidence            999999999999988864  699999999999999998776433  3344444444 456777766655 5999999999


Q ss_pred             CCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       183 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                      ++++.+......+..+|.+++|+|+ .++++++.||++.||
T Consensus       311 ~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         311 RSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             TTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred             CCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence            9999877666667778999999987 578888999986554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=2.4e-25  Score=169.80  Aligned_cols=156  Identities=13%  Similarity=0.148  Sum_probs=131.7

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCC--cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCce
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSSADK--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGK  102 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~  102 (231)
                      +|...|.+++|+|||++|++++.+.  .+++|+..++.. ..+..+...+..++|+|++++|++++.++.+++|+..+++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            6889999999999999988765443  789999977654 4566788889999999999999999999999999999998


Q ss_pred             eeeeecCCCcceEEEEECCCCCEEEEee----------cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEe
Q psy4391         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGS----------FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      ....+..+...+.+++|+|+|++|+.+.          .++.+++||+.+++... +..+...+..++|+|+|++|++++
T Consensus       119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEe
Confidence            8888888888888899999999998654          34458999999876544 345567788899999999999999


Q ss_pred             cCCeEEEEeC
Q psy4391         173 YDGLCRIWDT  182 (231)
Q Consensus       173 ~dg~i~v~d~  182 (231)
                      .++.+.+||.
T Consensus       198 ~~~~~~~~d~  207 (360)
T d1k32a3         198 YRSLDPSPDR  207 (360)
T ss_dssp             SCCCCCEECS
T ss_pred             CCCceEcccc
Confidence            9988888874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.6e-24  Score=156.72  Aligned_cols=195  Identities=32%  Similarity=0.682  Sum_probs=150.5

Q ss_pred             eEEeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe--------------------------------
Q psy4391          19 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--------------------------------   66 (231)
Q Consensus        19 ~~~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--------------------------------   66 (231)
                      ...++.+|...|.+++|  ++++|++|+.||.+++|+...+.......                                
T Consensus        47 ~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (293)
T d1p22a2          47 CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS  124 (293)
T ss_dssp             EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSS
T ss_pred             EEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccc
Confidence            45677899999999887  57899999999999999986654322211                                


Q ss_pred             -----------cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcE
Q psy4391          67 -----------GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV  135 (231)
Q Consensus        67 -----------~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i  135 (231)
                                 .+...+....+  ....+++++.|+.+++||..+++.+..+.++...+..+.++  +..+++++.|+.|
T Consensus       125 ~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i  200 (293)
T d1p22a2         125 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI  200 (293)
T ss_dssp             SSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCE
T ss_pred             ccccccccccccccccccccee--cccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEE
Confidence                       11122222332  33467788899999999999999888888887777776664  5689999999999


Q ss_pred             EEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCC---------ceeeeeecCCCCCeEEEEECC
Q psy4391         136 RIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLKTLIDDDNPPVSFVKFSP  206 (231)
Q Consensus       136 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---------~~~~~~~~~~~~~i~~~~~s~  206 (231)
                      ++||+++...+.....+...+..  +++++.+|++++.||.|++||+...         ..+..+ ..+...|.+++|+ 
T Consensus       201 ~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~H~~~V~~v~~d-  276 (293)
T d1p22a2         201 RLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQFD-  276 (293)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEEC-
T ss_pred             EEEecccceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEe-cCCCCCEEEEEEc-
Confidence            99999999998888888877765  5667889999999999999996432         223333 3455678888884 


Q ss_pred             CCCEEEEEeCCCeEEEEe
Q psy4391         207 NGKYILAATLDNTLKLWD  224 (231)
Q Consensus       207 ~g~~l~~~s~d~~v~vwd  224 (231)
                       +++|++++.||.|+|||
T Consensus       277 -~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         277 -EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             -SSCEEECCSSSEEEEEC
T ss_pred             -CCEEEEEecCCEEEEeC
Confidence             57899999999999998

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.4e-23  Score=156.11  Aligned_cols=169  Identities=36%  Similarity=0.680  Sum_probs=125.4

Q ss_pred             eecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECC------------
Q psy4391          54 WGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP------------  121 (231)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~------------  121 (231)
                      |+..+.+....+.+|...|.. +++++|++|++|+.||.|++||+.++++++.+.+|...|.+++++|            
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~   79 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTL   79 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceecccc
Confidence            454555667788999988865 4677899999999999999999999888777776666555554433            


Q ss_pred             --------------------------------------------------------------------------------
Q psy4391         122 --------------------------------------------------------------------------------  121 (231)
Q Consensus       122 --------------------------------------------------------------------------------  121 (231)
                                                                                                      
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence                                                                                            


Q ss_pred             --------------------------CCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC
Q psy4391         122 --------------------------QSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG  175 (231)
Q Consensus       122 --------------------------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  175 (231)
                                                ++..+++++.|+.|++||++.++.+..+..|...+.+++++  ++++++++.||
T Consensus       160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~  237 (342)
T d2ovrb2         160 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADS  237 (342)
T ss_dssp             EEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTS
T ss_pred             EEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCC
Confidence                                      23445666666666667766666666666777777776665  56999999999


Q ss_pred             eEEEEeCCCCceeeeeecCC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         176 LCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       176 ~i~v~d~~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      .|++||+...+....+....  ...+..+.  ++++++++++.||.|++||...
T Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ--FNKNFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             CEEEEETTTCCEEEEECSTTSCSSCEEEEE--ECSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEEecccccccccccccceeeeceeecc--cCCCeeEEEcCCCEEEEEECCC
Confidence            99999999888766665433  33444444  4567999999999999999743

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.8e-22  Score=158.23  Aligned_cols=206  Identities=11%  Similarity=0.111  Sum_probs=144.2

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEE--EEe---cccccEEEEEECCCCCEEEEe-cCCCcEE
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TIS---GHKLGISDVAWSSDSRLLVSG-SDDKTLK   94 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~--~~~---~~~~~v~~~~~~~~~~~l~~~-~~~g~i~   94 (231)
                      .++..| ..+..++|+|||+++++++.||.+++||+.+++...  .+.   ++...+.+++|+|||++++++ ..++.++
T Consensus        56 ~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~  134 (426)
T d1hzua2          56 KVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFA  134 (426)
T ss_dssp             EEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred             EEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEE
Confidence            344444 468999999999999999999999999998876443  222   344445667888999987554 5788999


Q ss_pred             EEeCCCceeeeeecC-------------------------------------------------------CCcceEEEEE
Q psy4391          95 IWELSSGKCLKTLKG-------------------------------------------------------HSNYVFCCNF  119 (231)
Q Consensus        95 ~~d~~~~~~~~~~~~-------------------------------------------------------~~~~v~~~~~  119 (231)
                      +||..+++....+..                                                       +...+..+.+
T Consensus       135 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (426)
T d1hzua2         135 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGW  214 (426)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEE
T ss_pred             EEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeE
Confidence            999876543322110                                                       1122345778


Q ss_pred             CCCCCEEEEeec-CCcEEEEECCCCce-----------------------------------------------------
Q psy4391         120 NPQSNLIVSGSF-DESVRIWDVRTGKC-----------------------------------------------------  145 (231)
Q Consensus       120 ~~~~~~l~~~~~-d~~i~v~d~~~~~~-----------------------------------------------------  145 (231)
                      +|++++++++.. +..+.+++..+++.                                                     
T Consensus       215 ~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~  294 (426)
T d1hzua2         215 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK  294 (426)
T ss_dssp             CTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTS
T ss_pred             CCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccce
Confidence            888887777654 34466666654332                                                     


Q ss_pred             -eeeccCCCCCeEEEEEcCCCCeEEE-------EecCCeEEEEeCCCCceeeeee--------cCCCCCeEEEEECCCCC
Q psy4391         146 -LKTLPAHSDPVSAVHFNRDGSLIVS-------SSYDGLCRIWDTASGQCLKTLI--------DDDNPPVSFVKFSPNGK  209 (231)
Q Consensus       146 -~~~~~~~~~~v~~~~~~~~~~~l~~-------~~~dg~i~v~d~~~~~~~~~~~--------~~~~~~i~~~~~s~~g~  209 (231)
                       ...+..|...+..++|+|+++++++       +..+++|++||+.+++...++.        ......+..++|||||+
T Consensus       295 ~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk  374 (426)
T d1hzua2         295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD  374 (426)
T ss_dssp             EEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS
T ss_pred             EeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCC
Confidence             1223445566788999999999995       4457899999999987665542        12344578899999999


Q ss_pred             EEEEE-----eCCCeEEEEeCCC
Q psy4391         210 YILAA-----TLDNTLKLWDSYP  227 (231)
Q Consensus       210 ~l~~~-----s~d~~v~vwd~~~  227 (231)
                      +++++     +.+|.|+|||...
T Consensus       375 ~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         375 EVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             EEEEEECCCTTSCCEEEEEETTT
T ss_pred             EEEEEEecCCCCCCeEEEEECCC
Confidence            77553     3578999999754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.6e-22  Score=147.00  Aligned_cols=150  Identities=19%  Similarity=0.304  Sum_probs=123.8

Q ss_pred             EEEECCCCCEEEEEeCCC-cEEEeecCCCcEEEEEe-cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee-eec
Q psy4391          32 SVKFSPNGEWLASSSADK-LIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK-TLK  108 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg-~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~-~~~  108 (231)
                      ..+++++++.+++++.++ .+++|+.........+. .+...+.+++|+|++.+|++++.+|.|++||+.+++... .+.
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  202 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA  202 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccc
Confidence            345667788888777765 79999986655444443 356779999999999999999999999999999887654 356


Q ss_pred             CCCcceEEEEECCC----------CCEEEEeecCCcEEEEECCC-CceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeE
Q psy4391         109 GHSNYVFCCNFNPQ----------SNLIVSGSFDESVRIWDVRT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC  177 (231)
Q Consensus       109 ~~~~~v~~~~~~~~----------~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  177 (231)
                      .|...+.+++|+|.          +.++++|+.|+.|++||+++ ++.+..+.+|...|.+++|+|++ .+++++.|+.|
T Consensus       203 ~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v  281 (287)
T d1pgua2         203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACI  281 (287)
T ss_dssp             CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCE
T ss_pred             ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeE
Confidence            78888999999874          46899999999999999977 45667778899999999999986 58899999999


Q ss_pred             EEEeC
Q psy4391         178 RIWDT  182 (231)
Q Consensus       178 ~v~d~  182 (231)
                      ++|++
T Consensus       282 ~iW~i  286 (287)
T d1pgua2         282 KRWNV  286 (287)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=8.6e-22  Score=148.01  Aligned_cols=167  Identities=17%  Similarity=0.211  Sum_probs=119.4

Q ss_pred             EEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee---eeeecCCCcceEEEEECCC-CCEEEEeecCCcEE
Q psy4391          61 FEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC---LKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR  136 (231)
Q Consensus        61 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~  136 (231)
                      .++...+|...|++++|+|++++|++++.||+|++||+.++..   ......|...|.+++|+|+ +.++++|+.|+.++
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            3445567888999999999999999999999999999875432   2222358889999999986 46899999999999


Q ss_pred             EEECCCCceeeeccCC-------------------------------------------------CCCeEEEEEcCCCCe
Q psy4391         137 IWDVRTGKCLKTLPAH-------------------------------------------------SDPVSAVHFNRDGSL  167 (231)
Q Consensus       137 v~d~~~~~~~~~~~~~-------------------------------------------------~~~v~~~~~~~~~~~  167 (231)
                      +|++..+........+                                                 ........+.+++..
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            9998765432221111                                                 001122344556677


Q ss_pred             EEEEecCCeEEEEeCCCCceeee-----------------------------------e---------------------
Q psy4391         168 IVSSSYDGLCRIWDTASGQCLKT-----------------------------------L---------------------  191 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~~~~~~~-----------------------------------~---------------------  191 (231)
                      +++++.|+.+++||+...+....                                   .                     
T Consensus       163 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeee
Confidence            88888888888888754321100                                   0                     


Q ss_pred             ----ecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         192 ----IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       192 ----~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                          ...+...+.+++|+|++++|++|+.||.|++||...
T Consensus       243 ~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             eccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC
Confidence                001122467899999999999999999999999743

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=6.9e-21  Score=149.37  Aligned_cols=185  Identities=12%  Similarity=0.034  Sum_probs=143.6

Q ss_pred             EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCcee--eeeec---CCCcceE
Q psy4391          41 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKC--LKTLK---GHSNYVF  115 (231)
Q Consensus        41 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~--~~~~~---~~~~~v~  115 (231)
                      ++++.+.+|.|.+||..+++....+..+. .+..++|+|||+++++++.|+.+++||+.+++.  ...++   .+...+.
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~  112 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  112 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence            35778889999999999999999998664 689999999999999999999999999987653  33333   2334455


Q ss_pred             EEEECCCCCEE-EEeecCCcEEEEECCCCceeeeccCC-----------CCCeEEEEEcCCCCeEE-EEecCCeEEEEeC
Q psy4391         116 CCNFNPQSNLI-VSGSFDESVRIWDVRTGKCLKTLPAH-----------SDPVSAVHFNRDGSLIV-SSSYDGLCRIWDT  182 (231)
Q Consensus       116 ~~~~~~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~-~~~~dg~i~v~d~  182 (231)
                      +..|+|||+++ +++..++.+++||..+++.+..+..+           ......+.++|++..++ +...++.+.+||.
T Consensus       113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~  192 (432)
T d1qksa2         113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY  192 (432)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred             ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence            56678899976 67788999999999999877655432           33456788999998765 5566799999999


Q ss_pred             CCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCC
Q psy4391         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSY  226 (231)
Q Consensus       183 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~~  226 (231)
                      .+.+...............++|+|+|+++++++. ++.+.++|..
T Consensus       193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~  237 (432)
T d1qksa2         193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK  237 (432)
T ss_dssp             TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             cCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc
Confidence            8877555443344455678999999998887775 5588888863

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=2.4e-19  Score=133.06  Aligned_cols=196  Identities=16%  Similarity=0.209  Sum_probs=148.2

Q ss_pred             cceEEEEECCCCCEEE-EEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEeCCCceeee
Q psy4391          28 KAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~~~~~~~  105 (231)
                      .....++|+|||++|+ ++..++.|++||..+++....+..+. .+..+.|++++..++ ++..++.+.+|+..+++...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeee
Confidence            4578999999999875 56678999999999998888877654 568899999998665 55667789999999988887


Q ss_pred             eecCCCcceEEEEECCCCCEEEEe-ecCCcEEEEECCCCceeeeccC---------------------------------
Q psy4391         106 TLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKTLPA---------------------------------  151 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~---------------------------------  151 (231)
                      .+..+ .....+.++|++..++.. ..++.+.+|+..++.....+..                                 
T Consensus       111 ~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (301)
T d1l0qa2         111 TVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT  189 (301)
T ss_dssp             EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccc
Confidence            77654 446778899999877654 4577788998876654322211                                 


Q ss_pred             --------CCCCeEEEEEcCCCCeEEEEec---CCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEE-EEEeCCCe
Q psy4391         152 --------HSDPVSAVHFNRDGSLIVSSSY---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYI-LAATLDNT  219 (231)
Q Consensus       152 --------~~~~v~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~s~d~~  219 (231)
                              ....+..+++++++..++++..   ++.|.+||+.+++.+..+...  ..+..++|+|||++| ++++.|+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~--~~~~~va~spdg~~l~va~~~~~~  267 (301)
T d1l0qa2         190 NSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFCNT  267 (301)
T ss_dssp             TEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTE
T ss_pred             eeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC--CCEEEEEEeCCCCEEEEEECCCCe
Confidence                    1122456788899988776543   468999999999887766432  346889999999987 46667899


Q ss_pred             EEEEeCCC
Q psy4391         220 LKLWDSYP  227 (231)
Q Consensus       220 v~vwd~~~  227 (231)
                      |++||...
T Consensus       268 i~v~D~~t  275 (301)
T d1l0qa2         268 VSVIDTAT  275 (301)
T ss_dssp             EEEEETTT
T ss_pred             EEEEECCC
Confidence            99999743

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.1e-19  Score=136.75  Aligned_cols=197  Identities=11%  Similarity=0.080  Sum_probs=148.3

Q ss_pred             cccccceEEEEECCCCCEEE-EEeCCCcEEEeecCCCcEEEEEecccc-----cEEEEEECCCCCEEEEec---------
Q psy4391          24 AGHTKAVSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKL-----GISDVAWSSDSRLLVSGS---------   88 (231)
Q Consensus        24 ~~h~~~i~~~~~~~~~~~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~---------   88 (231)
                      ..+...+..++|+|||++++ +++.++.|.+||..+++....+..+..     .+..++|+|+++.++++.         
T Consensus        30 ~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~  109 (337)
T d1pbyb_          30 ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTH  109 (337)
T ss_dssp             TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSC
T ss_pred             CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeee
Confidence            34556688999999999874 567889999999999988877754332     234689999999988765         


