Diaphorina citri psyllid: psy4398


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300------
MVREGTRLLLVKIFYVLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSKF
ccccccEEEHHHHHHHHccccccccccEEcccEEEECccccccHHHHHHHHHccccEEEcHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEcccccccHHccccccccccccHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHccccEEEEcccccccccccccccHHHHHHHHHccccEEEccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHccccccEEEcccc
*****TRLLLVKIFYVLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTS**
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MVREGTRLLLVKIFYVLDMANANQANINYSNKIILAPMVRMNTLPFRLLALDYGADLVYSEELVDHKLVKTERKVNDLLNTIDFVDPLDGSVVFRTCPREKNKIILQIGTADPERALEAAKKVEHDVAAIDINMGCPKQFSLTGGMGAALLSTPDIACNILTTLISNLSIPVSCKIRVFHNEADTIALCKRLEACGIIAIGVHGRTKAERPRHRNRIEMIRTLTQHLKIPVIANGGSKEIVDYGGVFSLNCAFLRNHYPVEKLPKTILYAHCKYKRFEVPKYETVQYEKLFRSLVTVNGKQYTSKF

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
tRNA-dihydrouridine synthase B Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.confidentQ9HUW1
tRNA-dihydrouridine synthase B Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.confidentQ7VNP2
tRNA-dihydrouridine synthase B Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.confidentQ8ZAX7

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005739 [CC]mitochondrionprobableGO:0005737, GO:0043231, GO:0044464, GO:0043229, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424, GO:0043227, GO:0043226
GO:0017150 [MF]tRNA dihydrouridine synthase activityprobableGO:0003824, GO:0016627, GO:0003674, GO:0016491
GO:0050660 [MF]flavin adenine dinucleotide bindingprobableGO:0043168, GO:0050662, GO:0097159, GO:0043167, GO:0036094, GO:0048037, GO:0005488, GO:0003674, GO:0000166, GO:1901363, GO:1901265

Prediction of Enzyme Commission Number ?

No confident prediction of EC number!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1VHN, chain A
Confidence level:very confident
Coverage over the Query: 31-75,90-266
View the alignment between query and template
View the model in PyMOL
Template: 1EP3, chain A
Confidence level:very confident
Coverage over the Query: 20-277
View the alignment between query and template
View the model in PyMOL
Template: 2UV8, chain G
Confidence level:probable
Coverage over the Query: 22-78,97-138,154-298
View the alignment between query and template
View the model in PyMOL