Q ss_pred             ---CCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc---------------
Q psy4391          89 ---DDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP---------------  150 (231)
Q Consensus        89 ---~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------------  150 (231)
                         .+..+.+||..+++....+... ..+..+.++|+|+++++++.+  +.+||..+++....+.               
T Consensus       110 ~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (337)
T d1pbyb_         110 FEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVL  186 (337)
T ss_dssp             EEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCC
T ss_pred             ccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcc
Confidence               3567889999998888777644 446678999999999988654  6778876654322210               


Q ss_pred             ---------------------------------------------------CCCCCeEEEEEcCCCCeEEEEecCCeEEE
Q psy4391         151 ---------------------------------------------------AHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (231)
Q Consensus       151 ---------------------------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  179 (231)
                                                                         .+...+..+.++|++.+++.+  ++.+++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v  264 (337)
T d1pbyb_         187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLES  264 (337)
T ss_dssp             CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEE
T ss_pred             eeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEE
Confidence                                                               111233445667777776654  588999


Q ss_pred             EeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         180 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       180 ~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                      ||+.+++.+..+...  ..+.+++|+|||++|++++.|+.|+|||...
T Consensus       265 ~d~~~~~~~~~~~~~--~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         265 FDLEKNASIKRVPLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             EETTTTEEEEEEECS--SCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             EECCCCcEEEEEcCC--CCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            999999988876543  3457899999999999999999999999743

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=4.4e-20  Score=139.49  Aligned_cols=192  Identities=12%  Similarity=0.102  Sum_probs=135.8

Q ss_pred             EEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe-cccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCceeeeeecCC
Q psy4391          33 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKTLKGH  110 (231)
Q Consensus        33 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~~~~~~~~~  110 (231)
                      ++|+++++++++++.++.|.+||..+++....+. .+...+.+++|+|||+++ +++..++.|.+||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            5789999999999999999999999998888776 345567899999999987 45567899999999998877655422


Q ss_pred             C------cceEEEEECCCCCEEEEeec------------CCcEEEEECCC------------------------------
Q psy4391         111 S------NYVFCCNFNPQSNLIVSGSF------------DESVRIWDVRT------------------------------  142 (231)
Q Consensus       111 ~------~~v~~~~~~~~~~~l~~~~~------------d~~i~v~d~~~------------------------------  142 (231)
                      .      ..+..+.++|+|+.+++++.            +..+.+||..+                              
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            1      12335677787777665432            33444444332                              


Q ss_pred             -----------Cceeeecc-------------------------------------------------------------
Q psy4391         143 -----------GKCLKTLP-------------------------------------------------------------  150 (231)
Q Consensus       143 -----------~~~~~~~~-------------------------------------------------------------  150 (231)
                                 ++.+..+.                                                             
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (346)
T d1jmxb_         162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  241 (346)
T ss_dssp             SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc
Confidence                       22111110                                                             


Q ss_pred             -------CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Q psy4391         151 -------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW  223 (231)
Q Consensus       151 -------~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vw  223 (231)
                             .+...+..+.+++++.+++... ++.+.+||+.+++.+..+...  ..+..++|+|||++|++++.|+.|+||
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~--~~~~~va~s~DG~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         242 THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVF  318 (346)
T ss_dssp             EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEESBSSEEEEE
T ss_pred             eEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCC--CCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence                   0111223445566666665554 467999999999887776543  346789999999999999999999999


Q ss_pred             eCCC
Q psy4391         224 DSYP  227 (231)
Q Consensus       224 d~~~  227 (231)
                      |...
T Consensus       319 D~~t  322 (346)
T d1jmxb_         319 NPDT  322 (346)
T ss_dssp             ETTT
T ss_pred             ECcc
Confidence            9754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1.1e-18  Score=136.74  Aligned_cols=169  Identities=11%  Similarity=0.002  Sum_probs=125.0

Q ss_pred             EeecccccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcE--EEEEe---cccccEEEEEECCCCCEE-EEecCCCcEE
Q psy4391          21 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--EKTIS---GHKLGISDVAWSSDSRLL-VSGSDDKTLK   94 (231)
Q Consensus        21 ~~~~~h~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~--~~~~~---~~~~~v~~~~~~~~~~~l-~~~~~~g~i~   94 (231)
                      .++..| ..+..++|||||+++++++.||.+++||+.+++.  ...+.   ++...+.+..|+|||+++ +++..++.++
T Consensus        56 ~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~  134 (432)
T d1qksa2          56 TVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYV  134 (432)
T ss_dssp             EEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             EEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEE
Confidence            344444 4689999999999999999999999999877653  33333   334445556778899986 6778899999


Q ss_pred             EEeCCCceeeeeecCC-----------CcceEEEEECCCCCEEE-EeecCCcEEEEECCCCceeeecc-CCCCCeEEEEE
Q psy4391          95 IWELSSGKCLKTLKGH-----------SNYVFCCNFNPQSNLIV-SGSFDESVRIWDVRTGKCLKTLP-AHSDPVSAVHF  161 (231)
Q Consensus        95 ~~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~  161 (231)
                      +||.++++.+..+..+           ......+.++|++..++ +...++.+.+||..+++...... .+...+..++|
T Consensus       135 i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~  214 (432)
T d1qksa2         135 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL  214 (432)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred             EEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceE
Confidence            9999998877665432           23455678899988764 45667899999998776543322 23456789999


Q ss_pred             cCCCCeEEEEec-CCeEEEEeCCCCceeee
Q psy4391         162 NRDGSLIVSSSY-DGLCRIWDTASGQCLKT  190 (231)
Q Consensus       162 ~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~  190 (231)
                      +|+|+++++++. ++.+.++|..+++....
T Consensus       215 spdg~~~~va~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         215 DGSHRYFITAANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             CCCCCEEEEeccccceEEEeecccceEEEE
Confidence            999998877765 45888889887665443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=2.2e-18  Score=134.67  Aligned_cols=191  Identities=13%  Similarity=0.080  Sum_probs=140.0

Q ss_pred             ECCCCC--EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee--eec--
Q psy4391          35 FSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK--TLK--  108 (231)
Q Consensus        35 ~~~~~~--~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~--~~~--  108 (231)
                      ++.+.+  +++++..||.|++||..+++....+..+. .+..++|+|||+++++++.|+.+++||+.+++...  .++  
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence            445533  45678889999999999999999988764 58999999999999999999999999999876432  232  


Q ss_pred             -CCCcceEEEEECCCCCEEEEe-ecCCcEEEEECCCCceeeeccCCC-----------CCeEEEEEcCCCCeEEEEec-C
Q psy4391         109 -GHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKTLPAHS-----------DPVSAVHFNRDGSLIVSSSY-D  174 (231)
Q Consensus       109 -~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~-d  174 (231)
                       ++...+.++.|+|||++++++ ..++.+.+||..++........+.           +....+.+++++..++.... .
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~  184 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  184 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence             334445667788999987555 578999999999988766554332           33455677777776665443 4


Q ss_pred             CeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeCC
Q psy4391         175 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDSY  226 (231)
Q Consensus       175 g~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~~  226 (231)
                      +.+.+++......+..........+..++++|+|++++++.. ++.+.+++..
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~  237 (426)
T d1hzua2         185 GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK  237 (426)
T ss_dssp             TEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETT
T ss_pred             CeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecc
Confidence            567677666655443333344556788999999998888765 5678888864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=3.6e-17  Score=122.81  Aligned_cols=145  Identities=14%  Similarity=0.198  Sum_probs=114.6

Q ss_pred             CEEEEEeCCCcEEEeecCCCcEEEEEecc--cccEEEEEECCCCCEE-EEecCCCcEEEEeCCCceeeeeecCCCc----
Q psy4391          40 EWLASSSADKLIKIWGAYDGKFEKTISGH--KLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKTLKGHSN----  112 (231)
Q Consensus        40 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~~~~~~~~~~~----  112 (231)
                      +++++++.|+.|++||..+++....+..+  ...+..++|+|||+++ ++++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            57899999999999999999888887643  3457789999999987 4667889999999999988777754432    


Q ss_pred             -ceEEEEECCCCCEEEEeec------------CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEE
Q psy4391         113 -YVFCCNFNPQSNLIVSGSF------------DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI  179 (231)
Q Consensus       113 -~v~~~~~~~~~~~l~~~~~------------d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  179 (231)
                       .+..++++|+++.++.+..            +..+.+||..+++....+..+ ..+..++|+|+|+++++++.+  +.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD--LHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS--EEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC--cce
Confidence             2346789999999987764            567889999999887776643 457788999999999988644  566


Q ss_pred             EeCCCCce
Q psy4391         180 WDTASGQC  187 (231)
Q Consensus       180 ~d~~~~~~  187 (231)
                      ||..+++.
T Consensus       159 ~d~~~~~~  166 (337)
T d1pbyb_         159 MDPEAGTL  166 (337)
T ss_dssp             EETTTTEE
T ss_pred             eeeecCcE
Confidence            77766543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.78  E-value=4.6e-16  Score=114.97  Aligned_cols=178  Identities=13%  Similarity=0.188  Sum_probs=141.7

Q ss_pred             EEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEE-EEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECC
Q psy4391          43 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLL-VSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNP  121 (231)
Q Consensus        43 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~  121 (231)
                      ++++.++.|.+||..+++....+... ..+..++|+|||+++ +++..++.|++||+.+++.+..+..+. .+..+.+++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~   83 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP   83 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence            45678899999999999888887654 457889999999987 466788999999999999888887654 467889999


Q ss_pred             CCCEEEEe-ecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEE-EEecCCeEEEEeCCCCceeeeeecCCCCCe
Q psy4391         122 QSNLIVSG-SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDGLCRIWDTASGQCLKTLIDDDNPPV  199 (231)
Q Consensus       122 ~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i  199 (231)
                      ++..++.. ..++.+.+|+..+++....+..+ .....+.++|++..++ ++..++.+.+|+..+.+....+...  ...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  160 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--RSP  160 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--SSE
T ss_pred             ccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC--CCc
Confidence            99876654 56778999999999887777654 4678899999999875 4556788999999998877665433  345


Q ss_pred             EEEEECCCCCEEEEEeCC-CeEEEEeC
Q psy4391         200 SFVKFSPNGKYILAATLD-NTLKLWDS  225 (231)
Q Consensus       200 ~~~~~s~~g~~l~~~s~d-~~v~vwd~  225 (231)
                      ..++++|+++.+++++.+ +.+.+|+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVIDT  187 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             eEEEeeccccceeeecccccccccccc
Confidence            778999999988888765 56666664

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4.6e-16  Score=116.72  Aligned_cols=201  Identities=12%  Similarity=0.188  Sum_probs=128.7

Q ss_pred             ccccceEEEEECCCCCEEEEEe-CCCcEEEeecCCCcEEEEEe---cccccEEEEEECCCCCEEEEecC-CCcEEEEeCC
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTIS---GHKLGISDVAWSSDSRLLVSGSD-DKTLKIWELS   99 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-~g~i~~~d~~   99 (231)
                      .|.+.+..++|+|||++|++++ .|+.|++|++........+.   .....+..++|+|||+++++++. ++.+.+|+..
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~  113 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE  113 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence            5778899999999999886554 58999999987554322221   22344667999999999988774 6788998877


Q ss_pred             Cceeeee--ecCCCcceEEEEECCCCCEEEEeec-CCcEEEEECCCCceee-----------------------------
Q psy4391         100 SGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLK-----------------------------  147 (231)
Q Consensus       100 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~-----------------------------  147 (231)
                      .......  ...+...+.++.++|+++.++.++. +..+.+|+........                             
T Consensus       114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~  193 (333)
T d1ri6a_         114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC  193 (333)
T ss_dssp             TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred             cccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEe
Confidence            6543322  2233445566778888887776654 3456666654321000                             


Q ss_pred             ------------------------ec------cCCCCCeEEEEEcCCCCeEEEE-ecCCeEEEEeCCCCceeeeeec--C
Q psy4391         148 ------------------------TL------PAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQCLKTLID--D  194 (231)
Q Consensus       148 ------------------------~~------~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~--~  194 (231)
                                              ..      .........+++++++++++.. ..++.+.+|++...........  .
T Consensus       194 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (333)
T d1ri6a_         194 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP  273 (333)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred             eccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeC
Confidence                                    00      0011234557788888866554 4567888887765433222211  1


Q ss_pred             CCCCeEEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         195 DNPPVSFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       195 ~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      .......++|+|||++|++++. ++.|++|+.
T Consensus       274 ~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         274 TETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             CSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            2223456899999999887765 589999953

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.75  E-value=1.7e-15  Score=115.63  Aligned_cols=199  Identities=11%  Similarity=0.019  Sum_probs=133.8

Q ss_pred             ccccceEEEEECCCCCEEEEEe-----CCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec----------C
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSS-----ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------D   89 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~-----~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~   89 (231)
                      .+...+..++++|||+.++...     ..+.+.+||..+++....+..+...  .++|+|||++++++.          .
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccccc
Confidence            5678899999999999887642     3457999999999988887655433  689999999998864          3


Q ss_pred             CCcEEEEeCCCceeeeeecCCC-----------------------------------------------cceEEEEECCC
Q psy4391          90 DKTLKIWELSSGKCLKTLKGHS-----------------------------------------------NYVFCCNFNPQ  122 (231)
Q Consensus        90 ~g~i~~~d~~~~~~~~~~~~~~-----------------------------------------------~~v~~~~~~~~  122 (231)
                      ++.|.+||..+++.+..+..+.                                               ....++.++|+
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  175 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPG  175 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecC
Confidence            5779999998876543322110                                               11123456666


Q ss_pred             CCEE-EEeecCCcEEEEECCCCceeeeccC--------------------------CC----------------------
Q psy4391         123 SNLI-VSGSFDESVRIWDVRTGKCLKTLPA--------------------------HS----------------------  153 (231)
Q Consensus       123 ~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~--------------------------~~----------------------  153 (231)
                      ++.+ ++.+.|+.+.+||...+........                          ..                      
T Consensus       176 g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  255 (373)
T d2madh_         176 APSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDAL  255 (373)
T ss_pred             CCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccc
Confidence            6544 5677888999998765433211100                          00                      


Q ss_pred             -----------CCeEEEEEcCCCCeEE----------EEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCE--
Q psy4391         154 -----------DPVSAVHFNRDGSLIV----------SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY--  210 (231)
Q Consensus       154 -----------~~v~~~~~~~~~~~l~----------~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~--  210 (231)
                                 .....+++++++..++          ....++.+.+||..+++.+..+..  ...+..++|+|||+.  
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~--~~~~~~~a~spDG~~~l  333 (373)
T d2madh_         256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDL  333 (373)
T ss_pred             cCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC--CCCeeEEEECCCCCEEE
Confidence                       0112234555555433          344566788999999887776543  345678999999984  


Q ss_pred             EEEEeCCCeEEEEeCCC
Q psy4391         211 ILAATLDNTLKLWDSYP  227 (231)
Q Consensus       211 l~~~s~d~~v~vwd~~~  227 (231)
                      +++++.|+.|+|||...
T Consensus       334 ~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         334 YALSAGTEVLHIYDAGA  350 (373)
T ss_pred             EEEeCCCCeEEEEECCC
Confidence            46788899999999743

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.2e-15  Score=115.51  Aligned_cols=195  Identities=12%  Similarity=0.121  Sum_probs=133.1

Q ss_pred             eEEEEECCCCCEEEEE----------eCCCcEEEeecCCCcEEEEEecccc-------cEEEEEECCCCCEEEEec--CC
Q psy4391          30 VSSVKFSPNGEWLASS----------SADKLIKIWGAYDGKFEKTISGHKL-------GISDVAWSSDSRLLVSGS--DD   90 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~----------~~dg~i~i~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~--~~   90 (231)
                      ...++|+|||++|+++          ..++.|++||..+++....+..+..       ....++|+|+++.++.+.  .+
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence            3478999999988754          3478999999999988777653221       234578999999887664  45


Q ss_pred             CcEEEEeCCCceeeeeecCCCc---------------------------------------------ceEEEEECCCCCE
Q psy4391          91 KTLKIWELSSGKCLKTLKGHSN---------------------------------------------YVFCCNFNPQSNL  125 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~~~~---------------------------------------------~v~~~~~~~~~~~  125 (231)
                      ..+.+|+..+++....+.....                                             .+....+.+++..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (355)
T d2bbkh_         129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR  208 (355)
T ss_dssp             CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCe
Confidence            6789999988765544332110                                             0111234445566


Q ss_pred             EEEeecCCcEEEEECCCCceeee--ccCC----------CCCeEEEEEcCCCCeEEEEecC----------CeEEEEeCC
Q psy4391         126 IVSGSFDESVRIWDVRTGKCLKT--LPAH----------SDPVSAVHFNRDGSLIVSSSYD----------GLCRIWDTA  183 (231)
Q Consensus       126 l~~~~~d~~i~v~d~~~~~~~~~--~~~~----------~~~v~~~~~~~~~~~l~~~~~d----------g~i~v~d~~  183 (231)
                      ++.++.++.+++|++..+.....  ...+          ......+++++++..++....+          ..+.+||..
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~  288 (355)
T d2bbkh_         209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK  288 (355)
T ss_dssp             EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCC
Confidence            77788889999999887653211  1111          1223457889999988766543          369999999


Q ss_pred             CCceeeeeecCCCCCeEEEEECCCCC--EEEEEeCCCeEEEEeCC
Q psy4391         184 SGQCLKTLIDDDNPPVSFVKFSPNGK--YILAATLDNTLKLWDSY  226 (231)
Q Consensus       184 ~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~s~d~~v~vwd~~  226 (231)
                      +++.+..+...  ..+..++|+|||+  +++++..|+.|.|||..
T Consensus       289 t~~~~~~~~~~--~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         289 TGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             TCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             CCcEEEEecCC--CCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            99887766543  2356799999998  34566779999999964

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=5.9e-14  Score=104.99  Aligned_cols=184  Identities=13%  Similarity=0.229  Sum_probs=126.8

Q ss_pred             EEEEeCCCcEEEeecCCCcEEE--EEecccccEEEEEECCCCCEEEEe-cCCCcEEEEeCCCceeeeee---cCCCcceE
Q psy4391          42 LASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSDSRLLVSG-SDDKTLKIWELSSGKCLKTL---KGHSNYVF  115 (231)
Q Consensus        42 l~~~~~dg~i~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~~~g~i~~~d~~~~~~~~~~---~~~~~~v~  115 (231)
                      ++++..++.|++|++.......  ....+...+..++|+|||++|+++ ..++.|++|++........+   ......+.
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~   86 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT   86 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce
Confidence            3566789999999986543222  223456778999999999998555 45899999998764322221   12234456


Q ss_pred             EEEECCCCCEEEEeec-CCcEEEEECCCCceeee--ccCCCCCeEEEEEcCCCCeEEEEec-CCeEEEEeCCCCceeee-
Q psy4391         116 CCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSY-DGLCRIWDTASGQCLKT-  190 (231)
Q Consensus       116 ~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~-  190 (231)
                      .++|+|+|+++++++. ++.+.+|+.........  ...+...+.++.++|+++++++++. +..+.+|+......... 
T Consensus        87 ~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~  166 (333)
T d1ri6a_          87 HISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ  166 (333)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred             EEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceee
Confidence            7899999999998875 66789998776654322  2344556778899999998887764 46789998766432221 


Q ss_pred             ----eecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeC
Q psy4391         191 ----LIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       191 ----~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~  225 (231)
                          ...........++|++++.+++... ..+...+|+.
T Consensus       167 ~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         167 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             eceeeeeecCCCccEEEEeccceeEEeeccccCceEEEee
Confidence                1222334456799999999887665 4567777774

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=1.6e-13  Score=104.64  Aligned_cols=195  Identities=11%  Similarity=0.000  Sum_probs=121.8

Q ss_pred             EEEEECCCCCEEEEEe----------CCCcEEEeecCCCcEEEEEecccc-------cEEEEEECCCCCEEEEec-CCCc
Q psy4391          31 SSVKFSPNGEWLASSS----------ADKLIKIWGAYDGKFEKTISGHKL-------GISDVAWSSDSRLLVSGS-DDKT   92 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~----------~dg~i~i~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~~g~   92 (231)
                      ..++|+|||+.|++++          .|+.|++||..+++....+..+..       ....++|+|||++++++. .++.
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~  147 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe
Confidence            3689999999888654          367899999999988777653221       123589999999998775 5789


Q ss_pred             EEEEeCCCceeeeeecCCCcc-------eEEEEECCCCCEEEEee-----------------------------------
Q psy4391          93 LKIWELSSGKCLKTLKGHSNY-------VFCCNFNPQSNLIVSGS-----------------------------------  130 (231)
Q Consensus        93 i~~~d~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~-----------------------------------  130 (231)
                      +.+||+.+++....+..+...       ...+.+++++.+++...                                   
T Consensus       148 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  227 (368)
T d1mdah_         148 AAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW  227 (368)
T ss_dssp             EEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred             EEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE
Confidence            999999998876665432211       11223333333322221                                   


Q ss_pred             -cCCcEEEEECCCCceeeec--cCC----------CCCeEEEEEcCCCCeEEEEecC---------CeEEEEeCCCCcee
Q psy4391         131 -FDESVRIWDVRTGKCLKTL--PAH----------SDPVSAVHFNRDGSLIVSSSYD---------GLCRIWDTASGQCL  188 (231)
Q Consensus       131 -~d~~i~v~d~~~~~~~~~~--~~~----------~~~v~~~~~~~~~~~l~~~~~d---------g~i~v~d~~~~~~~  188 (231)
                       .++.+++++...+......  ...          ......++++|++..++....+         ..+.+||..+++.+
T Consensus       228 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~  307 (368)
T d1mdah_         228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS  307 (368)
T ss_dssp             CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE
T ss_pred             ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe
Confidence             1223333443332211110  000          0112346788888877654322         25889999999877


Q ss_pred             eeeecCCCCCeEEEEECCCCCE--EEEEeCCCeEEEEeCCC
Q psy4391         189 KTLIDDDNPPVSFVKFSPNGKY--ILAATLDNTLKLWDSYP  227 (231)
Q Consensus       189 ~~~~~~~~~~i~~~~~s~~g~~--l~~~s~d~~v~vwd~~~  227 (231)
                      ..+...  ..+..++|+|||+.  ++++..|+.|.|||...
T Consensus       308 ~~~~~~--~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         308 GPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             ECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             EEecCC--CceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            766433  34667999999973  35566789999999643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.58  E-value=2.7e-14  Score=107.18  Aligned_cols=149  Identities=13%  Similarity=0.064  Sum_probs=109.8

Q ss_pred             EEECCCCCEEEEecCCCcEEEEeCCCceeeeeecC-CCcceEEEEECCCCCEEEE-eecCCcEEEEECCCCceeeeccCC
Q psy4391          75 VAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVRTGKCLKTLPAH  152 (231)
Q Consensus        75 ~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~  152 (231)
                      ++++++++++++++.++.|.+||+++++.+..++. +...+..+.|+|||+++++ +..++.|++||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            46889999999999999999999999998887763 3445678999999998754 557899999999999877665432


Q ss_pred             CC------CeEEEEEcCCCCeEEEEe------------cCCeEEEEeCCCCceeeeeecC-CCCCeEEEEECCCCCEEEE
Q psy4391         153 SD------PVSAVHFNRDGSLIVSSS------------YDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILA  213 (231)
Q Consensus       153 ~~------~v~~~~~~~~~~~l~~~~------------~dg~i~v~d~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~  213 (231)
                      ..      .+..++|+|||++++++.            .++.+.+||..+++....+... ....+..+.++++++.++.
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            21      345689999999987765            3677888988877654433221 1223445667777776553


Q ss_pred             EeCCCeEEEEeCC
Q psy4391         214 ATLDNTLKLWDSY  226 (231)
Q Consensus       214 ~s~d~~v~vwd~~  226 (231)
                         ++.+.+||..
T Consensus       162 ---~~~~~~~~~~  171 (346)
T d1jmxb_         162 ---GPDIYKMDVK  171 (346)
T ss_dssp             ---SSSEEEECTT
T ss_pred             ---CCcceEEEcc
Confidence               3567888853

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=1.2e-12  Score=98.75  Aligned_cols=185  Identities=14%  Similarity=0.131  Sum_probs=125.9

Q ss_pred             EECCCCCEEEEEe-----CCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec----------CCCcEEEEeC
Q psy4391          34 KFSPNGEWLASSS-----ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKTLKIWEL   98 (231)
Q Consensus        34 ~~~~~~~~l~~~~-----~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~g~i~~~d~   98 (231)
                      +.+|||+++++..     .++.+.+||..+++....+..+..+  .++|+|||++|++++          .++.|++||.
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            5689999987653     3557999999999888877654433  689999999887643          4788999999


Q ss_pred             CCceeeeeecCCC-------cceEEEEECCCCCEEEEee--cCCcEEEEECCCCceeeeccCCCC-------CeEEEEEc
Q psy4391          99 SSGKCLKTLKGHS-------NYVFCCNFNPQSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSD-------PVSAVHFN  162 (231)
Q Consensus        99 ~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~-------~v~~~~~~  162 (231)
                      .+++....+..+.       .....+.|+|+++.++..+  .+..+.+||..+++.+..+.....       ....+.++
T Consensus        86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (355)
T d2bbkh_          86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHC  165 (355)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEc
Confidence            9988776654221       1223468999999887765  456789999999987776654321       12335566


Q ss_pred             CCCCeEEEEe-cCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         163 RDGSLIVSSS-YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       163 ~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ++++.++... .++.+.+++......      .....+....+++++..++.++.++.+.+|+..
T Consensus       166 ~dg~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  224 (355)
T d2bbkh_         166 RDGSLAKVAFGTEGTPEITHTEVFHP------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS  224 (355)
T ss_dssp             TTSCEEEEECCSSSCCEEEECCCCSC------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECT
T ss_pred             CCCCEEEEEecCCCeEEEEecccccc------eecceeeeccccCCCCeEEEecCCCeEEEEecC
Confidence            6666555433 234444554433321      112223345677788888888999999999863

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.50  E-value=5.6e-13  Score=104.85  Aligned_cols=147  Identities=16%  Similarity=0.233  Sum_probs=110.7

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCCceeeeeec-----CCCcceEEEEECCCCCEEEEeec---------CCcEEEEE
Q psy4391          74 DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK-----GHSNYVFCCNFNPQSNLIVSGSF---------DESVRIWD  139 (231)
Q Consensus        74 ~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~v~d  139 (231)
                      .+.|.++++++..  .++.+.+||+.+++....+.     .+...+.+..|+|||+.|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4689999987754  46789999999987655443     33456889999999999998754         46788999


Q ss_pred             CCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCC-----------------CCCeEEE
Q psy4391         140 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-----------------NPPVSFV  202 (231)
Q Consensus       140 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----------------~~~i~~~  202 (231)
                      +.+++ +..+..+...+..+.|+|||+.+|.. .++.+.+|+..+++..+......                 ......+
T Consensus        99 ~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~  176 (470)
T d2bgra1          99 LNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (470)
T ss_dssp             TTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             CCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence            99887 45677788889999999999999985 57889999998887554332111                 1123457


Q ss_pred             EECCCCCEEEEEeCCCe-EEEEe
Q psy4391         203 KFSPNGKYILAATLDNT-LKLWD  224 (231)
Q Consensus       203 ~~s~~g~~l~~~s~d~~-v~vwd  224 (231)
                      .|||||++|+....|.. |..|+
T Consensus       177 ~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         177 WWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             EECTTSSEEEEEEEECTTCCEEE
T ss_pred             EECCCCCccceeEecCCcCceEE
Confidence            79999999999887543 55444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.43  E-value=1e-10  Score=88.59  Aligned_cols=177  Identities=11%  Similarity=0.056  Sum_probs=117.6

Q ss_pred             cccceEEEEECCCCCEE-EEEeCCCcEEEeecCCCcEEEEEecc------cccEEEEEECCCCCEEEEecCCCcEEEEeC
Q psy4391          26 HTKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKTISGH------KLGISDVAWSSDSRLLVSGSDDKTLKIWEL   98 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l-~~~~~dg~i~i~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~   98 (231)
                      +.....++.++|+|+.+ ++...|+.+.+|+...+.........      ........+.+++. ++..+.++.+.+|+.
T Consensus       163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~  241 (373)
T d2madh_         163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADI  241 (373)
T ss_pred             EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEc
Confidence            34456688899999855 57788999999998877655544321      11233455666554 445567888999988


Q ss_pred             CCceeeee--ecCC----------CcceEEEEECCCCCE----------EEEeecCCcEEEEECCCCceeeeccCCCCCe
Q psy4391          99 SSGKCLKT--LKGH----------SNYVFCCNFNPQSNL----------IVSGSFDESVRIWDVRTGKCLKTLPAHSDPV  156 (231)
Q Consensus        99 ~~~~~~~~--~~~~----------~~~v~~~~~~~~~~~----------l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v  156 (231)
                      .+......  ....          ......+.+++++..          ++....++.+.+||+.+++.+..+. +...+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~  320 (373)
T d2madh_         242 SAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDV  320 (373)
T ss_pred             CCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCe
Confidence            76543211  1111          111223445555544          3445566789999999999888765 45678


Q ss_pred             EEEEEcCCCCe--EEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEEC
Q psy4391         157 SAVHFNRDGSL--IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS  205 (231)
Q Consensus       157 ~~~~~~~~~~~--l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s  205 (231)
                      ..++|+|||+.  +++++.|+.|++||+.+++.+.++......+ ..+++.
T Consensus       321 ~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P-~~l~~~  370 (373)
T d2madh_         321 DAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGP-QVLSVM  370 (373)
T ss_pred             eEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCC-cEEEEe
Confidence            89999999984  4678899999999999999888875433322 344443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.41  E-value=2.4e-12  Score=101.20  Aligned_cols=140  Identities=13%  Similarity=0.206  Sum_probs=107.8

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecc-----cccEEEEEECCCCCEEEEecC---------CCcEEEE
Q psy4391          31 SSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-----KLGISDVAWSSDSRLLVSGSD---------DKTLKIW   96 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~---------~g~i~~~   96 (231)
                      ..+.|.++++++..  .++.+.+|+..+++....+..+     ...+.++.|+|||++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35789999988764  5788999999998876655433     356889999999999988753         4678999


Q ss_pred             eCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC------------------CCCeEE
Q psy4391          97 ELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH------------------SDPVSA  158 (231)
Q Consensus        97 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------------------~~~v~~  158 (231)
                      |+++++. ..+..+...+....|+|||+.+|.. .++.+++|+..+++.......+                  .+....
T Consensus        98 d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          98 DLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             ETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             ECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            9998875 4566677788899999999999985 4678999999888765433211                  123355


Q ss_pred             EEEcCCCCeEEEEecC
Q psy4391         159 VHFNRDGSLIVSSSYD  174 (231)
Q Consensus       159 ~~~~~~~~~l~~~~~d  174 (231)
                      +.|+|||+.|+....|
T Consensus       176 ~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EEECTTSSEEEEEEEE
T ss_pred             cEECCCCCccceeEec
Confidence            7899999999987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=4.8e-10  Score=81.12  Aligned_cols=195  Identities=8%  Similarity=-0.018  Sum_probs=131.8

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecC
Q psy4391          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG  109 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~  109 (231)
                      ...++++++|.++++...++.+++++..+........ ......++++.++++.+++-..+..+..++............
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeec
Confidence            4678899999887776666667666654443332222 224578899999998877766666777777654332221112


Q ss_pred             CCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceee
Q psy4391         110 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK  189 (231)
Q Consensus       110 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~  189 (231)
                      .......++++++++++++...++.|..+|...................++++++|.++++....+.|..++...... .
T Consensus       138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~  216 (260)
T d1rwia_         138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-T  216 (260)
T ss_dssp             SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-E
T ss_pred             ccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-E
Confidence            223456788999999888888888999999875543333223445678899999999888887788898887755432 2


Q ss_pred             eeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         190 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       190 ~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      .+....-.....|+++++|.++++-..+++|+.+++.
T Consensus       217 ~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         217 VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             ECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            2211222234679999999887777778899988764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.37  E-value=8.8e-11  Score=90.40  Aligned_cols=181  Identities=14%  Similarity=0.108  Sum_probs=120.4

Q ss_pred             EEEEeCCCcEEEeecCCCcEEEEEec------------------------------ccccEEEEEECCCCCEEEEe-cCC
Q psy4391          42 LASSSADKLIKIWGAYDGKFEKTISG------------------------------HKLGISDVAWSSDSRLLVSG-SDD   90 (231)
Q Consensus        42 l~~~~~dg~i~i~~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~-~~~   90 (231)
                      +++++.+|.|++|++.+++..+.+.-                              |.........+|||+++++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            45778899999999988877766531                              11223334456899988655 467


Q ss_pred             CcEEEEeCCCceeeeeecC-CCcceEEEEECCCCCE--EEEeecCC-----------------cEEEEECCCCceeeecc
Q psy4391          91 KTLKIWELSSGKCLKTLKG-HSNYVFCCNFNPQSNL--IVSGSFDE-----------------SVRIWDVRTGKCLKTLP  150 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~~~~~d~-----------------~i~v~d~~~~~~~~~~~  150 (231)
                      ..|.++|+++++....+.. ....+..++++|+++.  ++..+.+.                 .+..+|..+.+....+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            8999999999987776643 3456788999999984  44333322                 13457877777666655


Q ss_pred             CCCCCeEEEEEcCCCCeEEEEecCC-----------------------------------------eEEEEeCCCCceee
Q psy4391         151 AHSDPVSAVHFNRDGSLIVSSSYDG-----------------------------------------LCRIWDTASGQCLK  189 (231)
Q Consensus       151 ~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------------------------~i~v~d~~~~~~~~  189 (231)
                      .. +....+.++|+|+++++.+.+.                                         .+.+++....+.+.
T Consensus       174 v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~  252 (441)
T d1qnia2         174 VD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR  252 (441)
T ss_dssp             ES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred             cC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence            43 3456789999999988776542                                         23333333333344


Q ss_pred             eeecCCCCCeEEEEECCCCCEEEE-EeCCCeEEEEeC
Q psy4391         190 TLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDS  225 (231)
Q Consensus       190 ~~~~~~~~~i~~~~~s~~g~~l~~-~s~d~~v~vwd~  225 (231)
                      .+..... + ..+.++|||+++++ +..++.|.|||.
T Consensus       253 ~IPvgks-P-hGv~vSPDGkyl~~~~~~~~tvsv~d~  287 (441)
T d1qnia2         253 YIPVPKN-P-HGLNTSPDGKYFIANGKLSPTVSVIAI  287 (441)
T ss_dssp             EECCBSS-C-CCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred             EEeCCCC-c-cCceECCCCCEEEEeCCcCCcEEEEEe
Confidence            4433222 2 45889999998865 567899999995

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.36  E-value=4.6e-10  Score=81.19  Aligned_cols=198  Identities=10%  Similarity=-0.002  Sum_probs=129.0

Q ss_pred             ccceEEEEECCCCCEEEEE-eCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee
Q psy4391          27 TKAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      .-.-..++++++|...++. ...+.+..++...................++++++++.+++....+.+++++..+.....
T Consensus        13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            3445799999999966654 445667766554332222212222345678999999877777666677766655544433


Q ss_pred             eecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCC
Q psy4391         106 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG  185 (231)
Q Consensus       106 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  185 (231)
                      ... .......++++++++++++-..+..+..++...................++++++++.+++...++.|..+|....
T Consensus        93 ~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~  171 (260)
T d1rwia_          93 PFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  171 (260)
T ss_dssp             CCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eee-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence            332 2345678999999998887777777888876554322221222334578999999998888888889999998765


Q ss_pred             ceeeeeecCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         186 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       186 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      .... +..........++++++|.++++....++|..++..
T Consensus       172 ~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         172 NQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             CEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred             eeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCC
Confidence            4322 222222334679999999988888778889888753

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.36  E-value=7.5e-10  Score=81.84  Aligned_cols=187  Identities=12%  Similarity=0.148  Sum_probs=122.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc--eeeee
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG--KCLKT  106 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~--~~~~~  106 (231)
                      .+..++++|||+++++...++.|..++.. +. ...+......+..++|+++|+++++...++.+..++....  .....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            57899999999999998889988888754 33 2334444567889999999998888888888888776432  21111


Q ss_pred             ec-CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCcee---------------------------------------
Q psy4391         107 LK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCL---------------------------------------  146 (231)
Q Consensus       107 ~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---------------------------------------  146 (231)
                      .. ........+.+.++++++++...++.+..+|...+...                                       
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~  186 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML  186 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCe
Confidence            11 22344667888888888877777777776666543210                                       


Q ss_pred             -eecc-------------CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEE---CCCCC
Q psy4391         147 -KTLP-------------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF---SPNGK  209 (231)
Q Consensus       147 -~~~~-------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~---s~~g~  209 (231)
                       ..+.             ........++++++|.++++...++.|..++.........-........+.++|   ++|++
T Consensus       187 i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~  266 (302)
T d2p4oa1         187 LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCT  266 (302)
T ss_dssp             EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred             EEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCC
Confidence             0000             001122347888999887777778889988876432211111122234678999   77888


Q ss_pred             EEEEEeCC
Q psy4391         210 YILAATLD  217 (231)
Q Consensus       210 ~l~~~s~d  217 (231)
                      .|++++..
T Consensus       267 ~Lyvtt~~  274 (302)
T d2p4oa1         267 AIYVVTNG  274 (302)
T ss_dssp             EEEEEECT
T ss_pred             EEEEECCC
Confidence            88877654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.33  E-value=7.8e-11  Score=90.71  Aligned_cols=199  Identities=9%  Similarity=0.057  Sum_probs=130.8

Q ss_pred             ccccceEEEEECCCCCEEEEE-eCCCcEEEeecCCCcEEEEEec-ccccEEEEEECCCCCEE--EEecCCC---------
Q psy4391          25 GHTKAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSRLL--VSGSDDK---------   91 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l--~~~~~~g---------   91 (231)
                      .|.........+|||++|++. ..++.|.++|..+.+....+.- ....+..++|+|+++.+  +..+.+.         
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence            466667777778999988665 4678999999999887776653 35578899999999853  3333221         


Q ss_pred             --------cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCC------------------------------
Q psy4391          92 --------TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE------------------------------  133 (231)
Q Consensus        92 --------~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------------------  133 (231)
                              .+..+|..+.+...++... .....+.++|+|+++++.+.+.                              
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             cccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                    2345777776665555433 2355688999999888776442                              


Q ss_pred             -----------cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEE-EEecCCeEEEEeCCCCcee--------eeee-
Q psy4391         134 -----------SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDGLCRIWDTASGQCL--------KTLI-  192 (231)
Q Consensus       134 -----------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~--------~~~~-  192 (231)
                                 .+.+++......+..+..... ...+.++|||++++ ++..++++.+||+.+.+..        ..+. 
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             CCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence                       222333333333444444333 35689999999876 4667899999998642210        0111 


Q ss_pred             -cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         193 -DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       193 -~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                       ..........+|+++|..+.+...|.+|..|+.
T Consensus       307 ~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         307 EPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             CCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             ecccccCcccceecCCceEEEcccccceEEEecc
Confidence             111122344689999988888889999999984

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=2.3e-08  Score=72.79  Aligned_cols=153  Identities=17%  Similarity=0.298  Sum_probs=100.3

Q ss_pred             EEEECCCCCEEEEecCCCcEEEEeCCCceeeeee--cCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc-
Q psy4391          74 DVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-  150 (231)
Q Consensus        74 ~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-  150 (231)
                      .+++.++++.+++....+.+.+++.. ++.+..+  ..+......++++++++++++....+.|++||.. ++.+..+. 
T Consensus       118 ~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~  195 (279)
T d1q7fa_         118 GVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGG  195 (279)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESC
T ss_pred             eeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceeeeecc
Confidence            34444445444444444445555543 3333333  2234456778889999988888888999999975 55555553 


Q ss_pred             -CCCCCeEEEEEcCCCCeEEEEec-CCeEEEEeCCCCceeeeeecCC-CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC
Q psy4391         151 -AHSDPVSAVHFNRDGSLIVSSSY-DGLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDSYP  227 (231)
Q Consensus       151 -~~~~~v~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~~  227 (231)
                       ........++++++|+++++-.. ++.|.+|+. +++.+..+.... ......+++.|+|.+++ ++.+++|++|....
T Consensus       196 ~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         196 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ  273 (279)
T ss_dssp             TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred             cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence             23345788999999997776544 457999985 566666654332 23457789999997554 56789999999866


Q ss_pred             CCC
Q psy4391         228 CLP  230 (231)
Q Consensus       228 ~~~  230 (231)
                      --|
T Consensus       274 ~~~  276 (279)
T d1q7fa_         274 LAP  276 (279)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=8.9e-09  Score=74.24  Aligned_cols=194  Identities=18%  Similarity=0.207  Sum_probs=116.6

Q ss_pred             cccceEEEEECCCCCEEEEEeCC-C--cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC-CCc--EEEEeCC
Q psy4391          26 HTKAVSSVKFSPNGEWLASSSAD-K--LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-DKT--LKIWELS   99 (231)
Q Consensus        26 h~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~--i~~~d~~   99 (231)
                      +...+...+|||||+.||..... +  .+.+.+...+.. ..+..+........|+|+|+.++.... .+.  +..+...
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~  115 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  115 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeecccc
Confidence            45667789999999999865433 3  345555544443 444445667788899999998876544 332  2233333


Q ss_pred             CceeeeeecCCCcceEEEEECCCCCEEEEee-cCC--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC-
Q psy4391         100 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS-FDE--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG-  175 (231)
Q Consensus       100 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-  175 (231)
                      ......... .........+++++..++..+ .++  .+.+.++..+.. ..............|+|+++.++..+.++ 
T Consensus       116 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~  193 (269)
T d2hqsa1         116 SGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGG  193 (269)
T ss_dssp             TCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             cccceeeee-ccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCC
Confidence            333222222 223334456777766555443 444  456667665543 33334455667789999999988766554 


Q ss_pred             --eEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC---CeEEEEeC
Q psy4391         176 --LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD---NTLKLWDS  225 (231)
Q Consensus       176 --~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d---~~v~vwd~  225 (231)
                        .+.+.+...+..  .+.. .........|||||+.|+..+..   ..|.+++.
T Consensus       194 ~~~i~~~~~~~~~~--~~~~-~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         194 QQHIAKQDLATGGV--QVLS-STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST  245 (269)
T ss_dssp             CEEEEEEETTTCCE--EECC-CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             ceeeeEeecccccc--eEee-cCccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence              455556655542  2222 23345668899999999876643   36777775

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.23  E-value=5e-08  Score=72.41  Aligned_cols=197  Identities=7%  Similarity=0.050  Sum_probs=126.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC----CCcEEEEeCCCcee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD----DKTLKIWELSSGKC  103 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----~g~i~~~d~~~~~~  103 (231)
                      ..+..++|.++|++.++-..++.|..|+..+......+.........++++++|+.+++...    .+.+...+..+...
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            34578999999997777667888998988776655555555566889999999987776543    23355555555443


Q ss_pred             eeeecC--CCcceEEEEECCCCCEEEEeecC------CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEE-EEecC
Q psy4391         104 LKTLKG--HSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD  174 (231)
Q Consensus       104 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d  174 (231)
                      ......  .......+.+.++|++.++....      +.+..++...+. +..+...-.....++|+|+++.|+ +-+..
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~~~~~~pnGia~s~dg~~lyvad~~~  198 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPIIQNISVANGIALSTDEKVLWVTETTA  198 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEeeccceeeeeeeccccceEEEecccC
Confidence            333321  12346678899999977764321      235555554332 222222223457799999998665 44567


Q ss_pred             CeEEEEeCCCC-ceee----eee--cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         175 GLCRIWDTASG-QCLK----TLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       175 g~i~v~d~~~~-~~~~----~~~--~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      +.|..||+... ....    ...  ......-..++++++|++.++....+.|.+||.
T Consensus       199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence            89999987532 1111    111  111112356899999998888888899999986

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.18  E-value=3.6e-08  Score=74.62  Aligned_cols=155  Identities=10%  Similarity=0.123  Sum_probs=98.6

Q ss_pred             cEEEEEECCCCCEEEEecC-CCcEEEEeCCCc-eee--eee--cCCCcceEEEEECCCCCEEEEee-cCCcEEEEECCCC
Q psy4391          71 GISDVAWSSDSRLLVSGSD-DKTLKIWELSSG-KCL--KTL--KGHSNYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTG  143 (231)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~-~g~i~~~d~~~~-~~~--~~~--~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~  143 (231)
                      .+..+.|+|+|+++++++. ...|.+|+.... ...  ...  .........+.|+|++++++... .++.|.+|++..+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4788999999998877754 457888876532 211  111  12345678899999999887665 4778999998765


Q ss_pred             ceeee-----cc--------------CCCCCeEEEEEcCCCCeEEEEec------CCeEEEEeCCCCceeeee---ec--
Q psy4391         144 KCLKT-----LP--------------AHSDPVSAVHFNRDGSLIVSSSY------DGLCRIWDTASGQCLKTL---ID--  193 (231)
Q Consensus       144 ~~~~~-----~~--------------~~~~~v~~~~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~---~~--  193 (231)
                      +....     ..              .+......+.++|||++|+++..      .+.|..|++.....+...   ..  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            42111     00              11123567899999999987643      234777776543222211   11  


Q ss_pred             CCCCCeEEEEECC-CCCEEEEEe-CCCeEEEEeC
Q psy4391         194 DDNPPVSFVKFSP-NGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       194 ~~~~~i~~~~~s~-~g~~l~~~s-~d~~v~vwd~  225 (231)
                      .....-..++++| +|++|+++. .++.|.+|+.
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            1112234588998 899887775 5789999974

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.15  E-value=6.5e-10  Score=84.25  Aligned_cols=154  Identities=8%  Similarity=-0.171  Sum_probs=103.5

Q ss_pred             cceEEEEECCCCCEE--EE-EeCCCc--EEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec----------CCCc
Q psy4391          28 KAVSSVKFSPNGEWL--AS-SSADKL--IKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS----------DDKT   92 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l--~~-~~~dg~--i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~~g~   92 (231)
                      +....++..++++..  +. +..+|.  +.+||..+++....+..+...  .++|+|||+.|++.+          .++.
T Consensus        20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCe
Confidence            344445567788853  22 334444  666788888888777665544  578999999988754          3667


Q ss_pred             EEEEeCCCceeeeeecCCC-------cceEEEEECCCCCEEEEee-cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCC
Q psy4391          93 LKIWELSSGKCLKTLKGHS-------NYVFCCNFNPQSNLIVSGS-FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD  164 (231)
Q Consensus        93 i~~~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~  164 (231)
                      |.+||..+++.+..+..+.       .....+.|+|||++++.+. .++.+.+||+.+++....+..+.....   +...
T Consensus        98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~  174 (368)
T d1mdah_          98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGA  174 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEE
T ss_pred             EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCC
Confidence            9999999988777664221       1123578999999998876 578999999999988777665443321   1112


Q ss_pred             CCeEEEEecCCeEEEEeCCCCc
Q psy4391         165 GSLIVSSSYDGLCRIWDTASGQ  186 (231)
Q Consensus       165 ~~~l~~~~~dg~i~v~d~~~~~  186 (231)
                      ...++..+.||.+.++++....
T Consensus       175 ~~~~v~~~~Dg~~~~~~~~~~~  196 (368)
T d1mdah_         175 AATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             TTEEECCCCTTSCEEEECCSSC
T ss_pred             CceEEEEcCCCCEEEEEecCCc
Confidence            3455556677777777765443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.11  E-value=4.1e-08  Score=72.73  Aligned_cols=192  Identities=13%  Similarity=0.184  Sum_probs=121.9

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec-cc----ccEEEEEECCCCCEEEEecC---------------
Q psy4391          30 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG-HK----LGISDVAWSSDSRLLVSGSD---------------   89 (231)
Q Consensus        30 i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~-~~----~~v~~~~~~~~~~~l~~~~~---------------   89 (231)
                      -..++|.++|..++++...+.+..++..... ...+.. ..    ....++++.++|+..++-..               
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~-~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~  151 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEK  151 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcE-EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccC
Confidence            4579999999988887777778887765433 222211 11    13577899999987776422               


Q ss_pred             CCcEEEEeCCCceeeeeecCCCcceEEEEECCCCC-----EEEEeecCCcEEEEECCCCceee------eccC-CCCCeE
Q psy4391          90 DKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSN-----LIVSGSFDESVRIWDVRTGKCLK------TLPA-HSDPVS  157 (231)
Q Consensus        90 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d~~i~v~d~~~~~~~~------~~~~-~~~~v~  157 (231)
                      .|.|..++.+ ++...... .......++|+|++.     +.++-+..+.|..||+.....+.      .+.. ......
T Consensus       152 ~G~v~~~~~d-g~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         152 FGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             CEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             CceEEEEeec-CceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence            2334444443 23222221 122345678887764     44555677889988876432221      1111 122356


Q ss_pred             EEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEE-EeCCCeEEEEeC
Q psy4391         158 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA-ATLDNTLKLWDS  225 (231)
Q Consensus       158 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~s~d~~v~vwd~  225 (231)
                      .+++..+|+++++....+.|.+||...++....+... ....+.++|.|+++.|++ .+.+|+|..++.
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p-~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECC-CCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            7999999998888777899999999887765554433 345678999999985544 556788888884

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.05  E-value=1.2e-07  Score=71.70  Aligned_cols=157  Identities=11%  Similarity=0.136  Sum_probs=100.2

Q ss_pred             ceEEEEECCCCCEEEEEeC-CCcEEEeecCC-CcEE--EEE--ecccccEEEEEECCCCCEEEE-ecCCCcEEEEeCCCc
Q psy4391          29 AVSSVKFSPNGEWLASSSA-DKLIKIWGAYD-GKFE--KTI--SGHKLGISDVAWSSDSRLLVS-GSDDKTLKIWELSSG  101 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~-dg~i~i~~~~~-~~~~--~~~--~~~~~~v~~~~~~~~~~~l~~-~~~~g~i~~~d~~~~  101 (231)
                      .+.++.|+|+|++++++.. ...|.+|+... +...  ...  .........++|+|+++++++ ...++.|.+|+....
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4679999999998887654 35777876543 2222  111  123456888999999998755 445789999998754


Q ss_pred             eee--e---eec--------------CCCcceEEEEECCCCCEEEEeec-C-----CcEEEEECCCCceee------ecc
Q psy4391         102 KCL--K---TLK--------------GHSNYVFCCNFNPQSNLIVSGSF-D-----ESVRIWDVRTGKCLK------TLP  150 (231)
Q Consensus       102 ~~~--~---~~~--------------~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~v~d~~~~~~~~------~~~  150 (231)
                      ...  .   .+.              ........+.++|+|++++++.. +     ..|..|++.....+.      ...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            321  1   110              11123456889999999988753 2     236677765432221      112


Q ss_pred             CCCCCeEEEEEcC-CCCeEEEEe-cCCeEEEEeCCCC
Q psy4391         151 AHSDPVSAVHFNR-DGSLIVSSS-YDGLCRIWDTASG  185 (231)
Q Consensus       151 ~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~v~d~~~~  185 (231)
                      ........++++| +|++|+++. .++.|.+|+....
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            2234456789998 789887665 5689999976544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.02  E-value=5.3e-07  Score=66.59  Aligned_cols=196  Identities=11%  Similarity=0.067  Sum_probs=120.6

Q ss_pred             ceEEEEECCCCCEEEEEeC-------CCcEEEeecCCCcEEEEEec----ccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          29 AVSSVKFSPNGEWLASSSA-------DKLIKIWGAYDGKFEKTISG----HKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~-------dg~i~i~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      ....++|.++|++.++...       +|.|..|+..++........    .......++|.++++.++++...+.+...+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence            4567899999997765332       46788888876654333221    122356799999998888877777788888


Q ss_pred             CCCceeeeeecCCC----cceEEEEECCCCCEEEEeec---------------CCcEEEEECCCCceeeeccCCCCCeEE
Q psy4391          98 LSSGKCLKTLKGHS----NYVFCCNFNPQSNLIVSGSF---------------DESVRIWDVRTGKCLKTLPAHSDPVSA  158 (231)
Q Consensus        98 ~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~---------------d~~i~v~d~~~~~~~~~~~~~~~~v~~  158 (231)
                      .+............    .....+.++++|++.++-..               .|.|..++.. ++.... ...-.....
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~-~~~~~~pNG  176 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAFQFPNG  176 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEESSEEE
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEe-eCCcceeee
Confidence            87654322111111    12456889999998887432               2334444443 222222 122223467


Q ss_pred             EEEcCCCC-----eEEEEecCCeEEEEeCCCCceeee---eec---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Q psy4391         159 VHFNRDGS-----LIVSSSYDGLCRIWDTASGQCLKT---LID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDSY  226 (231)
Q Consensus       159 ~~~~~~~~-----~l~~~~~dg~i~v~d~~~~~~~~~---~~~---~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~~  226 (231)
                      ++|+|++.     ++++-+..+.|..||+.....+..   +..   ........++++++|++.++....+.|.+||+.
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~  255 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence            88988764     444556778898888754322221   111   111223568999999988887778999999863

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.6e-08  Score=77.02  Aligned_cols=138  Identities=9%  Similarity=0.149  Sum_probs=94.0

Q ss_pred             EEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecc---cccEEEEEECCCCCEEEEecC---------CCcEEEEeCCC
Q psy4391          33 VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH---KLGISDVAWSSDSRLLVSGSD---------DKTLKIWELSS  100 (231)
Q Consensus        33 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~---------~g~i~~~d~~~  100 (231)
                      ..|.++++++.. ..+|.+.+|+..+++....+...   ...+....|+||+++++....         .+.+.+||+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            458888876654 56789999999877665545432   235667789999999877543         46788999998


Q ss_pred             ceeeeeec--CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCC-CC-----------------CeEEEE
Q psy4391         101 GKCLKTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-SD-----------------PVSAVH  160 (231)
Q Consensus       101 ~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~-----------------~v~~~~  160 (231)
                      ++......  .....+....|+|+|+.+|... ++.|.+.+...+..++..... .+                 .-.++.
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            76543322  2233344578999999998866 567888888766554433211 11                 124678


Q ss_pred             EcCCCCeEEEEe
Q psy4391         161 FNRDGSLIVSSS  172 (231)
Q Consensus       161 ~~~~~~~l~~~~  172 (231)
                      |||||++||...
T Consensus       180 WSPDgk~iaf~~  191 (465)
T d1xfda1         180 WSPDGTRLAYAA  191 (465)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCeEEEEE
Confidence            999999998764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.93  E-value=2.1e-06  Score=63.37  Aligned_cols=188  Identities=7%  Similarity=0.075  Sum_probs=117.4

Q ss_pred             ccceEEEEECCCCCEEEEEeC----CCcEEEeecCCCcEEEEEec--ccccEEEEEECCCCCEEEEecC------CCcEE
Q psy4391          27 TKAVSSVKFSPNGEWLASSSA----DKLIKIWGAYDGKFEKTISG--HKLGISDVAWSSDSRLLVSGSD------DKTLK   94 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~----dg~i~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------~g~i~   94 (231)
                      ......++++++|+++++...    .+.+...+............  ......++++.++|++.++...      .+.+.
T Consensus        81 ~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~  160 (319)
T d2dg1a1          81 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY  160 (319)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeE
Confidence            345678999999998776433    23344445444444333322  2345778999999987666432      12355


Q ss_pred             EEeCCCceeeeeecCCCcceEEEEECCCCCEEEEe-ecCCcEEEEECCCCc-eeee-------ccCCCCCeEEEEEcCCC
Q psy4391          95 IWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGK-CLKT-------LPAHSDPVSAVHFNRDG  165 (231)
Q Consensus        95 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~-~~~~-------~~~~~~~v~~~~~~~~~  165 (231)
                      .++.+.+.. ..+.........++|+|+++.|+.+ +..+.|..||+.... ....       ..........|+++.+|
T Consensus       161 ~~~~dg~~~-~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G  239 (319)
T d2dg1a1         161 YVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD  239 (319)
T ss_dssp             EECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC
T ss_pred             EEeccccee-EEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC
Confidence            555544332 2222222345678999999866544 567889999876421 1111       11112235679999999


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeeeecCC-----CCCeEEEEECCCCCEEEEEeC
Q psy4391         166 SLIVSSSYDGLCRIWDTASGQCLKTLIDDD-----NPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       166 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~~i~~~~~s~~g~~l~~~s~  216 (231)
                      ++.++....+.|.++|. .++.+.++....     ...+.+++|.+++..+++.+.
T Consensus       240 ~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         240 NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            98888888999999996 577776664332     223568899998887777654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=2.3e-06  Score=61.13  Aligned_cols=164  Identities=13%  Similarity=0.149  Sum_probs=98.9

Q ss_pred             cEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCC---cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEE
Q psy4391          50 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDK---TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLI  126 (231)
Q Consensus        50 ~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  126 (231)
                      .|.+.|.. +.....+......+...+|+|||+.||......   .+.+.+..++..... ..+........|+|+|..+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE-ECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEE-eeeecccccceecCCCCee
Confidence            46666664 434444444456688899999999998764433   466667766554433 3445667788999999988


Q ss_pred             EEeec-CCc--EEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCC--eEEEEeCCCCceeeeeecCCCCCeE
Q psy4391         127 VSGSF-DES--VRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDG--LCRIWDTASGQCLKTLIDDDNPPVS  200 (231)
Q Consensus       127 ~~~~~-d~~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~v~d~~~~~~~~~~~~~~~~~i~  200 (231)
                      +.... .+.  +..+....... ..............+++++..++.. ..+|  .+.+.++..+.....  ........
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~--~~~~~~~~  174 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI--TWEGSQNQ  174 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC--CCSSSEEE
T ss_pred             eEeeecCCccceeecccccccc-eeeeeccccccccccccccccceecccccCCceEeeeecccccceee--eccccccc
Confidence            87654 222  22333332222 2223334444556677777765544 3444  456667666543222  22334456


Q ss_pred             EEEECCCCCEEEEEeCCC
Q psy4391         201 FVKFSPNGKYILAATLDN  218 (231)
Q Consensus       201 ~~~~s~~g~~l~~~s~d~  218 (231)
                      ...|+|+|+.++..+.++
T Consensus       175 ~~~~spdg~~~~~~~~~~  192 (269)
T d2hqsa1         175 DADVSSDGKFMVMVSSNG  192 (269)
T ss_dssp             EEEECTTSSEEEEEEECS
T ss_pred             ccccccccceeEEEeecC
Confidence            678999999988877654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.4e-07  Score=73.63  Aligned_cols=183  Identities=11%  Similarity=0.144  Sum_probs=111.2

Q ss_pred             ceEEEEECCCCCEEEEEe---------CCCcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          29 AVSSVKFSPNGEWLASSS---------ADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~---------~dg~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      .+....||||+++++.+.         ..+...++|+.++.......  .....+....|+|||+.+|... ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            567788999999887653         24677888988776543322  2233455678999999998775 56788888


Q ss_pred             CCCceeeeeecCCC-cc-----------------eEEEEECCCCCEEEEeec-CCcE-----------------------
Q psy4391          98 LSSGKCLKTLKGHS-NY-----------------VFCCNFNPQSNLIVSGSF-DESV-----------------------  135 (231)
Q Consensus        98 ~~~~~~~~~~~~~~-~~-----------------v~~~~~~~~~~~l~~~~~-d~~i-----------------------  135 (231)
                      ..++...+...... ..                 -..+.|+|||+.||.... +..+                       
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~  220 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence            87766554443211 11                 136779999999988643 2223                       


Q ss_pred             ----------EEEECCCCceeeec------cCCCCCeEEEEEcCCCCeEEEEec-C---CeEEEEeCCCCceeeeeecCC
Q psy4391         136 ----------RIWDVRTGKCLKTL------PAHSDPVSAVHFNRDGSLIVSSSY-D---GLCRIWDTASGQCLKTLIDDD  195 (231)
Q Consensus       136 ----------~v~d~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~-d---g~i~v~d~~~~~~~~~~~~~~  195 (231)
                                .++|+.++......      ......+..+.|+|++++++.... +   ..+.++|..+++.........
T Consensus       221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~  300 (465)
T d1xfda1         221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES  300 (465)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred             cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC
Confidence                      33444333211110      011123567889999886655432 2   267888999987655443322


Q ss_pred             CCCe----EEEEECCCCCEEE
Q psy4391         196 NPPV----SFVKFSPNGKYIL  212 (231)
Q Consensus       196 ~~~i----~~~~~s~~g~~l~  212 (231)
                      ...|    ....|+|+|+.++
T Consensus       301 ~~wv~~~~~~p~~~~dg~~~~  321 (465)
T d1xfda1         301 EAWLHRQNEEPVFSKDGRKFF  321 (465)
T ss_dssp             SSCCCCCCCCCEECTTSCSEE
T ss_pred             CceEeccCCceeEccCCCeeE
Confidence            2211    2357899998543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.83  E-value=2.2e-06  Score=61.97  Aligned_cols=154  Identities=16%  Similarity=0.281  Sum_probs=108.3

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEe--cccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee
Q psy4391          28 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--GHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK  105 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~  105 (231)
                      .....++..++|+++++....+.+.+++. +++....+.  .+......+++.++++.+++....+.|++||.. ++.+.
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~  191 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLR  191 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEE
T ss_pred             cccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceee
Confidence            34567788888887777666677777765 345555442  234457788999999888888888999999975 45555


Q ss_pred             eec--CCCcceEEEEECCCCCEEEEeec-CCcEEEEECCCCceeeeccCC--CCCeEEEEEcCCCCeEEEEecCCeEEEE
Q psy4391         106 TLK--GHSNYVFCCNFNPQSNLIVSGSF-DESVRIWDVRTGKCLKTLPAH--SDPVSAVHFNRDGSLIVSSSYDGLCRIW  180 (231)
Q Consensus       106 ~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~v~  180 (231)
                      .+.  +.......++++++|+++++-.. ++.|.+|+. .|+.+..+...  ......+++.|+|.+++ +..+..|++|
T Consensus       192 ~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~f  269 (279)
T d1q7fa_         192 QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIY  269 (279)
T ss_dssp             EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEE
T ss_pred             eecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEE
Confidence            553  23445778999999998877543 457999985 46665555322  23578899999997554 5578899999


Q ss_pred             eCCCC
Q psy4391         181 DTASG  185 (231)
Q Consensus       181 d~~~~  185 (231)
                      .....
T Consensus       270 r~~~~  274 (279)
T d1q7fa_         270 RYVQL  274 (279)
T ss_dssp             ECSCC
T ss_pred             Eeeee
Confidence            86543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.82  E-value=5.8e-07  Score=65.92  Aligned_cols=113  Identities=13%  Similarity=0.169  Sum_probs=81.9

Q ss_pred             cEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCce-eeec
Q psy4391          71 GISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKC-LKTL  149 (231)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~  149 (231)
                      -+..+++.|||+++++...++.|..++.....  ..+......+..++++++|+++++...++.+..++...... ...+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            36789999999999998889999988866432  22333456788999999999999988888888887654321 1111


Q ss_pred             --cCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCC
Q psy4391         150 --PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG  185 (231)
Q Consensus       150 --~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~  185 (231)
                        .........+.+.++++++++.+.++.+..+|...+
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence              123445778888898888887777777777766544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.72  E-value=3.5e-06  Score=60.34  Aligned_cols=95  Identities=16%  Similarity=0.179  Sum_probs=64.6

Q ss_pred             EECCC--CCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecC-C-----CcEEEEeCCCceeee
Q psy4391          34 KFSPN--GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSD-D-----KTLKIWELSSGKCLK  105 (231)
Q Consensus        34 ~~~~~--~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~-----g~i~~~d~~~~~~~~  105 (231)
                      ..+|+  |+.++... +|.|.+.++.+++.. .+..+.......+|+|||+.|+.... +     ..|.+++..+++..+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  99887654 567888888777654 55555667888999999999986532 2     247777887776544


Q ss_pred             eecCC------CcceEEEEECCCCCEEEEee
Q psy4391         106 TLKGH------SNYVFCCNFNPQSNLIVSGS  130 (231)
Q Consensus       106 ~~~~~------~~~v~~~~~~~~~~~l~~~~  130 (231)
                      .....      ........|+|+|+.++...
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            32211      12345678999999887653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.68  E-value=1.9e-05  Score=57.48  Aligned_cols=185  Identities=11%  Similarity=0.072  Sum_probs=121.7

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEec----ccccEEEEEECCCCCEEEEecC----CCcEEEEeC
Q psy4391          27 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG----HKLGISDVAWSSDSRLLVSGSD----DKTLKIWEL   98 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~----~g~i~~~d~   98 (231)
                      ...+.++++.++|.++++ +.+ .+..+|..+++.......    ....+.++.+.|+|++.++...    .+.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            346788999888887765 444 578888887765543321    1235788999999997766532    234456666


Q ss_pred             CCceeeeeecCCCcceEEEEECCCCCEEEE-eecCCcEEEEECCCCce--------eeeccCCCCCeEEEEEcCCCCeEE
Q psy4391          99 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-GSFDESVRIWDVRTGKC--------LKTLPAHSDPVSAVHFNRDGSLIV  169 (231)
Q Consensus        99 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~  169 (231)
                      ..++....... ......+.|+++++.++. .+..+.|..|++.....        ........+....++++.+|.+.+
T Consensus       136 ~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWv  214 (295)
T d2ghsa1         136 AKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN  214 (295)
T ss_dssp             ETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred             cCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEe
Confidence            66654433332 234567889999986654 45678899888753211        111223344578899999999887


Q ss_pred             EEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEEC-CCCCEEEEEeC
Q psy4391         170 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATL  216 (231)
Q Consensus       170 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~s~  216 (231)
                      +.-..+.|..||. .++.+..+.... ..+++++|- ++.+.|++.+.
T Consensus       215 a~~~~g~V~~~dp-~G~~~~~i~lP~-~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         215 ARWGEGAVDRYDT-DGNHIARYEVPG-KQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEETTTEEEEECT-TCCEEEEEECSC-SBEEEEEEESTTSCEEEEEEB
T ss_pred             eeeCCCceEEecC-CCcEeeEecCCC-CceEEEEEeCCCCCEEEEEEC
Confidence            7777889999996 566666665433 457888984 78777766543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.53  E-value=5.7e-05  Score=54.87  Aligned_cols=190  Identities=15%  Similarity=0.077  Sum_probs=122.0

Q ss_pred             EEEEECCCCC-EEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecC
Q psy4391          31 SSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG  109 (231)
Q Consensus        31 ~~~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~  109 (231)
                      -+..|++... +..+--..+.|..|+..++... .+. ....+..+++.+++++++++ .+ .+.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeee
Confidence            4677887544 4445446688999998776543 232 23457788898888776654 44 588899998765433321


Q ss_pred             ----CCcceEEEEECCCCCEEEEeecC----CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEE-EEecCCeEEEE
Q psy4391         110 ----HSNYVFCCNFNPQSNLIVSGSFD----ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYDGLCRIW  180 (231)
Q Consensus       110 ----~~~~v~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~v~  180 (231)
                          ....+..+.+.|+|++.++....    +.-.+|.+..++...... .-.....++|+++++.++ +-+..+.|..|
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEe
Confidence                12357788899999987765432    234566666665433332 233557889999998665 45567888888


Q ss_pred             eCCCCc--e---eeeee--cCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         181 DTASGQ--C---LKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       181 d~~~~~--~---~~~~~--~~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ++....  .   ...+.  .........++++.+|.+.++.-..+.|..||.
T Consensus       176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC
Confidence            764211  1   11111  122233567889999998777767889999995

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.18  E-value=0.00029  Score=53.05  Aligned_cols=143  Identities=16%  Similarity=0.163  Sum_probs=90.3

Q ss_pred             CCCEEEEec-CCCcEEEEeCCCceeeeeecCC-CcceEEEEEC--CCCCEEEEeecCC------------------cEEE
Q psy4391          80 DSRLLVSGS-DDKTLKIWELSSGKCLKTLKGH-SNYVFCCNFN--PQSNLIVSGSFDE------------------SVRI  137 (231)
Q Consensus        80 ~~~~l~~~~-~~g~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~d~------------------~i~v  137 (231)
                      ||+++++.. .+..|.+.|+++.+..+.+... ...+..++..  |...+++..+...                  .+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            788886665 5788999999998876655432 2334444554  4556777666532                  2567


Q ss_pred             EECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCC---------------eE-----------------------EE
Q psy4391         138 WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG---------------LC-----------------------RI  179 (231)
Q Consensus       138 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i-----------------------~v  179 (231)
                      +|..+.+....+... +....+.++|+|+++++.+.+.               .+                       .+
T Consensus       178 ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V  256 (459)
T d1fwxa2         178 VDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  256 (459)
T ss_dssp             EETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence            898887776665543 3455789999999998876431               12                       33


Q ss_pred             EeCCCC---ceeeeeecCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeC
Q psy4391         180 WDTASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDS  225 (231)
Q Consensus       180 ~d~~~~---~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~-d~~v~vwd~  225 (231)
                      .|.+..   ..+..+.....  -..+.++|||+++++++. +..+.|+|.
T Consensus       257 VD~~~~~~~~v~~yIPVpKs--PHGV~vSPDGKyi~VaGKLs~tVSViD~  304 (459)
T d1fwxa2         257 VDGRKEASSLFTRYIPIANN--PHGCNMAPDKKHLCVAGKLSPTVTVLDV  304 (459)
T ss_dssp             EECSGG--CSSEEEEEEESS--CCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred             ecccccCCcceeEEEecCCC--CCceEECCCCCEEEEeCCcCCcEEEEEe
Confidence            333321   11111211111  235789999999988764 889999996

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=0.00091  Score=47.42  Aligned_cols=197  Identities=9%  Similarity=0.003  Sum_probs=121.8

Q ss_pred             ccccceEEEEECCCCCEEEEEe-CCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEE-EecCCCcEEEEeCCCce
Q psy4391          25 GHTKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLV-SGSDDKTLKIWELSSGK  102 (231)
Q Consensus        25 ~h~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~d~~~~~  102 (231)
                      .+...+.+++|....+.|+-+. .++.|+..+.........+......+..+++..-++.|+ +-...+.|.+.++....
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            3445688899998888776554 456787777765544444444445678889887666665 44556799999988655


Q ss_pred             eeeeecCCCcceEEEEECCCCCEEEEeecC-C--cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCeEE
Q psy4391         103 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFD-E--SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCR  178 (231)
Q Consensus       103 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~  178 (231)
                      ....+......+..++++|...+++-.... +  .|.-.++............-.....+++++.++.|+.+ ...+.|.
T Consensus       113 ~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         113 RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence            433333334567889999987777654332 2  35445665433222222233456789999877777555 4568899


Q ss_pred             EEeCCCCceeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeC
Q psy4391         179 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDS  225 (231)
Q Consensus       179 v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~  225 (231)
                      ..|+..... ..+......| ..+++.  +.+|+... ..+.|...|.
T Consensus       193 ~~~~~g~~~-~~v~~~~~~P-~~lav~--~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         193 CLNPAQPGR-RKVLEGLQYP-FAVTSY--GKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             EEETTEEEE-EEEEECCCSE-EEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCe-EEEECCCCCc-EEEEEE--CCEEEEEECCCCEEEEEEC
Confidence            999875543 3333333333 456665  44555554 4567776664

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.93  E-value=7.2e-05  Score=53.22  Aligned_cols=96  Identities=15%  Similarity=0.266  Sum_probs=65.6

Q ss_pred             ECCC--CCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEec-C-----CeEEEEeCCCCceeee
Q psy4391         119 FNPQ--SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-D-----GLCRIWDTASGQCLKT  190 (231)
Q Consensus       119 ~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~v~d~~~~~~~~~  190 (231)
                      .+|+  |+.++..+ ++.|.+.|+..++. ..+..+.+.....+|+|||+.||.... +     ..|.+++..+++..+.
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            4677  88887664 45799999998775 455566677888999999999885532 2     2477788887765432


Q ss_pred             eecC-----CCCCeEEEEECCCCCEEEEEeC
Q psy4391         191 LIDD-----DNPPVSFVKFSPNGKYILAATL  216 (231)
Q Consensus       191 ~~~~-----~~~~i~~~~~s~~g~~l~~~s~  216 (231)
                      ....     ........+|+|+|+.|+....
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEc
Confidence            1111     1122356789999999887643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.78  E-value=0.0031  Score=47.40  Aligned_cols=191  Identities=13%  Similarity=0.171  Sum_probs=113.0

Q ss_pred             EEEECC---CCCEEEEEe-CCCcEEEeecCCCcEEEEEecc-cccEEEEEEC--CCCCEEEEecCCC-------------
Q psy4391          32 SVKFSP---NGEWLASSS-ADKLIKIWGAYDGKFEKTISGH-KLGISDVAWS--SDSRLLVSGSDDK-------------   91 (231)
Q Consensus        32 ~~~~~~---~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~~g-------------   91 (231)
                      .+.+..   ||+++++.. .++.|-+-|+.+.+..+.+... ...+..+...  |...+++..++..             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455544   889887654 6788999999888876655422 2345666554  4556776665532             


Q ss_pred             -----cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCC---------------------------------
Q psy4391          92 -----TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE---------------------------------  133 (231)
Q Consensus        92 -----~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------------------------  133 (231)
                           .+...|.++.+...++.... ....+.++++|+++++.+.+.                                 
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 25677888877665554322 344678999999988876431                                 


Q ss_pred             -----cEEEEECCCC---ceeeeccCCCCCeEEEEEcCCCCeEEEEe-cCCeEEEEeCCCCcee--------eee---ec
Q psy4391         134 -----SVRIWDVRTG---KCLKTLPAHSDPVSAVHFNRDGSLIVSSS-YDGLCRIWDTASGQCL--------KTL---ID  193 (231)
Q Consensus       134 -----~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~--------~~~---~~  193 (231)
                           .+.+.|.+..   ..+..+... .....+.++|||+++++++ .+.++.|+|++.-...        ..+   ..
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             cEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                 1233333211   011111111 1223478899999987665 5789999998632110        000   01


Q ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Q psy4391         194 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDS  225 (231)
Q Consensus       194 ~~~~~i~~~~~s~~g~~l~~~s~d~~v~vwd~  225 (231)
                      ..-.+ ...+|+..|.-..+--.|.+|.-|+.
T Consensus       327 lglgP-Lht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         327 LGLGP-LHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             CCSCE-EEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             cCcCc-cccccCCCceEEEEeeccceEEEEec
Confidence            11122 34689888854444447999999984

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.66  E-value=0.004  Score=43.99  Aligned_cols=177  Identities=8%  Similarity=-0.075  Sum_probs=106.0

Q ss_pred             cceEEEEECCCCCEEEEE-eCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC-C--cEEEEeCCCcee
Q psy4391          28 KAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD-K--TLKIWELSSGKC  103 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g--~i~~~d~~~~~~  103 (231)
                      ..+..+++..-++.|+.+ ...+.|.+.+.........+......+..++.+|...+++..... +  .|.--+++....
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            456788887766666544 445688888876544433344434567899999977776644322 2  344446654443


Q ss_pred             eeeecCCCcceEEEEECCCCCEEEEe-ecCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeC
Q psy4391         104 LKTLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  182 (231)
Q Consensus       104 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~  182 (231)
                      .............+++++.++.|+-. ...+.|...|+........+.. ......+++. ++..+.+-...+.|...|.
T Consensus       159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~-~~~P~~lav~-~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC-CCCcEEEEEE-CCEEEEEECCCCEEEEEEC
Confidence            33333334556788998887777555 4567898899875443222222 2234567775 3344444456688999999


Q ss_pred             CCCceeeeeecCCCCCeEEEEECC
Q psy4391         183 ASGQCLKTLIDDDNPPVSFVKFSP  206 (231)
Q Consensus       183 ~~~~~~~~~~~~~~~~i~~~~~s~  206 (231)
                      .+++....+..........+++.+
T Consensus       237 ~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         237 AISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             TTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             CCCccceEECCCCCCCcceEEEeC
Confidence            988877665544433333444433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.43  E-value=0.013  Score=46.13  Aligned_cols=82  Identities=23%  Similarity=0.245  Sum_probs=48.0

Q ss_pred             CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC-EE
Q psy4391         133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YI  211 (231)
Q Consensus       133 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l  211 (231)
                      |.|.-+|+++++.+.+.......... ...-.+.++++++.||.++.+|.++++.+=+........-.-+.+..||+ |+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g-~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGG-TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcc-eeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            35777888888776654322111111 11113567778999999999999999987655433222111134555775 66


Q ss_pred             EEEe
Q psy4391         212 LAAT  215 (231)
Q Consensus       212 ~~~s  215 (231)
                      ++.+
T Consensus       523 ~v~~  526 (571)
T d2ad6a1         523 GSMY  526 (571)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.36  E-value=0.0051  Score=48.43  Aligned_cols=82  Identities=15%  Similarity=0.275  Sum_probs=50.1

Q ss_pred             CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC-EE
Q psy4391         133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-YI  211 (231)
Q Consensus       133 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l  211 (231)
                      |.+.-+|+.+++.+.+..... +...-.+.-.+.+++.|+.||.++.+|..+++.+=+........-.-+.+..+|+ ||
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            457788999888776654321 1111112224567788999999999999999987665433221111134556775 66


Q ss_pred             EEEe
Q psy4391         212 LAAT  215 (231)
Q Consensus       212 ~~~s  215 (231)
                      ++.+
T Consensus       517 ~v~a  520 (560)
T d1kv9a2         517 AIMA  520 (560)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.011  Score=41.65  Aligned_cols=199  Identities=8%  Similarity=-0.035  Sum_probs=116.6

Q ss_pred             ccceEEEEECCCCCEEEEEe-CCCcEEEeecCCC----cEEEEEecccccEEEEEECCCCCEEEEe-cCCCcEEEEeCCC
Q psy4391          27 TKAVSSVKFSPNGEWLASSS-ADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDSRLLVSG-SDDKTLKIWELSS  100 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~~-~dg~i~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~g~i~~~d~~~  100 (231)
                      ...+.+++|.+..+.|+-.. .++.|...++...    .....+......+..+++.+.++.|+.+ ...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            45677899998888776554 3455555444321    1122233333446678888766666554 4567899999987


Q ss_pred             ceeeeeecCCCcceEEEEECCCCCEEEEee--cCCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCeE
Q psy4391         101 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGS--FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLC  177 (231)
Q Consensus       101 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i  177 (231)
                      ......+.........++++|...+++-..  ..+.|.-.++............-.....+++++.++.|+.+ ...+.|
T Consensus       109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I  188 (266)
T d1ijqa1         109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (266)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEE
Confidence            655444555556678899998766665544  33457667776443323223333457889999877766655 556889


Q ss_pred             EEEeCCCCceeeeeecCC-CCCeEEEEECCCCCEEEEEe-CCCeEEEEeCCC
Q psy4391         178 RIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAAT-LDNTLKLWDSYP  227 (231)
Q Consensus       178 ~v~d~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~~  227 (231)
                      ...++............. ......+++.  +.+|+... .++.|...+...
T Consensus       189 ~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         189 SSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             EEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             EEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCC
Confidence            988986544322222211 1223446655  34455544 566777766433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.017  Score=40.68  Aligned_cols=164  Identities=9%  Similarity=-0.052  Sum_probs=100.4

Q ss_pred             cceEEEEECCCCCEEEEE-eCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEec--CCCcEEEEeCCCceee
Q psy4391          28 KAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGS--DDKTLKIWELSSGKCL  104 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~g~i~~~d~~~~~~~  104 (231)
                      ..+..+++.+.++.|+.+ ...+.|.+.+.........+.........++.+|...++....  ..+.|.-.++......
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            345678887766666554 4456788888865554444554455678899998766665443  3346766777654444


Q ss_pred             eeecCCCcceEEEEECCCCCEEEEe-ecCCcEEEEECCCCceeeec--cCCCCCeEEEEEcCCCCeEEEEecCCeEEEEe
Q psy4391         105 KTLKGHSNYVFCCNFNPQSNLIVSG-SFDESVRIWDVRTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD  181 (231)
Q Consensus       105 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d  181 (231)
                      ..+.........+++++.++.|+-+ ...+.|...++.........  .........+++. ++..+.+-..++.|...+
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEE
Confidence            4443334556788999877766655 55678888898654332222  2222234566665 233444445667888888


Q ss_pred             CCCCceeeeee
Q psy4391         182 TASGQCLKTLI  192 (231)
Q Consensus       182 ~~~~~~~~~~~  192 (231)
                      ..+++....+.
T Consensus       236 ~~~g~~~~~~~  246 (266)
T d1ijqa1         236 RLTGSDVNLLA  246 (266)
T ss_dssp             TTTCCCCEEEE
T ss_pred             CCCCcceEEEE
Confidence            77776555444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.05  E-value=0.018  Score=45.41  Aligned_cols=78  Identities=19%  Similarity=0.340  Sum_probs=48.2

Q ss_pred             cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCC---CCCeEEEEECCCCC-
Q psy4391         134 SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD---NPPVSFVKFSPNGK-  209 (231)
Q Consensus       134 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---~~~i~~~~~s~~g~-  209 (231)
                      .+.-||+.+++.+....... +...-..+-.+.++++|+.||.++.+|.++++.+-++....   ..+   +.+..+|+ 
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQ  533 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQ  533 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEE
T ss_pred             cEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEE
Confidence            46677887777766654321 11111122256788889999999999999999886654432   233   34455775 


Q ss_pred             EEEEEe
Q psy4391         210 YILAAT  215 (231)
Q Consensus       210 ~l~~~s  215 (231)
                      |+++.+
T Consensus       534 Yv~v~~  539 (573)
T d1kb0a2         534 YVSVAV  539 (573)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            555444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.05  E-value=0.0095  Score=47.09  Aligned_cols=83  Identities=22%  Similarity=0.316  Sum_probs=53.7

Q ss_pred             CCcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeEEEEECCCCC-E
Q psy4391         132 DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK-Y  210 (231)
Q Consensus       132 d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~  210 (231)
                      .|.+.-+|+.+++...+..... ++..-..+-.+.++++|+.||.++.+|.++++.+=++.......-.-+.+..+|+ |
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            3678889999998877765332 2211112235667788999999999999999988666543322112245667884 6


Q ss_pred             EEEEe
Q psy4391         211 ILAAT  215 (231)
Q Consensus       211 l~~~s  215 (231)
                      +++.+
T Consensus       544 v~i~a  548 (582)
T d1flga_         544 LGVTV  548 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            65543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.87  E-value=0.024  Score=41.76  Aligned_cols=110  Identities=11%  Similarity=0.144  Sum_probs=69.0

Q ss_pred             EEECCCCCEEEEeecCC-----------cEEEEECCCCceeee--c-cCCCCCeEEEEEcCCCCeEEEEecC-CeEEEEe
Q psy4391         117 CNFNPQSNLIVSGSFDE-----------SVRIWDVRTGKCLKT--L-PAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWD  181 (231)
Q Consensus       117 ~~~~~~~~~l~~~~~d~-----------~i~v~d~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~v~d  181 (231)
                      .....+|++++.|+.+.           .+.+||..+++....  . ..+.......++.+++++++.|+.+ ..+.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            34455777777776421           267899987754221  1 1222233456788999999988766 5899999


Q ss_pred             CCCCceeeeeecCCCCCeEEEEECCCCCEEEEEeCC------CeEEEEeCC
Q psy4391         182 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD------NTLKLWDSY  226 (231)
Q Consensus       182 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s~d------~~v~vwd~~  226 (231)
                      ..+......-...........+..+||+.++.++.+      +.+.+||..
T Consensus       105 ~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3         105 SSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  155 (387)
T ss_dssp             GGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             CccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCC
Confidence            988765332111112223456678899999888753      368888863

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.77  E-value=0.056  Score=39.65  Aligned_cols=158  Identities=13%  Similarity=0.182  Sum_probs=93.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCC-----------cEEEeecCCCcEEEE--E-ecccccEEEEEECCCCCEEEEecCC-CcE
Q psy4391          29 AVSSVKFSPNGEWLASSSADK-----------LIKIWGAYDGKFEKT--I-SGHKLGISDVAWSSDSRLLVSGSDD-KTL   93 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg-----------~i~i~~~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~~~~~~-g~i   93 (231)
                      .+.......+|+.++.|+.+.           .+.+||..++.....  . ..+.......++.++++.++.++.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            334445567888888777431           367899887654321  1 1222223456788999988888655 589


Q ss_pred             EEEeCCCceeeeee--cCCCcceEEEEECCCCCEEEEeecC------CcEEEEECCCCceeeecc--------C-CC---
Q psy4391          94 KIWELSSGKCLKTL--KGHSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVRTGKCLKTLP--------A-HS---  153 (231)
Q Consensus        94 ~~~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~--------~-~~---  153 (231)
                      .+||..+......-  ..... -......+++++++.|+..      ..+.+||..+.+-...-.        . +.   
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~-~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  179 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  179 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             eEecCccCccccccccccccc-ccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence            99999876543221  11111 1245667789999988753      358899988765321100        0 00   


Q ss_pred             --CCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCce
Q psy4391         154 --DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC  187 (231)
Q Consensus       154 --~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~  187 (231)
                        ..-..+...++++.+..+...+.+.++|..+...
T Consensus       180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~  215 (387)
T d1k3ia3         180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV  215 (387)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred             eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence              0001122345677777777777778888776653

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.68  E-value=0.076  Score=39.94  Aligned_cols=101  Identities=17%  Similarity=0.210  Sum_probs=62.3

Q ss_pred             cceEEEEECCCCCEEEEE-eCC----CcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCC------------
Q psy4391          28 KAVSSVKFSPNGEWLASS-SAD----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDD------------   90 (231)
Q Consensus        28 ~~i~~~~~~~~~~~l~~~-~~d----g~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------------   90 (231)
                      -.+....+||++++++.+ +.+    ..++++|+.+++....... ......++|.+|++.|+....+            
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            345677889999988753 223    3689999999876543211 1122457899999987654322            


Q ss_pred             ----CcEEEEeCCCce--eeeeecCC--CcceEEEEECCCCCEEEEe
Q psy4391          91 ----KTLKIWELSSGK--CLKTLKGH--SNYVFCCNFNPQSNLIVSG  129 (231)
Q Consensus        91 ----g~i~~~d~~~~~--~~~~~~~~--~~~v~~~~~~~~~~~l~~~  129 (231)
                          ..+..+.+.+..  ....+...  ...+..+..++++++++..
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence                246677776532  12233322  2345567788999887654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.52  E-value=0.073  Score=37.86  Aligned_cols=151  Identities=12%  Similarity=0.221  Sum_probs=95.8

Q ss_pred             ccceEEEEECCCCCEEEEE---eC----CCcEEEeecCCCcEEEEEecccccEEEEEECCC---CCEEEEec---CCCcE
Q psy4391          27 TKAVSSVKFSPNGEWLASS---SA----DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SRLLVSGS---DDKTL   93 (231)
Q Consensus        27 ~~~i~~~~~~~~~~~l~~~---~~----dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~---~~g~i   93 (231)
                      ...|..-.-+++++|++..   ..    .|.+++|..+ .+..+.+.+|......+...-+   .+.++.+.   ..+.+
T Consensus       147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e-r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kL  225 (327)
T d1utca2         147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL  225 (327)
T ss_dssp             TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred             CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec-cCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEE
Confidence            3468888889999987642   22    3678889875 4455677777654444433211   12333332   23578


Q ss_pred             EEEeCCCce---e---ee--eec----CCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCeEEEEE
Q psy4391          94 KIWELSSGK---C---LK--TLK----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF  161 (231)
Q Consensus        94 ~~~d~~~~~---~---~~--~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v~~~~~  161 (231)
                      ++-++....   .   .+  .+.    ...+...++..++...+++.-+.-|.+++||++++.++..-+.....|...+-
T Consensus       226 hIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~  305 (327)
T d1utca2         226 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP  305 (327)
T ss_dssp             EEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             EEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEecc
Confidence            888875421   1   11  111    22456678889998899999999999999999999988776665666665555


Q ss_pred             cCCCCeEEEEecCCeEE
Q psy4391         162 NRDGSLIVSSSYDGLCR  178 (231)
Q Consensus       162 ~~~~~~l~~~~~dg~i~  178 (231)
                      +.+..=+++...+|.|.
T Consensus       306 ~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         306 HEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             ETTTTEEEEEETTSEEE
T ss_pred             CCCCceEEEECCCCeEE
Confidence            54444455555666554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.45  E-value=0.093  Score=38.21  Aligned_cols=183  Identities=13%  Similarity=0.156  Sum_probs=97.0

Q ss_pred             EEEEECCCCCEEEEEeC------------CCcEEEeecCCCcE-EEE--Eecc-----cccEEEEEE--CCCCCE-EEEe
Q psy4391          31 SSVKFSPNGEWLASSSA------------DKLIKIWGAYDGKF-EKT--ISGH-----KLGISDVAW--SSDSRL-LVSG   87 (231)
Q Consensus        31 ~~~~~~~~~~~l~~~~~------------dg~i~i~~~~~~~~-~~~--~~~~-----~~~v~~~~~--~~~~~~-l~~~   87 (231)
                      -.+...|+|..+++++.            .|.+.++|..+... ...  +.+.     ......+..  .++++. |++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            46788899987766532            48888998765432 112  2211     123344443  445553 4343


Q ss_pred             ---cCCCcEEEEeCCCce--e--eeeecCC-CcceEEEEECCCCCEEEEeec---------------CCcEEEEECCCCc
Q psy4391          88 ---SDDKTLKIWELSSGK--C--LKTLKGH-SNYVFCCNFNPQSNLIVSGSF---------------DESVRIWDVRTGK  144 (231)
Q Consensus        88 ---~~~g~i~~~d~~~~~--~--~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---------------d~~i~v~d~~~~~  144 (231)
                         ....+|.++++....  .  +..+... .....++.+..++.+++|-..               -+.-.+|....+.
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence               234567777765322  1  1222221 234567777788888877211               0122333333333


Q ss_pred             eeeeccCCCCCeEEEEEcCCCCeEEEE-ecCCeEEEEeCCCCceeeee-ecCCCCCeEEEEECC-CCCEEEEE
Q psy4391         145 CLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSP-NGKYILAA  214 (231)
Q Consensus       145 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~-~~~~~~~i~~~~~s~-~g~~l~~~  214 (231)
                      . ......-.....++++||+++|+++ +..+.|++|++.....+... ...-......+.+++ +|.+.+++
T Consensus       198 ~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         198 V-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             E-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             e-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            2 2222223456789999999877655 45688999988754332221 111223345677876 45555444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.31  E-value=0.042  Score=43.20  Aligned_cols=76  Identities=18%  Similarity=0.254  Sum_probs=45.7

Q ss_pred             cEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCe-EEEEEcCCCCeE
Q psy4391          92 TLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPV-SAVHFNRDGSLI  168 (231)
Q Consensus        92 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l  168 (231)
                      .+.-||+.+++.+-..+.... ...-...-.+.++++|+.|+.++.+|.++|+.+.++....+.. .-+.|..+|+..
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p-~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSP-WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cEEEeCCCCCceEeeecCCCC-CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            455667777665544432211 0000122257788889999999999999999998876433211 124455577643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.23  E-value=0.04  Score=43.55  Aligned_cols=78  Identities=17%  Similarity=0.267  Sum_probs=47.6

Q ss_pred             CcEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCC---CCCeEEEEECCCCC
Q psy4391         133 ESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD---NPPVSFVKFSPNGK  209 (231)
Q Consensus       133 ~~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---~~~i~~~~~s~~g~  209 (231)
                      |.|.-||+.+++.+...... .+...-.++-.+.+++.|+.||.++.+|.++++.+=++....   ..++   .+..+|+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~---tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPM---TYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE---EEEETTE
T ss_pred             ceEEEEeCCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCe---EEEECCE
Confidence            45777888888776554321 111111112246677789999999999999999876654332   3343   3445775


Q ss_pred             -EEEEE
Q psy4391         210 -YILAA  214 (231)
Q Consensus       210 -~l~~~  214 (231)
                       |+++.
T Consensus       529 QYvav~  534 (596)
T d1w6sa_         529 QYVAIY  534 (596)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence             56543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.04  E-value=0.041  Score=43.12  Aligned_cols=79  Identities=16%  Similarity=0.255  Sum_probs=48.0

Q ss_pred             CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCCe-EEEEEcCCCC-eE
Q psy4391          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPV-SAVHFNRDGS-LI  168 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~v-~~~~~~~~~~-~l  168 (231)
                      |.+.-+|+.+++.+-....... ...-.+.-.+.+++.|+.||.++.+|.++|+.+.++....... .-+.+..+|+ ++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~-~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH-WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCC-CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            4566778887776554432111 1010122246788889999999999999999998876533211 1244555776 44


Q ss_pred             EE
Q psy4391         169 VS  170 (231)
Q Consensus       169 ~~  170 (231)
                      ++
T Consensus       517 ~v  518 (560)
T d1kv9a2         517 AI  518 (560)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.69  E-value=0.15  Score=38.30  Aligned_cols=101  Identities=17%  Similarity=0.229  Sum_probs=62.7

Q ss_pred             eEEEEECCCCCEEEEe-ecCC----cEEEEECCCCceeeeccCCCCCeEEEEEcCCCCeEEEEecC--------------
Q psy4391         114 VFCCNFNPQSNLIVSG-SFDE----SVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD--------------  174 (231)
Q Consensus       114 v~~~~~~~~~~~l~~~-~~d~----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------  174 (231)
                      +...+++|++++++.+ +.+|    .++++|+.+++.+...... .....++|.+|++.|+-...+              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            3456789999998854 2333    5899999999865432111 112457899999987654322              


Q ss_pred             --CeEEEEeCCCCceeeeeecC--CC-CCeEEEEECCCCCEEEEEe
Q psy4391         175 --GLCRIWDTASGQCLKTLIDD--DN-PPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       175 --g~i~v~d~~~~~~~~~~~~~--~~-~~i~~~~~s~~g~~l~~~s  215 (231)
                        ..+..+.+.+......+...  .. .-+..+..++++++++...
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence              25777777765433222222  22 2345677899999987544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.46  E-value=0.35  Score=36.54  Aligned_cols=54  Identities=13%  Similarity=0.219  Sum_probs=37.7

Q ss_pred             cccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeee--eec------CCCcceEEEEECCC
Q psy4391          69 KLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLK--TLK------GHSNYVFCCNFNPQ  122 (231)
Q Consensus        69 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~--~~~------~~~~~v~~~~~~~~  122 (231)
                      -...++|+|.|+++.+++--..|.|++++..+++...  .+.      ........++++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4567899999999987776567999999887765322  111      11244678999985

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.28  E-value=0.34  Score=35.30  Aligned_cols=186  Identities=10%  Similarity=0.229  Sum_probs=101.2

Q ss_pred             CCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEE------CCCCCEEEEecC-C-C--cEEEEeCCC-ceeee
Q psy4391          37 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW------SSDSRLLVSGSD-D-K--TLKIWELSS-GKCLK  105 (231)
Q Consensus        37 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~-~-g--~i~~~d~~~-~~~~~  105 (231)
                      |+..+++...+.+-|.+||+. ++....+..  +++..+..      .....-+++++. + +  .|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345677777788789999984 666666543  23333322      212223444442 2 2  577776642 11222


Q ss_pred             eecCC-------CcceEEEEE--CCC-CC-EEEEeecCCcEEEEECC---CCc----eeeeccCCCCCeEEEEEcCCCCe
Q psy4391         106 TLKGH-------SNYVFCCNF--NPQ-SN-LIVSGSFDESVRIWDVR---TGK----CLKTLPAHSDPVSAVHFNRDGSL  167 (231)
Q Consensus       106 ~~~~~-------~~~v~~~~~--~~~-~~-~l~~~~~d~~i~v~d~~---~~~----~~~~~~~~~~~v~~~~~~~~~~~  167 (231)
                      .+...       ...+..+++  ++. +. +++....+|.+..|.+.   .+.    .++.+.. ...+..+.+++....
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCc
Confidence            22211       112334444  665 44 45556678888887663   222    2334433 346788899998889


Q ss_pred             EEEEecCCeEEEEeCCC--Cceeeeee---c-CCCCCeEEEEE--CCCCC-EEEEEeC-CCeEEEEeCC
Q psy4391         168 IVSSSYDGLCRIWDTAS--GQCLKTLI---D-DDNPPVSFVKF--SPNGK-YILAATL-DNTLKLWDSY  226 (231)
Q Consensus       168 l~~~~~dg~i~v~d~~~--~~~~~~~~---~-~~~~~i~~~~~--s~~g~-~l~~~s~-d~~v~vwd~~  226 (231)
                      |+.+-.+.-+..+++..  ......+.   . .....+..++.  .++++ ||++.+. +++..|||..
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~  262 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ  262 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence            99998887777776542  11111111   1 11223444442  44444 6655554 7899999964

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.23  E-value=0.34  Score=35.09  Aligned_cols=152  Identities=11%  Similarity=0.195  Sum_probs=80.8

Q ss_pred             cEEEEEECCCCCEEEEecC------------CCcEEEEeCCCceee-ee--ecCCC-----cceEEEE--ECCCCCE-EE
Q psy4391          71 GISDVAWSSDSRLLVSGSD------------DKTLKIWELSSGKCL-KT--LKGHS-----NYVFCCN--FNPQSNL-IV  127 (231)
Q Consensus        71 ~v~~~~~~~~~~~l~~~~~------------~g~i~~~d~~~~~~~-~~--~~~~~-----~~v~~~~--~~~~~~~-l~  127 (231)
                      +..+++..|+|..+++++.            .|.+.++|+++.+.. ..  +.+..     -....+.  -.+++.. |+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3445666777766655432            488999998764321 11  11110     1122232  2455553 44


Q ss_pred             Eee---cCCcEEEEECCCCce-ee---ecc-CCCCCeEEEEEcCCCCeEEEEec-----------------CCeEEEEeC
Q psy4391         128 SGS---FDESVRIWDVRTGKC-LK---TLP-AHSDPVSAVHFNRDGSLIVSSSY-----------------DGLCRIWDT  182 (231)
Q Consensus       128 ~~~---~d~~i~v~d~~~~~~-~~---~~~-~~~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~v~d~  182 (231)
                      ...   ...+|.+|++..... +.   .+. ..-.....+.+..++.++++-..                 .+.+.-||.
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            432   345688888754321 11   111 11234678888888887777311                 123444443


Q ss_pred             CCCceeeeeecCCCCCeEEEEECCCCCEEEEEe-CCCeEEEEeCC
Q psy4391         183 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT-LDNTLKLWDSY  226 (231)
Q Consensus       183 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~s-~d~~v~vwd~~  226 (231)
                        ++. ..... .-.--+.++++||+++|+++. ..++|++|+..
T Consensus       196 --~~~-~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~  236 (340)
T d1v04a_         196 --NDV-RVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKH  236 (340)
T ss_dssp             --SCE-EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             --Cce-EEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeC
Confidence              332 22221 122347799999998876655 47799998853

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.99  E-value=0.44  Score=35.07  Aligned_cols=136  Identities=12%  Similarity=0.048  Sum_probs=77.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeec
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLK  108 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~  108 (231)
                      .|..++|+-+  .++.. .++.+..++...-...........++..+.+.|.  .++....++.+.++++.+++......
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC
Confidence            5888999744  45554 3566777776654444444334456788888875  45666678899999998765332211


Q ss_pred             C-----CCcceEEEEECCCCCEEEEeecCCcEEE-EECCCCceeeeccCCCCCeEEEEEcCCCCeEEE
Q psy4391         109 G-----HSNYVFCCNFNPQSNLIVSGSFDESVRI-WDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS  170 (231)
Q Consensus       109 ~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~v-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  170 (231)
                      +     -...+.+++|++.|..++++..++ ..+ -++.....+..-......+.++.|..+..++++
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEE
Confidence            1     124467788888888887764332 111 122211111111122345778888765555543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.89  E-value=0.39  Score=34.06  Aligned_cols=185  Identities=12%  Similarity=0.165  Sum_probs=109.2

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEeecCCCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEeCCCc-eeeeeecCC
Q psy4391          32 SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWELSSG-KCLKTLKGH  110 (231)
Q Consensus        32 ~~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~  110 (231)
                      +.-.+|..+.||.-+ ...++++|+++....+...-. .+|.-=.|-.+. .|+-.+ +..|+=|+++.. ++.+.+..|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            456678888887654 568999999988777666533 345555676554 444433 347888998542 355555443


Q ss_pred             C----cceEEEEECCCCCEEEEee---c----CCcEEEEECCCCce----------------------------------
Q psy4391         111 S----NYVFCCNFNPQSNLIVSGS---F----DESVRIWDVRTGKC----------------------------------  145 (231)
Q Consensus       111 ~----~~v~~~~~~~~~~~l~~~~---~----d~~i~v~d~~~~~~----------------------------------  145 (231)
                      .    ..+.....+++.+.++..+   .    .|.+.+|..+.+..                                  
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~  222 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  222 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence            2    3455666677777655432   2    23456666543210                                  


Q ss_pred             --e--eecc---------------------CCCCCeEEEEEcCCCCeEEEEecCCeEEEEeCCCCceeeeeecCCCCCeE
Q psy4391         146 --L--KTLP---------------------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS  200 (231)
Q Consensus       146 --~--~~~~---------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~~i~  200 (231)
                        +  ..+.                     ...+-..+|..++.-..++..+.-|.+++||++++.++..-.-... +|-
T Consensus       223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~-~iF  301 (327)
T d1utca2         223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE-TIF  301 (327)
T ss_dssp             EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEE
T ss_pred             cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCC-ceE
Confidence              0  0000                     0012234566777667788889999999999999998776543333 232


Q ss_pred             EEEECCCCCEEEEEeCCCeEE
Q psy4391         201 FVKFSPNGKYILAATLDNTLK  221 (231)
Q Consensus       201 ~~~~s~~g~~l~~~s~d~~v~  221 (231)
                      ..+-+.+..-+++...+|+|.
T Consensus       302 ~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         302 VTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEETTTTEEEEEETTSEEE
T ss_pred             EeccCCCCceEEEECCCCeEE
Confidence            233344444555555677654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.63  E-value=0.08  Score=41.61  Aligned_cols=76  Identities=22%  Similarity=0.355  Sum_probs=48.3

Q ss_pred             CcEEEEeCCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeeccCCCCC-eEEEEEcCCCCe
Q psy4391          91 KTLKIWELSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP-VSAVHFNRDGSL  167 (231)
Q Consensus        91 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~  167 (231)
                      |.+.-+|+.+++..-....... +..-..+..+.+++.|+.||.++.+|.++|+.+.++...... -..+.+..+|+.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p-~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLP-LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC-CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCC-CccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            4566777777776555442211 111112235678888999999999999999999887653321 122566678864

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.46  Score=32.83  Aligned_cols=101  Identities=12%  Similarity=0.150  Sum_probs=47.8

Q ss_pred             CCCEEEEeecC-----CcEEEEECCCCceeeeccCCCC-CeEEEEEcCCCCeEEEEecC-----CeEEEEeCCCCceeee
Q psy4391         122 QSNLIVSGSFD-----ESVRIWDVRTGKCLKTLPAHSD-PVSAVHFNRDGSLIVSSSYD-----GLCRIWDTASGQCLKT  190 (231)
Q Consensus       122 ~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~  190 (231)
                      ++.+++.|+.+     ..+..||..+.+....-..... ...+... .++..++.++.+     .....+|..+.+....
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~  226 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV  226 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecc
Confidence            34555555543     3467888876553222111111 1112222 235555565544     2566778776654322


Q ss_pred             eecCCCCCe-EEEEECCCCCEEEEEeCCC-----eEEEEeC
Q psy4391         191 LIDDDNPPV-SFVKFSPNGKYILAATLDN-----TLKLWDS  225 (231)
Q Consensus       191 ~~~~~~~~i-~~~~~s~~g~~l~~~s~d~-----~v~vwd~  225 (231)
                       ........ ..++ ..+++.++.|+.++     .|.+||.
T Consensus       227 -~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~  265 (288)
T d1zgka1         227 -APMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDP  265 (288)
T ss_dssp             -CCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEET
T ss_pred             -cCccCcccceEEE-EECCEEEEEecCCCCeecceEEEEEC
Confidence             11111111 1222 23678888876543     4777875

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.13  E-value=0.69  Score=33.60  Aligned_cols=144  Identities=14%  Similarity=0.227  Sum_probs=82.3

Q ss_pred             CCCCEEEEecCCCcEEEEeCCCceeeeeecCCCcceEEE------EECCCCCEEEEeec-C-C--cEEEEECCC-Cceee
Q psy4391          79 SDSRLLVSGSDDKTLKIWELSSGKCLKTLKGHSNYVFCC------NFNPQSNLIVSGSF-D-E--SVRIWDVRT-GKCLK  147 (231)
Q Consensus        79 ~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~------~~~~~~~~l~~~~~-d-~--~i~v~d~~~-~~~~~  147 (231)
                      |+...|+...+.+-|++||++ ++.+..+..  +.+..+      .+......++.++. + +  .|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            455677777777779999996 565555542  222222      22333333555542 2 2  477776642 22223


Q ss_pred             eccCC-------CCCeEEEEE--cCC-CC-eEEEEecCCeEEEEeC---CCCc----eeeeeecCCCCCeEEEEECCCCC
Q psy4391         148 TLPAH-------SDPVSAVHF--NRD-GS-LIVSSSYDGLCRIWDT---ASGQ----CLKTLIDDDNPPVSFVKFSPNGK  209 (231)
Q Consensus       148 ~~~~~-------~~~v~~~~~--~~~-~~-~l~~~~~dg~i~v~d~---~~~~----~~~~~~~~~~~~i~~~~~s~~g~  209 (231)
                      .+...       ...++.+|+  ++. +. ++++...+|.+..|.+   ..+.    .++.+  .....+..+.+++...
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f--~~~~q~EGCVvDde~~  192 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF--KMNSQTEGMAADDEYG  192 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE--ECSSCEEEEEEETTTT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc--CCCCccceEEEeCCCC
Confidence            22211       112445555  664 44 4556667888887755   2332    22223  2345678899999999


Q ss_pred             EEEEEeCCCeEEEEeCCC
Q psy4391         210 YILAATLDNTLKLWDSYP  227 (231)
Q Consensus       210 ~l~~~s~d~~v~vwd~~~  227 (231)
                      .|+.+-.+.-|..+++.|
T Consensus       193 ~LyisEE~~Giw~~~a~~  210 (353)
T d1h6la_         193 SLYIAEEDEAIWKFSAEP  210 (353)
T ss_dssp             EEEEEETTTEEEEEESST
T ss_pred             cEEEecCccceEEEEecc
Confidence            999998887776666544

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.12  E-value=0.49  Score=31.84  Aligned_cols=149  Identities=10%  Similarity=0.149  Sum_probs=80.0

Q ss_pred             ccEEEEEECCCCCEEEEecCCCcEEEEeCCCceeeeeecC-CCcceEEEEECCCCCEEEEee--cCCc--EEEEECCCCc
Q psy4391          70 LGISDVAWSSDSRLLVSGSDDKTLKIWELSSGKCLKTLKG-HSNYVFCCNFNPQSNLIVSGS--FDES--VRIWDVRTGK  144 (231)
Q Consensus        70 ~~v~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~d~~--i~v~d~~~~~  144 (231)
                      .++.+++.. +.+...+|+......+|-++.++......- .-+.|+++.    +++++-.+  ..+.  ..+-|+.+|.
T Consensus       104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~----~d~I~G~g~~~g~~~sfF~adl~SG~  178 (313)
T d2hu7a1         104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR----GDLIAGLGFFGGGRVSLFTSNLSSGG  178 (313)
T ss_dssp             BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE----TTEEEEEEEEETTEEEEEEEETTTEE
T ss_pred             EEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEecc----CCeEEEEeeecCCcceEEEEecccCC
Confidence            445555553 334556777777788888887764332221 123344332    33332211  1111  2223444333


Q ss_pred             eeeeccCCCCCeEEEEEcCCCCeEEEEecC-C--eEEEEeCCCCceeeeeec------CCCCCeEEEEECCCCCEEEEEe
Q psy4391         145 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-G--LCRIWDTASGQCLKTLID------DDNPPVSFVKFSPNGKYILAAT  215 (231)
Q Consensus       145 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~------~~~~~i~~~~~s~~g~~l~~~s  215 (231)
                       ++.+....+.++...+.+..+. +++... |  ....+|++.++-...-..      .....|..+-+.|++++++.+-
T Consensus       179 -lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiak  256 (313)
T d2hu7a1         179 -LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR  256 (313)
T ss_dssp             -EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred             -EEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEe
Confidence             3444455556666667776655 443321 2  222558887764332211      1223456677999999989999


Q ss_pred             CCCeEEEEeC
Q psy4391         216 LDNTLKLWDS  225 (231)
Q Consensus       216 ~d~~v~vwd~  225 (231)
                      .||+=++|+.
T Consensus       257 rdG~s~lF~n  266 (313)
T d2hu7a1         257 REGRSAVFID  266 (313)
T ss_dssp             ETTEEEEEET
T ss_pred             cCCchheeec
Confidence            9999988874

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.90  E-value=0.81  Score=33.61  Aligned_cols=136  Identities=13%  Similarity=0.065  Sum_probs=79.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEeecC-----------CCcEEEEEecccccEEEEEECCCCCEEEEecCCCcEEEEe
Q psy4391          29 AVSSVKFSPNGEWLASSSADKLIKIWGAY-----------DGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKIWE   97 (231)
Q Consensus        29 ~i~~~~~~~~~~~l~~~~~dg~i~i~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~d   97 (231)
                      ...-++.++...++++|+.++ +.|....           .........  -..+..++|+.+  .++.. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            456788888888888888775 4454421           111111111  135788888754  34444 445677777


Q ss_pred             CCCceeeeeecCCCcceEEEEECCCCCEEEEeecCCcEEEEECCCCceeeecc-----CCCCCeEEEEEcCCCCeEEEEe
Q psy4391          98 LSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLP-----AHSDPVSAVHFNRDGSLIVSSS  172 (231)
Q Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~  172 (231)
                      ...-............+..+.++|.  .++....++.+.++++..++......     .-.+.+.+++|++.|..++++.
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            6653222222223445677777775  56666778889999998775422211     0124577788888777777763

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.21  E-value=1.4  Score=34.21  Aligned_cols=149  Identities=13%  Similarity=0.153  Sum_probs=85.8

Q ss_pred             CEEEEEeCCCcEEEeecCCCcEEEEEeccc----ccEEEEEECCCCCEEEEec------CCCcEEEEeCCCceeeeeecC
Q psy4391          40 EWLASSSADKLIKIWGAYDGKFEKTISGHK----LGISDVAWSSDSRLLVSGS------DDKTLKIWELSSGKCLKTLKG  109 (231)
Q Consensus        40 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~------~~g~i~~~d~~~~~~~~~~~~  109 (231)
                      ..++.++.||.+.-.|.++++.........    ..++..-.-.++ .++.+.      ..|.|+-+|+.+++.+-....
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            356667788888888988888765543211    111110011123 344443      267899999999987654321


Q ss_pred             CC-------------------------------------cce-EEEEECCCCCEEEEeec----------------CCcE
Q psy4391         110 HS-------------------------------------NYV-FCCNFNPQSNLIVSGSF----------------DESV  135 (231)
Q Consensus       110 ~~-------------------------------------~~v-~~~~~~~~~~~l~~~~~----------------d~~i  135 (231)
                      ..                                     ..+ ....+++...+++.+..                ...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv  274 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence            10                                     001 12345566666665544                2346


Q ss_pred             EEEECCCCceeeeccCCCC---------CeEEEEEcCCCC---eEEEEecCCeEEEEeCCCCceee
Q psy4391         136 RIWDVRTGKCLKTLPAHSD---------PVSAVHFNRDGS---LIVSSSYDGLCRIWDTASGQCLK  189 (231)
Q Consensus       136 ~v~d~~~~~~~~~~~~~~~---------~v~~~~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~  189 (231)
                      ...|.++|+.+..++....         +.....+..+++   .++.++.+|.+.++|..+++.+.
T Consensus       275 vAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             eeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEee
Confidence            7789999988776653221         111122223443   45678889999999999988653

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.20  E-value=1.4  Score=34.34  Aligned_cols=150  Identities=15%  Similarity=0.204  Sum_probs=88.5

Q ss_pred             CEEEEEeCCCcEEEeecCCCcEEEEEecccccE-EEEEECC--CCCEEEEecC------CCcEEEEeCCCceeeeeecCC
Q psy4391          40 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGI-SDVAWSS--DSRLLVSGSD------DKTLKIWELSSGKCLKTLKGH  110 (231)
Q Consensus        40 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~~------~g~i~~~d~~~~~~~~~~~~~  110 (231)
                      .+++.++.|+.|.-.|.++++....+....... ..+.-.|  .+..++.+..      .|.|+-+|.++++.+-.+...
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~  201 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence            367788889999888999998877664211100 0011111  1234555433      488999999999876554211


Q ss_pred             --------------------------------------CcceEEEEECCCCCEEEEeecC----------------CcEE
Q psy4391         111 --------------------------------------SNYVFCCNFNPQSNLIVSGSFD----------------ESVR  136 (231)
Q Consensus       111 --------------------------------------~~~v~~~~~~~~~~~l~~~~~d----------------~~i~  136 (231)
                                                            ...-..+.+++...+++.+..+                ..+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv  281 (596)
T d1w6sa_         202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (596)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence                                                  0001123455666666655432                3367


Q ss_pred             EEECCCCceeeeccCCCC---------CeEEEE-EcCCCC---eEEEEecCCeEEEEeCCCCceee
Q psy4391         137 IWDVRTGKCLKTLPAHSD---------PVSAVH-FNRDGS---LIVSSSYDGLCRIWDTASGQCLK  189 (231)
Q Consensus       137 v~d~~~~~~~~~~~~~~~---------~v~~~~-~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~  189 (231)
                      ..|+++|+....++....         ....+. ...+++   .++....+|.+.++|..+++.+.
T Consensus       282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~  347 (596)
T d1w6sa_         282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (596)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceee
Confidence            789999998775543211         111111 223443   56778889999999999988664

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.07  E-value=1.3  Score=33.32  Aligned_cols=54  Identities=9%  Similarity=0.148  Sum_probs=39.0

Q ss_pred             CcceEEEEECCCCCEEEEeecCCcEEEEECCCCceee--ec------cCCCCCeEEEEEcCC
Q psy4391         111 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLK--TL------PAHSDPVSAVHFNRD  164 (231)
Q Consensus       111 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~------~~~~~~v~~~~~~~~  164 (231)
                      -...++++|.|+++++++--..|.|++++..+++...  .+      ....+....++++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3557799999999998877667999999887765322  11      122356788999985

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=2.1  Score=29.26  Aligned_cols=104  Identities=16%  Similarity=0.199  Sum_probs=48.7

Q ss_pred             CCEEEEecCC-----CcEEEEeCCCceeeeeecCCCc-ceEEEEECCCCCEEEEeecCC-----cEEEEECCCCceeeec
Q psy4391          81 SRLLVSGSDD-----KTLKIWELSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDE-----SVRIWDVRTGKCLKTL  149 (231)
Q Consensus        81 ~~~l~~~~~~-----g~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~  149 (231)
                      +..++.++.+     ..+..||..+.+....-..... ....... ..+.+++.|+.++     ....+|..+.+....-
T Consensus       149 ~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T d1zgka1         149 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  227 (288)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             ecceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeeccc
Confidence            3444555443     3567788776543221110000 0011111 2345666665442     3567777665432221


Q ss_pred             cCCCCCe-EEEEEcCCCCeEEEEecCC-----eEEEEeCCCCc
Q psy4391         150 PAHSDPV-SAVHFNRDGSLIVSSSYDG-----LCRIWDTASGQ  186 (231)
Q Consensus       150 ~~~~~~v-~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~  186 (231)
                      ....... .+++. .++++++.|+.++     .+.+||+.+++
T Consensus       228 ~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         228 PMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            1111111 12222 2577777776554     47788988765